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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-26-13743-2026</article-id><title-group><article-title>Inferring European fossil fuel CO<sub>2</sub> emissions  using TROPOMI NO<sub>2</sub> data and sector-based  NO<sub><italic>x</italic></sub> : CO<sub>2</sub> emission ratios</article-title><alt-title>Inferring ffCO<sub>2</sub> using TROPOMI NO<sub>2</sub></alt-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Schooling</surname><given-names>Chlöe N.</given-names></name>
          <email>cschooli@ed.ac.uk</email>
        <ext-link>https://orcid.org/0000-0001-7892-9715</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Feng</surname><given-names>Liang</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Super</surname><given-names>Ingrid</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8252-5983</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff3">
          <name><surname>Palmer</surname><given-names>Paul I.</given-names></name>
          <email>pip@ed.ac.uk</email>
        <ext-link>https://orcid.org/0000-0002-1487-0969</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>School of GeoSciences, University of Edinburgh, Edinburgh, United Kingdom</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Air Quality and Emissions Research, TNO, P.O. Box 80015, 3508 TA Utrecht, the Netherlands</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>National Centre for Earth Observation, University of Edinburgh, Edinburgh, United Kingdom</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Chlöe N. Schooling (cschooli@ed.ac.uk) and Paul I. Palmer (pip@ed.ac.uk)</corresp></author-notes><pub-date><day>1</day><month>October</month><year>2026</year></pub-date>
      
      <volume>26</volume>
      <issue>19</issue>
      <fpage>13743</fpage><lpage>13766</lpage>
      <history>
        <date date-type="received"><day>27</day><month>March</month><year>2026</year></date>
           <date date-type="rev-request"><day>8</day><month>April</month><year>2026</year></date>
           <date date-type="rev-recd"><day>14</day><month>July</month><year>2026</year></date>
           <date date-type="accepted"><day>10</day><month>September</month><year>2026</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2026 Chlöe N. Schooling et al.</copyright-statement>
        <copyright-year>2026</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026.html">This article is available from https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d2e182">Accurate monitoring of fossil fuel CO<sub>2</sub> (ffCO<sub>2</sub>) emissions is essential for tracking climate mitigation, yet natural carbon-cycle fluxes often obscure human-induced signals in atmospheric observations. This study presents a proof-of-concept satellite-driven data assimilation framework that uses nitrogen oxides (NO<sub><italic>x</italic></sub> <inline-formula><mml:math id="M10" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> NO <inline-formula><mml:math id="M11" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> NO<sub>2</sub>) – short-lived trace gases co-emitted with CO<sub>2</sub> –, to estimate ffCO<sub>2</sub> emissions. We estimate European NO<sub><italic>x</italic></sub> emissions for 2021 by assimilating TROPOMI NO<sub>2</sub> observations into an Ensemble Kalman Filter (EnKF) framework, optimised within the GEOS-Chem atmospheric transport model. We use a computationally efficient offline treatment of NO<sub><italic>x</italic></sub> chemistry, enabling large-ensemble inversions while retaining sensitivity to changes in photochemistry. Assimilating these data leads to a systematic reduction in the state vector uncertainty, with the mean uncertainty in total ffCO<sub>2</sub> emissions over Europe decreasing from 5.6 % in the prior to 3.3 % in the posterior. As well as overall improvement in model agreement with observations that corresponds to an annual correlation increase, <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.12</mml:mn></mml:mrow></mml:math></inline-formula>, derived from the correlation of all daily model–observation pairs across all grid cells in the European domain. By leveraging sector-specific NO<sub><italic>x</italic></sub> : CO<sub>2</sub> emission ratios, we translate our posterior NO<sub><italic>x</italic></sub> flux estimates into corresponding ffCO<sub>2</sub> estimates that capture enhanced seasonal variability. Our inferred ffCO<sub>2</sub> emissions exhibit elevated values in autumn and winter, spatially concentrated over major source regions and consistent with surface temperature variability. The inferred posterior adjustments include substantial increases in national emissions in several regions (20 %–91 % in national annual combustion CO<sub>2</sub>), highlighting both the sensitivity of the method and the need for further validation and multi-species observational constraints. Independent evaluation against in situ measurements confirms significant improvements in mean error statistics in some regions. And updated national posterior ffCO<sub>2</sub> emissions show improved agreement with EDGAR across five high emitting European countries. This study demonstrates the potential of ensemble data assimilation and reduced-complexity chemistry to provide a first-order constraint on European ffCO<sub>2</sub> estimates, establishing a vital foundation for future joint NO<sub>2</sub>–CO<sub>2</sub> inversion systems.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>HORIZON EUROPE Climate, Energy and Mobility</funding-source>
