Supplemental Material for:
 Investigating the Links Between Ozone and Organic Aerosol 
 Chemistry in a Biomass Burning Plume from a Prescribed Fire 
 in California Chaparral, ACP 2014
 
 Correspondence to: M. J. Alvarado (malvarad@aer.com)
 
The following is a list of current Inorganic Input Decks
for the Aerosol Simulation Program v2.1.  
Refer to each file for additional detail.
 
 
AerosolThermoKusikMeissner.in
	This Input Deck Details the thermodynamic Kusik-Meissner data for
	the available electrolytes.	The input file has three columns, separated 
	by semi-colons :
		1). The Equiliribum Reaction (put Electrolyte on Left Hand Side)
		2). q_r (for Kusik and Meissner calculation)
		3). q_T (             "  "                 )

	
AqEquilibriumReactions.in
	This Input Deck Details the Aqueous Phase Electrolytic Equilibria.
	Flag is 0 if LHS electrolyte is liquid, 1 if it is solid 

	The input file has three columns, separated by semi-colons :
		1). The Equiliribum Reaction (put Electrolyte on Left Hand Side)
		2). Keq(298K)  (The equilibrium coefficient at the reference temperature)  -- in mol/kg (for aq) units)
                  (if this is "Infinite", then the model condenses directly into ions, no aqueous phase)
                  (think: sulfuric acid.)
		3). - DeltaH0 / R T0  (One coefficient of temperature dependence for Keq)
		4). - DeltaCp0 / R    (The other coefficient of temperature dependence for Keq)
		5). First Density Parameter (linear term) for the dissociated form of the electrolyte (if electrolytic, 
		        otherwise 0).
		6). Second Density Parameter (exponential term) (again, zero if non electrolytic)
		7). Surface Tension saturation surface excess (mol / m2) 
		8). Surface Tension equilibrium adsorption coefficient (K, dimensionless)
		9). Deliquesence Relative Humidity @ 298 K
		10). Temperature dependence of DRH (-18*m_si*L_si/1000/R)


AqPhaseChems.in
	This is the AQUEOUS PHASE INORGANIC CHEMICALS INPUT DECK for ASP   
	Water is hard coded in and should not be included here.
	Only the undissociated form of electrolytes should be included.
	Dissociation is specified in AqEquilibirumReactions.in

	Specify the following variables, separating each by a semi-colon and 
	including each on a single line for each gas:
	NAME (no more than 15 characters): Make sure this is the same
		as that used in the other chemical input decks
	CONSTANT?: Some chemicals will be held fixed, and others allowed
		to evolve with time.  Put a "1" if evolving, "0" if not
	MOLECULAR MASS (g / mole)
		SOLID SALT DENSITY (g/cm3): Used to calculate the particle density when solid
		species are present (from Perry's Handbook, 7th ed., where present, assumed 1.5
		 otherwise)
		REFRACTIVE INDEX FLAG: 0 if the H2O refractive index is used
	                           1 if the sulfate droplet refractive index is used
	                           2 if the sea salt refractive index is used
	                           3 if the mineral dust refractive index is used


AqPhaseIons.in
	This Input Deck Details the Aqueous Phase Ions.
	The input file has three columns, separated by semi-colons :
	ION NAME
	CHARGE (Z units: ...-1,1,2,...)
	MASS (g/mole)
	IONIC REFRACTION
	(From Tang et. al., JGR V.102, D19, pp. 23269-23275, 1997. or
	Tang, JGR V.102, D2, pp. 1883-1893, 1997.)
	
	
GasChemicalMechanism.in
	This is a gas phase mechanism input deck for ASP.
	See file for detailed mechanism description
	
	
GasPhaseChems.in
	This is the GAS PHASE CHEMISTRY INPUT DECK for ASP that gives
	the full list of gases tracked in the gas phase 
	(water vapor is hard coded in and should not be included here)

	Specify the following variables; separating each by a semi-colon and 
	including each on a single line for each gas:
	NAME (no more than 15 characters): Make sure this is the same
	     as that used in the other chemical input decks
	CONSTANT?: Some chemicals will be held fixed; and others allowed
	  to evolve with time.  Put a 1 if evolving; 0 if not
	MOLECULAR MASS (g / mole)
	INITIAL CONCENTRATION (ppbv): If this is
 	  a string; the program will look for an input deck of that name
	  in the main directory that contains point-by-point data.  Otherwise 
	  it is homogeneously set to this value.
	BACKGROUND CONCENTRATION (ppbv)
	DEPOSITION VELOCITY (cm/s)
	CONCENTRATION INPUT TYPE FLAG:
	(0 if input concentrations are ppbv; 1 if they are mg / m3)


