Articles | Volume 20, issue 9
https://doi.org/10.5194/acp-20-5609-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/acp-20-5609-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
13 May 2020
Research article |
| 13 May 2020
| 13 May 2020
High levels of primary biogenic organic aerosols are driven by only a few plant-associated microbial taxa
Abdoulaye Samaké
CORRESPONDING AUTHOR
Université Grenoble Alpes, CNRS, IRD, INP-G, IGE (UMR 5001),
Grenoble, 38000, France
Aurélie Bonin
Université Grenoble Alpes, CNRS, LECA (UMR 5553), BP 53,
Grenoble, 38041, France
Jean-Luc Jaffrezo
Université Grenoble Alpes, CNRS, IRD, INP-G, IGE (UMR 5001),
Grenoble, 38000, France
Pierre Taberlet
Université Grenoble Alpes, CNRS, LECA (UMR 5553), BP 53,
Grenoble, 38041, France
Samuël Weber
Université Grenoble Alpes, CNRS, IRD, INP-G, IGE (UMR 5001),
Grenoble, 38000, France
Gaëlle Uzu
Université Grenoble Alpes, CNRS, IRD, INP-G, IGE (UMR 5001),
Grenoble, 38000, France
Véronique Jacob
Université Grenoble Alpes, CNRS, IRD, INP-G, IGE (UMR 5001),
Grenoble, 38000, France
Sébastien Conil
ANDRA DRD/OPE Observatoire Pérenne de l'Environnement, 55290 Bure,
France
Jean M. F. Martins
Université Grenoble Alpes, CNRS, IRD, INP-G, IGE (UMR 5001),
Grenoble, 38000, France
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- Long-Term Studies of Biological Components of Atmospheric Aerosol: Trends and Variability A. Safatov et al. https://doi.org/10.3390/atmos13050651
- Sugars in clouds: Measurements and modelling investigation of their aqueous photodegradation A. Bianco et al. https://doi.org/10.1016/j.atmosenv.2025.121167
- Composition and sources of carbonaceous aerosol in the European Arctic at Zeppelin Observatory, Svalbard (2017 to 2020) K. Yttri et al. https://doi.org/10.5194/acp-24-2731-2024
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- Interplay between oxidative potential and health risk of PM2.5-bound metals at a site of the Indo-Gangetic Plain—exploring the influence of biomass burning M. Agarwal et al. https://doi.org/10.1039/D5EM00340G
- Diversity of Microbial Communities, PAHs, and Metals in Road and Leaf Dust of Functional Zones of Moscow and Murmansk A. Vetrova et al. https://doi.org/10.3390/microorganisms11020526
- Variability of the Atmospheric PM10 Microbiome in Three Climatic Regions of France A. Samaké et al. https://doi.org/10.3389/fmicb.2020.576750
- Phylloplane Biodiversity and Activity in the City at Different Distances from the Traffic Pollution Source K. Ivashchenko et al. https://doi.org/10.3390/plants11030402
- Unmanaged grasslands are a reservoir of Alternaria and other important fungal species with differing emission patterns G. Apangu et al. https://doi.org/10.1016/j.jenvman.2024.122416
- Measurement report: Spatial variability of VOCs, ozone, and carbonaceous aerosols during the 2022 European summer heatwave W. Aas et al. https://doi.org/10.5194/acp-26-8717-2026
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- Aerosol source apportionment modelling using a coupled regional–urban scale system W. van Caspel et al. https://doi.org/10.5194/acp-26-8575-2026
- A worldwide aerosol phenomenology: Elemental and organic carbon in PM2.5 and PM10 J. Putaud et al. https://doi.org/10.1016/j.atmosenv.2025.121338
- Bioaerosol nexus of air quality, climate system and human health F. Shen & M. Yao https://doi.org/10.1360/nso/20220050
- Measurement report: Saccharide composition in atmospheric fine particulate matter during spring at the remote sites of southwest China and estimates of source contributions Z. Wang et al. https://doi.org/10.5194/acp-21-12227-2021
- Diversity and Source of Airborne Microbial Communities at Differential Polluted Sites of Rome P. Pollegioni et al. https://doi.org/10.3390/atmos13020224