<award-id>101082194</award-id>
</award-group>
<award-group id="gs2">
<funding-source>National Centre for Earth Observation</funding-source>
<award-id>NE/R016518/1</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d2e405">Fossil fuel CO<sub>2</sub> (ffCO<sub>2</sub>) emissions are the primary driver of anthropogenic climate change. Accurately monitoring these emissions is essential for tracking progress toward national mitigation goals. While national inventories and bottom-up emission datasets provide the primary basis for these assessments, atmospheric observation-based approaches offer a complementary, independent constraint. However, these top-down methods are complicated by the difficulty of isolating fossil fuel signals from large, seasonally varying biogenic fluxes. Top-down atmospheric inversions offer a way to improve emission estimates of ffCO<sub>2</sub>, but in practice they remain limited by observational constraints and the inability to directly differentiate anthropogenic CO<sub>2</sub> from natural sources.</p>
      <p id="d2e444">Studies are increasingly using atmospheric observations of trace gases co-emitted during combustion processes to infer ffCO<sub>2</sub> emissions <xref ref-type="bibr" rid="bib1.bibx36 bib1.bibx52 bib1.bibx39 bib1.bibx35 bib1.bibx62 bib1.bibx54 bib1.bibx37" id="paren.1"/>. Nitrogen oxides (NO<sub><italic>x</italic></sub>) are a leading candidate tracer to help infer ffCO<sub>2</sub> because they originate mostly from combustion and have a short atmospheric lifetime so that fresh emissions can be readily identified. High-resolution satellite observations of NO<sub>2</sub>, such as those from TROPOMI, provide detailed patterns of emission activity. These measurements have been extensively used to infer NO<sub><italic>x</italic></sub> emissions, either through mass balance methods <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx60 bib1.bibx51" id="paren.2"/>, comprehensive atmospheric inversions that account for transport and chemistry <xref ref-type="bibr" rid="bib1.bibx50 bib1.bibx19 bib1.bibx24 bib1.bibx42 bib1.bibx30" id="paren.3"/>, or hybrid approaches that combine elements of both <xref ref-type="bibr" rid="bib1.bibx43 bib1.bibx44" id="paren.4"/>. By applying sector-dependent emission ratios, it is then possible to infer spatial patterns of ffCO<sub>2</sub> from these NO<sub><italic>x</italic></sub> emission estimates <xref ref-type="bibr" rid="bib1.bibx2 bib1.bibx35 bib1.bibx16 bib1.bibx17 bib1.bibx27" id="paren.5"/>. Preliminary studies have assessed the ability of using synthetic atmospheric observations of both NO<sub>2</sub> and CO<sub>2</sub> in tandem to assess methodologies for more robust estimates of ffCO<sub>2</sub> flux <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx29 bib1.bibx46" id="paren.6"/>.</p>
      <p id="d2e557">However, such a tracer-based approach is subject to substantial uncertainties. A key limitation is the uncertainty associated with the CO<sub>2</sub> and NO<sub><italic>x</italic></sub> emission ratios, which vary by sector, fuel type, combustion technology, and emission control strategies <xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx61 bib1.bibx53" id="paren.7"/>. Additional challenges include errors in atmospheric transport modelling, uncertainties in the representation of chemical processes controlling NO<sub><italic>x</italic></sub> lifetimes, sparse and inhomogeneous observational coverage, and the difficulty of accurately estimating background concentrations <xref ref-type="bibr" rid="bib1.bibx41 bib1.bibx1" id="paren.8"/>. These factors complicate the interpretation of NO<sub>2</sub> columns and the propagation of information from observed concentrations back to surface emissions and, ultimately, to ffCO<sub>2</sub> fluxes. Data assimilation frameworks such as the Ensemble Kalman Filter (EnKF) provide a powerful means of addressing some of these challenges by explicitly representing and propagating uncertainties in emissions, chemistry, transport, and observations. These limitations mean that tracer-based approaches currently provide only indirect and approximate constraints on ffCO<sub>2</sub> emissions. In particular, assumptions regarding fixed NO<sub><italic>x</italic></sub> : CO<sub>2</sub> emission ratios represent a key limitation for tracer-based approaches and can introduce systematic biases in inferred ffCO<sub>2</sub> emissions.</p>
