<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "https://jats.nlm.nih.gov/nlm-dtd/publishing/3.0/journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-26-14749-2026</article-id><title-group><article-title>Molecular representation of benzene and phenol secondary organic aerosols</article-title><alt-title>Molecular representation of benzene and phenol secondary organic aerosols</alt-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Le Bayon</surname><given-names>Aurélien</given-names></name>
          <email>aurelien.le-bayon@enpc.fr</email>
        <ext-link>https://orcid.org/0009-0006-0476-7307</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Ojala</surname><given-names>Aliisa</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff2">
          <name><surname>Iyer</surname><given-names>Siddharth</given-names></name>
          <email>siddharth.iyer@tuni.fi</email>
        <ext-link>https://orcid.org/0000-0001-5989-609X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Wang</surname><given-names>Zhizhao</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2334-6173</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Lannuque</surname><given-names>Victor</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9373-0712</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Couvidat</surname><given-names>Florian</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4485-3489</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Ciuraru</surname><given-names>Raluca</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Sartelet</surname><given-names>Karine</given-names></name>
          <email>karine.sartelet@enpc.fr</email>
        <ext-link>https://orcid.org/0000-0002-8165-2128</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>CEREA, Ecole nationale des ponts et chaussées, EDF R&amp;D, Institut Polytechnique de Paris, IPSL, 77455 Marne-la-vallée, France</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Aerosol Physics Laboratory, Tampere University, 33720 Tampere, Finland</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>College of Engineering Center for Environmental Research and Technology (CE-CERT), University of California, Riverside, CA 92521, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Institut National de l'Environnement Industriel et des Risques, 60550 Verneuil-en-Halatte, France</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>ECOSYS, University Paris-Saclay, INRAE, AgroParisTech, 91120 Palaiseau, France</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Aurélien Le Bayon (aurelien.le-bayon@enpc.fr), Siddharth Iyer (siddharth.iyer@tuni.fi), and Karine Sartelet (karine.sartelet@enpc.fr)</corresp></author-notes><pub-date><day>20</day><month>October</month><year>2026</year></pub-date>
      
      <volume>26</volume>
      <issue>20</issue>
      <fpage>14749</fpage><lpage>14768</lpage>
      <history>
        <date date-type="received"><day>12</day><month>June</month><year>2026</year></date>
           <date date-type="rev-request"><day>2</day><month>July</month><year>2026</year></date>
           <date date-type="rev-recd"><day>22</day><month>September</month><year>2026</year></date>
           <date date-type="accepted"><day>26</day><month>September</month><year>2026</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2026 Aurélien Le Bayon et al.</copyright-statement>
        <copyright-year>2026</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026.html">This article is available from https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d2e180">Recent experimental and theoretical work has highlighted missing pathways in the oxidation of aromatic compounds, with consequences for the formation of highly oxygenated products relevant to secondary organic aerosol (SOA) formation. In this study we develop an updated, quasi-explicit oxidation mechanism for benzene based on Master Chemical Mechanism (MCM) v3.3.1, extended to represent key multi-generation chemistry. Quantum chemical calculations are used to derive the formation and evolution of geminal-diol bicyclic peroxy radicals and to parameterize the subsequent molecular rearrangements. The mechanism further incorporates autoxidation sequences previously developed for peroxy and alkoxy radicals, successive <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> additions and cyclic epoxides formation. This approach enables a more mechanistic description of aromatic oxidation leading to highly oxygenated, low-volatility products. The mechanism is evaluated using box-model simulations against a set of chamber experiments conducted under various conditions. Simulated aerosol concentrations agree well with observations and emphasize the dominant contribution of the newly implemented pathways. The quasi-explicit mechanism is subsequently reduced using the GENerator of reduced Organic Aerosol mechanisms (GENOA), resulting in a semi-explicit mechanism reduced to 1 % of its original number of species while reproducing SOA mass with a mean error of 3.9 % relative to the quasi-explicit scheme. Using the validated reduced mechanism, zero-dimensional simulations under contrasted atmospheric conditions are conducted to estimate the SOA compounds that are formed in the early stages of oxidation and those that dominate the system at later stages.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>Agence Nationale de la Recherche</funding-source>
<award-id>ANR-21-CE01-0019</award-id>
</award-group>
<award-group id="gs2">
<funding-source>Research Council of Finland</funding-source>
<award-id>355966</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d2e200">Volatile organic compounds (VOCs) play an important role in the formation of secondary organic aerosols (SOA). In the atmosphere, these compounds may react with oxidants such as <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, leading to the formation of more functionalized organic species <xref ref-type="bibr" rid="bib1.bibx23 bib1.bibx30" id="paren.1"/>. These newly formed species may have a lower saturation vapor pressure and are more likely to participate to the formation and growth of SOA <xref ref-type="bibr" rid="bib1.bibx45" id="paren.2"/>, which have multiple impacts on health <xref ref-type="bibr" rid="bib1.bibx37 bib1.bibx50" id="paren.3"/> and environment <xref ref-type="bibr" rid="bib1.bibx27" id="paren.4"/>.</p>
      <p id="d2e246">Aromatic compounds account for a significant proportion of anthropogenic VOCs <xref ref-type="bibr" rid="bib1.bibx53" id="paren.5"/>. Benzene, the simplest aromatic compound, is considered a carcinogen and endocrine disruptor <xref ref-type="bibr" rid="bib1.bibx3" id="paren.6"/>, and it can affect the circulatory system or lead to the development of chronic diseases <xref ref-type="bibr" rid="bib1.bibx31 bib1.bibx4" id="paren.7"/>. This compound is emitted by many sources: traffic, cigarette smoke, and industrial solvent use, particularly in sectors such as textiles, pesticides and pharmaceuticals <xref ref-type="bibr" rid="bib1.bibx66" id="paren.8"/>. Phenol is the main product of benzene oxidation by the hydroxyl radical. It may also be primarily emitted by numerous primary sources in the atmosphere, such as biomass burning, traffic exhaust and manure spreading in agriculture <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx59" id="paren.9"/>. Oxidation of benzene and phenol leads to the formation of functionalised products that may form SOA, including glyoxal and methylglyoxal <xref ref-type="bibr" rid="bib1.bibx24" id="paren.10"/>.</p>
      <p id="d2e268">In three-dimensional (3D) simulation models, the formation of SOA from a VOC precursor is usually parameterized based on yields derived from atmospheric simulation chamber experiments. Typical approaches include the two-compound Odum approach <xref ref-type="bibr" rid="bib1.bibx42" id="paren.11"/>, the surrogate approach <xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx13" id="paren.12"/>, or the volatility basis set <xref ref-type="bibr" rid="bib1.bibx15" id="paren.13"/>. While computationally efficient, these parameterizations do not explicitly resolve the molecular composition of the particle phase, or do so only for a limited number of representative compounds in the case of the surrogate approach <xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx36" id="paren.14"/>. To improve the representation of aerosol chemical composition and reduce reliance on empirical fitting, semi-explicit approaches are emerging <xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx35 bib1.bibx67" id="paren.15"/>. These approaches selectively retain the main products and reaction pathways from explicit oxidation mechanisms, along with their subsequent degradation products.</p>
      <p id="d2e286">Quasi-explicit oxidation schemes provide a comprehensive representation of atmospheric photooxidation products and reactions <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx2" id="paren.16"/>, but their complexity limits their use in 3D air-quality models. Hence <xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx64" id="text.17"/> developed an algorithm to reduce quasi-explicit chemical mechanisms to sizes suitable for 3D atmospheric simulations, while conserving the predominant pathways and characteristics of SOA compounds. In this algorithm, called GENerator of reduced Organic Aerosol mechanism (GENOA), the main oxidation pathways are identified, accounting for radical chemistry, which has been shown to be crucial for monoterpenes <xref ref-type="bibr" rid="bib1.bibx65" id="paren.18"/>. The SOA chemical composition is accurately represented in terms of functional groups <xref ref-type="bibr" rid="bib1.bibx63" id="paren.19"/>, making it possible to capture interactions between compounds through non-ideality and partitioning into both organic and aqueous phases <xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx28" id="paren.20"/>. Coupled to 3D air-quality models, the reduced mechanisms enable mapping of the molecular composition of SOA on multiple spatial scales, as demonstrated for terpenes at the European scale <xref ref-type="bibr" rid="bib1.bibx65" id="paren.21"/> and for toluene from regional to street-scale applications <xref ref-type="bibr" rid="bib1.bibx55" id="paren.22"/>.</p>
      <p id="d2e312">The Master Chemical Mechanism (MCM) <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx7" id="paren.23"/> is a quasi-explicit mechanism that accurately represents precursor degradation and formation of first-generation oxidation products <xref ref-type="bibr" rid="bib1.bibx9" id="paren.24"/>. However, based on the results of experimental studies on benzene oxidation <xref ref-type="bibr" rid="bib1.bibx41 bib1.bibx8 bib1.bibx51 bib1.bibx10 bib1.bibx11" id="paren.25"/>, several compounds and oxidation pathways are not included in this scheme which especially underrepresents the formation of highly oxidized compounds and organonitrates, thus strongly impacting SOA formation. In recent years, experimental data analysis led to the identification of new oxidation pathways with adjustment of previously existing ones, to better represent the formation of specific compounds, such as nitrocatechol <xref ref-type="bibr" rid="bib1.bibx20" id="paren.26"/> and the formation of observed fragmentation products, such as glyoxal and muconaldehyde <xref ref-type="bibr" rid="bib1.bibx60" id="paren.27"/> or ketene-enols and small carboxylic acids <xref ref-type="bibr" rid="bib1.bibx68 bib1.bibx61" id="paren.28"/>. An autoxidation mechanism was also developed for benzene, allowing for a better representation of several classes of compounds, such as peroxides and organonitrates <xref ref-type="bibr" rid="bib1.bibx48" id="paren.29"/>. Pathways related to the rearrangement of bicyclic peroxy radicals (BPR) are still missing, especially for geminal diol derived BPRs formed from the oxidation of phenol and catechol.</p>
      <p id="d2e337">This work aims to construct a semi-explicit scheme for benzene oxidation that integrates the main SOA formation pathways relevant under atmospheric conditions. First, a quasi-explicit oxidation scheme is developed, incorporating recent advances in the understanding of benzene oxidation. This mechanism, based on the Master Chemical Mechanism and enriched by the state-of-the-art known oxidation routes, is presented in Sect. <xref ref-type="sec" rid="Ch1.S2"/>.  Quantum chemical calculations are then used to investigate the role of BPR rearrangements, which may be particularly relevant for geminal diols formed during the oxidation of phenol and catechol. Pathways related to BPR rearrangement are determined in Sect. <xref ref-type="sec" rid="Ch1.S3"/>. Comparison with experimental data is used to validate the quasi-explicit scheme in Sect. <xref ref-type="sec" rid="Ch1.S4"/>. The quasi-explicit scheme is reduced using GENOA for 3D atmospheric air-quality modeling by training over Europe in Sect. <xref ref-type="sec" rid="Ch1.S5"/>. The relative influence of the different pathways for benzene and phenol SOA formation under atmospheric conditions is studied in Sect. <xref ref-type="sec" rid="Ch1.S6"/>.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Benzene and phenol oxidation mechanism</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>The MCM near-explicit baseline</title>
      <p id="d2e365">The quasi-explicit benzene oxidation mechanism developed in this work is based on the MCM v3.3.1 <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx7" id="paren.30"/> to which several oxidation pathways are added. The MCM scheme integrates 135 species and 334 reactions, initiated by the benzene oxidation by the hydroxyl radical. Three distinct compounds result from this first step, phenol from hydroxyl radical addition on the aromatic cycle, a BPR from the addition of <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> and two <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and a dicarbonyl epoxide through <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition followed by ring opening.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Successive <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition pathway</title>
      <p id="d2e426">In addition to the <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-abstraction from the hydroxyl group, <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> can react with phenols via addition to the aromatic ring. In the benzene MCM scheme, two successive <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> additions are represented, leading to the formation of two phenolic compounds, phenol and catechol (dihydroxybenzene). Owing to the electrophilic nature of the hydroxyl group, the kinetics of <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition become increasingly important as the number of <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>-substituted carbons on the aromatic ring increases <xref ref-type="bibr" rid="bib1.bibx1" id="paren.31"/>. Following the work of <xref ref-type="bibr" rid="bib1.bibx58" id="text.32"/> on toluene oxidation, further <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition is considered in the quasi-explicit scheme, leading to the formation of new phenolic compounds, tri, tetra and pentahydroxybenzene. These compounds further react in the atmosphere and lead to the formation of BPRs through OH addition and <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition, alkyl peroxides through <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M18" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reactions and quinones formation through bicylic alkoxy radical degradation. The branching ratios used in the multi-hydroxylation pathway could be assumed to be the same as their methylated equivalent presented in <xref ref-type="bibr" rid="bib1.bibx58" id="text.33"/> for cresol, i.e., 7 % for H-abstraction and 93 % for addition. However, recent studies indicate a higher branching ratio for abstraction in the reaction of catechol with <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>, <xref ref-type="bibr" rid="bib1.bibx16" id="text.34"/> proposes an abstraction branching ratio of 30 % with an addition rate of 70 %. The kinetic constants are extracted from the MCM when available or calculated using the Structure-Activity Relationship (SAR) method implemented in the generator of explicit mechanisms GECKO-A (Generator for Explicit Chemistry and Kinetics in the Atmosphere) <xref ref-type="bibr" rid="bib1.bibx26" id="paren.35"/>. For aromatic compounds, the kinetic constant is calculated based on the number of substituted carbons and the nature and position of the substituents on the aromatic ring (see example in Supplement S1). The reactions and compounds resulting from the successive hydroxylation of benzene are integrated into the quasi-explicit mechanism (see Supplement S2).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Peroxy and alkoxy radicals autoxidation pathway</title>
      <p id="d2e550">Autoxidation, defined as successive intramolecular reactions followed at each step by <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition reactions, results in the formation of peroxy radicals (<inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) with high oxygenated content. Bimolecular reactions involving peroxy radicals may also lead to the formation of alkoxy radicals. Radical termination in the autoxidation cycle leads to the formation of organonitrates (reaction with <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula>), hydroperoxides (reaction with <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), carbonyl compounds and dialkyl peroxide dimers (<inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">ROOR</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>). These dimers are compounds of extremely low volatility and result from the accretion reactions between peroxy radicals <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="normal">R</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx5" id="paren.36"/>.</p>
      <p id="d2e632">The autoAPRAM framework developed by <xref ref-type="bibr" rid="bib1.bibx48" id="text.37"/> allows to generate complete autoxidation mechanisms using specified alkoxy and peroxy radicals as input. Two sets of standard reaction types are implemented in the framework: the first set comprises twelve types of reactions specific to peroxy radicals, taking into account reactions with radicals (<inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), possible autoxidation reactions (<inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-shift and <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition), accretion reactions, alkoxy radical formation from bimolecular reactions and peroxy radical termination <xref ref-type="bibr" rid="bib1.bibx14 bib1.bibx6 bib1.bibx44" id="paren.38"/>. The second set defines alkoxy radicals chemistry through three reactions and includes fragmentation, autoxidation and reactions forming closed shell products (see Supplement S9). These reaction sets are applied to each alkoxy and peroxy radical from the input scheme and each newly formed radical, generating the complete autoxidation mechanism.</p>
      <p id="d2e691">Using the autoAPRAM framework with the peroxy and alkoxy radicals from the benzene MCM mechanism as input, the autoxidation mechanism generated in <xref ref-type="bibr" rid="bib1.bibx48" id="text.39"/> comprises 869 species and 934 reactions. Over 85 % of these reactions stem from the accretion processes, as each peroxy radicals combination must be considered as a reaction. This mechanism is integrated in the quasi-explicit scheme to take into account the autoxidation processes initiated by the benzene MCM scheme.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Cyclic epoxide formation pathway</title>
      <p id="d2e705">Epoxide compounds exhibit significant uptake in the particle phase, thus playing an important role in aerosol formation and growth <xref ref-type="bibr" rid="bib1.bibx49" id="paren.40"/>. For isoprene chemistry, epoxide formation is explained as the <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>-oxidation of a carbon double bond neighboring a hydroperoxide group <xref ref-type="bibr" rid="bib1.bibx46 bib1.bibx34" id="paren.41"/>. In a similar fashion, <xref ref-type="bibr" rid="bib1.bibx19" id="text.42"/> identified the oxidation pathways leading to the formation of cyclic epoxides from toluene. From electronic structure and kinetic calculations, <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> oxidation of toluene-derived bicyclic peroxides (T-ROOH) and nitrates (T-RONO2) can lead to the formation of the cyclic epoxide, with a 56.1 % and 22.4 % yield respectively. Other competitive reaction pathways are discussed in <xref ref-type="bibr" rid="bib1.bibx19" id="text.43"/>, leading to the formation of a ring-open epoxide with a 1.44 % yield as well as highly volatile C2-C4 dicarbonyls with a 42.4 % yield for T-ROOH. The oxidation of T-RONO2 essentially leads to the formation of light dicarbonyls (56.0 %), dicarbonyl retaining the O-O bridge (21.4 %) and the nitrated equivalent of the epoxide formed by T-ROOH (0.2 %).  In the absence of further information for benzene, the branching ratios presented in <xref ref-type="bibr" rid="bib1.bibx19" id="text.44"/> are used for the <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> oxidation of benzene-derived bicyclic peroxide and nitrate. Following the nomenclature of <xref ref-type="bibr" rid="bib1.bibx19" id="text.45"/>,  species introduced in the benzene oxidation scheme are named BEPOX, B-ROOH, and B-RONO2. Minor oxidation pathways (<inline-formula><mml:math id="M35" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 2 % yield) are not considered in the implemented mechanism. The compounds and adapted branching ratios involved in the formation of BEPOX are described in Fig. <xref ref-type="fig" rid="F1"/>.</p>

      <fig id="F1" specific-use="star"><label>Figure 1</label><caption><p id="d2e762">Formation of the cyclic epoxide BEPOX from B-ROOH and B-RONO2 oxidation and competing reaction pathways following the pathways suggested by <xref ref-type="bibr" rid="bib1.bibx19" id="text.46"/> for toluene.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f01.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Adaptation of existing pathways</title>
      <p id="d2e783">The oxidation pathways proposed by MCM v3.3.1 for benzene have been updated based on recent experimental results and theoretical calculations. In MCM v3.3.1, the oxidation reaction of benzene by <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> leads to the formation of phenol (53 %), of benzene-BPR (35.2 %) and of an open-chain epoxide (11.8 %). Experimentally, the epoxide is observed with a very low yield <xref ref-type="bibr" rid="bib1.bibx69 bib1.bibx68" id="paren.47"/> and epoxide compounds are rather formed from BPR pathways, as discussed in Sect. <xref ref-type="sec" rid="Ch1.S2.SS4"/>. First generation epoxide formation is therefore removed from the quasi-explicit scheme and the branching ratio leading to the BPR formation is updated to 47 % <xref ref-type="bibr" rid="bib1.bibx68" id="paren.48"/>.</p>
      <p id="d2e802">In the benzene MCM scheme, the bicyclic alkoxy radical formed from benzene BPR is assumed to degrade exclusively via decomposition into glyoxal, butenedial, and furanone. However, a thermokinetic study conducted by <xref ref-type="bibr" rid="bib1.bibx61" id="text.49"/> demonstrated that an alternative <inline-formula><mml:math id="M37" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-shift pathway can compete with decomposition, leading to the formation of a ketene–enol intermediate. This intermediate rapidly oxidizes to formyl ketene, glyoxal, and formic acid. The same study also investigated butenedial oxidation, and identified the 3-carbon aldehyde acrolein as an additional degradation product. To better represent the bicyclic alkoxy radical degradation, oxidation schemes of ketenol (derived from <xref ref-type="bibr" rid="bib1.bibx61" id="text.50"/>) and acrolein (from MCM v3.3.1) are included in the quasi-explicit benzene scheme.</p>
      <p id="d2e819">Due to their high level of functionalization and very low saturation vapor pressures, most end products resulting from the newly implemented pathways partition almost entirely into the particulate phase. For compounds whose volatility is high enough to allow their presence in both gas and particulate phases, loss reactions are implemented to prevent their accumulation. Following the approach used in <xref ref-type="bibr" rid="bib1.bibx32" id="text.51"/>, degradation via photolysis and reactions with <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M39" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M40" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radicals are considered for these compounds without explicitly accounting for their oxidation products and using the SAR method to estimate their kinetic rate constants.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Rearrangement of the bicyclic peroxy radicals</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Benzene BPR</title>
      <p id="d2e868">Bicyclic peroxy radicals are key intermediates in the chemistry of aromatic compounds, formed through <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition on the ring followed by <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-additions. In the MCM scheme, benzene BPR forms a bicyclic alkoxy radical mainly through reaction with <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula>, being able to undergo ring-opening and ultimately forming C2 and C4 compounds, such as glyoxal, butenedial and furanone.</p>
      <p id="d2e898">Non-cyclic compounds may also be formed from spontaneous rearrangement of BPR, as detailed in <xref ref-type="bibr" rid="bib1.bibx22" id="text.52"/> for toluene. This process leads to the breakage of the peroxide bridge along one of the adjacent C-C bonds, linked to the <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> functional group. Following ring-breakage, the ring-opened <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> undergoes two consecutive autoxidation cycles. A 1,6 <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-shift from the -OH substituted carbon first leads to a resonance stabilized alkyl radical, that then rapidly adds <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to form a <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> peroxy radical. This in turn has a 1,6 enolic <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-shift, a reaction reported previously to be exceptionally fast <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx18" id="paren.53"/>, forming a  <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> peroxy radical. Its hydrogenation by reaction with <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> leads to the formation of the main termination product of this cycle, the trihydroperoxide <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">8</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Due to its low saturation vapor pressure, it is mainly found in the particulate phase and further autoxidation reactions are not represented. The autoxidation sequence previously described and represented in Fig. <xref ref-type="fig" rid="F2"/> is implemented in the quasi-explicit oxidation scheme. The kinetic constants for benzene BPR rearrangement and further reactions are based on the thermodynamic calculations presented in <xref ref-type="bibr" rid="bib1.bibx22" id="text.54"/>.</p>