- Overview of the French Operational Network for In Situ Observation of PM Chemical Composition and Sources in Urban Environments (CARA Program) O. Favez et al. https://doi.org/10.3390/atmos12020207
- Modelling of atmospheric concentrations of fungal spores: a 2-year simulation over France using CHIMERE M. Vida et al. https://doi.org/10.5194/acp-24-10601-2024
- Characterization of Coarse Organic Particulate Matter in Urban and Rural Switzerland Using Advanced Offline Mass Spectrometry K. Schneider-Beltran et al. https://doi.org/10.3390/atmos17020199
- Annual variation of source contributions to PM10 and oxidative potential in a mountainous area with traffic, biomass burning, cement-plant and biogenic influences K. Glojek et al. https://doi.org/10.1016/j.envint.2024.108787
- Characterization of urban aerosol pollution before and during the COVID-19 crisis in a central-eastern European urban environment Z. Kertész et al. https://doi.org/10.1016/j.atmosenv.2023.120267
- High levels of primary biogenic organic aerosols are driven by only a few plant-associated microbial taxa A. Samaké et al. https://doi.org/10.5194/acp-20-5609-2020
- Quantification of 21 sugars in tropospheric particulate matter by ultra-high-performance liquid chromatography tandem mass spectrometry P. Bros et al. https://doi.org/10.5194/amt-18-6315-2025
- Linking Switzerland's PM10 and PM2.5 oxidative potential (OP) with emission sources S. Grange et al. https://doi.org/10.5194/acp-22-7029-2022
- Compositional Data Analysis of 16S rRNA Gene Sequencing Results from Hospital Airborne Microbiome Samples M. Perrone et al. https://doi.org/10.3390/ijerph191610107
- Organic tracers in fine and coarse aerosols at an urban Mediterranean site: contribution of biomass burning and biogenic emissions Á. Clemente et al. https://doi.org/10.1007/s11356-024-32789-x
28 citations as recorded by crossref.
- Characteristics of bacterial and fungal communities and their associations with sugar compounds in atmospheric aerosols at a rural site in northern China M. Niu et al. https://doi.org/10.5194/bg-20-4915-2023
- Cellulose in atmospheric particulate matter at rural and urban sites across France and Switzerland A. Brighty et al. https://doi.org/10.5194/acp-22-6021-2022
- Long-Term Studies of Biological Components of Atmospheric Aerosol: Trends and Variability A. Safatov et al. https://doi.org/10.3390/atmos13050651
- Sugars in clouds: Measurements and modelling investigation of their aqueous photodegradation A. Bianco et al. https://doi.org/10.1016/j.atmosenv.2025.121167
- Composition and sources of carbonaceous aerosol in the European Arctic at Zeppelin Observatory, Svalbard (2017 to 2020) K. Yttri et al. https://doi.org/10.5194/acp-24-2731-2024
- Urban air quality affects the apple microbiome assembly M. Schweitzer et al. https://doi.org/10.1016/j.envres.2024.119858
- Interplay between oxidative potential and health risk of PM2.5-bound metals at a site of the Indo-Gangetic Plain—exploring the influence of biomass burning M. Agarwal et al. https://doi.org/10.1039/D5EM00340G
- Diversity of Microbial Communities, PAHs, and Metals in Road and Leaf Dust of Functional Zones of Moscow and Murmansk A. Vetrova et al. https://doi.org/10.3390/microorganisms11020526
- Variability of the Atmospheric PM10 Microbiome in Three Climatic Regions of France A. Samaké et al. https://doi.org/10.3389/fmicb.2020.576750
- Phylloplane Biodiversity and Activity in the City at Different Distances from the Traffic Pollution Source K. Ivashchenko et al. https://doi.org/10.3390/plants11030402
- Unmanaged grasslands are a reservoir of Alternaria and other important fungal species with differing emission patterns G. Apangu et al. https://doi.org/10.1016/j.jenvman.2024.122416