      <p id="d2e648">We present a methodology that uses TROPOMI NO<sub>2</sub> observations within an Ensemble Kalman Filter (EnKF) framework to infer daily NO<sub><italic>x</italic></sub> emission estimates over Europe during 2021. Our approach uses the GEOS-Chem model with a novel, lightweight offline NO<sub><italic>x</italic></sub> chemistry module, extending the work of <xref ref-type="bibr" rid="bib1.bibx47" id="text.9"/>. By embedding this reduced-complexity chemistry within an ensemble data assimilation system, we demonstrate a computationally efficient pathway for satellite-derived ffCO<sub>2</sub> estimation. In this framework, NO<sub>2</sub> observations are assimilated to constrain NO<sub><italic>x</italic></sub> emissions, and ffCO<sub>2</sub> emissions are subsequently inferred diagnostically using prescribed NO<sub><italic>x</italic></sub> : CO<sub>2</sub> emission ratios. Cross-species error correlations are represented in the prior covariance structure to represent shared uncertainties between NO<sub><italic>x</italic></sub>  and CO<sub>2</sub> emissions, but CO<sub>2</sub> fluxes are not directly optimised and are inferred post hoc from the optimised NO<sub><italic>x</italic></sub> emissions. This framework establishes a scalable foundation for future joint inversions of NO<sub>2</sub> and CO<sub>2</sub>.</p>
      <p id="d2e792">In the next section, we describe the data and methods, including TROPOMI NO<sub>2</sub> data, the GEOS-Chem atmospheric chemistry transport and its configuration used for the experiments we report here that includes our offline NO<sub><italic>x</italic></sub> chemistry module, and the ensemble Kalman filter. We also include details about the sector-based NO<sub><italic>x</italic></sub> : CO<sub>2</sub> emission ratios used to translate our posterior NO<sub><italic>x</italic></sub> emission estimates into ffCO<sub>2</sub> emission estimates. In Sect. 3, we describe our results. We conclude our study in Sect. 4.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Data and methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Atmospheric NO<sub>2</sub> observations</title>
      <p id="d2e875">We use satellite observations of NO<sub>2</sub> from the TROPOspheric Monitoring Instrument (TROPOMI) to constrain anthropogenic NO<sub><italic>x</italic></sub> and CO<sub>2</sub> emissions over Europe. TROPOMI is a push-broom imaging spectrometer aboard Copernicus Sentinel-5 Precursor (S5P), launched in October 2017. S5P operates in a sun-synchronous Low-Earth Orbit at an altitude of approximately 824 km, with an ascending node local equator-crossing time of 13:30 LT. TROPOMI has an across track swath of 2600 km, resulting in a daily global coverage. The nadir spatial resolution for NO<sub>2</sub> was initially <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:mn mathvariant="normal">7</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn></mml:mrow></mml:math></inline-formula> km<sup>2</sup> and was further refined to <inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:mn mathvariant="normal">5.5</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn></mml:mrow></mml:math></inline-formula> km<sup>2</sup> in August 2019. The NO<sub>2</sub> retrievals use the UV/Vis spectral range (405–465 nm), with typical uncertainties of order 10 %–40 % depending on viewing and atmospheric conditions <xref ref-type="bibr" rid="bib1.bibx58 bib1.bibx57" id="paren.10"/>. For our study, we use v2.4.0 of the Sentinel-5P TROPOMI Level-2 NO<sub>2</sub> data for the full year of 2021. We consider measurements that have a quality assurance value qa <inline-formula><mml:math id="M85" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.75 to remove low-quality pixels <xref ref-type="bibr" rid="bib1.bibx57" id="paren.11"/>.</p>
      <p id="d2e989">To evaluate the NO<sub><italic>x</italic></sub> posterior emission estimates inferred from TROPOMI NO<sub>2</sub> column data, and the corresponding ffCO<sub>2</sub> estimates, we use independent atmospheric NO<sub>2</sub> and CO<sub>2</sub> measurements. We use satellite observations of column-averaged CO<sub>2</sub> retrieved from the NASA Orbiting Carbon Observatory (OCO-2) to evaluate the influence of our posterior ffCO<sub>2</sub> emission estimates on the total column. We acknowledge fresh ffCO<sub>2</sub> emissions represent at most a few percent of the column quantity so that distinguishing the anthropogenic signal from the natural carbon cycle and background concentrations becomes a significant observational challenge. Despite this, the high precision of OCO-2 measurements (0.5 ppm; <xref ref-type="bibr" rid="bib1.bibx25" id="altparen.12"/>) allows us to detect subtle enhancements in the total