      <fig id="F2" specific-use="star"><label>Figure 2</label><caption><p id="d2e1036">Simplified autoxidation pathway and termination of benzene BPR rearrangement as represented in the quasi-explicit mechanism.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f02.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Geminal diol BPR</title>
      <p id="d2e1053">In commonly used oxidation schemes, hydroxyl radical addition only occurs on non-substituted ring carbons, leading to the formation of vicinal diols. However, <inline-formula><mml:math id="M53" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition can also occur at already substituted carbons. This can lead to geminal diol BPRs that can undergo molecular rearrangement with rate constants that are several orders of magnitude higher compared to non-oxygenated aromatics. <xref ref-type="bibr" rid="bib1.bibx43" id="paren.55"/>. As a result, the oxidation of phenol and catechol via the geminal diol pathway can rapidly yield highly oxygenated organic molecules (HOM), including <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> carboxylic acids and even diacids in the case of catechol. The yields of HOM via this pathway are a function of the initial <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition yield, branching ratio to the formation of BPR intermediates, molecular rearrangement rate coefficient of the BPR and subsequent chemistry following molecular rearrangement. This means that the minor geminal diol BPR pathway can have a disproportionately high contribution to the SOA yield. Reaction rate constants and resulting product structures are determined using quantum chemical calculations, as is now detailed.</p>
<sec id="Ch1.S3.SS2.SSS1">
  <label>3.2.1</label><title>Quantum chemical calculations</title>
      <p id="d2e1093">The rate coefficients are calculated using multi-conformer transition state theory (MC-TST), with the equation:

              <disp-formula id="Ch1.Ex1"><mml:math id="M56" display="block"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mi>T</mml:mi></mml:mrow><mml:mi>h</mml:mi></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mo>∑</mml:mo><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>Q</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mi>e</mml:mi><mml:mfrac><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mi>T</mml:mi></mml:mrow></mml:mfrac></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mo>∑</mml:mo><mml:mi>j</mml:mi></mml:msub><mml:msub><mml:mi>Q</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:msup><mml:mi>e</mml:mi><mml:mfrac><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mi>T</mml:mi></mml:mrow></mml:mfrac></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mi>e</mml:mi><mml:mstyle scriptlevel="+1"><mml:mfrac><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mi>T</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:msup></mml:mrow></mml:math></disp-formula>

            where <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the Boltzmann constant, <inline-formula><mml:math id="M58" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula> is the temperature, <inline-formula><mml:math id="M59" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula> is the Planck constant, <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:msub><mml:mi>Q</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the partition functions and <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the energies. The MC-TST equation includes a Boltzmann weighted contribution of the partition functions of multiple low-lying conformers of the transition state and reactant. The index <inline-formula><mml:math id="M62" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> refers to the transition states and <inline-formula><mml:math id="M63" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> to the reactant, the summations runs over all relevant conformers and the energy differences in the sum refer to the energy difference in relation to the lowest energy conformer. The <inline-formula><mml:math id="M64" display="inline"><mml:mi mathvariant="italic">κ</mml:mi></mml:math></inline-formula> is the tunneling coefficient calculated with the Eckart tunneling method, which uses the energies of the optimized intrinsic reaction coordinate (IRC) endpoints and the magnitude of the imaginary frequency of the lowest energy transition state conformer. The quantum chemical calculations follow the steps detailed in <xref ref-type="bibr" rid="bib1.bibx39" id="text.56"/>. Full conformer sampling of all studied molecules is performed with the Spartan '24 program using the MMFF method. Single-point calculations are performed for the conformers at the B3LYP/6-31<inline-formula><mml:math id="M65" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>G(d) level of theory (henceforth denoted B3LYP) with structures within the cutoff of 5 kcal mol<sup>−1</sup>  in relation to the lowest energy conformer being selected for further optimization. If many conformers are present, an additional geometry optimization at the same B3LYP level is used, and conformers outside a 2 kcal mol<sup>−1</sup> cutoff are rejected. Further density functional theory geometry optimization is done at <inline-formula><mml:math id="M68" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/aug-cc-pVTZ level of theory (denoted <inline-formula><mml:math id="M69" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97 level of theory), with the same level of theory used for the frequency calculation for determining the partition function. Transition states are found by first carrying out constrained optimizations of guess transition state structures, followed by unconstrained transition state optimizations using Gaussian 16 software, both at B3LYP level of theory. Conformer sampling, <inline-formula><mml:math id="M70" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97 optimization and frequency calculations are performed on the lowest energy conformers. Further refining at ROHF-ROCCSD(T)-F12a/VDZ-F12 (abbreviated F12) level of theory is done for the lowest energy conformers of all studied molecules, and the IRC endpoints, whereas <inline-formula><mml:math id="M71" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97 level of theory is used for the relative energies of the conformers. This has been shown to be a cost-effective way to calculate rate coefficients, where as calculating the F12 correction for all conformers increases notably the computational cost with diminishing benefits <xref ref-type="bibr" rid="bib1.bibx39" id="paren.57"/>. CCSD(T) corrections were not performed for H-shift reactions from OH groups, as the F12-level calculations for this reaction class have previously been shown to lead to artifact solutions <xref ref-type="bibr" rid="bib1.bibx40" id="paren.58"/>.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS2">
  <label>3.2.2</label><title>Endocyclization branching ratios of the geminal diol mechanism</title>
      <p id="d2e1363">The formation of BPRs requires 5-member oxygen bridge formation over the location of the newly added <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> group. Forming the bridge this way is important as the H-O interaction makes the endocyclization reaction competitive. This results in a delocalized alkyl radical, which forms a BPR with the addition of <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Ignoring chirality, one geminal diol BPR structure is possible for phenol due to the symmetry of the system, while two are possible for catechol. The endocyclization reactions and, consequently, the formation of geminal diol BPRs, compete with 1,5 <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-shift reactions for phenol and catechol, and an additional <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> loss reaction for catechol specifically. This pathway leads to the formation of a closed shell <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compound containing geminal diol and carbonyl functionalities. The 1,5 <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-shift scheme is illustrated in Fig. <xref ref-type="fig" rid="F3"/>, with the rates given in Table <xref ref-type="table" rid="T1"/>.</p>

      <fig id="F3" specific-use="star"><label>Figure 3</label><caption><p id="d2e1440">Endocyclization. <bold>(a)</bold> For phenol and <bold>(b)</bold> for catechol. Endocyclization has branching ratios of 10 % and 59 % for phenol and catechol respectively.</p></caption>
            <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f03.png"/>

          </fig>

<table-wrap id="T1"><label>Table 1</label><caption><p id="d2e1458">Rate coefficients for the reactions relevant for endocyclization (s<sup>−1</sup>).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Phenol</oasis:entry>
         <oasis:entry colname="col3">Catechol</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">1,5 H-shift</oasis:entry>
         <oasis:entry colname="col2">1.52</oasis:entry>
         <oasis:entry colname="col3">30.87</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Endocyclization</oasis:entry>
         <oasis:entry colname="col2">0.17</oasis:entry>
         <oasis:entry colname="col3">44.68</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Branching ratio</oasis:entry>
         <oasis:entry colname="col2">10.0 %</oasis:entry>
         <oasis:entry colname="col3">59.1 %</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d2e1538">The endocyclization branching ratio is calculated from equation BR<inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi mathvariant="normal">path</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">path</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">total</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>. The tunneling factor is subject to uncertainties due to the labile nature of the product alkyl radical, as discussed in <xref ref-type="bibr" rid="bib1.bibx43" id="text.59"/>. For this reason, a tunneling factor of 18.0 is used in analogy to para-cresol, yielding an endocyclization branching ratio of 10 %. For catechol, the alkyl radical is stable at the B3LYP level of theory and this is used for the tunneling calculations, yielding a branching ratio of 59 %.</p>
      <p id="d2e1570">Due to the asymmetry of the molecule, the <inline-formula><mml:math id="M80" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition to catechol can happen to two different locations and the subsequent chemistry is site-specific (see Fig. <xref ref-type="fig" rid="F3"/>). The <inline-formula><mml:math id="M81" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition to the <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>-substituted carbon leads to termination via <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> loss forming a closed shell carbonyl compound, hindering BPR formation. On the other hand, <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition to the unsubstituted carbon in ortho position relative to the geminal diol carbon lead to endocyclization. The branching between the two <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition sites cannot be accurately determined using quantum chemistry methods. To account for this, two scenarios were considered, corresponding to <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition branching ratios of 10 % and 50 % to the pathway leading to endocyclization. Further details are provided regarding the mechanisms in Table <xref ref-type="table" rid="T2"/> and a sensitivity analysis is conducted in Sect. <xref ref-type="sec" rid="Ch1.S4.SS5.SSS4"/> regarding the endocyclization branching ratio.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS3">
  <label>3.2.3</label><title>Molecular rearrangement</title>
      <p id="d2e1662">Endocyclization is quickly followed by <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition to form a geminal diol BPR, which can undergo a molecular rearrangement reaction as described previously for toluene and other non-oxygenated aromatic hydrocarbons in <xref ref-type="bibr" rid="bib1.bibx22" id="text.60"/>. Phenol has only one geminal diol BPR isomer due to the symmetry of the molecule, whereas catechol has two BPR isomers depending on which carbon the <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> adds to. Both of these have different molecular rearrangement reaction rate coefficients that lead to two unique ring opened peroxy radicals. The molecular rearrangement reaction and the subsequent chemistry is shown in Fig. <xref ref-type="fig" rid="F4"/> for all of these.</p>

      <fig id="F4" specific-use="star"><label>Figure 4</label><caption><p id="d2e1694">Oxidation schemes of phenol- and catechol-derived geminal diol BPRs. <bold>(a)</bold> Molecular rearrangement of the phenol-derived BPR leads to the formation of compounds with 8 oxygen atoms. <bold>(b, c)</bold> Molecular rearrangement of the two catechol-derived BPRs. One leads to compounds with up to 11 oxygen atoms, while the other is unlikely to oxidize beyond 7 oxygen atoms due to a lack of labile H-atoms.</p></caption>
            <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f04.png"/>

          </fig>

      <p id="d2e1709">The molecular rearrangement reaction can proceed in two ways, C<sub>1</sub> or C<sub>2</sub>, depending on which of the two C-C bonds involved in the reaction is broken <xref ref-type="bibr" rid="bib1.bibx22 bib1.bibx43" id="paren.61"/>. The transition state for the C<sub>1</sub> pathway exhibits an intramolecular interaction between the -OO and -OH groups, reducing the reaction barrier of the rearrangement. In the presence of this interaction, the transition state for phenol tends to constantly optimize to C<sub>1</sub> regardless of the bond constraints used. In the case of catechol, both BPRs undergo molecular rearrangement only along one direction as shown in Fig. <xref ref-type="fig" rid="F4"/>. We were unable to find the transition state for the other pathway for either BPR isomer, likely due to the fact that it leads to geminal diol intermediates that are energetically unfavorable.</p>
      <p id="d2e1755">The C<sub>1</sub> pathway for phenol yields a <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> peroxy radical that can undergo a 1,6 aldehydic <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-shift followed by <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition to form a <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> peroxy radical (Fig. <xref ref-type="fig" rid="F4"/>a). This can undergo H-scrambling between the hydroperoxy acyl peroxy and peroxy peroxoic acid radical forms, with the latter being thermodynamically more favoured  <xref ref-type="bibr" rid="bib1.bibx29" id="paren.62"/>. Both forms behave identically in the current mechanism, as the volatility calculation assumes that the peroxy radicals react with HO<sub>2</sub> to form hydroperoxides. To simplify the mechanism in the model, the two catechol BPR isomers are treated as a single system, both with molecular rearrangement rate coefficients of 19.2 s<sup>−1</sup>, leading to an equal 50% yields of ring opened peroxy radicals <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mi mathvariant="normal">a</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M101" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mi mathvariant="normal">b</mml:mi></mml:mrow></mml:math></inline-formula>. The peroxy radical isomer from C<sub>1</sub> (Fig. <xref ref-type="fig" rid="F4"/>c) lacks an obvious labile H-atom and is unlikely to undergo further autoxidation under atmospheric conditions. This is different for the peroxy radical isomer that forms along C<sub>2</sub> (Fig. <xref ref-type="fig" rid="F4"/>b), which can undergo two rapid 1,6 <inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-shift, identical to those shown for benzene BPR in Fig. <xref ref-type="fig" rid="F4"/>, to produce <inline-formula><mml:math id="M105" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">11</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> peroxy radicals. Note that a fraction of the alkyl radical following the first 1,6 <inline-formula><mml:math id="M106" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula>-shift could also terminate to a carbonyl compound by reacting with <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. It is difficult to accurately estimate the branching between radical termination and further autoxidation, so we assume a <inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:mn mathvariant="normal">50</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> ratio here.</p>
      <p id="d2e1991">The possibility of HOM formation via molecular rearrangement of BPRs formed from ortho-position OH addition was considered. Only one molecular rearrangement direction was considered, as the other opening direction leads to the formation of energetically unfavorable geminal diol intermediates. Previously it was found that transition state optimization for structures of this type fails, with the optimization reverting to the acid forming one presented here regardless of the used bond constraints <xref ref-type="bibr" rid="bib1.bibx43" id="paren.63"/>. The reaction and associated rate coefficients are presented in Fig. <xref ref-type="fig" rid="F5"/>. These were found to be too slow to be atmospherically competitive and thus not implemented into the model. However, we note that the molecular rearrangement transition state in Fig. <xref ref-type="fig" rid="F5"/>a suffers from some spin contamination (<inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> value of 0.77), indicating higher uncertainties in the calculated rate coefficient.</p>

      <fig id="F5" specific-use="star"><label>Figure 5</label><caption><p id="d2e2014">Molecular rearrangement of BPRs formed from ortho-position OH addition. The molecular rearrangement rate coefficients were found to be too slow to be atmospherically competitive.</p></caption>
            <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f05.png"/>

          </fig>

      <p id="d2e2023">Termination of the autoxidation mechanism is considered through reactions with <inline-formula><mml:math id="M110" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M111" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula>, forming the hydroperoxide or the nitrated equivalent of the formed peroxy radicals, able to partition. The oxidation of intermediate volatile compounds formed during this process (such as the closed-shell species <inline-formula><mml:math id="M112" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) is incorporated into the model by adding its first-generation products to the mechanism using the GECKO-A algorithm <xref ref-type="bibr" rid="bib1.bibx2" id="paren.64"/>, allowing for the contribution of these products to SOA formation to be accounted for in the quasi-explicit mechanism. Based on these findings, geminal diol BPR rearrangement pathways and the associated products are incorporated into the quasi-explicit benzene mechanism.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Evaluation by comparison to chamber measurements</title>
      <p id="d2e2079">In order to evaluate the quasi-explicit mechanism developed and its ability to reproduce the formation of SOA, model simulations were compared to experimental results obtained from atmospheric chamber experiments from <xref ref-type="bibr" rid="bib1.bibx11" id="text.65"/>. The simulations were performed using the SSH-aerosol v2.0 box model, explicitly representing gas–particle partitioning and multiphase chemical processes <xref ref-type="bibr" rid="bib1.bibx57" id="paren.66"/>.</p>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Presentation of the chemical mechanisms</title>
      <p id="d2e2095">In the evaluation, several chemical schemes are compared, including the original MCM v3.3.1 mechanism, which serves as the baseline for the developments presented here, and four additional mechanisms designed to isolate the effects of the newly implemented pathways and associated uncertainties. An overview of the chemical mechanisms considered in this work is provided in Table <xref ref-type="table" rid="T2"/>. Mech 1 corresponds to MCM v3.3.1 with revised pathways, addition of multi-hydroxylation, peroxy/alkoxy autoxidation, cyclic epoxides formation and BPR rearrangement, as detailed in Sect. <xref ref-type="sec" rid="Ch1.S2"/>. In addition to these pathways, the formation and rearrangement of geminal diol BPRs is taken into account in Mech 2 and Mech 3. The Mech 2 and Mech 3 mechanisms differ in the branching ratios between H-abstraction and <inline-formula><mml:math id="M113" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition for the <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> reaction with catechol, as well as for subsequent reactions involving more highly hydroxylated species formed after further <inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition. Finally, Mech 4 differs from Mech 2 in the endocyclization branching ratios, as described in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2.SSS2"/>.</p>

<table-wrap id="T2" specific-use="star"><label>Table 2</label><caption><p id="d2e2132">Summary table of the benzene oxidation schemes considered in this study. The abs.-add. column describes branching ratios used for OH addition and H abstraction in reactions of phenols with OH. Branching ratio is abbreviated as BR in the header.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Name</oasis:entry>
         <oasis:entry colname="col2">Pathways</oasis:entry>
         <oasis:entry colname="col3">BR abs.-add.</oasis:entry>
         <oasis:entry colname="col4">BR endocycl.</oasis:entry>
         <oasis:entry colname="col5">Nb reactions</oasis:entry>
         <oasis:entry colname="col6">Nb species</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">MCM</oasis:entry>
         <oasis:entry colname="col2">benzene MCM scheme V3.3.1</oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">334</oasis:entry>
         <oasis:entry colname="col6">135</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mech 1</oasis:entry>
         <oasis:entry colname="col2">MCM revised <inline-formula><mml:math id="M116" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> multi-hydroxylation, autoxidation,</oasis:entry>
         <oasis:entry colname="col3">7 %–93 %</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">1494</oasis:entry>
         <oasis:entry colname="col6">1102</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">epoxides,  BPR rearrangement</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mech 2</oasis:entry>
         <oasis:entry colname="col2">Mech 1 <inline-formula><mml:math id="M117" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> geminal diol BPR rearrangement</oasis:entry>
         <oasis:entry colname="col3">7 %–93 %</oasis:entry>
         <oasis:entry colname="col4">50 %</oasis:entry>
         <oasis:entry colname="col5">1766</oasis:entry>
         <oasis:entry colname="col6">1162</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mech 3</oasis:entry>
         <oasis:entry colname="col2">Mech 1 <inline-formula><mml:math id="M118" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> geminal diol BPR rearrangement</oasis:entry>
         <oasis:entry colname="col3">30 %–70 %</oasis:entry>
         <oasis:entry colname="col4">50 %</oasis:entry>
         <oasis:entry colname="col5">1766</oasis:entry>
         <oasis:entry colname="col6">1162</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Mech 4</oasis:entry>
         <oasis:entry colname="col2">Mech 1 <inline-formula><mml:math id="M119" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> geminal diol BPR rearrangement</oasis:entry>
         <oasis:entry colname="col3">7 %–93 %</oasis:entry>
         <oasis:entry colname="col4">10 %</oasis:entry>
         <oasis:entry colname="col5">1766</oasis:entry>
         <oasis:entry colname="col6">1162</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>Presentation of the experiments</title>
      <p id="d2e2345">The set of 16 atmospheric chamber experiments described in  <xref ref-type="bibr" rid="bib1.bibx11" id="text.67"/> covers a broad range of chemical conditions designed to represent aromatic oxidation and SOA formation. The experiments include two precursors: phenol (experiments 1–8) and benzene (experiments 9–16) and explore variability in NO<sub><italic>x</italic></sub> levels, as well as the presence, acidity and concentrations in inorganic seed aerosol. For each precursor, the first two experiments are conducted without seed aerosol, the next two experiments include acidic inorganic seeds and the final four employ neutral seed aerosols. Additional details on NO<sub><italic>x</italic></sub> regimes, seeds nature and meteorological data used are provided in Table <xref ref-type="table" rid="T3"/>.</p>