- Measurement report: Spatial variability of VOCs, ozone, and carbonaceous aerosols during the 2022 European summer heatwave W. Aas et al. https://doi.org/10.5194/acp-26-8717-2026
- Source, Monitoring Techniques and Prospects of Bioaerosols: A Review J. Wu et al. https://doi.org/10.3390/toxics14050404
- Aerosol source apportionment modelling using a coupled regional–urban scale system W. van Caspel et al. https://doi.org/10.5194/acp-26-8575-2026
- A worldwide aerosol phenomenology: Elemental and organic carbon in PM2.5 and PM10 J. Putaud et al. https://doi.org/10.1016/j.atmosenv.2025.121338
- Bioaerosol nexus of air quality, climate system and human health F. Shen & M. Yao https://doi.org/10.1360/nso/20220050
- Measurement report: Saccharide composition in atmospheric fine particulate matter during spring at the remote sites of southwest China and estimates of source contributions Z. Wang et al. https://doi.org/10.5194/acp-21-12227-2021
- Diversity and Source of Airborne Microbial Communities at Differential Polluted Sites of Rome P. Pollegioni et al. https://doi.org/10.3390/atmos13020224
- Overview of the French Operational Network for In Situ Observation of PM Chemical Composition and Sources in Urban Environments (CARA Program) O. Favez et al. https://doi.org/10.3390/atmos12020207
- Modelling of atmospheric concentrations of fungal spores: a 2-year simulation over France using CHIMERE M. Vida et al. https://doi.org/10.5194/acp-24-10601-2024
- Characterization of Coarse Organic Particulate Matter in Urban and Rural Switzerland Using Advanced Offline Mass Spectrometry K. Schneider-Beltran et al. https://doi.org/10.3390/atmos17020199
- Annual variation of source contributions to PM10 and oxidative potential in a mountainous area with traffic, biomass burning, cement-plant and biogenic influences K. Glojek et al. https://doi.org/10.1016/j.envint.2024.108787
- Characterization of urban aerosol pollution before and during the COVID-19 crisis in a central-eastern European urban environment Z. Kertész et al. https://doi.org/10.1016/j.atmosenv.2023.120267
- High levels of primary biogenic organic aerosols are driven by only a few plant-associated microbial taxa A. Samaké et al. https://doi.org/10.5194/acp-20-5609-2020
- Quantification of 21 sugars in tropospheric particulate matter by ultra-high-performance liquid chromatography tandem mass spectrometry P. Bros et al. https://doi.org/10.5194/amt-18-6315-2025
- Linking Switzerland's PM10 and PM2.5 oxidative potential (OP) with emission sources S. Grange et al. https://doi.org/10.5194/acp-22-7029-2022
- Compositional Data Analysis of 16S rRNA Gene Sequencing Results from Hospital Airborne Microbiome Samples M. Perrone et al. https://doi.org/10.3390/ijerph191610107
- Organic tracers in fine and coarse aerosols at an urban Mediterranean site: contribution of biomass burning and biogenic emissions Á. Clemente et al. https://doi.org/10.1007/s11356-024-32789-x
Saved (final revised paper)
Latest update: 21 Jul 2026
Short summary
Despite being a major source of coarse organic matter, primary biogenic organic aerosols (PBOAs) remain poorly implemented in source-resolved chemical transport models. This study, based on an intensive field sampling of aerosols, combined physicochemical characterizations of PM10 with DNA high-throughput sequencing to provide a comprehensive understanding of the microbial fingerprints associated with primary sugar compounds (tracers of PBOAs) and their main surrounding environmental sources.
Despite being a major source of coarse organic matter, primary biogenic organic aerosols (PBOAs)...
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