column over major industrial regions and urban centres <xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx63" id="paren.13"/>. We use the Level 2 Lite Full Physics product retrieved using the Atmospheric CO<sub>2</sub> Observations from Space (ACOS) algorithm, version 10. These data provide bias-corrected, quality-screened <inline-formula><mml:math id="M95" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>CO<sub>2</sub> retrievals with a footprint of approximately <inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.3</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">2.25</mml:mn></mml:mrow></mml:math></inline-formula> km<sup>2</sup>, acquired in nadir with a local overpass time of 13:30 LT. Due to OCO-2's narrow <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> km swath and strict cloud filtering, spatial coverage is sparse.</p>
      <p id="d2e1128">For consistency with our NO<sub>2</sub> filtering criterion, we select only high-quality retrievals with a quality assurance value qa <inline-formula><mml:math id="M101" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.75. Both satellite datasets were resampled to the GEOS-Chem nested model resolution of 0.25° (latitude) <inline-formula><mml:math id="M102" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.3125° (longitude); the model is described below. Figure <xref ref-type="fig" rid="F1"/>a shows the proportion of European grid points covered per day and per month for TROPOMI and OCO-2. Generally coverage is highest during summer months. To ensure accurate comparison with observations, we interpolate the satellite averaging kernels onto the 47 vertical levels of the model to compute vertically sensitive model column densities.</p>

      <fig id="F1" specific-use="star"><label>Figure 1</label><caption><p id="d2e1159"><bold>(a)</bold> The fractional daily and monthly European coverage of TROPOMI NO<sub>2</sub> (top panel) and OCO-2 (bottom panel). Coverage is defined as the fraction of GEOS-Chem model grid cells across the European domain that receive at least one clear-sky TROPOMI or OCO-2 observation within the specified time period. Thus, 100 % daily coverage means every model grid was observed at least once during the period (day or month). <bold>(b)</bold> Maps of the in situ observation sites used for evaluation. The top panel shows the locations of the 202 EEA NO<sub>2</sub> monitoring stations. The bottom panel shows the 47 in situ CO<sub>2</sub> measurement sites, including 5 DECC sites (green triangles) and 42 ICOS sites (crosses), with ICOS stations further classified by type (rural <inline-formula><mml:math id="M106" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> black, suburban <inline-formula><mml:math id="M107" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> yellow, urban <inline-formula><mml:math id="M108" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> red).</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f01.png"/>

        </fig>

      <p id="d2e1222">We also used in situ measurements of NO<sub>2</sub> and CO<sub>2</sub> collected across Europe (Fig. <xref ref-type="fig" rid="F1"/>b). We use NO<sub>2</sub> data from the European Environment Agency (EEA) air quality network <xref ref-type="bibr" rid="bib1.bibx11" id="paren.14"/>, including 202 sites across Europe that had at least 100 d of coverage in 2021. EEA data are processed using standardised quality filtering procedures, and data are reported with a mean uncertainty of <inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M113" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<sup>−3</sup> across rural and urban background areas <xref ref-type="bibr" rid="bib1.bibx22" id="paren.15"/>. We also used in situ measurements of CO<sub>2</sub> from multiple ground-based monitoring networks across Europe, including the Integrated Carbon Observation System (ICOS) <xref ref-type="bibr" rid="bib1.bibx23" id="paren.16"/>, and the UK's Department for Energy Security and Net Zero (formerly DECC) sites <xref ref-type="bibr" rid="bib1.bibx49" id="paren.17"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>The GEOS-Chem atmospheric chemistry transport model</title>
      <p id="d2e1315">We use the nested version of the GEOS-Chem atmospheric chemistry transport model (version 14.4.3) <xref ref-type="bibr" rid="bib1.bibx3" id="paren.18"/>. The model is driven by offline meteorological fields from the GEOS-FP dataset provided by NASA's Global Modeling and Assimilation Office (GMAO), using the native horizontal resolution of <inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.3125</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula>, 47 vertical levels (grouped from the native 72 levels), and 3-hourly temporal resolution. The forward model simulations used within the inversion framework use an adapted tagged CO<sub>2</sub> model configuration that includes a lightweight offline treatment of NO<sub><italic>x</italic></sub> chemistry, described below.</p>