<table-wrap id="T3" specific-use="star"><label>Table 3</label><caption><p id="d2e2374">Experimental conditions of the phenol and benzene simulations, including NO<sub><italic>x</italic></sub> conditions, initial aerosol seeds, and meteorological data.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left" colsep="1"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:colspec colnum="7" colname="col7" align="left"/>
     <oasis:colspec colnum="8" colname="col8" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Phenol exp.</oasis:entry>
         <oasis:entry colname="col2">NO<sub><italic>x</italic></sub> regime</oasis:entry>
         <oasis:entry colname="col3">Seed type</oasis:entry>
         <oasis:entry colname="col4">Meteo. data<sup>*</sup></oasis:entry>
         <oasis:entry colname="col5">Benzene exp.</oasis:entry>
         <oasis:entry colname="col6">NO<sub><italic>x</italic></sub> regime</oasis:entry>
         <oasis:entry colname="col7">Seed type</oasis:entry>
         <oasis:entry colname="col8">Meteo. data<sup>*</sup></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">1</oasis:entry>
         <oasis:entry colname="col2">high</oasis:entry>
         <oasis:entry colname="col3">no seed</oasis:entry>
         <oasis:entry colname="col4">detailed</oasis:entry>
         <oasis:entry colname="col5">9</oasis:entry>
         <oasis:entry colname="col6">low</oasis:entry>
         <oasis:entry colname="col7">no seed</oasis:entry>
         <oasis:entry colname="col8">detailed</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">2</oasis:entry>
         <oasis:entry colname="col2">low</oasis:entry>
         <oasis:entry colname="col3">no seed</oasis:entry>
         <oasis:entry colname="col4">range</oasis:entry>
         <oasis:entry colname="col5">10</oasis:entry>
         <oasis:entry colname="col6">high</oasis:entry>
         <oasis:entry colname="col7">no seed</oasis:entry>
         <oasis:entry colname="col8">detailed</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">3</oasis:entry>
         <oasis:entry colname="col2">high</oasis:entry>
         <oasis:entry colname="col3">acidic</oasis:entry>
         <oasis:entry colname="col4">detailed</oasis:entry>
         <oasis:entry colname="col5">11</oasis:entry>
         <oasis:entry colname="col6">low</oasis:entry>
         <oasis:entry colname="col7">acidic</oasis:entry>
         <oasis:entry colname="col8">detailed</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">4</oasis:entry>
         <oasis:entry colname="col2">low</oasis:entry>
         <oasis:entry colname="col3">acidic</oasis:entry>
         <oasis:entry colname="col4">range</oasis:entry>
         <oasis:entry colname="col5">12</oasis:entry>
         <oasis:entry colname="col6">high</oasis:entry>
         <oasis:entry colname="col7">acidic</oasis:entry>
         <oasis:entry colname="col8">detailed</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">5</oasis:entry>
         <oasis:entry colname="col2">high</oasis:entry>
         <oasis:entry colname="col3">neutral</oasis:entry>
         <oasis:entry colname="col4">range</oasis:entry>
         <oasis:entry colname="col5">13</oasis:entry>
         <oasis:entry colname="col6">low</oasis:entry>
         <oasis:entry colname="col7">neutral</oasis:entry>
         <oasis:entry colname="col8">detailed</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">6</oasis:entry>
         <oasis:entry colname="col2">high</oasis:entry>
         <oasis:entry colname="col3">neutral</oasis:entry>
         <oasis:entry colname="col4">range</oasis:entry>
         <oasis:entry colname="col5">14</oasis:entry>
         <oasis:entry colname="col6">high</oasis:entry>
         <oasis:entry colname="col7">neutral</oasis:entry>
         <oasis:entry colname="col8">detailed</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">7</oasis:entry>
         <oasis:entry colname="col2">low</oasis:entry>
         <oasis:entry colname="col3">neutral</oasis:entry>
         <oasis:entry colname="col4">range</oasis:entry>
         <oasis:entry colname="col5">15</oasis:entry>
         <oasis:entry colname="col6">low</oasis:entry>
         <oasis:entry colname="col7">neutral</oasis:entry>
         <oasis:entry colname="col8">detailed</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">8</oasis:entry>
         <oasis:entry colname="col2">low</oasis:entry>
         <oasis:entry colname="col3">neutral</oasis:entry>
         <oasis:entry colname="col4">range</oasis:entry>
         <oasis:entry colname="col5">16</oasis:entry>
         <oasis:entry colname="col6">low</oasis:entry>
         <oasis:entry colname="col7">neutral</oasis:entry>
         <oasis:entry colname="col8">detailed</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p id="d2e2386"><sup>*</sup> Detailed meteorological data correspond to time-resolved temperature and relative humidity provided by the experimental team <xref ref-type="bibr" rid="bib1.bibx11" id="paren.68"/>. When only a range minimum and maximum values were available, simulations were performed using mean values.</p></table-wrap-foot></table-wrap>

      <p id="d2e2715">The experiments are conducted over 8 h under natural daylight, with radical production driven by photolysis. To ensure measurable oxidation and SOA formation within the chamber timescale, the initial precursor concentrations are substantially higher than ambient levels, particularly for benzene, which reacts relatively slowly under atmospheric conditions.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>Model presentation and simulation setup</title>
      <p id="d2e2726">The simulations were performed using the SSH-aerosol V2.0 box model <xref ref-type="bibr" rid="bib1.bibx57" id="paren.69"/>, a multiphase chemistry–aerosol box model designed to simulate the evolution of gas-phase chemistry and aerosol composition. Aerosol dynamics and multiphase chemical processes are explicitly represented. Semi-volatile organic compounds may partition between the gas, organic and aqueous phases depending on their physicochemical properties and ambient conditions. The quasi-explicit benzene oxidation mechanism is integrated in the model in order to compare simulated SOA formation from benzene and phenol to the chamber experimental results.</p>
      <p id="d2e2732">Experimental conditions described in <xref ref-type="bibr" rid="bib1.bibx11" id="text.70"/> are used to constrain the initial state of the simulations. The simulations are conducted over eight hours with outputs every five minutes. For all benzene-based experiments, as well as experiments 1 and 3 for phenol, meteorological conditions (temperature, humidity) were provided by <xref ref-type="bibr" rid="bib1.bibx11" id="text.71"/> and updated in the simulations every five minutes. For the remaining experiments, the temperature and relative humidity are prescribed at each time step using the mean values of the ranges reported in the experiment descriptions. Photolysis rates are calculated based on the location of the chamber and the date of the experiments. An attenuation coefficient is applied to these rates to represent the impact of clouds. This coefficient is adjusted so that the amount of precursor consumed at the end of the simulation corresponds to the one obtained experimentally. Initial precursor concentrations range from 79 to 264 ppb for phenol and from 168 to 325  for benzene. Nitrous acid is introduced as an <inline-formula><mml:math id="M128" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> radical source in the benzene experiments only. The initial NO<sub><italic>x</italic></sub> concentration indicated for each experiment is divided between <inline-formula><mml:math id="M130" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M131" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to correspond to the initial concentrations presented in the graphs of <xref ref-type="bibr" rid="bib1.bibx11" id="text.72"/>. The concentrations of inorganic aerosols introduced at the initial state range from 62 to 2201 <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<sup>−3</sup> in the phenol experiments and from 10 to 377 <inline-formula><mml:math id="M134" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<sup>−3</sup> in the benzene experiments.</p>
      <p id="d2e2821">Losses on the simulation chamber walls are included using the parameterizations included in SSH-aerosol <xref ref-type="bibr" rid="bib1.bibx57" id="paren.73"/>. Semi-volatile gas-phase compounds undergo reversible wall uptake controlled by kinetic transfer and wall–gas partitioning. The model parameters  are set to <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi>S</mml:mi><mml:mi>V</mml:mi></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.654</mml:mn></mml:mrow></mml:math></inline-formula> m<sup>−1</sup> for the surface over volume ratio, and to <inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">e</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> s<sup>−1</sup> for the eddy diffusivity coefficient <xref ref-type="bibr" rid="bib1.bibx21" id="paren.74"/>. Particle losses are treated as irreversible first-order processes accounting for diffusion, settling, and turbulence. Wall-loss rates are determined from compound properties and fixed chamber parameters (geometry and eddy diffusivity), assuming a 104 m<sup>3</sup> chamber. To better represent NO<sub><italic>x</italic></sub> chemistry, a wall loss parametrization of <inline-formula><mml:math id="M142" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> representing surface adhesion is implemented in the model following <xref ref-type="bibr" rid="bib1.bibx17" id="text.75"/>. In this parametrization, the heterogeneous loss of <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is represented via a first-order surface uptake process, which depends on an uptake coefficient <inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (assumed to be <inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:mn mathvariant="normal">4.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> as in <xref ref-type="bibr" rid="bib1.bibx17" id="altparen.76"/>), on the temperature and the ratio surface over volume of the chamber.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <label>4.4</label><title>Relative influence of the different pathways</title>
      <p id="d2e2975">Simulated SOA concentrations obtained for the 16 chamber experiments are shown and compared with measurements in Fig. <xref ref-type="fig" rid="F6"/>. Results are presented for three chemical schemes: the reference MCM mechanism, the quasi-explicit Mech 1, and the Mech 2 mechanism, which includes geminal diol chemistry. Experimental observations are indicated by stars.</p>

      <fig id="F6" specific-use="star"><label>Figure 6</label><caption><p id="d2e2982">Simulated SOA concentrations obtained with the MCM (left bars for each experiment), Mech 1 (middle bars), Mech 2 schemes (right bars), and comparison to experimental concentrations (stars on the graph). The left panel represents experiments using phenol as the precursor, while the right panel shows experiments using benzene. The sensitivity to meteorological data is indicated by gray error bars when detailed temperature and relative humidity data is missing.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f06.png"/>

        </fig>

      <fig id="F7" specific-use="star"><label>Figure 7</label><caption><p id="d2e2993">SOA concentrations simulated using Mech 2 and Mech 3 and comparison to experimental concentrations (stars on the graph). The left panel represents experiments using phenol as the precursor, while the right panel shows experiments using benzene.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f07.png"/>

        </fig>

      <p id="d2e3003">Across all 16 experiments, simulations using the MCM scheme systematically strongly underestimate SOA concentrations. These results are consistent with previous studies reporting the lack of representation of HOMs in aromatics chemistry, and motivate the development of quasi-explicit schemes in the first instance. The SOA concentrations are much better represented using the Mech 1 and Mech 2 schemes, within a factor 2 of the experiments, and in most cases within 30 %.</p>
      <p id="d2e3006">The addition of successive hydroxylation steps, radical autoxidation and geminal diol pathway introduces low-volatility compounds, greatly increasing SOA concentrations. These pathways are dominating SOA formation for all experiments, autoxidation being more important when NO<sub><italic>x</italic></sub> levels are low (i.e., experiments 9, 13, 15 and 16) and barely represented in high-NO<sub><italic>x</italic></sub> conditions (experiments 12, 14). The rearrangement pathway from benzene BPR has a low impact on SOA composition due to unfavorable kinetic rate and competition with <inline-formula><mml:math id="M148" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M149" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reactions.</p>
      <p id="d2e3046">Mech 1 tends to slightly overrepresent SOA formation for benzene experiments at low-NO<sub><italic>x</italic></sub> levels such as in the experiments 13, 15 and 16, in which dimers from accretion reactions in the autoxidation scheme account for a large proportion of the simulated SOA. As observed by <xref ref-type="bibr" rid="bib1.bibx11" id="text.77"/>, experiments conducted with acidic seeds (3, 4, 11 and 12) are also overestimated, with the successive hydroxylation pathway dominating SOA formation. The formation of SOA from phenol using neutral seeds (experiments 5 to 8) is strongly underestimated, with simulations yielding SOA concentrations that are up to 1.9 times lower than the experimental values (experiment 6). The gas phase contains numerous compounds of intermediate volatility, notably resulting from the degradation of products formed by the successive oxidation pathway such as <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> carbonyls and quinones resulting from the reaction of catechol with <inline-formula><mml:math id="M152" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>. Uncertainties in the gas/particle partitioning of those compounds may partly explain the discrepancy. The hydration of light aldehydes in the aqueous phase could lead to the formation of additional SOA when seed concentrations are high. Under high relative humidity, this mechanism may partly explain the differences between simulated and observed SOA concentrations in experiments 5, 6, and 8.</p>
      <p id="d2e3081">The introduction of geminal diol chemistry in Mech 2 significantly modifies SOA formation and composition. For most experiments, the concentrations simulated using Mech 2 better reproduce the amount of SOA obtained experimentally. As with Mech 1, low-NO<sub><italic>x</italic></sub> concentrations tend to favor autoxidation while successive hydroxylation and its nitrogen derivatives are more prevalent when NO<sub><italic>x</italic></sub> concentrations are high. In all experiments, the reaction pathway forming geminal diols contributes significantly to the formation of SOA: geminal diol-derived BPRs rearrangement directly competes with the successive hydroxylation pathway and tends to reduce the amount of SOA formed. The addition of this oxidation pathway appears to improve the representation of SOA formation in experiments where Mech 1 overestimate SOA, particularly under conditions in which multi-hydroxylation played a significant role, most notably at high NO<sub><italic>x</italic></sub> conditions (e.g. experiments 3 and 12).</p>
      <p id="d2e3111">In addition to total SOA mass, the simulated particle-phase composition provide some additional information on the mechanisms. The proportion of each functional groups is detailed in Supplement S10 and indicate an important increase in the mass fraction of highly oxygenated SOA, particularly hydroperoxides, at the expense of alkyl and hydroxyl groups. This enhanced contribution of hydroperoxides is qualitavely consistent with <xref ref-type="bibr" rid="bib1.bibx8" id="text.78"/>, who identified hydroperoxides as the dominant functional group in benzene and phenol SOA (see Supplement S11). For comparison with experimental observations on composition, Supplement S11 presents the functional-group composition derived from the benzene oxidation experiments of <xref ref-type="bibr" rid="bib1.bibx8" id="text.79"/>. These measurements indicate a substantial contribution of oxygen-containing species to the particulate phase, including dicarboxylic compounds, while alkyl groups and carbon–carbon double bonds generally account for smaller fractions of the SOA mass, particularly in the experiments with <inline-formula><mml:math id="M156" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. The higher degree of oxygenation and the presence of dicarboxylic compounds observed experimentally are more consistent with the composition predicted by Mech 2 than with Mech 1, providing additional support for the inclusion of the geminal-diol oxidation pathway. As hydroperoxides are not similarly dominant in our simulation, their formation might still be under-estimated in our mechanism. Because organic peroxides can contribute to aerosol oxidative potential <xref ref-type="bibr" rid="bib1.bibx62" id="paren.80"/>, the differences in SOA composition predicted by Mech 2 may have implications for aerosol toxicity.</p>
</sec>
<sec id="Ch1.S4.SS5">
  <label>4.5</label><title>Sensitivity analysis</title>
      <p id="d2e3147">The simulated concentrations are affected by uncertainties related to model choices and to the representation of environmental conditions. Here, the sensitivity of aromatic oxidation to the competition between <inline-formula><mml:math id="M157" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition and abstraction pathways is assessed (Sect. <xref ref-type="sec" rid="Ch1.S4.SS5.SSS1"/>), the influence of meteorological conditions (temperature and relative humidity) for experiments where detailed temporal variations are not available (Sect. <xref ref-type="sec" rid="Ch1.S4.SS5.SSS2"/>), the influence of glyoxal gas/particle partitioning (Sect. <xref ref-type="sec" rid="Ch1.S4.SS5.SSS3"/>) and of the endocyclization branching ratio in the geminal diol BPR rearrangement pathway (Sect. <xref ref-type="sec" rid="Ch1.S4.SS5.SSS4"/>). Further studies conducted on the influence of non-ideality and on nitrophenol saturation vapor pressure are presented in Supplement S6 and S7.</p>
<sec id="Ch1.S4.SS5.SSS1">
  <label>4.5.1</label><title>Influence of addition/abstraction branching ratios</title>
      <p id="d2e3174">To quantify the sensitivity of aromatic oxidation to the competition between <inline-formula><mml:math id="M158" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> addition and abstraction, the chemical schemes Mech 2 and Mech 3 described in Sect. <xref ref-type="sec" rid="Ch1.S4.SS1"/> are compared. For each experiment, the left bars represent the scheme with a 7 % abstraction branching ratio for reactions of benzene and phenols with <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> whereas the right bars represent the 30 % abstraction scheme.</p>

      <fig id="F8" specific-use="star"><label>Figure 8</label><caption><p id="d2e3197">SOA concentrations simulated using Mech 2, Mech 2 <inline-formula><mml:math id="M160" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> IRGLY taking into account the irreversible partitionning of glyoxal and Mech 2 <inline-formula><mml:math id="M161" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> GLYOH taking into account glyoxal hydration. The left panel represents experiments using phenol as the precursor, while the right panel shows experiments using benzene.</p></caption>
            <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f08.png"/>

          </fig>

      <fig id="F9" specific-use="star"><label>Figure 9</label><caption><p id="d2e3222">SOA concentrations simulated using Mech 2 and Mech 4. The left panel represents experiments using phenol as the precursor, while the right panel shows experiments using benzene.</p></caption>
            <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f09.png"/>

          </fig>

      <p id="d2e3232">As illustrated in Fig. 7, in Mech 3, the increase in the branching ratio in favor of abstraction leads to a decrease in the amount of SOA formed under most of the experimental conditions. Diverting the initial oxidation toward abstraction lowers the yield of these SOA-forming pathways, especially under high-NO<sub><italic>x</italic></sub> conditions where abstraction competes with the formation of low-volatility multi-hydroxylated compounds and organonitrates. In low-NO<sub><italic>x</italic></sub> conditions, SOA formation is mainly driven by autoxidation, peroxy and alkoxy radicals formation and accretion reactions, less dependent on multiple <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> additions, lowering the impact of the increased abstraction.</p>
</sec>
<sec id="Ch1.S4.SS5.SSS2">
  <label>4.5.2</label><title>Uncertainty on meteorology</title>
      <p id="d2e3269">For all benzene-based experiments, as well as experiments 1 and 3 for phenol, the temporal variations of meteorological conditions (temperature, humidity) were provided. However, only mean values were prescribed in the other experiments. To assess the impact of these uncertainties on temperature and humidity on the concentrations, the phenol experiments are simulated using the minimum and maximum temperature and humidity observed during the experiments. The error bars shown in Fig. <xref ref-type="fig" rid="F6"/> for experiments 2 and 4 to 8 represent the maximum and minimum SOA concentrations obtained using these extreme values. Experiments 2, 5, and 6 show the highest sensitivity to meteorological variability, associated with large variations in relative humidity and temperature over the course of the experiments. This sensitivity likely contributes to the underestimation of SOA concentrations in these cases when average meteorological conditions are assumed. Conversely, experiment 7 shows little sensitivity to variations in temperature and relative humidity due to the dry nature of the seeds and the average relative humidity level being representative of extreme conditions.</p>
</sec>
<sec id="Ch1.S4.SS5.SSS3">
  <label>4.5.3</label><title>Influence of glyoxal gas/particle partitioning</title>
      <p id="d2e3283">In SSH-aerosol, glyoxal can partition through its dissolution into the particle aqueous phase, where rapid hydration shifts the gas–particle equilibrium toward the condensed phase. In addition to this reversible partitioning process, the model includes an irreversible parametrized reaction that converts glyoxal into a non-volatile product. The impact of hydration and of the irreversible parametrized reaction on the simulated concentrations of the chamber experiments are illustrated in Fig. <xref ref-type="fig" rid="F8"/>.</p>