HydrophilicOrgChems.in
	This is the HYDROPHILIC ORGANIC CHEMICALS INPUT DECK for ASP

	Specify the following variables, separating each by a semi-colon and 
	including each on a single line for each gas:
		1. NAME (no more than 15 characters): Make sure this is the same
	     as that used in the other chemical input decks
		2. CONSTANT?: Some chemicals will be held fixed, and others allowed
		  to evolve with time.  Put a "1" if evolving, "0" if not
		3. MOLECULAR MASS (g / mole)
		4. DENSITY (g/cm3)
		5. NUMBER of CARBONS per molecule
		6. Kappa (see Petters and Kreidenweis, ACP, 7, 1961, 2007.)
		7. Raoult's Law Activity Coefficient at Infinite Dilution
		8. ACTIVITY COEFFICIENT FLAG
			if 0. - number than follows is the index (starting at 1) 
                 of the compound in unifacparams.h and the 
                 subroutine UNIDRIV
			if 1. - number that follows is a constant 
                 organic activity HENRY'S LAW coefficient (usually 1.0)
			NOTE: It is safest to set these flags the same for all compounds
			considered. Otherwise the UNIFAC compunds are treated as their 
			own solution that doesn't inteact with the constant compounds.


HydrophilicOrganicDissolution.in
	This is the HYDROPHILIC ORGANIC DISSOLUTION INPUT DECK for ASP
	Only direct dissolution without reaction is allowed here. Effective Henry's Law
	Constants are calculated which include the effect of acid dissociation, if present.

	Specify the following variables, separating each by a semi-colon and 
	including each on a single line for each gas:
	REACTION (each no more than 15 characters): Make sure this is the same
	          as that used in the other chemical input decks
	MASS ACCOMMODATION COEFFICIENT: A positive value
	HENRY's LAW CONSTANT (H): (ug i/ug H2O)/(ug i/m3 air)
	Temp Dependence for Henry's Law: kcal/mol
	First Acid Dissociaditon Constant (K1) : mol i/kg H2O
	Temp dependence of K1 : kcal/mol
	Second Acid Dissociation constant (K2) : mol i/kg H2O
	Temp dependence of K2 : kcal/mol    
	
	
OrgPhaseChems.in
	This is the HYDROPHOBIC PHASE CHEMICALS INPUT DECK for MELAM
	that is read in by SetOrgPhaseChemistry() in OrgPhaseChemInits.h 

	Black Carbon (BC) is hard coded to be the first compound and should not
	be included here.

	Specify the following variables, separating each by a semi-colon and 
	including each on a single line for each gas:
		1. NAME (no more than 15 characters): Make sure this is the same
		     as that used in the other chemical input decks
		2. CONSTANT?: Some chemicals will be held fixed, and others allowed
			to evolve with time.  Put a "1" if evolving, "0" if not
		3. MOLECULAR MASS (g / mole)
		4. DENSITY (g/cm3)
		5. ACTIVITY COEFFICIENT FLAG
         if 0. - number than follows is the index (starting at 1) 
                 of the compound in unifacparams.h and the 
                 subroutine UNIDRIV
         if 1. - number that follows is a constant 
                 organic activity coefficient (usually 1.0)
         NOTE: It is safest to set these flags the same for all compounds
         considered. Otherwise the UNIFAC compunds are treated as their 
         own solution that doesn't inteact with the constant compounds.

OrganicDissolution.in
	This is the HYDROPHOBIC (organic) PHASE DISSOLUTION INPUT DECK for ASP
		
	Only direct dissolution without reaction is allowed here.
	Specify the following variables, separating each by a semi-colon and 
	including each on a single line for each gas:
	REACTION (each no more than 15 characters): Make sure this is the same
			as that used in the other chemical input decks
	MASS ACCOMMODATION COEFFICIENT: A positive value
	
	The next four parameters are needed to calculate vapor pressure
		following Myrdal and Yalkowski (1997) (Flag = 0):
	BOILING POINT (K)(From ACD/Boiling Point Software)
	TORSIONAL BOND NUMBER (From Rob Griffin)
	HYDROGEN BOND NUMBER
	Correction Factor (CF) (divide calculated vapor pressure by this factor - 
		see discussion in Griffin et al 2005, JGR 101, D05304,
		doi:10.1029/2004JD005219)