      <p id="d2e1355">The nested model is centred over mainland Europe (32.75 to 61.25° N, <inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> to 40° E). Lateral boundary conditions to the European domain were created from a consistent global GEOS-Chem model run at <inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula>, with three-hourly output fields. The nested model was run with a 5 min transport timestep and 10 min chemistry timestep.</p>
      <p id="d2e1384">Prior combustion emissions of NO<sub><italic>x</italic></sub> and CO<sub>2</sub> are taken from the CAMS-REG v8.1 emissions inventory at <inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.05</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula> resolution (Fig. <xref ref-type="fig" rid="F2"/>) <xref ref-type="bibr" rid="bib1.bibx31" id="paren.19"/>. CAMS-REG provides a high-resolution gridded emission dataset derived from a combination of country-reported inventories, activity statistics, and emission factors following established reporting frameworks (e.g. UNFCCC for greenhouse gases and EMEP for air pollutants). Country-level emissions are compiled across detailed sector and fuel categories and subsequently spatially disaggregated using proxy datasets such as population density, land use, transport networks, and point source information. As a result of this construction, spatial emission patterns often reflect national boundaries, due to differences in reporting methodologies, activity data quality, and emission factor assumptions between countries.</p>

      <fig id="F2" specific-use="star"><label>Figure 2</label><caption><p id="d2e1429">CAMS-REG v8.1 2021 emissions on the GEOS-Chem model grid (<inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.3125</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula>). Top panel shows CO<sub>2</sub> (left panels), NO<sub><italic>x</italic></sub> (middle panels), and their ratio (right panels) for six main combustion sectors. The bottom panel shows the temporal profiles for Public Power, Industry, Other Stationary Combustion, and Road Transport.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f02.jpg"/>

        </fig>

      <p id="d2e1472">Temporal variability in emissions (monthly, daily, hourly) is represented using sector-based scaling factors provided by TNO (Netherlands Organisation for Applied Scientific Research) (Fig. <xref ref-type="fig" rid="F2"/>). Combustion sectors include public power, industry, road transport, ships, aviation, off-road machinery, and other combustion sources. Emissions from non-combustion sources in the CAMS-REG v8.1 inventory include fugitives, waste, solvents, and agriculture. We also prescribe NO<sub><italic>x</italic></sub> emissions from soil and lightning, which are parameterised within GEOS-Chem <xref ref-type="bibr" rid="bib1.bibx59 bib1.bibx18" id="paren.20"/>. All non-combustion sources of NO<sub><italic>x</italic></sub> are kept fixed at their prior values as they are not directly coupled to the NO<sub><italic>x</italic></sub>–CO<sub>2</sub> relationship considered in this study. For non-fossil-fuel CO<sub>2</sub> sources and sinks we use the CarbonTracker Europe High Resolution (CTE-HR) inventory <xref ref-type="bibr" rid="bib1.bibx56" id="paren.21"/>, which combines the SiB4 biosphere model v4.2-COS for net ecosystem production (NEP), GFAS fire emissions, and Jena CarboScope ocean fluxes at a <inline-formula><mml:math id="M132" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.5</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula> resolution.</p>
      <p id="d2e1545">To efficiently and effectively incorporate NO<sub><italic>x</italic></sub> into our model, we use the methodology presented in <xref ref-type="bibr" rid="bib1.bibx47" id="text.22"/>. In that work, we found that for unchanged meteorological conditions but varying emissions, the instantaneous NO<sub><italic>x</italic></sub> chemical rates of change can be estimated by scaling the baseline (unperturbed, or prior) rate of change, <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> by the relative change in local NO<sub><italic>x</italic></sub> concentration, [NO<sub><italic>x</italic></sub>]<sup>′</sup>/[NO<sub><italic>x</italic></sub>]<sup>B</sup>, where [NO<sub><italic>x</italic></sub>]<sup>′</sup> is the new concentration and [NO<sub><italic>x</italic></sub>]<sup>B</sup> is the baseline. This reproduces the NO<sub><italic>x</italic></sub> chemical rates of change with high fidelity (<inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.0</mml:mn></mml:mrow></mml:math></inline-formula>). We use the GEOS-Chem full-chemistry simulation to generate hourly offline fields for the baseline NO<sub><italic>x</italic></sub> concentrations, [NO<sub><italic>x</italic></sub>]<inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mi