      <fig id="F10"><label>Figure 10</label><caption><p id="d2e3290">Geographical repartition of the error between the quasi-explicit Mech 2 and the reduced mechanisms.</p></caption>
            <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f10.jpg"/>

          </fig>

      <fig id="F11" specific-use="star"><label>Figure 11</label><caption><p id="d2e3301">Graphical representation of the reduced scheme. Compounds shown with oval frames are VOCs (<inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:msup><mml:mi>P</mml:mi><mml:mi mathvariant="normal">sat</mml:mi></mml:msup><mml:mo>&gt;</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mi mathvariant="normal">−</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> atm), rectangular frames are SVOCs (<inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mi mathvariant="normal">−</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup><mml:mo>&gt;</mml:mo><mml:msup><mml:mi>P</mml:mi><mml:mi mathvariant="normal">sat</mml:mi></mml:msup><mml:mo>&gt;</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mi mathvariant="normal">−</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> atm), hexagons are LVOCs (<inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mi mathvariant="normal">−</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup><mml:mo>&gt;</mml:mo><mml:msup><mml:mi>P</mml:mi><mml:mi mathvariant="normal">sat</mml:mi></mml:msup><mml:mo>&gt;</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mi mathvariant="normal">−</mml:mi><mml:mn mathvariant="normal">13</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> atm) and frameless compounds are radicals. Arrow color indicates the oxidant involved in the reactions.</p></caption>
            <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f11.png"/>

          </fig>

      <p id="d2e3394">The implementation of the parameterization for irreversible glyoxal partitioning leads to increased SOA formation under all experimental conditions and to an overestimation of concentrations, especially for benzene experiments conducted in the presence of seeds (Experiments 11 and 12). Experiments using phenol as a precursor also show an increase in SOA concentrations, although to a much lesser extent. Most glyoxal formation results from the decomposition of the benzene bicyclic alkoxy radical, whose formation pathway competes with phenol formation.</p>
      <p id="d2e3397">On the contrary, the hydration of glyoxal leads to an overall decrease in SOA formation. The formation of hydrated and dihydrated glyoxal increases its uptake in the particulate phase and reduces the availability of glyoxal in the gas phase. This has the effect of reducing the oxidative capacity of the environment as well as the formation of HOMs via benzene oxidation, since the photolysis of glyoxal in the gas phase leads to the formation of <inline-formula><mml:math id="M168" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. This reaction allows for a more accurate representation of SOA concentrations in cases previously overestimated, particularly experiments 4, 13, 15, and 16.</p>

      <fig id="F12" specific-use="star"><label>Figure 12</label><caption><p id="d2e3413">Benzene and phenol SOA composition after short (30 min) and longer (4 h) simulation times in a winter/summer and rural/urban conditions. Compounds representing under 5 % of the SOA mass are aggregated in the “Others” category.</p></caption>
            <graphic xlink:href="https://acp.copernicus.org/articles/26/14749/2026/acp-26-14749-2026-f12.png"/>

          </fig>

</sec>
<sec id="Ch1.S4.SS5.SSS4">
  <label>4.5.4</label><title>Influence of the endocyclization branching ratio</title>
      <p id="d2e3430">Sensitivity simulations are performed using Mech 4 to assess the impact of the branching ratio leading to endocyclization and to compound C6H6O3 in catechol oxidation. Reducing the endocyclization branching ratio from 50 % to 10 % leads to an important decrease in simulated SOA concentrations across most experimental conditions, as seen in Fig. <xref ref-type="fig" rid="F9"/>. This reduction is due to a lower yield of HOMs as a larger fraction of the oxydated precursor mass is redirected toward C6H6O3, whose first oxidation products are more volatile. The reduction in SOA mass formed is particularly pronounced in experiments where SOA formation is strongly influenced by geminal diol chemistry, for which the reduced endocyclization branching leads to a substantial underestimation of aerosol mass relative to chamber observations. Overall, the comparison indicates that the 50 % approximation on endocyclization branching ratio provides a consistent representation of SOA mass observed experimentally.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S5">
  <label>5</label><title>Reduced scheme for 3D atmospheric modeling</title>
      <p id="d2e3446">The quasi-explicit oxidation mechanisms developed in this work provide a detailed description of the chemical processes controlling benzene SOA formation but remain computationally too expensive for direct implementation in three-dimensional chemical transport models. It is reduced with the GENerator of reduced Organic Aerosol mechanisms (GENOA), which is an automated framework designed to generate reduced chemical schemes from explicit mechanisms by retaining species and reactions based on their impact on SOA formation. The reduced chemical schemes enable the integration of aerosol-relevant chemistry into air-quality models while maintaining consistency with the detailed quasi-explicit mechanism.</p>
<sec id="Ch1.S5.SS1">
  <label>5.1</label><title>GENOA model presentation</title>
      <p id="d2e3456">The GENOA v2 algorithm <xref ref-type="bibr" rid="bib1.bibx63" id="paren.81"/> is designed to reduce the size of oxidation mechanisms while maintaining their ability to reproduce SOA formation across a range of VOC precursors and atmospheric conditions, thereby enabling access to detailed SOA composition in 3D simulations. The reduction process relies on several elementary reduction strategies, including removal of species and/or reactions, jumping of an intermediate species, lumping of two similar compounds, and replacement of one by the other. These operations are applied iteratively to the input quasi-explicit scheme and generate a sequence of intermediate simplified mechanisms converging toward a final reduced scheme. After each reduction step, the intermediate mechanism is tested using the 0D box model SSH-aerosol under a set of European atmospheric conditions, to ensure its accuracy compared to the quasi-explicit scheme. User-defined errors control the deviation tolerated from the reference scheme, allowing the generation of reduced mechanisms with different levels of complexity depending on the intended application.</p>
      <p id="d2e3462">As in <xref ref-type="bibr" rid="bib1.bibx63" id="text.82"/> and <xref ref-type="bibr" rid="bib1.bibx55" id="text.83"/>, the GENOA reduction framework relies on a hierarchical evaluation strategy based on three complementary datasets. Throughout the reduction procedure, an eight-condition core dataset is used to evaluate candidate reduced mechanisms, combining six chemically extreme conditions from <xref ref-type="bibr" rid="bib1.bibx63" id="text.84"/> and two additional high-NO<sub><italic>x</italic></sub> urban conditions from <xref ref-type="bibr" rid="bib1.bibx54" id="text.85"/>. To better reflect typical atmospheric variability and test robustness beyond this core set, the evaluation dataset is then expanded to 152 conditions. Finally, a comprehensive testing dataset of 9433 European conditions is used for the final assessment of the reduced mechanism. For all datasets, box-model simulations are performed over five days with different starting times (12:00 am, 07:00 am, 12:00 pm, and 08:00 pm (LT)) to represent both daytime and nighttime chemistry and to capture SOA formation and aging.</p>
</sec>
<sec id="Ch1.S5.SS2">
  <label>5.2</label><title>Mechanism reduction</title>
      <p id="d2e3494">The reduction is carried out in two successive stages. In the first stage, only four reduction strategies are applied in order to simplify the mechanism while largely preserving its original chemical structure and interpretability. During this stage, the tolerated average error relative to the reference mechanism (<inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mtext>mean</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) is gradually increased from 0.5 % to 5 %, while the maximum tolerated error (<inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mtext>max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) increases from 1 % to 30 %. At the end of the first reduction cycle, the mechanism contains 76 reactions and 70 species, including 35 condensable species. It reproduces SOA mass concentrations with an average error of 1.78 % and a maximum error of 13.32 % over the 9433 testing conditions.</p>
      <p id="d2e3519">In the second reduction cycle, additional lumping and jumping strategies are introduced with the specific goal of minimizing the number of condensable species. During this cycle, <inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mtext>mean</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is allowed to increase up to 10 %, while <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mtext>max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> remains at 30 %. The second reduction cycle results in a strongly reduced mechanism, retaining only 30 reactions, 28 species, including 12 condensable, which represents 2.6 % of the original reactions and 1.2 % of the original condensable species.</p>
      <p id="d2e3544">The reduced mechanism resulting from the second reduction cycle reproduces SOA mass concentrations predicted by the Mech 2 mechanism within 3.94 % on average over the 9433 tested conditions, and a maximum error of 22.5 % indicating that the main processes controlling SOA formation from benzene oxidation are well represented and preserved in the reduced scheme. The spatial distribution of the relative error between the reference mechanism Mech 2 and the reduced mechanism is shown in Fig. <xref ref-type="fig" rid="F10"/>. Over most locations, errors remain below 5 %. Errors exceeding 10 % are confined to a limited number of locations, while errors above 15 % are rare and are mainly found over North Italy.</p>
      <p id="d2e3549">As illustrated in Fig. <xref ref-type="fig" rid="F11"/>, the reduced mechanism preserves the main oxidation pathways contributing to SOA formation and identified in Sect. <xref ref-type="sec" rid="Ch1.S4"/>. It contains only 12 condensable species. Regarding the oxidation pathways, the successive hydroxylation, the autoxidation of alkoxy and peroxy radicals and the geminal diol BPR rearrangement pathways are retained. Successive hydroxylation processes lead to the formation of BENZ3OH and BENZ4OH. In high-NO<sub><italic>x</italic></sub> conditions, organonitrates formation is explicitly represented with the formation of nitrocatechol ultimately leading to the highly oxygenated NC4DCO2H or to the NNC_NNC and NPHa_NPHa dimers from accretion reactions. As developed in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>, catechol oxidation and geminal diol BPR rearrangement quickly yields condensable compounds such as species C6H6O4, C6H6O7 and C6H7O12N of the reduced mechanism. Other species represented on the graph result from autoxidation of benzene and phenol BPRs. Termination of the alkoxy and peroxy compounds resulting from the oxidation of phenol BPR is represented through condensable compounds such as C5_uni_O6_O, C5_uni_O6_O, BZo_O9_NO3, BZouni_O6_O and mBZouni_O10_O.</p>
</sec>
</sec>
<sec id="Ch1.S6">
  <label>6</label><title>Evaluation of the main chemical pathways of benzene and phenol SOA formation</title>
      <p id="d2e3576">Identifying the major oxidation products formed under atmospherically relevant conditions is essential for improving our understanding of SOA formation and evolution. Beyond the nature of the products formed, their temporal evolution provides key insight into the dominant chemical pathways, allowing rapidly formed species associated with early oxidation stages to be distinguished from compounds that accumulate or persist on longer timescales. To address this, we analyze oxidation product distributions using box-model simulations conducted with SSH-aerosol under constant oxidant concentrations representative of either rural or urban conditions. Figure <xref ref-type="fig" rid="F12"/> compares the benzene and phenol SOA composition after short (30 min) and longer (4 h) simulation times in a winter/summer and rural/urban conditions and beginning at 12:00 pm, to assess the compounds that are formed efficiently in the early stages of oxidation and those that dominate the system at later stages.</p>
      <p id="d2e3581">The simulations show significant contrasts between urban and rural environments and exhibit a strong seasonal dependence. Stronger photochemical activity and higher <inline-formula><mml:math id="M175" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula> concentrations in summer favor SOA formation via OH addition and geminal diol formation, whereas autoxidation becomes relatively more important in rural environments than in urban settings. It should be noted that, in the present simulations, the peroxy radicals considered are only formed through benzene oxidation. The inclusion of ”background” <inline-formula><mml:math id="M176" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radicals from other precursors would increase the contribution of bimolecular <inline-formula><mml:math id="M177" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reactions and could enhance SOA formation. For benzene, in rural conditions and in urban winter conditions, SOA formation is initially dominated by autoxidation, leading to efficient formation of highly oxygenated products at early oxidation times. In winter, reduced photochemical activity induces lower oxidant levels, resulting in less competition for <inline-formula><mml:math id="M178" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> self-reactions and intramolecular H-shifts. This leads to a dominant contribution of autoxidation products to SOA mass, even in urban conditions. In contrast, urban summer environments exhibit an important influence of the geminal diol pathway. Over time, competition emerges between the direct autoxidation pathways of benzene and the contribution of phenol and catechol via autoxidation along the geminal diol pathway, resulting in an important change in SOA composition between the early stage of oxidation and more aged conditions, especially for urban winter conditions. For phenol, autoxidation is less dependent on seasonal effects, being negligible in the urban environment and accounting for more than 50 % at early stages of oxidation in the rural case. As seen previously for benzene, a substantial fraction of the phenol SOA originates from the geminal diol pathway, with this contribution being particularly pronounced under urban conditions and increasing over time.</p>
</sec>
<sec id="Ch1.S7" sec-type="conclusions">
  <label>7</label><title>Conclusions</title>
      <p id="d2e3633">In this work, we developed a quasi-explicit oxidation mechanism for the formation of benzene and phenol SOAs. This mechanism builds on MCM v3.3.1 and oxidation pathways that are overly simplified or missing are introduced, most notably geminal diol BPRs formation and rearrangement, successive hydroxylation, and peroxy radicals autoxidation, providing a more realistic description of how benzene oxidation progresses toward low-volatility products and SOA formation.</p>
      <p id="d2e3636">Both comparisons to chamber experiments and simulations in atmospheric conditions  show that these pathways play a central role in determining both the concentrations and the molecular composition of benzene and phenol-derived SOAs. Under most conditions, the formation of SOA from benzene is dominated by rearrangement of geminal diol BPRs, accounting on average for 50.0 % of the mass across benzene experiments and 62.8 % for phenol. Successive hydroxylation and peroxy radicals autoxidation, more dependent on NO<sub><italic>x</italic></sub> and OH conditions, account on average for 19.4 % and 28.5 % of benzene SOA formation, respectively. These added pathways allow for a greater precision on modeled SOA concentration, the benzene MCM mechanism reproducing the experimental values with a mean relative error of 83.2 % compared to 28.2 % for the developed mechanism.</p>
      <p id="d2e3648">To bridge the gap between chemical detail and large-scale modeling, the quasi-explicit mechanism was reduced using the GENOA algorithm, from 1772 reactions and 1160 species to 30 reactions and 28 species. Despite this strong reduction in complexity, the reduced mechanism preserves the three main oxidation pathways controlling SOA formation with an average precision of 3.9 %, making it suitable for implementation in three-dimensional air-quality models while remaining consistent with the underlying chemistry. The representation of intraparticle chemistry remains a source of uncertainty. Recent experiments on biomass-burning organic aerosol indicate that photoinduced radical chemistry within particles can lead to fast atmospheric aging <xref ref-type="bibr" rid="bib1.bibx70" id="paren.86"/>. Triplet excited states and other photochemically generated reactive species may be particularly relevant for phenolic compounds, which are abundant in biomass burning emissions.</p>
</sec>