mathvariant="normal">B</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>] and instantaneous NO<sub><italic>x</italic></sub> net chemistry rates, <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d2e1790">For all additional model runs within the data assimilation procedure, we use the carbon model, where NO<sub><italic>x</italic></sub> was introduced as a new tracer species. We read in these offline fields and calculate the updated NO<sub><italic>x</italic></sub> chemistry net rate of change, <inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mi mathvariant="normal">′</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for each grid point (<inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>) and time step (<inline-formula><mml:math id="M156" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>): 

            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M157" display="block"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msup><mml:mi>R</mml:mi><mml:mi mathvariant="normal">B</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mfenced open="[" close="]"><mml:mrow><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:msup><mml:mfenced close="]" open="["><mml:mrow><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mi mathvariant="normal">B</mml:mi></mml:msup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          We include the NO<sub><italic>x</italic></sub> chemistry into the carbon-only simulation through the Kinetic PreProcessor (KPP) mechanism, which describes the production and decay processes of NO<sub><italic>x</italic></sub> using the updated calculated rates of change. Additionally, since the partitioning NO<sub>2</sub> : NO<sub><italic>x</italic></sub> was found to be stable under emission perturbations <xref ref-type="bibr" rid="bib1.bibx47" id="paren.23"/>, we store offline fields of the  partitioning ratio at each grid point from full chemistry runs, enabling the conversion of simulated NO<sub><italic>x</italic></sub> concentrations to NO<sub>2</sub> columns for comparison with TROPOMI observations.</p>
      <p id="d2e2044">The offline NO<sub><italic>x</italic></sub> chemistry scheme has previously been validated for moderate (20 %) emission perturbations <xref ref-type="bibr" rid="bib1.bibx47" id="paren.24"/>. In this study, we extend this validation to the larger perturbations encountered in the inversion by comparing the offline parameterisation against full GEOS-Chem chemistry for representative days in each season. This analysis (Fig. <xref ref-type="fig" rid="FA1"/>) shows that the offline scheme accurately reproduces NO<sub><italic>x</italic></sub> chemical loss rates (<inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.94</mml:mn></mml:mrow></mml:math></inline-formula>) and preserves the stability of the NO<sub>2</sub> : NO<sub><italic>x</italic></sub> partitioning (<inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>), supporting its use across the range of perturbations considered here.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Ensemble Kalman Filter</title>
      <p id="d2e2128">We use an existing EnKF framework that has been widely used to estimate CO<sub>2</sub> and methane fluxes from atmospheric data <xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx66 bib1.bibx13 bib1.bibx40 bib1.bibx14 bib1.bibx67 bib1.bibx15" id="paren.25"/>. The ensemble approach simplifies the calculation of these matrices by approximating the background error covariance matrix (<inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>) through a finite sample of model realisations and avoids the needs to calculate an adjoint model.</p>
      <p id="d2e2154">We introduce an ensemble of <inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">100</mml:mn></mml:mrow></mml:math></inline-formula> perturbation states. The ensemble approach represents uncertainty in the state vector using a set of model realisations, from which the ensemble mean and perturbations are used to approximate the background error covariance. In our implementation, we use the EnKF to assimilate satellite observations of NO<sub>2</sub> column (<inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), to update prior knowledge of our state vector, NO<sub><italic>x</italic></sub> emission scaling factors (<inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>), resulting in posterior scaling factor estimates (<inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>):

            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M178" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:mfenced open="[" close="]"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi>H</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math id="M179" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> is the observation operator that maps the state vector to observation space, which comprises the GEOS-Chem model to relate changes in NO<sub><italic>x</italic></sub> emissions to changes in atmospheric NO<sub>2</sub> with the resulting profiles sampled at the time and location of TROPOMI observations and subsequently convolved with scene-dependent averaging kernels.</p>
      <p id="d2e2288"><inline-formula><mml:math id="M182" display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula> is the Kalman gain matrix and is given by:

            <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M183" display="block"><mml:mrow><mml:mi mathvariant="bold">K</mml:mi><mml:mo>≈</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi mathvariant="bold">Y</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:msup><mml:mfenced close="]" open="["><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi mathvariant="bold">Y</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi mathvariant="bold">Y</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:mfenced><mml:mi>T</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:mi mathvariant="bold">R</mml:mi></mml:mrow></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi mathvariant="bold">X</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> represents the ensemble of deviations from the prior ensemble mean in state space and <inline-formula><mml:math id="M185" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi mathvariant="bold">Y</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> represents the corresponding ensemble of deviations in the observation space. These quantities are constructed from the ensemble perturbations of the state vector and their mapped equivalents in observation space.</p>
      <p id="d2e2385">To reduce the impact of spurious long-range correlations, we applied localisation to the Kalman gain. We compute the distance between each grid cell (<inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:msub><mml:mi>d</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) and each valid observation, and apply a Gaussian tapering function <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:mi>exp⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>d</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:mi>l</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> with a decorrelation length scale <inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:mi>l</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula> km. This localisation is applied multiplicatively to the Kalman gain, element-wise.</p>
      <p id="d2e2441">For our study, we define <inline-formula><mml:math id="M189" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula> as a diagonal matrix that incorporates satellite retrieval uncertainty using the TROPOMI precision values, and includes a fixed model error of <inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<sup>−2</sup>, corresponding to the average reconstruction error of NO<sub>2</sub> columns derived from scaled offline chemistry <xref ref-type="bibr" rid="bib1.bibx47" id="paren.26"/>. We also employed an adaptive inflation scheme that increased the observation error variance (diagonal elements of <inline-formula><mml:math id="M193" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula>) by a factor of 10 whenever the absolute value of the innovation surpassed a significant threshold (<inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mo>|</mml:mo><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">16</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<sup>−2</sup>).</p>
      <p id="d2e2533">The ensemble error covariance is derived using our understanding of the CAMS-REG v8.1 emission uncertainties <xref ref-type="bibr" rid="bib1.bibx55" id="paren.27"/> as well as the error correlation between the two species. The cross-species error correlation (<inline-formula><mml:math id="M196" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>) is a global product developed under the CORSO project. It is based on the assumption that the error correlation between NO<sub><italic>x</italic></sub> and CO<sub>2</sub> occurs from their shared activity data, whereas the emission factor errors are independent. For each emission sector the uncertainties in the activity data (including spatial disaggregation) and emission factors are estimated from the IPCC guidelines (CO<sub>2</sub>) <xref ref-type="bibr" rid="bib1.bibx9" id="paren.28"/>, the EMEP guidebook (NO<sub><italic>x</italic></sub>) <xref ref-type="bibr" rid="bib1.bibx38" id="paren.29"/> and information on the spatial disaggregation of the global EDGAR emission inventory <xref ref-type="bibr" rid="bib1.bibx10" id="paren.30"/>. Since these uncertainties are defined per fuel type, information on the fuel mix per country <xref ref-type="bibr" rid="bib1.bibx4" id="paren.31"/> is used to aggregate these uncertainties. A look-up table is created that lists the error correlation as a function of the sectoral uncertainty in activity data and emission factors. The higher the uncertainty in the activity data, the larger the cross-species error correlation.</p>