      
      </body>
    <back><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d2e3658">The code SSH-aerosol v2.0 is available in the github platform (<uri>https://github.com/sshaerosol/ssh-aerosol</uri>, last access: 4 June 2026) and on Zenodo: <ext-link xlink:href="https://doi.org/10.5281/zenodo.14196277" ext-link-type="DOI">10.5281/zenodo.14196277</ext-link>  <xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx57" id="paren.87"/>. The chemical mechanisms and raw simulation results used in Sect. <xref ref-type="sec" rid="Ch1.S4"/> are available on Zenodo: <ext-link xlink:href="https://doi.org/10.5281/zenodo.22897984" ext-link-type="DOI">10.5281/zenodo.22897984</ext-link> <xref ref-type="bibr" rid="bib1.bibx33" id="paren.88"/>.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d2e3680">The supplement related to this article is available online at <inline-supplementary-material xlink:href="https://doi.org/10.5194/acp-26-14749-2026-supplement" xlink:title="pdf">https://doi.org/10.5194/acp-26-14749-2026-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d2e3689">ALB and KS designed the research. ALB, KS, SI and AO contributed to the development of the chemical mechanisms considered in this study. ALB and KS conducted the formal analysis. AO and SI performed and analysed the quantum chemistry calculations. ALB performed the box-model simulations and mechanism reduction, and visualized the data. KS and RC supervised the research. ALB, AO, SI and KS wrote the manuscript draft. ZW, VL, FC and RC reviewed and edited the manuscript.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d2e3695">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d2e3702">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. The authors bear the ultimate responsibility for providing appropriate place names. Views expressed in the text are those of the authors and do not necessarily reflect the views of the publisher.</p>
  </notes><ack><title>Acknowledgements</title><p id="d2e3708">We thank the CSC IT Center for Science, Finland, for computing resources. The authors gratefully acknowledge the research team of Jiwon Choi and Myoseon Jang for providing the meteorological data used in this study.  We also thank Lauri Franzon for insightful discussions on benzene oxidation kinetics and autoxidation processes.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d2e3713">This research has been supported by the Agence Nationale de la Recherche (grant no. ANR-21-CE01-0019) and the Research Council of Finland (grant no. 355966).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d2e3719">This paper was edited by Sergey A. Nizkorodov and reviewed by two anonymous referees.</p>
  </notes><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Atkinson et al.(2006)Atkinson, Baulch, Cox, Crowley, Hampson, Hynes, Jenkin, Rossi, Troe, and Subcommittee</label><mixed-citation>Atkinson, R., Baulch, D. L., Cox, R. A., Crowley, J. N., Hampson, R. F., Hynes, R. G., Jenkin, M. E., Rossi, M. J., Troe, J., and Subcommittee, I.: Evaluated kinetic and photochemical data for atmospheric chemistry: Volume II – gas phase reactions of organic species, Atmos. Chem. Phys., 6, 3625–4055, <ext-link xlink:href="https://doi.org/10.5194/acp-6-3625-2006" ext-link-type="DOI">10.5194/acp-6-3625-2006</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx2"><label>Aumont et al.(2005)Aumont, Szopa, and Madronich</label><mixed-citation>Aumont, B., Szopa, S., and Madronich, S.: Modelling the evolution of organic carbon during its gas-phase tropospheric oxidation: development of an explicit model based on a self generating approach, Atmos. Chem. Phys., 5, 2497–2517, <ext-link xlink:href="https://doi.org/10.5194/acp-5-2497-2005" ext-link-type="DOI">10.5194/acp-5-2497-2005</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Baan et al.(2009)Baan, Grosse, Straif, Secretan, Ghissassi, Bouvard, Benbrahim-Tallaa, Guha, Freeman, Galichet, and Cogliano</label><mixed-citation>Baan, R., Grosse, Y., Straif, K., Secretan, B., Ghissassi, F. E., Bouvard, V., Benbrahim-Tallaa, L., Guha, N., Freeman, C., Galichet, L., and Cogliano, V.: A Review of Human Carcinogens – Part F: Chemical Agents and Related Occupations, Lancet Oncol., 10, 1143–1144, <ext-link xlink:href="https://doi.org/10.1016/S1470-2045(09)70358-4" ext-link-type="DOI">10.1016/S1470-2045(09)70358-4</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Bahadar et al.(2014)Bahadar, Mostafalou, and Abdollahi</label><mixed-citation>Bahadar, H., Mostafalou, S., and Abdollahi, M.: Current understandings and perspectives on non-cancer health effects of benzene: A global concern, Toxicol. Appl. Pharmacol., 276, 83–94, <ext-link xlink:href="https://doi.org/10.1016/j.taap.2014.02.012" ext-link-type="DOI">10.1016/j.taap.2014.02.012</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Berndt et al.(2018)Berndt, Scholz, Mentler, Fischer, Herrmann, Kulmala, and Hansel</label><mixed-citation>Berndt, T., Scholz, W., Mentler, B., Fischer, L., Herrmann, H., Kulmala, M., and Hansel, A.: Accretion Product Formation from Self- and Cross-Reactions of RO2 Radicals in the Atmosphere, Angew. Chem. Int. Ed., 57, 3820–3824, <ext-link xlink:href="https://doi.org/10.1002/anie.201710989" ext-link-type="DOI">10.1002/anie.201710989</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Bianchi et al.(2019)Bianchi, Kurtén, Riva, Mohr, Rissanen, Roldin, Berndt, Crounse, Wennberg, Mentel, Wildt, Junninen, Jokinen, Kulmala, Worsnop, Thornton, Donahue, Kjaergaard, and Ehn</label><mixed-citation>Bianchi, F., Kurtén, T., Riva, M., Mohr, C., Rissanen, M. P., Roldin, P., Berndt, T., Crounse, J. D., Wennberg, P. O., Mentel, T. F., Wildt, J., Junninen, H., Jokinen, T., Kulmala, M., Worsnop, D. R., Thornton, J. A., Donahue, N., Kjaergaard, H. G., and Ehn, M.: Highly Oxygenated Organic Molecules (HOM) from Gas-Phase Autoxidation Involving Peroxy Radicals: A Key Contributor to Atmospheric Aerosol, Chem. Rev., 119, 3472–3509, <ext-link xlink:href="https://doi.org/10.1021/acs.chemrev.8b00395" ext-link-type="DOI">10.1021/acs.chemrev.8b00395</ext-link>, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Bloss et al.(2005)Bloss, Wagner, Jenkin, Volkamer, Bloss, Lee, Heard, Wirtz, Martin-Reviejo, Rea, Wenger, and Pilling</label><mixed-citation>Bloss, C., Wagner, V., Jenkin, M. E., Volkamer, R., Bloss, W. J., Lee, J. D., Heard, D. E., Wirtz, K., Martin-Reviejo, M., Rea, G., Wenger, J. C., and Pilling, M. J.: Development of a detailed chemical mechanism (MCMv3.1) for the atmospheric oxidation of aromatic hydrocarbons, Atmos. Chem. Phys., 5, 641–664, <ext-link xlink:href="https://doi.org/10.5194/acp-5-641-2005" ext-link-type="DOI">10.5194/acp-5-641-2005</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Borrás and Tortajada-Genaro(2012)</label><mixed-citation>Borrás, E. and Tortajada-Genaro, L. A.: Secondary Organic Aerosol Formation from the Photo-Oxidation of Benzene, Atmos. Environ., 47, 154–163, <ext-link xlink:href="https://doi.org/10.1016/j.atmosenv.2011.11.020" ext-link-type="DOI">10.1016/j.atmosenv.2011.11.020</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Calvert et al.(2002)Calvert, Atkinson, Becker, Kamens, Seinfeld, Wallington, and Yarwood</label><mixed-citation>Calvert, J., Atkinson, R., Becker, K., Kamens, R., Seinfeld, J., Wallington, T., and Yarwood, G.: The Mechanisms Of Atmospheric Oxidation Of Aromatic Hydrocarbons, Oxford University Press, <ext-link xlink:href="https://doi.org/10.1093/oso/9780195146288.001.0001" ext-link-type="DOI">10.1093/oso/9780195146288.001.0001</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Cheng et al.(2021)Cheng, Chen, Jie Li, Zheng, Liao, and Huang</label><mixed-citation>Cheng, X., Chen, Q., Jie Li, Y., Zheng, Y., Liao, K., and Huang, G.: Highly oxygenated organic molecules produced by the oxidation of benzene and toluene in a wide range of OH exposure and NO<sub><italic>x</italic></sub> conditions, Atmos. Chem. Phys., 21, 12005–12019, <ext-link xlink:href="https://doi.org/10.5194/acp-21-12005-2021" ext-link-type="DOI">10.5194/acp-21-12005-2021</ext-link>, 2021.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Choi et al.(2024)Choi, Jang, and Blau</label><mixed-citation>Choi, J., Jang, M., and Blau, S.: Dual Roles of the Inorganic Aqueous Phase on Secondary Organic Aerosol Growth from Benzene and Phenol, Atmos. Chem. Phys., 24, 6567–6582, <ext-link xlink:href="https://doi.org/10.5194/acp-24-6567-2024" ext-link-type="DOI">10.5194/acp-24-6567-2024</ext-link>, 2024.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Couvidat and Sartelet(2015)</label><mixed-citation>Couvidat, F. and Sartelet, K.: The Secondary Organic Aerosol Processor (SOAP v1.0) model: a unified model with different ranges of complexity based on the molecular surrogate approach, Geosci. Model Dev., 8, 1111–1138, <ext-link xlink:href="https://doi.org/10.5194/gmd-8-1111-2015" ext-link-type="DOI">10.5194/gmd-8-1111-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx13"><label>Couvidat et al.(2012)Couvidat, Debry, Sartelet, and Seigneur</label><mixed-citation>Couvidat, F., Debry, E., Sartelet, K., and Seigneur, C.: A hydrophilic/hydrophobic organic (H<sub>2</sub>O) aerosol model: Development, evaluation and sensitivity analysis, J. Geophys. Res., 117, <ext-link xlink:href="https://doi.org/10.1029/2011JD017214" ext-link-type="DOI">10.1029/2011JD017214</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Crounse et al.(2012)Crounse, Knap, Ørnsø, Jørgensen, Paulot, Kjaergaard, and Wennberg</label><mixed-citation>Crounse, J. D., Knap, H. C., Ørnsø, K. B., Jørgensen, S., Paulot, F., Kjaergaard, H. G., and Wennberg, P. O.: Atmospheric Fate of Methacrolein. 1. Peroxy Radical Isomerization Following Addition of OH and O<sub>2</sub>, J. Phys. Chem. A, 116, 5756–5762, <ext-link xlink:href="https://doi.org/10.1021/jp211560u" ext-link-type="DOI">10.1021/jp211560u</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Donahue et al.(2006)Donahue, Robinson, Stanier, and Pandis</label><mixed-citation>Donahue, N. M., Robinson, A. L., Stanier, C. O., and Pandis, S. N.: Coupled Partitioning, Dilution, and Chemical Aging of Semivolatile Organics, Environ. Sci.  Technol., 40, 2635–2643, <ext-link xlink:href="https://doi.org/10.1021/es052297c" ext-link-type="DOI">10.1021/es052297c</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Finewax et al.(2018)Finewax, de Gouw, and Ziemann</label><mixed-citation>Finewax, Z., de Gouw, J. A., and Ziemann, P. J.: Identification and Quantification of 4-Nitrocatechol Formed from OH and NO<sub>3</sub> Radical-Initiated Reactions of Catechol in Air in the Presence of NO<sub><italic>x</italic></sub>: Implications for Secondary Organic Aerosol Formation from Biomass Burning, Environ. Sci. Technol., 52, 1981–1989, <ext-link xlink:href="https://doi.org/10.1021/acs.est.7b05864" ext-link-type="DOI">10.1021/acs.est.7b05864</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>Fiorentino et al.(2021)Fiorentino, Wortham, and Sartelet</label><mixed-citation>Fiorentino, E.-A., Wortham, H., and Sartelet, K.: Combining homogeneous and heterogeneous chemistry to model inorganic compound concentrations in indoor environments: the H<sup>2</sup>I model (v1.0), Geosci. Model Dev., 14, 2747–2780, <ext-link xlink:href="https://doi.org/10.5194/gmd-14-2747-2021" ext-link-type="DOI">10.5194/gmd-14-2747-2021</ext-link>, 2021.</mixed-citation></ref>
      <ref id="bib1.bibx18"><label>Franzon et al.(2025)Franzon, Savolainen, Iyer, Rissanen, and Kurtén</label><mixed-citation>Franzon, L., Savolainen, A., Iyer, S., Rissanen, M., and Kurtén, T.: Rapid unimolecular reactions of acyl peroxy radicals: extending the structure–activity relationships, Phys. Chem. Chem. Phys., 27, 12 198–12 210, <ext-link xlink:href="https://doi.org/10.1039/D5CP01175B" ext-link-type="DOI">10.1039/D5CP01175B</ext-link>, 2025.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>Fu et al.(2023)Fu, Ma, Liu, Yan, Huang, Chen, Elm, Li, Ding, Pichelstorfer, Xie, Nie, Francisco, and Zhou</label><mixed-citation>Fu, Z., Ma, F., Liu, Y., Yan, C., Huang, D., Chen, J., Elm, J., Li, Y., Ding, A., Pichelstorfer, L., Xie, H.-B., Nie, W., Francisco, J. S., and Zhou, P.: An overlooked oxidation mechanism of toluene: computational predictions and experimental validations, Chem. Sci., 14, 13050–13059, <ext-link xlink:href="https://doi.org/10.1039/D3SC03638C" ext-link-type="DOI">10.1039/D3SC03638C</ext-link>, 2023.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Harrison et al.(2005)Harrison, Heal, and Cape</label><mixed-citation>Harrison, M. A. J., Heal, M. R., and Cape, J. N.: Evaluation of the Pathways of Tropospheric Nitrophenol Formation from Benzene and Phenol Using a Multiphase Model, Atmos. Chem. Phys., 5, 1679–1695, <ext-link xlink:href="https://doi.org/10.5194/acp-5-1679-2005" ext-link-type="DOI">10.5194/acp-5-1679-2005</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx21"><label>Huang et al.(2018)Huang, Zhao, Charan, Kenseth, Zhang, and Seinfeld</label><mixed-citation>Huang, Y., Zhao, R., Charan, S. M., Kenseth, C. M., Zhang, X., and Seinfeld, J. H.: Unified Theory of Vapor–Wall Mass Transport in Teflon-Walled Environmental Chambers, Environ. Sci. Technol., 52, 2134–2142, <ext-link xlink:href="https://doi.org/10.1021/acs.est.7b05575" ext-link-type="DOI">10.1021/acs.est.7b05575</ext-link>, pMID: 29378113, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>Iyer et al.(2023)Iyer, Kumar, Savolainen, Barua, Daub, Pichelstorfer, Roldin, Garmash, Seal, Kurtén, and Rissanen</label><mixed-citation>Iyer, S., Kumar, A., Savolainen, A., Barua, S., Daub, C., Pichelstorfer, L., Roldin, P., Garmash, O., Seal, P., Kurtén, T., and Rissanen, M.: Molecular rearrangement of bicyclic peroxy radicals is a key route to aerosol from aromatics, Nat. Commun., 14, 4984, <ext-link xlink:href="https://doi.org/10.1038/s41467-023-40675-2" ext-link-type="DOI">10.1038/s41467-023-40675-2</ext-link>, 2023.</mixed-citation></ref>
      <ref id="bib1.bibx23"><label>Jacob(2000)</label><mixed-citation>Jacob, D. J.: Introduction to atmospheric chemistry, Princeton University Press, <ext-link xlink:href="https://doi.org/10.1515/9781400841547" ext-link-type="DOI">10.1515/9781400841547</ext-link>, 2000.</mixed-citation></ref>
      <ref id="bib1.bibx24"><label>Jang et al.(2002)Jang, Czoschke, Lee, and Kamens</label><mixed-citation>Jang, M., Czoschke, N., Lee, S., and Kamens, R.: Heterogeneous atmospheric chemistry by acid-catalyzed particle-phase reactions, Science, 298, 814–7, <ext-link xlink:href="https://doi.org/10.1126/science.1075798" ext-link-type="DOI">10.1126/science.1075798</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx25"><label>Jenkin et al.(2003)Jenkin, Saunders, Wagner, and Pilling</label><mixed-citation>Jenkin, M. E., Saunders, S. M., Wagner, V., and Pilling, M. J.: Protocol for the development of the Master Chemical Mechanism, MCM v3 (Part B): tropospheric degradation of aromatic volatile organic compounds, Atmos. Chem. Phys., 3, 181–193, <ext-link xlink:href="https://doi.org/10.5194/acp-3-181-2003" ext-link-type="DOI">10.5194/acp-3-181-2003</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx26"><label>Jenkin et al.(2018)Jenkin, Valorso, Aumont, Rickard, and Wallington</label><mixed-citation>Jenkin, M. E., Valorso, R., Aumont, B., Rickard, A. R., and Wallington, T. J.: Estimation of rate coefficients and branching ratios for gas-phase reactions of OH with aromatic organic compounds for use in automated mechanism construction, Atmos. Chem. Phys., 18, 9329–9349, <ext-link xlink:href="https://doi.org/10.5194/acp-18-9329-2018" ext-link-type="DOI">10.5194/acp-18-9329-2018</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bibx27"><label>Kanakidou et al.(2005)Kanakidou, Seinfeld, Pandis, Barnes, Dentener, Facchini, Dingenen, Ervens, Nenes, Nielsen et al.</label><mixed-citation>Kanakidou, M., Seinfeld, J. H., Pandis, S. N., Barnes, I., Dentener, F. J., Facchini, M. C., Van Dingenen, R., Ervens, B., Nenes, A., Nielsen, C. J., Swietlicki, E., Putaud, J. P., Balkanski, Y., Fuzzi, S., Horth, J., Moortgat, G. K., Winterhalter, R., Myhre, C. E. L., Tsigaridis, K., Vignati, E., Stephanou, E. G., and Wilson, J.: Organic aerosol and global climate modelling: a review, Atmos. Chem. Phys., 5, 1053–1123, <ext-link xlink:href="https://doi.org/10.5194/acp-5-1053-2005" ext-link-type="DOI">10.5194/acp-5-1053-2005</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx28"><label>Kim et al.(2019)Kim, Sartelet, and Couvidat</label><mixed-citation>Kim, Y., Sartelet, K., and Couvidat, F.: Modeling the effect of non-ideality, dynamic mass transfer and viscosity on SOA formation in a 3-D air quality model, Atmos. Chem. Phys., 19, 1241–1261, <ext-link xlink:href="https://doi.org/10.5194/acp-19-1241-2019" ext-link-type="DOI">10.5194/acp-19-1241-2019</ext-link>, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx29"><label>Knap and Jørgensen(2017)</label><mixed-citation>Knap, H. C. and Jørgensen, S.: Rapid Hydrogen Shift Reactions in Acyl Peroxy Radicals,  J. Phys. Chem. A, 121, 1470–1479, <ext-link xlink:href="https://doi.org/10.1021/acs.jpca.6b12787" ext-link-type="DOI">10.1021/acs.jpca.6b12787</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx30"><label>Kroll and Seinfeld(2008)</label><mixed-citation>Kroll, J. H. and Seinfeld, J. H.: Chemistry of Secondary Organic Aerosol: Formation and Evolution of Low-Volatility Organics in the Atmosphere, Atmos. Environ., 42, 3593–3624, <ext-link xlink:href="https://doi.org/10.1016/j.atmosenv.2008.01.003" ext-link-type="DOI">10.1016/j.atmosenv.2008.01.003</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx31"><label>Lan et al.(2004)Lan, Zhang, Li, Vermeulen, Weinberg, Dosemeci, Rappaport, Shen, Alter, Wu, Kopp, Waidyanatha, Rabkin, Guo, Chanock, Hayes, Linet, Kim, Yin, Rothman, and Smith</label><mixed-citation>Lan, Q., Zhang, L., Li, G., Vermeulen, R., Weinberg, R. S., Dosemeci, M., Rappaport, S. M., Shen, M., Alter, B. P., Wu, Y., Kopp, W., Waidyanatha, S., Rabkin, C., Guo, W., Chanock, S., Hayes, R. B., Linet, M., Kim, S., Yin, S., Rothman, N., and Smith, M. T.: Hematotoxicity in Workers Exposed to Low Levels of Benzene, Science, 306, 1774–1776, <ext-link xlink:href="https://doi.org/10.1126/science.1102443" ext-link-type="DOI">10.1126/science.1102443</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx32"><label>Lannuque et al.(2023)Lannuque, D'Anna, Kostenidou, Couvidat, Martinez-Valiente, Eichler, Wisthaler, Müller, Temime-Roussel, Valorso, and Sartelet</label><mixed-citation>Lannuque, V., D'Anna, B., Kostenidou, E., Couvidat, F., Martinez-Valiente, A., Eichler, P., Wisthaler, A., Müller, M., Temime-Roussel, B., Valorso, R., and Sartelet, K.: Gas–particle partitioning of toluene oxidation products: an experimental and modeling study, Atmos. Chem. Phys., 23, 15537–15560, <ext-link xlink:href="https://doi.org/10.5194/acp-23-15537-2023" ext-link-type="DOI">10.5194/acp-23-15537-2023</ext-link>, 2023.</mixed-citation></ref>
      <ref id="bib1.bibx33"><label>Le Bayon(2026)</label><mixed-citation>Le Bayon, A.: Chemical mechanisms and 0D simulation results, Zenodo [data set], <ext-link xlink:href="https://doi.org/10.5281/zenodo.22897984" ext-link-type="DOI">10.5281/zenodo.22897984</ext-link>, 2026.</mixed-citation></ref>
      <ref id="bib1.bibx34"><label>Lin et al.(2012)Lin, Zhang, Docherty, Zhang, Budisulistiorini, Rubitschun, Shaw, Knipping, Edgerton, Kleindienst, Gold, and Surratt</label><mixed-citation>Lin, Y.-H., Zhang, Z., Docherty, K. S., Zhang, H., Budisulistiorini, S. H., Rubitschun, C. L., Shaw, S. L., Knipping, E. M., Edgerton, E. S., Kleindienst, T. E., Gold, A., and Surratt, J. D.: Isoprene Epoxydiols as Precursors to Secondary Organic Aerosol Formation: Acid-Catalyzed Reactive Uptake Studies with Authentic Compounds, Environ. Sci.   Technol., 46, 250–258, <ext-link xlink:href="https://doi.org/10.1021/es202554c" ext-link-type="DOI">10.1021/es202554c</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx35"><label>Luttkus et al.(2024)Luttkus, Hoffmann, Tilgner, Wackermann, Herrmann, and Wolke</label><mixed-citation>Luttkus, M. L., Hoffmann, E. H., Tilgner, A., Wackermann, J., Herrmann, H., and Wolke, R.: URMELL – Part II: semi-explicit isoprene and aromatics gasSOA modelling, Environ. Sci.-Atmos., 4, 1413–1433, <ext-link xlink:href="https://doi.org/10.1039/d4ea00075g" ext-link-type="DOI">10.1039/d4ea00075g</ext-link>, 2024.</mixed-citation></ref>
      <ref id="bib1.bibx36"><label>Majdi et al.(2019)Majdi, Sartelet, Lanzafame, Couvidat, Kim, Chrit, and Turquety</label><mixed-citation>Majdi, M., Sartelet, K., Lanzafame, G. M., Couvidat, F., Kim, Y., Chrit, M., and Turquety, S.: Precursors and formation of secondary organic aerosols from wildfires in the Euro-Mediterranean region, Atmos. Chem. Phys., 19, 5543–5569, <ext-link xlink:href="https://doi.org/10.5194/acp-19-5543-2019" ext-link-type="DOI">10.5194/acp-19-5543-2019</ext-link>, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx37"><label>Mauderly and Chow(2008)</label><mixed-citation>Mauderly, J. L. and Chow, J. C.: Health Effects of Organic Aerosols, Inhal. Toxicol., 20, 257–288, <ext-link xlink:href="https://doi.org/10.1080/08958370701866008" ext-link-type="DOI">10.1080/08958370701866008</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx38"><label>Mohr et al.(2013)Mohr, Lopez-Hilfiker, Zotter, Prévôt, Xu, Ng, Herndon, Williams, Franklin, Zahniser, Worsnop, Knighton, Aiken, Gorkowski, Dubey, Allan, and Thornton</label><mixed-citation>Mohr, C., Lopez-Hilfiker, F. D., Zotter, P., Prévôt, A. S. H., Xu, L., Ng, N. L., Herndon, S. C., Williams, L. R., Franklin, J. P., Zahniser, M. S., Worsnop, D. R., Knighton, W. B., Aiken, A. C., Gorkowski, K. J., Dubey, M. K., Allan, J. D., and Thornton, J. A.: Contribution of Nitrated Phenols to Wood Burning Brown Carbon Light Absorption in Detling, United Kingdom during Winter Time, Environ. Sci. Technol., 47, 6316–6324, <ext-link xlink:href="https://doi.org/10.1021/es400683v" ext-link-type="DOI">10.1021/es400683v</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx39"><label>Møller et al.(2016)Møller, Otkjær, Hyttinen, Kurtén, and Kjaergaard</label><mixed-citation>Møller, K. H., Otkjær, R. V., Hyttinen, N., Kurtén, T., and Kjaergaard, H. G.: Cost-Effective Implementation of Multiconformer Transition State Theory for Peroxy Radical Hydrogen Shift Reactions, J. Phys. Chem. A, 120, 10072–10087, <ext-link xlink:href="https://doi.org/10.1021/acs.jpca.6b09370" ext-link-type="DOI">10.1021/acs.jpca.6b09370</ext-link>,  2016.</mixed-citation></ref>
      <ref id="bib1.bibx40"><label>Møller et al.(2019)Møller, Bates, and Kjaergaard</label><mixed-citation>Møller, K. H., Bates, K. H., and Kjaergaard, H. G.: The Importance of Peroxy Radical Hydrogen-Shift Reactions in Atmospheric Isoprene Oxidation, J. Phys. Chem. A, 123, 920–932, <ext-link xlink:href="https://doi.org/10.1021/acs.jpca.8b10432" ext-link-type="DOI">10.1021/acs.jpca.8b10432</ext-link>, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx41"><label>Nakao et al.(2011)Nakao, Clark, Tang, Sato, and Cocker III</label><mixed-citation>Nakao, S., Clark, C., Tang, P., Sato, K., and Cocker III, D.: Secondary Organic Aerosol Formation from Phenolic Compounds in the Absence of NO<sub><italic>x</italic></sub>, Atmos. Chem. Phys., 11, 10649–10660, <ext-link xlink:href="https://doi.org/10.5194/acp-11-10649-2011" ext-link-type="DOI">10.5194/acp-11-10649-2011</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx42"><label>Odum et al.(1996)Odum, Hoffmann, Bowman, Collins, Flagan, and Seinfeld</label><mixed-citation>Odum, J. R., Hoffmann, T., Bowman, F., Collins, D., Flagan, R. C., and Seinfeld, J. H.: Gas/Particle Partitioning and Secondary Organic Aerosol Yields, Environ. Sci. Technol., 30, 2580–2585, <ext-link xlink:href="https://doi.org/10.1021/es950943+" ext-link-type="DOI">10.1021/es950943+</ext-link>, 1996.</mixed-citation></ref>
      <ref id="bib1.bibx43"><label>Ojala et al.(2025)Ojala, Iyer, Le Bayon, Kumar, Vinkvist, Savolainen, Kervinen, Sartelet, and Rissanen</label><mixed-citation>Ojala, A., Iyer, S., Le Bayon, A., Kumar, A., Vinkvist, N., Savolainen, A., Kervinen, A., Sartelet, K., and Rissanen, M.: Secondary organic aerosol formation from sequential oxidation of toluene and cresols, <ext-link xlink:href="https://doi.org/10.21203/rs.3.rs-7621262/v1" ext-link-type="DOI">10.21203/rs.3.rs-7621262/v1</ext-link>,  2025.</mixed-citation></ref>
      <ref id="bib1.bibx44"><label>Orlando and Tyndall(2012)</label><mixed-citation>Orlando, J. J. and Tyndall, G. S.: Laboratory studies of organic peroxy radical chemistry: an overview with emphasis on recent issues of atmospheric significance, Chem. Soc. Rev., 41, 6294–6317, <ext-link xlink:href="https://doi.org/10.1039/C2CS35166H" ext-link-type="DOI">10.1039/C2CS35166H</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx45"><label>Pankow(1994)</label><mixed-citation>Pankow, J. F.: An absorption model of gas/particle partitioning of organic compounds in the atmosphere, Atmos. Environ., 28, 185–188, <ext-link xlink:href="https://doi.org/10.1016/1352-2310(94)90093-0" ext-link-type="DOI">10.1016/1352-2310(94)90093-0</ext-link>, 1994.</mixed-citation></ref>
      <ref id="bib1.bibx46"><label>Paulot et al.(2009)Paulot, Crounse, Kjaergaard, Kürten, Clair, Seinfeld, and Wennberg</label><mixed-citation>Paulot, F., Crounse, J. D., Kjaergaard, H. G., Kürten, A., Clair, J. M. S., Seinfeld, J. H., and Wennberg, P. O.: Unexpected Epoxide Formation in the Gas-Phase Photooxidation of Isoprene, Science, 325, 730–733, <ext-link xlink:href="https://doi.org/10.1126/science.1172910" ext-link-type="DOI">10.1126/science.1172910</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx47"><label>Peeters and Nguyen(2012)</label><mixed-citation>Peeters, J. and Nguyen, T. L.: Unusually Fast 1,6-H Shifts of Enolic Hydrogens in Peroxy Radicals: Formation of the First-Generation C<sub>2</sub> and C<sub>3</sub> Carbonyls in the Oxidation of Isoprene, J. Phys. Chem. A, 116, 6134–6141, <ext-link xlink:href="https://doi.org/10.1021/jp211447q" ext-link-type="DOI">10.1021/jp211447q</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx48"><label>Pichelstorfer et al.(2024)Pichelstorfer, Roldin, Rissanen, Hyttinen, Garmash, Xavier, Zhou, Clusius, Foreback, Almeida, Deng, Baykara, Kurten, and Boy</label><mixed-citation>Pichelstorfer, L., Roldin, P., Rissanen, M., Hyttinen, N., Garmash, O., Xavier, C., Zhou, P., Clusius, P., Foreback, B., Almeida, T. G., Deng, C., Baykara, M., Kurten, T., and Boy, M.: Towards Automated Inclusion of Autoxidation Chemistry in Models: From Precursors to Atmospheric Implications, Environ. Sci. Atmos., 4, 879–896, <ext-link xlink:href="https://doi.org/10.1039/D4EA00054D" ext-link-type="DOI">10.1039/D4EA00054D</ext-link>, 2024.</mixed-citation></ref>
      <ref id="bib1.bibx49"><label>Piletic et al.(2013)Piletic, Edney, and Bartolotti</label><mixed-citation>Piletic, I., Edney, E., and Bartolotti, L. L.: A computational study of acid catalyzed aerosol reactions of atmospherically relevant epoxides, Phys. Chem. Chem. Phys., 15, <ext-link xlink:href="https://doi.org/10.1039/c3cp52851k" ext-link-type="DOI">10.1039/c3cp52851k</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx50"><label>Pope et al.(2002)Pope, Burnett, Thun, Calle, Krewski, Ito, and Thurston</label><mixed-citation>Pope, C. A., Burnett, R. T., Thun, M. J., Calle, E. E., Krewski, D., Ito, K., and Thurston, G. D.: Lung Cancer, Cardiopulmonary Mortality, and Long-term Exposure to Fine Particulate Air Pollution, J. Am. Med. Assoc., 287, 1132–1141, <ext-link xlink:href="https://doi.org/10.1001/jama.287.9.1132" ext-link-type="DOI">10.1001/jama.287.9.1132</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx51"><label>Priestley et al.(2021)Priestley, Bannan, Le Breton, Worrall, Kang, Pullinen, Schmitt, Tillmann, Kleist, Zhao, Wildt, Garmash, Mehra, Bacak, Shallcross, Kiendler-Scharr, Hallquist, Ehn, Coe, Percival, Hallquist, Mentel, and McFiggans</label><mixed-citation>Priestley, M., Bannan, T. J., Le Breton, M., Worrall, S. D., Kang, S., Pullinen, I., Schmitt, S., Tillmann, R., Kleist, E., Zhao, D., Wildt, J., Garmash, O., Mehra, A., Bacak, A., Shallcross, D. E., Kiendler-Scharr, A., Hallquist, Å. M., Ehn, M., Coe, H., Percival, C. J., Hallquist, M., Mentel, T. F., and McFiggans, G.: Chemical characterisation of benzene oxidation products under high- and low-NO<sub><italic>x</italic></sub> conditions using chemical ionisation mass spectrometry, Atmos. Chem. Phys., 21, 3473–3490, <ext-link xlink:href="https://doi.org/10.5194/acp-21-3473-2021" ext-link-type="DOI">10.5194/acp-21-3473-2021</ext-link>, 2021.</mixed-citation></ref>
      <ref id="bib1.bibx52"><label>Pun et al.(2006)Pun, Seigneur, and Lohman</label><mixed-citation>Pun, B. K., Seigneur, C., and Lohman, K.: Modeling Secondary Organic Aerosol Formation via Multiphase Partitioning with Molecular Data, Environ. Sci. Technol., 40, 4722–4731, <ext-link xlink:href="https://doi.org/10.1021/es0522736" ext-link-type="DOI">10.1021/es0522736</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx53"><label>Reimann and Lewis(2007)</label><mixed-citation>Reimann, S. and Lewis, A. C.: Anthropogenic VOCs, Chap. 2,  33–81, John Wiley &amp; Sons, Ltd, ISBN 9780470988657, <ext-link xlink:href="https://doi.org/10.1002/9780470988657.ch2" ext-link-type="DOI">10.1002/9780470988657.ch2</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx54"><label>Sarica et al.(2023)Sarica, Sartelet, Roustan, Kim, Lugon, Marques, D'Anna, Chaillou, and Larrie</label><mixed-citation>Sarica, T., Sartelet, K., Roustan, Y., Kim, Y., Lugon, L., Marques, B., D'Anna, B., Chaillou, C., and Larrie, C.: Sensitivity of pollutant concentrations in urban streets to asphalt and traffic-related emissions, Environ. Poll., 332, 121955, <ext-link xlink:href="https://doi.org/10.1016/j.envpol.2023.121955" ext-link-type="DOI">10.1016/j.envpol.2023.121955</ext-link>, 2023.</mixed-citation></ref>
      <ref id="bib1.bibx55"><label>Sartelet et al.(2024a)Sartelet, Wang, Lannuque, Iyer, Couvidat, and Sarica</label><mixed-citation>Sartelet, K., Wang, Z., Lannuque, V., Iyer, S., Couvidat, F., and Sarica, T.: Modelling molecular composition of SOA from toluene photo-oxidation at urban and street scales, Environ. Sci. Atmos., 4, 839–847, <ext-link xlink:href="https://doi.org/10.1039/D4EA00049H" ext-link-type="DOI">10.1039/D4EA00049H</ext-link>, 2024a.</mixed-citation></ref>
      <ref id="bib1.bibx56"><label>Sartelet et al.(2024b)</label><mixed-citation>Sartelet, K., Couvidat, F., Wang, Z., Lannuque, V., and Kim, Y.: SSH-aerosol: a modular box model to simulate the evolution of primary and secondary aerosols (Version 2.0), Zenodo [code], <ext-link xlink:href="https://doi.org/10.5281/zenodo.14196277" ext-link-type="DOI">10.5281/zenodo.14196277</ext-link>, 2024b.</mixed-citation></ref>
      <ref id="bib1.bibx57"><label>Sartelet et al.(2026)Sartelet, Wang, Kim, Lannuque, and Couvidat</label><mixed-citation>Sartelet, K., Wang, Z., Kim, Y., Lannuque, V., and Couvidat, F.: Advanced modeling of gas chemistry and aerosol dynamics with SSH-aerosol v2.0, Geosci. Model Dev., 19, 389–421, <ext-link xlink:href="https://doi.org/10.5194/gmd-19-389-2026" ext-link-type="DOI">10.5194/gmd-19-389-2026</ext-link>, 2026.</mixed-citation></ref>
      <ref id="bib1.bibx58"><label>Schwantes et al.(2017)Schwantes, Schilling, Mcvay, Lignell, Coggon, Zhang, Wennberg, and Seinfeld</label><mixed-citation>Schwantes, R., Schilling, K., Mcvay, R., Lignell, H., Coggon, M., Zhang, X., Wennberg, P., and Seinfeld, J.: Formation of highly oxygenated low-volatility products from cresol oxidation, Atmos. Chem. Phys., 17, 3453–3474, <ext-link xlink:href="https://doi.org/10.5194/acp-17-3453-2017" ext-link-type="DOI">10.5194/acp-17-3453-2017</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx59"><label>Sun et al.(2008)Sun, Trabue, Scoggin, Jackson, Pan, Zhao, Malkina, Koziel, and Mitloehner</label><mixed-citation>Sun, H., Trabue, S. L., Scoggin, K., Jackson, W. A., Pan, Y., Zhao, Y., Malkina, I. L., Koziel, J. A., and Mitloehner, F. M.: Alcohol, Volatile Fatty Acid, Phenol, and Methane Emissions from Dairy Cows and Fresh Manure, J. Environ. Qual., 37, 615–622, <ext-link xlink:href="https://doi.org/10.2134/jeq2007.0357" ext-link-type="DOI">10.2134/jeq2007.0357</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx60"><label>Wang et al.(2013)Wang, Wu, and Xu</label><mixed-citation>Wang, L., Wu, R., and Xu, C.: Atmospheric Oxidation Mechanism of Benzene. Fates of Alkoxy Radical Intermediates and Revised Mechanism, J. Phys. Chem. A, 117, 14163–14168, <ext-link xlink:href="https://doi.org/10.1021/jp4101762" ext-link-type="DOI">10.1021/jp4101762</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx61"><label>Wang et al.(2020)Wang, Newland, Deng, Rickard, Hamilton, Muñoz, Ródenas, Vázquez, Wang, and Wang</label><mixed-citation>Wang, S., Newland, M. J., Deng, W., Rickard, A. R., Hamilton, J. F., Muñoz, A., Ródenas, M., Vázquez, M. M., Wang, L., and Wang, X.: Aromatic Photo-oxidation, A New Source of Atmospheric Acidity, Environ. Sci. Technol., 54, 7798–7806, <ext-link xlink:href="https://doi.org/10.1021/acs.est.0c00526" ext-link-type="DOI">10.1021/acs.est.0c00526</ext-link>, 2020. </mixed-citation></ref>
      <ref id="bib1.bibx62"><label>Wang et al.(2023a)Wang, Zhao, Chan, Yao, Chen, and Abbatt</label><mixed-citation>Wang, S., Zhao, Y., Chan, A. W. H., Yao, M., Chen, Z., and Abbatt, J. P. D.: Organic Peroxides in Aerosol: Key Reactive Intermediates for Multiphase Processes in the Atmosphere, Chem. Rev., 123, 1635–1679, <ext-link xlink:href="https://doi.org/10.1021/acs.chemrev.2c00430" ext-link-type="DOI">10.1021/acs.chemrev.2c00430</ext-link>, 2023a.</mixed-citation></ref>
      <ref id="bib1.bibx63"><label>Wang et al.(2022)Wang, Couvidat, and Sartelet</label><mixed-citation>Wang, Z., Couvidat, F., and Sartelet, K.: GENerator of reduced Organic Aerosol mechanism (GENOA v1.0): an automatic generation tool of semi-explicit mechanisms, Geosci. Model Dev., 15, 8957–8982, <ext-link xlink:href="https://doi.org/10.5194/gmd-15-8957-2022" ext-link-type="DOI">10.5194/gmd-15-8957-2022</ext-link>, 2022.</mixed-citation></ref>
      <ref id="bib1.bibx64"><label>Wang et al.(2023b)Wang, Couvidat, and Sartelet</label><mixed-citation>Wang, Z., Couvidat, F., and Sartelet, K.: Implementation of a parallel reduction algorithm in the GENerator of reduced Organic Aerosol mechanisms (GENOA v2.0): Application to multiple monoterpene aerosol precursors, J. Aerosol Sci., 174, 106248, <ext-link xlink:href="https://doi.org/10.1016/j.jaerosci.2023.106248" ext-link-type="DOI">10.1016/j.jaerosci.2023.106248</ext-link>, 2023b.</mixed-citation></ref>
      <ref id="bib1.bibx65"><label>Wang et al.(2024)Wang, Couvidat, and Sartelet</label><mixed-citation>Wang, Z., Couvidat, F., and Sartelet, K.: Response of biogenic secondary organic aerosol formation to anthropogenic NO<sub><italic>x</italic></sub> emission mitigation, Sci. Total Environ., 927, 172142, <ext-link xlink:href="https://doi.org/10.1016/j.scitotenv.2024.172142" ext-link-type="DOI">10.1016/j.scitotenv.2024.172142</ext-link>, 2024.</mixed-citation></ref>
      <ref id="bib1.bibx66"><label>Weisel(2010)</label><mixed-citation>Weisel, C. P.: Benzene Exposure: An Overview of Monitoring Methods and Their Findings, Chem.-Biol. Interact., 184, 58–66, <ext-link xlink:href="https://doi.org/10.1016/j.cbi.2009.12.030" ext-link-type="DOI">10.1016/j.cbi.2009.12.030</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx67"><label>Wieser et al.(2024)Wieser, Sander, Cho, Fuchs, Hohaus, Novelli, Tillmann, and Taraborrelli</label><mixed-citation>Wieser, F., Sander, R., Cho, C., Fuchs, H., Hohaus, T., Novelli, A., Tillmann, R., and Taraborrelli, D.: Development of a Multiphase Chemical Mechanism to Improve Secondary Organic Aerosol Formation in CAABA/MECCA (Version 4.7.0), Geosci. Model Dev., 17, 4311–4330, <ext-link xlink:href="https://doi.org/10.5194/gmd-17-4311-2024" ext-link-type="DOI">10.5194/gmd-17-4311-2024</ext-link>, 2024.</mixed-citation></ref>
      <ref id="bib1.bibx68"><label>Xu et al.(2020)Xu, Møller, Crounse, Kjaergaard, and Wennberg</label><mixed-citation>Xu, L., Møller, K. H., Crounse, J. D., Kjaergaard, H. G., and Wennberg, P. O.: New Insights into the Radical Chemistry and Product Distribution in the OH-Initiated Oxidation of Benzene, Environ. Sci. Technol., 54, 13467–13477, <ext-link xlink:href="https://doi.org/10.1021/acs.est.0c04780" ext-link-type="DOI">10.1021/acs.est.0c04780</ext-link>, 2020.</mixed-citation></ref>
      <ref id="bib1.bibx69"><label>Zaytsev et al.(2019)Zaytsev, Koss, Breitenlechner, Krechmer, Nihill, Lim, Rowe, Cox, Moss, Roscioli, Canagaratna, Worsnop, Kroll, and Keutsch</label><mixed-citation>Zaytsev, A., Koss, A. R., Breitenlechner, M., Krechmer, J. E., Nihill, K. J., Lim, C. Y., Rowe, J. C., Cox, J. L., Moss, J., Roscioli, J. R., Canagaratna, M. R., Worsnop, D. R., Kroll, J. H., and Keutsch, F. N.: Mechanistic study of the formation of ring-retaining and ring-opening products from the oxidation of aromatic compounds under urban atmospheric conditions, Atmos. Chem. Phys., 19, 15117–15129, <ext-link xlink:href="https://doi.org/10.5194/acp-19-15117-2019" ext-link-type="DOI">10.5194/acp-19-15117-2019</ext-link>, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx70"><label>Zhang et al.(2026)Zhang, Cheung, Decker, Surdu, Bogler, Li, Wang, Modini, Slowik, Pagonis, Guo, Campuzano-Jost, Jimenez, Coggon, Gkatzelis, Warneke, Hall, Ullmann, Diskin, Digangi, Peischl, Holmes, Zhou, Zhang, Bell, El Haddad, and Prevot</label><mixed-citation>Zhang, J., Cheung, R. K. Y., Decker, Z. C. J., Surdu, M., Bogler, S., Li, K., Wang, T., Modini, R. L., Slowik, J. G., Pagonis, D., Guo, H., Campuzano-Jost, P., Jimenez, J. L., Coggon, M. M., Gkatzelis, G. I., Warneke, C., Hall, S. R., Ullmann, K., Diskin, G. S., Digangi, J. P., Peischl, J., Holmes, C. D., Zhou, S., Zhang, Q., Bell, D. M., El Haddad, I., and Prevot, A. S. H.: Photoinduced Intraparticle Chemistry Drives the Rapid Atmospheric Oxidation of Biomass Burning Organic Aerosol, Environ. Sci. Technol., 60, 24206–24216, <ext-link xlink:href="https://doi.org/10.1021/acs.est.6c02532" ext-link-type="DOI">10.1021/acs.est.6c02532</ext-link>, 2026.</mixed-citation></ref>

  </ref-list></back>
    <!--<article-title-html>Molecular representation of benzene and phenol secondary organic aerosols</article-title-html>
<abstract-html/>
<ref-html id="bib1.bib1"><label>Atkinson et al.(2006)Atkinson, Baulch, Cox, Crowley, Hampson, Hynes,
Jenkin, Rossi, Troe, and Subcommittee</label><mixed-citation>
      
Atkinson, R., Baulch, D. L., Cox, R. A., Crowley, J. N., Hampson, R. F., Hynes,
R. G., Jenkin, M. E., Rossi, M. J., Troe, J., and Subcommittee, I.:
Evaluated kinetic and photochemical data for atmospheric chemistry: Volume
II – gas phase reactions of organic species, Atmos. Chem. Phys., 6,
3625–4055, <a href="https://doi.org/10.5194/acp-6-3625-2006" target="_blank">https://doi.org/10.5194/acp-6-3625-2006</a>, 2006.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>Aumont et al.(2005)Aumont, Szopa, and
Madronich</label><mixed-citation>
      
Aumont, B., Szopa, S., and Madronich, S.: Modelling the evolution of organic
carbon during its gas-phase tropospheric oxidation: development of an
explicit model based on a self generating approach, Atmos. Chem. Phys., 5,
2497–2517, <a href="https://doi.org/10.5194/acp-5-2497-2005" target="_blank">https://doi.org/10.5194/acp-5-2497-2005</a>, 2005.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Baan et al.(2009)Baan, Grosse, Straif, Secretan, Ghissassi, Bouvard,
Benbrahim-Tallaa, Guha, Freeman, Galichet, and Cogliano</label><mixed-citation>
      
Baan, R., Grosse, Y., Straif, K., Secretan, B., Ghissassi, F. E., Bouvard, V.,
Benbrahim-Tallaa, L., Guha, N., Freeman, C., Galichet, L., and Cogliano, V.:
A Review of Human Carcinogens – Part F: Chemical Agents and Related
Occupations, Lancet Oncol., 10, 1143–1144,
<a href="https://doi.org/10.1016/S1470-2045(09)70358-4" target="_blank">https://doi.org/10.1016/S1470-2045(09)70358-4</a>, 2009.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Bahadar et al.(2014)Bahadar, Mostafalou, and Abdollahi</label><mixed-citation>
      
Bahadar, H., Mostafalou, S., and Abdollahi, M.: Current understandings and
perspectives on non-cancer health effects of benzene: A global concern,
Toxicol. Appl. Pharmacol., 276, 83–94,
<a href="https://doi.org/10.1016/j.taap.2014.02.012" target="_blank">https://doi.org/10.1016/j.taap.2014.02.012</a>, 2014.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Berndt et al.(2018)Berndt, Scholz, Mentler, Fischer, Herrmann,
Kulmala, and Hansel</label><mixed-citation>
      
Berndt, T., Scholz, W., Mentler, B., Fischer, L., Herrmann, H., Kulmala, M.,
and Hansel, A.: Accretion Product Formation from Self- and Cross-Reactions
of RO2 Radicals in the Atmosphere, Angew. Chem. Int. Ed., 57, 3820–3824,
<a href="https://doi.org/10.1002/anie.201710989" target="_blank">https://doi.org/10.1002/anie.201710989</a>, 2018.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Bianchi et al.(2019)Bianchi, Kurtén, Riva, Mohr, Rissanen,
Roldin, Berndt, Crounse, Wennberg, Mentel, Wildt, Junninen, Jokinen, Kulmala,
Worsnop, Thornton, Donahue, Kjaergaard, and Ehn</label><mixed-citation>
      
Bianchi, F., Kurtén, T., Riva, M., Mohr, C., Rissanen, M. P., Roldin, P.,
Berndt, T., Crounse, J. D., Wennberg, P. O., Mentel, T. F., Wildt, J.,
Junninen, H., Jokinen, T., Kulmala, M., Worsnop, D. R., Thornton, J. A.,
Donahue, N., Kjaergaard, H. G., and Ehn, M.: Highly Oxygenated Organic
Molecules (HOM) from Gas-Phase Autoxidation Involving Peroxy Radicals: A Key
Contributor to Atmospheric Aerosol, Chem. Rev., 119, 3472–3509,
<a href="https://doi.org/10.1021/acs.chemrev.8b00395" target="_blank">https://doi.org/10.1021/acs.chemrev.8b00395</a>, 2019.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>Bloss et al.(2005)Bloss, Wagner, Jenkin, Volkamer, Bloss, Lee, Heard,
Wirtz, Martin-Reviejo, Rea, Wenger, and Pilling</label><mixed-citation>
      
Bloss, C., Wagner, V., Jenkin, M. E., Volkamer, R., Bloss, W. J., Lee, J. D.,
Heard, D. E., Wirtz, K., Martin-Reviejo, M., Rea, G., Wenger, J. C., and
Pilling, M. J.: Development of a detailed chemical mechanism (MCMv3.1) for
the atmospheric oxidation of aromatic hydrocarbons, Atmos. Chem. Phys., 5,
641–664, <a href="https://doi.org/10.5194/acp-5-641-2005" target="_blank">https://doi.org/10.5194/acp-5-641-2005</a>, 2005.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>Borrás and Tortajada-Genaro(2012)</label><mixed-citation>
      
Borrás, E. and Tortajada-Genaro, L. A.: Secondary Organic Aerosol Formation
from the Photo-Oxidation of Benzene, Atmos. Environ., 47, 154–163,
<a href="https://doi.org/10.1016/j.atmosenv.2011.11.020" target="_blank">https://doi.org/10.1016/j.atmosenv.2011.11.020</a>, 2012.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Calvert et al.(2002)Calvert, Atkinson, Becker, Kamens, Seinfeld,
Wallington, and Yarwood</label><mixed-citation>
      
Calvert, J., Atkinson, R., Becker, K., Kamens, R., Seinfeld, J., Wallington,
T., and Yarwood, G.: The Mechanisms Of Atmospheric Oxidation Of Aromatic
Hydrocarbons, Oxford University Press,
<a href="https://doi.org/10.1093/oso/9780195146288.001.0001" target="_blank">https://doi.org/10.1093/oso/9780195146288.001.0001</a>, 2002.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Cheng et al.(2021)Cheng, Chen, Jie Li, Zheng, Liao, and
Huang</label><mixed-citation>
      
Cheng, X., Chen, Q., Jie Li, Y., Zheng, Y., Liao, K., and Huang, G.: Highly
oxygenated organic molecules produced by the oxidation of benzene and toluene
in a wide range of OH exposure and NO<sub><i>x</i></sub> conditions, Atmos. Chem. Phys.,
21, 12005–12019, <a href="https://doi.org/10.5194/acp-21-12005-2021" target="_blank">https://doi.org/10.5194/acp-21-12005-2021</a>, 2021.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Choi et al.(2024)Choi, Jang, and Blau</label><mixed-citation>
      
Choi, J., Jang, M., and Blau, S.: Dual Roles of the Inorganic Aqueous Phase on
Secondary Organic Aerosol Growth from Benzene and Phenol, Atmos. Chem.
Phys., 24, 6567–6582, <a href="https://doi.org/10.5194/acp-24-6567-2024" target="_blank">https://doi.org/10.5194/acp-24-6567-2024</a>, 2024.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>Couvidat and Sartelet(2015)</label><mixed-citation>
      
Couvidat, F. and Sartelet, K.: The Secondary Organic Aerosol Processor (SOAP
v1.0) model: a unified model with different ranges of complexity based on the
molecular surrogate approach, Geosci. Model Dev., 8, 1111–1138,
<a href="https://doi.org/10.5194/gmd-8-1111-2015" target="_blank">https://doi.org/10.5194/gmd-8-1111-2015</a>, 2015.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>Couvidat et al.(2012)Couvidat, Debry, Sartelet, and
Seigneur</label><mixed-citation>
      
Couvidat, F., Debry, E., Sartelet, K., and Seigneur, C.: A
hydrophilic/hydrophobic organic (H<sub>2</sub>O) aerosol model: Development, evaluation
and sensitivity analysis, J. Geophys. Res., 117, <a href="https://doi.org/10.1029/2011JD017214" target="_blank">https://doi.org/10.1029/2011JD017214</a>,
2012.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Crounse et al.(2012)Crounse, Knap, Ørnsø, Jørgensen, Paulot,
Kjaergaard, and Wennberg</label><mixed-citation>
      
Crounse, J. D., Knap, H. C., Ørnsø, K. B., Jørgensen, S., Paulot, F.,
Kjaergaard, H. G., and Wennberg, P. O.: Atmospheric Fate of Methacrolein. 1.
Peroxy Radical Isomerization Following Addition of OH and O<sub>2</sub>, J. Phys. Chem.
A, 116, 5756–5762, <a href="https://doi.org/10.1021/jp211560u" target="_blank">https://doi.org/10.1021/jp211560u</a>, 2012.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Donahue et al.(2006)Donahue, Robinson, Stanier, and
Pandis</label><mixed-citation>
      
Donahue, N. M., Robinson, A. L., Stanier, C. O., and Pandis, S. N.: Coupled
Partitioning, Dilution, and Chemical Aging of Semivolatile Organics, Environ.
Sci.  Technol., 40, 2635–2643, <a href="https://doi.org/10.1021/es052297c" target="_blank">https://doi.org/10.1021/es052297c</a>, 2006.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Finewax et al.(2018)Finewax, de Gouw, and Ziemann</label><mixed-citation>
      
Finewax, Z., de Gouw, J. A., and Ziemann, P. J.: Identification and
Quantification of 4-Nitrocatechol Formed from OH and NO<sub>3</sub> Radical-Initiated
Reactions of Catechol in Air in the Presence of NO<sub><i>x</i></sub>: Implications for
Secondary Organic Aerosol Formation from Biomass Burning, Environ. Sci.
Technol., 52, 1981–1989, <a href="https://doi.org/10.1021/acs.est.7b05864" target="_blank">https://doi.org/10.1021/acs.est.7b05864</a>, 2018.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>Fiorentino et al.(2021)Fiorentino, Wortham, and
Sartelet</label><mixed-citation>
      
Fiorentino, E.-A., Wortham, H., and Sartelet, K.: Combining homogeneous and
heterogeneous chemistry to model inorganic compound concentrations in indoor
environments: the H<sup>2</sup>I model (v1.0), Geosci. Model Dev., 14, 2747–2780,
<a href="https://doi.org/10.5194/gmd-14-2747-2021" target="_blank">https://doi.org/10.5194/gmd-14-2747-2021</a>, 2021.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>Franzon et al.(2025)Franzon, Savolainen, Iyer, Rissanen, and
Kurtén</label><mixed-citation>
      
Franzon, L., Savolainen, A., Iyer, S., Rissanen, M., and Kurtén, T.: Rapid
unimolecular reactions of acyl peroxy radicals: extending the
structure–activity relationships, Phys. Chem. Chem. Phys., 27,
12&thinsp;198–12&thinsp;210, <a href="https://doi.org/10.1039/D5CP01175B" target="_blank">https://doi.org/10.1039/D5CP01175B</a>, 2025.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>Fu et al.(2023)Fu, Ma, Liu, Yan, Huang, Chen, Elm, Li, Ding,
Pichelstorfer, Xie, Nie, Francisco, and Zhou</label><mixed-citation>
      
Fu, Z., Ma, F., Liu, Y., Yan, C., Huang, D., Chen, J., Elm, J., Li, Y., Ding,
A., Pichelstorfer, L., Xie, H.-B., Nie, W., Francisco, J. S., and Zhou, P.:
An overlooked oxidation mechanism of toluene: computational predictions and
experimental validations, Chem. Sci., 14, 13050–13059,
<a href="https://doi.org/10.1039/D3SC03638C" target="_blank">https://doi.org/10.1039/D3SC03638C</a>, 2023.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>Harrison et al.(2005)Harrison, Heal, and Cape</label><mixed-citation>
      
Harrison, M. A. J., Heal, M. R., and Cape, J. N.: Evaluation of the Pathways
of Tropospheric Nitrophenol Formation from Benzene and Phenol Using a
Multiphase Model, Atmos. Chem. Phys., 5, 1679–1695,
<a href="https://doi.org/10.5194/acp-5-1679-2005" target="_blank">https://doi.org/10.5194/acp-5-1679-2005</a>, 2005.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>Huang et al.(2018)Huang, Zhao, Charan, Kenseth, Zhang, and
Seinfeld</label><mixed-citation>
      
Huang, Y., Zhao, R., Charan, S. M., Kenseth, C. M., Zhang, X., and Seinfeld,
J. H.: Unified Theory of Vapor–Wall Mass Transport in Teflon-Walled
Environmental Chambers, Environ. Sci. Technol., 52, 2134–2142,
<a href="https://doi.org/10.1021/acs.est.7b05575" target="_blank">https://doi.org/10.1021/acs.est.7b05575</a>, pMID: 29378113, 2018.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>Iyer et al.(2023)Iyer, Kumar, Savolainen, Barua, Daub, Pichelstorfer,
Roldin, Garmash, Seal, Kurtén, and Rissanen</label><mixed-citation>
      
Iyer, S., Kumar, A., Savolainen, A., Barua, S., Daub, C., Pichelstorfer, L.,
Roldin, P., Garmash, O., Seal, P., Kurtén, T., and Rissanen, M.: Molecular
rearrangement of bicyclic peroxy radicals is a key route to aerosol from
aromatics, Nat. Commun., 14, 4984, <a href="https://doi.org/10.1038/s41467-023-40675-2" target="_blank">https://doi.org/10.1038/s41467-023-40675-2</a>, 2023.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>Jacob(2000)</label><mixed-citation>
      
Jacob, D. J.: Introduction to atmospheric chemistry, Princeton University
Press, <a href="https://doi.org/10.1515/9781400841547" target="_blank">https://doi.org/10.1515/9781400841547</a>, 2000.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>Jang et al.(2002)Jang, Czoschke, Lee, and Kamens</label><mixed-citation>
      
Jang, M., Czoschke, N., Lee, S., and Kamens, R.: Heterogeneous atmospheric
chemistry by acid-catalyzed particle-phase reactions, Science, 298, 814–7,
<a href="https://doi.org/10.1126/science.1075798" target="_blank">https://doi.org/10.1126/science.1075798</a>, 2002.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>Jenkin et al.(2003)Jenkin, Saunders, Wagner, and
Pilling</label><mixed-citation>
      
Jenkin, M. E., Saunders, S. M., Wagner, V., and Pilling, M. J.: Protocol for
the development of the Master Chemical Mechanism, MCM v3 (Part B):
tropospheric degradation of aromatic volatile organic compounds, Atmos.
Chem. Phys., 3, 181–193, <a href="https://doi.org/10.5194/acp-3-181-2003" target="_blank">https://doi.org/10.5194/acp-3-181-2003</a>, 2003.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>Jenkin et al.(2018)Jenkin, Valorso, Aumont, Rickard, and
Wallington</label><mixed-citation>
      
Jenkin, M. E., Valorso, R., Aumont, B., Rickard, A. R., and Wallington, T. J.:
Estimation of rate coefficients and branching ratios for gas-phase reactions
of OH with aromatic organic compounds for use in automated mechanism
construction, Atmos. Chem. Phys., 18, 9329–9349,
<a href="https://doi.org/10.5194/acp-18-9329-2018" target="_blank">https://doi.org/10.5194/acp-18-9329-2018</a>, 2018.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>Kanakidou et al.(2005)Kanakidou, Seinfeld, Pandis, Barnes, Dentener,
Facchini, Dingenen, Ervens, Nenes, Nielsen et al.</label><mixed-citation>
      
Kanakidou, M., Seinfeld, J. H., Pandis, S. N., Barnes, I., Dentener, F. J., Facchini, M. C., Van Dingenen, R., Ervens, B., Nenes, A., Nielsen, C. J., Swietlicki, E., Putaud, J. P., Balkanski, Y., Fuzzi, S., Horth, J., Moortgat, G. K., Winterhalter, R., Myhre, C. E. L., Tsigaridis, K., Vignati, E., Stephanou, E. G., and Wilson, J.: Organic aerosol and global climate modelling: a review, Atmos. Chem. Phys., 5, 1053–1123, <a href="https://doi.org/10.5194/acp-5-1053-2005" target="_blank">https://doi.org/10.5194/acp-5-1053-2005</a>, 2005.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>Kim et al.(2019)Kim, Sartelet, and Couvidat</label><mixed-citation>
      
Kim, Y., Sartelet, K., and Couvidat, F.: Modeling the effect of non-ideality,
dynamic mass transfer and viscosity on SOA formation in a 3-D air quality
model, Atmos. Chem. Phys., 19, 1241–1261, <a href="https://doi.org/10.5194/acp-19-1241-2019" target="_blank">https://doi.org/10.5194/acp-19-1241-2019</a>,
2019.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>Knap and Jørgensen(2017)</label><mixed-citation>
      
Knap, H. C. and Jørgensen, S.: Rapid Hydrogen Shift Reactions in Acyl Peroxy
Radicals,  J. Phys. Chem. A, 121, 1470–1479,
<a href="https://doi.org/10.1021/acs.jpca.6b12787" target="_blank">https://doi.org/10.1021/acs.jpca.6b12787</a>, 2017.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>Kroll and Seinfeld(2008)</label><mixed-citation>
      
Kroll, J. H. and Seinfeld, J. H.: Chemistry of Secondary Organic Aerosol:
Formation and Evolution of Low-Volatility Organics in the Atmosphere, Atmos.
Environ., 42, 3593–3624, <a href="https://doi.org/10.1016/j.atmosenv.2008.01.003" target="_blank">https://doi.org/10.1016/j.atmosenv.2008.01.003</a>, 2008.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>Lan et al.(2004)Lan, Zhang, Li, Vermeulen, Weinberg, Dosemeci,
Rappaport, Shen, Alter, Wu, Kopp, Waidyanatha, Rabkin, Guo, Chanock, Hayes,
Linet, Kim, Yin, Rothman, and Smith</label><mixed-citation>
      
Lan, Q., Zhang, L., Li, G., Vermeulen, R., Weinberg, R. S., Dosemeci, M.,
Rappaport, S. M., Shen, M., Alter, B. P., Wu, Y., Kopp, W., Waidyanatha, S.,
Rabkin, C., Guo, W., Chanock, S., Hayes, R. B., Linet, M., Kim, S., Yin, S.,
Rothman, N., and Smith, M. T.: Hematotoxicity in Workers Exposed to Low
Levels of Benzene, Science, 306, 1774–1776, <a href="https://doi.org/10.1126/science.1102443" target="_blank">https://doi.org/10.1126/science.1102443</a>,
2004.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>Lannuque et al.(2023)Lannuque, D'Anna, Kostenidou, Couvidat,
Martinez-Valiente, Eichler, Wisthaler, Müller, Temime-Roussel, Valorso, and
Sartelet</label><mixed-citation>
      
Lannuque, V., D'Anna, B., Kostenidou, E., Couvidat, F., Martinez-Valiente, A.,
Eichler, P., Wisthaler, A., Müller, M., Temime-Roussel, B., Valorso, R.,
and Sartelet, K.: Gas–particle partitioning of toluene oxidation products:
an experimental and modeling study, Atmos. Chem. Phys., 23,
15537–15560, <a href="https://doi.org/10.5194/acp-23-15537-2023" target="_blank">https://doi.org/10.5194/acp-23-15537-2023</a>, 2023.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>Le Bayon(2026)</label><mixed-citation>
      
Le Bayon, A.: Chemical mechanisms and 0D simulation results, Zenodo [data set], <a href="https://doi.org/10.5281/zenodo.22897984" target="_blank">https://doi.org/10.5281/zenodo.22897984</a>, 2026.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>Lin et al.(2012)Lin, Zhang, Docherty, Zhang, Budisulistiorini,
Rubitschun, Shaw, Knipping, Edgerton, Kleindienst, Gold, and
Surratt</label><mixed-citation>
      
Lin, Y.-H., Zhang, Z., Docherty, K. S., Zhang, H., Budisulistiorini, S. H.,
Rubitschun, C. L., Shaw, S. L., Knipping, E. M., Edgerton, E. S.,
Kleindienst, T. E., Gold, A., and Surratt, J. D.: Isoprene Epoxydiols as
Precursors to Secondary Organic Aerosol Formation: Acid-Catalyzed Reactive
Uptake Studies with Authentic Compounds, Environ. Sci.   Technol., 46, 250–258,
<a href="https://doi.org/10.1021/es202554c" target="_blank">https://doi.org/10.1021/es202554c</a>, 2012.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>Luttkus et al.(2024)Luttkus, Hoffmann, Tilgner, Wackermann, Herrmann,
and Wolke</label><mixed-citation>
      
Luttkus, M. L., Hoffmann, E. H., Tilgner, A., Wackermann, J., Herrmann, H., and
Wolke, R.: URMELL – Part II: semi-explicit isoprene and aromatics gasSOA
modelling, Environ. Sci.-Atmos., 4, 1413–1433, <a href="https://doi.org/10.1039/d4ea00075g" target="_blank">https://doi.org/10.1039/d4ea00075g</a>,
2024.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>Majdi et al.(2019)Majdi, Sartelet, Lanzafame, Couvidat, Kim, Chrit,
and Turquety</label><mixed-citation>
      
Majdi, M., Sartelet, K., Lanzafame, G. M., Couvidat, F., Kim, Y., Chrit, M.,
and Turquety, S.: Precursors and formation of secondary organic aerosols
from wildfires in the Euro-Mediterranean region, Atmos. Chem. Phys., 19,
5543–5569, <a href="https://doi.org/10.5194/acp-19-5543-2019" target="_blank">https://doi.org/10.5194/acp-19-5543-2019</a>, 2019.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>Mauderly and Chow(2008)</label><mixed-citation>
      
Mauderly, J. L. and Chow, J. C.: Health Effects of Organic Aerosols, Inhal.
Toxicol., 20, 257–288, <a href="https://doi.org/10.1080/08958370701866008" target="_blank">https://doi.org/10.1080/08958370701866008</a>, 2008.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>Mohr et al.(2013)Mohr, Lopez-Hilfiker, Zotter, Prévôt, Xu, Ng,
Herndon, Williams, Franklin, Zahniser, Worsnop, Knighton, Aiken, Gorkowski,
Dubey, Allan, and Thornton</label><mixed-citation>
      
Mohr, C., Lopez-Hilfiker, F. D., Zotter, P., Prévôt, A. S. H., Xu, L., Ng,
N. L., Herndon, S. C., Williams, L. R., Franklin, J. P., Zahniser, M. S.,
Worsnop, D. R., Knighton, W. B., Aiken, A. C., Gorkowski, K. J., Dubey,
M. K., Allan, J. D., and Thornton, J. A.: Contribution of Nitrated Phenols
to Wood Burning Brown Carbon Light Absorption in Detling, United Kingdom
during Winter Time, Environ. Sci. Technol., 47, 6316–6324,
<a href="https://doi.org/10.1021/es400683v" target="_blank">https://doi.org/10.1021/es400683v</a>, 2013.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>Møller et al.(2016)Møller, Otkjær, Hyttinen, Kurtén, and
Kjaergaard</label><mixed-citation>
      
Møller, K. H., Otkjær, R. V., Hyttinen, N., Kurtén, T., and Kjaergaard,
H. G.: Cost-Effective Implementation of Multiconformer Transition State
Theory for Peroxy Radical Hydrogen Shift Reactions, J. Phys. Chem. A, 120,
10072–10087, <a href="https://doi.org/10.1021/acs.jpca.6b09370" target="_blank">https://doi.org/10.1021/acs.jpca.6b09370</a>,  2016.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>Møller et al.(2019)Møller, Bates, and Kjaergaard</label><mixed-citation>
      
Møller, K. H., Bates, K. H., and Kjaergaard, H. G.: The Importance of Peroxy
Radical Hydrogen-Shift Reactions in Atmospheric Isoprene Oxidation, J. Phys.
Chem. A, 123, 920–932, <a href="https://doi.org/10.1021/acs.jpca.8b10432" target="_blank">https://doi.org/10.1021/acs.jpca.8b10432</a>, 2019.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>Nakao et al.(2011)Nakao, Clark, Tang, Sato, and
Cocker III</label><mixed-citation>
      
Nakao, S., Clark, C., Tang, P., Sato, K., and Cocker III, D.: Secondary Organic
Aerosol Formation from Phenolic Compounds in the Absence of NO<sub><i>x</i></sub>,
Atmos. Chem. Phys., 11, 10649–10660, <a href="https://doi.org/10.5194/acp-11-10649-2011" target="_blank">https://doi.org/10.5194/acp-11-10649-2011</a>,
2011.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>Odum et al.(1996)Odum, Hoffmann, Bowman, Collins, Flagan, and
Seinfeld</label><mixed-citation>
      
Odum, J. R., Hoffmann, T., Bowman, F., Collins, D., Flagan, R. C., and
Seinfeld, J. H.: Gas/Particle Partitioning and Secondary Organic Aerosol
Yields, Environ. Sci. Technol., 30, 2580–2585, <a href="https://doi.org/10.1021/es950943+" target="_blank">https://doi.org/10.1021/es950943+</a>, 1996.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>Ojala et al.(2025)Ojala, Iyer, Le Bayon, Kumar, Vinkvist, Savolainen,
Kervinen, Sartelet, and Rissanen</label><mixed-citation>
      
Ojala, A., Iyer, S., Le Bayon, A., Kumar, A., Vinkvist, N., Savolainen, A.,
Kervinen, A., Sartelet, K., and Rissanen, M.: Secondary organic aerosol
formation from sequential oxidation of toluene and cresols,
<a href="https://doi.org/10.21203/rs.3.rs-7621262/v1" target="_blank">https://doi.org/10.21203/rs.3.rs-7621262/v1</a>,  2025.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>Orlando and Tyndall(2012)</label><mixed-citation>
      
Orlando, J. J. and Tyndall, G. S.: Laboratory studies of organic peroxy
radical chemistry: an overview with emphasis on recent issues of atmospheric
significance, Chem. Soc. Rev., 41, 6294–6317, <a href="https://doi.org/10.1039/C2CS35166H" target="_blank">https://doi.org/10.1039/C2CS35166H</a>,
2012.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>Pankow(1994)</label><mixed-citation>
      
Pankow, J. F.: An absorption model of gas/particle partitioning of organic
compounds in the atmosphere, Atmos. Environ., 28, 185–188,
<a href="https://doi.org/10.1016/1352-2310(94)90093-0" target="_blank">https://doi.org/10.1016/1352-2310(94)90093-0</a>, 1994.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>Paulot et al.(2009)Paulot, Crounse, Kjaergaard, Kürten, Clair,
Seinfeld, and Wennberg</label><mixed-citation>
      
Paulot, F., Crounse, J. D., Kjaergaard, H. G., Kürten, A., Clair, J. M. S.,
Seinfeld, J. H., and Wennberg, P. O.: Unexpected Epoxide Formation in the
Gas-Phase Photooxidation of Isoprene, Science, 325, 730–733,
<a href="https://doi.org/10.1126/science.1172910" target="_blank">https://doi.org/10.1126/science.1172910</a>, 2009.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>Peeters and Nguyen(2012)</label><mixed-citation>
      
Peeters, J. and Nguyen, T. L.: Unusually Fast 1,6-H Shifts of Enolic Hydrogens
in Peroxy Radicals: Formation of the First-Generation C<sub>2</sub> and C<sub>3</sub> Carbonyls in
the Oxidation of Isoprene, J. Phys. Chem. A, 116, 6134–6141,
<a href="https://doi.org/10.1021/jp211447q" target="_blank">https://doi.org/10.1021/jp211447q</a>, 2012.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>Pichelstorfer et al.(2024)Pichelstorfer, Roldin, Rissanen, Hyttinen,
Garmash, Xavier, Zhou, Clusius, Foreback, Almeida, Deng, Baykara, Kurten, and
Boy</label><mixed-citation>
      
Pichelstorfer, L., Roldin, P., Rissanen, M., Hyttinen, N., Garmash, O., Xavier,
C., Zhou, P., Clusius, P., Foreback, B., Almeida, T. G., Deng, C., Baykara,
M., Kurten, T., and Boy, M.: Towards Automated Inclusion of Autoxidation
Chemistry in Models: From Precursors to Atmospheric Implications, Environ.
Sci. Atmos., 4, 879–896, <a href="https://doi.org/10.1039/D4EA00054D" target="_blank">https://doi.org/10.1039/D4EA00054D</a>, 2024.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>Piletic et al.(2013)Piletic, Edney, and Bartolotti</label><mixed-citation>
      
Piletic, I., Edney, E., and Bartolotti, L. L.: A computational study of acid
catalyzed aerosol reactions of atmospherically relevant epoxides, Phys.
Chem. Chem. Phys., 15, <a href="https://doi.org/10.1039/c3cp52851k" target="_blank">https://doi.org/10.1039/c3cp52851k</a>, 2013.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>Pope et al.(2002)Pope, Burnett, Thun, Calle, Krewski, Ito, and
Thurston</label><mixed-citation>
      
Pope, C. A., Burnett, R. T., Thun, M. J., Calle, E. E., Krewski, D., Ito, K.,
and Thurston, G. D.: Lung Cancer, Cardiopulmonary Mortality, and Long-term
Exposure to Fine Particulate Air Pollution, J. Am. Med. Assoc., 287,
1132–1141, <a href="https://doi.org/10.1001/jama.287.9.1132" target="_blank">https://doi.org/10.1001/jama.287.9.1132</a>, 2002.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>Priestley et al.(2021)Priestley, Bannan, Le Breton, Worrall, Kang,
Pullinen, Schmitt, Tillmann, Kleist, Zhao, Wildt, Garmash, Mehra, Bacak,
Shallcross, Kiendler-Scharr, Hallquist, Ehn, Coe, Percival, Hallquist,
Mentel, and McFiggans</label><mixed-citation>
      
Priestley, M., Bannan, T. J., Le Breton, M., Worrall, S. D., Kang, S.,
Pullinen, I., Schmitt, S., Tillmann, R., Kleist, E., Zhao, D., Wildt, J.,
Garmash, O., Mehra, A., Bacak, A., Shallcross, D. E., Kiendler-Scharr, A.,
Hallquist, Å. M., Ehn, M., Coe, H., Percival, C. J., Hallquist, M.,
Mentel, T. F., and McFiggans, G.: Chemical characterisation of benzene
oxidation products under high- and low-NO<sub><i>x</i></sub> conditions using chemical
ionisation mass spectrometry, Atmos. Chem. Phys., 21, 3473–3490,
<a href="https://doi.org/10.5194/acp-21-3473-2021" target="_blank">https://doi.org/10.5194/acp-21-3473-2021</a>, 2021.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>Pun et al.(2006)Pun, Seigneur, and Lohman</label><mixed-citation>
      
Pun, B. K., Seigneur, C., and Lohman, K.: Modeling Secondary Organic Aerosol
Formation via Multiphase Partitioning with Molecular Data, Environ. Sci. Technol., 40, 4722–4731, <a href="https://doi.org/10.1021/es0522736" target="_blank">https://doi.org/10.1021/es0522736</a>, 2006.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>Reimann and Lewis(2007)</label><mixed-citation>
      
Reimann, S. and Lewis, A. C.: Anthropogenic VOCs, Chap. 2,  33–81, John
Wiley &amp; Sons, Ltd, ISBN 9780470988657,
<a href="https://doi.org/10.1002/9780470988657.ch2" target="_blank">https://doi.org/10.1002/9780470988657.ch2</a>, 2007.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>Sarica et al.(2023)Sarica, Sartelet, Roustan, Kim, Lugon, Marques,
D'Anna, Chaillou, and Larrie</label><mixed-citation>
      
Sarica, T., Sartelet, K., Roustan, Y., Kim, Y., Lugon, L., Marques, B., D'Anna,
B., Chaillou, C., and Larrie, C.: Sensitivity of pollutant concentrations in
urban streets to asphalt and traffic-related emissions, Environ. Poll., 332,
121955, <a href="https://doi.org/10.1016/j.envpol.2023.121955" target="_blank">https://doi.org/10.1016/j.envpol.2023.121955</a>, 2023.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>Sartelet et al.(2024a)Sartelet, Wang, Lannuque, Iyer, Couvidat, and
Sarica</label><mixed-citation>
      
Sartelet, K., Wang, Z., Lannuque, V., Iyer, S., Couvidat, F., and Sarica, T.:
Modelling molecular composition of SOA from toluene photo-oxidation at urban
and street scales, Environ. Sci. Atmos., 4, 839–847,
<a href="https://doi.org/10.1039/D4EA00049H" target="_blank">https://doi.org/10.1039/D4EA00049H</a>, 2024a.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>Sartelet et al.(2024b)</label><mixed-citation>
      
Sartelet, K., Couvidat, F., Wang, Z., Lannuque, V., and Kim, Y.: SSH-aerosol: a modular box model to simulate the evolution of primary and secondary aerosols (Version 2.0), Zenodo [code], <a href="https://doi.org/10.5281/zenodo.14196277" target="_blank">https://doi.org/10.5281/zenodo.14196277</a>, 2024b.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>Sartelet et al.(2026)Sartelet, Wang, Kim, Lannuque, and
Couvidat</label><mixed-citation>
      
Sartelet, K., Wang, Z., Kim, Y., Lannuque, V., and Couvidat, F.: Advanced
modeling of gas chemistry and aerosol dynamics with SSH-aerosol v2.0,
Geosci. Model Dev., 19, 389–421, <a href="https://doi.org/10.5194/gmd-19-389-2026" target="_blank">https://doi.org/10.5194/gmd-19-389-2026</a>, 2026.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>Schwantes et al.(2017)Schwantes, Schilling, Mcvay, Lignell, Coggon,
Zhang, Wennberg, and Seinfeld</label><mixed-citation>
      
Schwantes, R., Schilling, K., Mcvay, R., Lignell, H., Coggon, M., Zhang, X.,
Wennberg, P., and Seinfeld, J.: Formation of highly oxygenated
low-volatility products from cresol oxidation, Atmos. Chem. Phys., 17,
3453–3474, <a href="https://doi.org/10.5194/acp-17-3453-2017" target="_blank">https://doi.org/10.5194/acp-17-3453-2017</a>, 2017.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>Sun et al.(2008)Sun, Trabue, Scoggin, Jackson, Pan, Zhao, Malkina,
Koziel, and Mitloehner</label><mixed-citation>
      
Sun, H., Trabue, S. L., Scoggin, K., Jackson, W. A., Pan, Y., Zhao, Y.,
Malkina, I. L., Koziel, J. A., and Mitloehner, F. M.: Alcohol, Volatile
Fatty Acid, Phenol, and Methane Emissions from Dairy Cows and Fresh Manure,
J. Environ. Qual., 37, 615–622, <a href="https://doi.org/10.2134/jeq2007.0357" target="_blank">https://doi.org/10.2134/jeq2007.0357</a>, 2008.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>Wang et al.(2013)Wang, Wu, and Xu</label><mixed-citation>
      
Wang, L., Wu, R., and Xu, C.: Atmospheric Oxidation Mechanism of Benzene.
Fates of Alkoxy Radical Intermediates and Revised Mechanism, J. Phys. Chem.
A, 117, 14163–14168, <a href="https://doi.org/10.1021/jp4101762" target="_blank">https://doi.org/10.1021/jp4101762</a>, 2013.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>Wang et al.(2020)Wang, Newland, Deng, Rickard, Hamilton, Muñoz,
Ródenas, Vázquez, Wang, and Wang</label><mixed-citation>
      
Wang, S., Newland, M. J., Deng, W., Rickard, A. R., Hamilton, J. F., Muñoz,
A., Ródenas, M., Vázquez, M. M., Wang, L., and Wang, X.: Aromatic
Photo-oxidation, A New Source of Atmospheric Acidity, Environ. Sci. Technol.,
54, 7798–7806, <a href="https://doi.org/10.1021/acs.est.0c00526" target="_blank">https://doi.org/10.1021/acs.est.0c00526</a>, 2020.


    </mixed-citation></ref-html>
<ref-html id="bib1.bib62"><label>Wang et al.(2023a)Wang, Zhao, Chan, Yao, Chen, and
Abbatt</label><mixed-citation>
      
Wang, S., Zhao, Y., Chan, A. W. H., Yao, M., Chen, Z., and Abbatt, J. P. D.:
Organic Peroxides in Aerosol: Key Reactive Intermediates for Multiphase
Processes in the Atmosphere, Chem. Rev., 123, 1635–1679,
<a href="https://doi.org/10.1021/acs.chemrev.2c00430" target="_blank">https://doi.org/10.1021/acs.chemrev.2c00430</a>, 2023a.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib63"><label>Wang et al.(2022)Wang, Couvidat, and Sartelet</label><mixed-citation>
      
Wang, Z., Couvidat, F., and Sartelet, K.: GENerator of reduced Organic Aerosol
mechanism (GENOA v1.0): an automatic generation tool of semi-explicit
mechanisms, Geosci. Model Dev., 15, 8957–8982,
<a href="https://doi.org/10.5194/gmd-15-8957-2022" target="_blank">https://doi.org/10.5194/gmd-15-8957-2022</a>, 2022.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib64"><label>Wang et al.(2023b)Wang, Couvidat, and
Sartelet</label><mixed-citation>
      
Wang, Z., Couvidat, F., and Sartelet, K.: Implementation of a parallel
reduction algorithm in the GENerator of reduced Organic Aerosol mechanisms
(GENOA v2.0): Application to multiple monoterpene aerosol precursors, J.
Aerosol Sci., 174, 106248, <a href="https://doi.org/10.1016/j.jaerosci.2023.106248" target="_blank">https://doi.org/10.1016/j.jaerosci.2023.106248</a>,
2023b.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib65"><label>Wang et al.(2024)Wang, Couvidat, and Sartelet</label><mixed-citation>
      
Wang, Z., Couvidat, F., and Sartelet, K.: Response of biogenic secondary
organic aerosol formation to anthropogenic NO<sub><i>x</i></sub> emission mitigation, Sci. Total Environ., 927, 172142,
<a href="https://doi.org/10.1016/j.scitotenv.2024.172142" target="_blank">https://doi.org/10.1016/j.scitotenv.2024.172142</a>, 2024.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib66"><label>Weisel(2010)</label><mixed-citation>
      
Weisel, C. P.: Benzene Exposure: An Overview of Monitoring Methods and Their
Findings, Chem.-Biol. Interact., 184, 58–66,
<a href="https://doi.org/10.1016/j.cbi.2009.12.030" target="_blank">https://doi.org/10.1016/j.cbi.2009.12.030</a>, 2010.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib67"><label>Wieser et al.(2024)Wieser, Sander, Cho, Fuchs, Hohaus, Novelli,
Tillmann, and Taraborrelli</label><mixed-citation>
      
Wieser, F., Sander, R., Cho, C., Fuchs, H., Hohaus, T., Novelli, A., Tillmann,
R., and Taraborrelli, D.: Development of a Multiphase Chemical Mechanism to
Improve Secondary Organic Aerosol Formation in CAABA/MECCA (Version
4.7.0), Geosci. Model Dev., 17, 4311–4330, <a href="https://doi.org/10.5194/gmd-17-4311-2024" target="_blank">https://doi.org/10.5194/gmd-17-4311-2024</a>,
2024.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib68"><label>Xu et al.(2020)Xu, Møller, Crounse, Kjaergaard, and
Wennberg</label><mixed-citation>
      
Xu, L., Møller, K. H., Crounse, J. D., Kjaergaard, H. G., and Wennberg, P. O.:
New Insights into the Radical Chemistry and Product Distribution in the
OH-Initiated Oxidation of Benzene, Environ. Sci. Technol., 54, 13467–13477,
<a href="https://doi.org/10.1021/acs.est.0c04780" target="_blank">https://doi.org/10.1021/acs.est.0c04780</a>, 2020.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib69"><label>Zaytsev et al.(2019)Zaytsev, Koss, Breitenlechner, Krechmer, Nihill,
Lim, Rowe, Cox, Moss, Roscioli, Canagaratna, Worsnop, Kroll, and
Keutsch</label><mixed-citation>
      
Zaytsev, A., Koss, A. R., Breitenlechner, M., Krechmer, J. E., Nihill, K. J.,
Lim, C. Y., Rowe, J. C., Cox, J. L., Moss, J., Roscioli, J. R., Canagaratna,
M. R., Worsnop, D. R., Kroll, J. H., and Keutsch, F. N.: Mechanistic study
of the formation of ring-retaining and ring-opening products from the
oxidation of aromatic compounds under urban atmospheric conditions, Atmos.
Chem. Phys., 19, 15117–15129, <a href="https://doi.org/10.5194/acp-19-15117-2019" target="_blank">https://doi.org/10.5194/acp-19-15117-2019</a>, 2019.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib70"><label>Zhang et al.(2026)Zhang, Cheung, Decker, Surdu, Bogler, Li, Wang,
Modini, Slowik, Pagonis, Guo, Campuzano-Jost, Jimenez, Coggon, Gkatzelis,
Warneke, Hall, Ullmann, Diskin, Digangi, Peischl, Holmes, Zhou, Zhang, Bell,
El Haddad, and Prevot</label><mixed-citation>
      
Zhang, J., Cheung, R. K. Y., Decker, Z. C. J., Surdu, M., Bogler, S., Li, K.,
Wang, T., Modini, R. L., Slowik, J. G., Pagonis, D., Guo, H., Campuzano-Jost,
P., Jimenez, J. L., Coggon, M. M., Gkatzelis, G. I., Warneke, C., Hall,
S. R., Ullmann, K., Diskin, G. S., Digangi, J. P., Peischl, J., Holmes,
C. D., Zhou, S., Zhang, Q., Bell, D. M., El Haddad, I., and Prevot, A. S. H.:
Photoinduced Intraparticle Chemistry Drives the Rapid Atmospheric Oxidation
of Biomass Burning Organic Aerosol, Environ. Sci. Technol., 60, 24206–24216,
<a href="https://doi.org/10.1021/acs.est.6c02532" target="_blank">https://doi.org/10.1021/acs.est.6c02532</a>, 2026.

    </mixed-citation></ref-html>--></article>