      <p id="d2e2596">The ensemble background error covariance matrix (<inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>) was constructed using the NO<sub><italic>x</italic></sub> and CO<sub>2</sub> flux uncertainties (<inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) together with the cross-species error correlation (<inline-formula><mml:math id="M206" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>):

            <disp-formula id="Ch1.E4" content-type="numbered"><label>4</label><mml:math id="M207" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:mtable class="matrix" columnalign="center center" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>n</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>c</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>c</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where the values of <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M210" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> are prescribed from the CAMS-REG v8.1 uncertainty estimates and the CORSO cross-species correlation product, and are assumed to be constant in time (i.e. no seasonal dependence). Emission errors are represented using a spatially correlated prior ensemble. Spatial correlations in the prior ensemble are based on the sector-specific correlation lengths provided by the CAMS-REG uncertainty dataset. These correlation lengths vary by emission sector (typically ranging from <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> to 80 km), reflecting differences in the spatial representativeness of emission sources. Given the use of a 1 d assimilation window, temporal correlations in emission errors are not represented in the prior error covariance. Emission errors are therefore treated as independent between successive days.</p>
      <p id="d2e2762">We generate a prior ensemble of NO<sub><italic>x</italic></sub> emission scalings by sampling from a bivariate normal distribution, <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:mi mathvariant="script">N</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> at each grid cell. This produces spatially resolved perturbations that preserve both the magnitude of uncertainties and the correlation between NO<sub><italic>x</italic></sub> and CO<sub>2</sub> errors (Fig. <xref ref-type="fig" rid="F3"/>).</p>

      <fig id="F3" specific-use="star"><label>Figure 3</label><caption><p id="d2e2817">NO<sub><italic>x</italic></sub> and CO<sub>2</sub> uncertainties (<inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) from CAMS-REG v8.1 emissions <xref ref-type="bibr" rid="bib1.bibx55" id="paren.32"/>, the CORSO cross-species error correlation product (<inline-formula><mml:math id="M220" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>), and the prior error defined as the ensemble-based standard deviation of the emission perturbations derived from sampling the prior error covariance matrix (<inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>). All panels share a common colour scale for ease of comparison. The uncertainty fields (<inline-formula><mml:math id="M222" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and the combined prior ensemble error) are expressed as relative standard deviations (dimensionless, defined as <inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>/</mml:mo><mml:mi>E</mml:mi></mml:mrow></mml:math></inline-formula>), while the correlation field (<inline-formula><mml:math id="M225" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>) is also dimensionless, representing the correlation coefficient between NO<sub><italic>x</italic></sub> and CO<sub>2</sub> errors.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f03.png"/>

        </fig>

      <p id="d2e2949">The forward-modelled NO<sub>2</sub> columns from each ensemble member (<inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>) are compared to satellite retrievals to compute the innovation vector <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">f</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. We restrict this comparison to grid cells that include valid satellite data (qa <inline-formula><mml:math id="M231" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.75). A spatial mask is applied to exclude edge regions and unphysical retrievals. Edge regions correspond to the outer two GEOS-Chem grid boxes of the domain, and retrievals with NO<sub>2</sub> columns greater than <inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">17</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<sup>−2</sup> are removed as nonphysical.</p>
      <p id="d2e3050">Since NO<sub><italic>x</italic></sub> is short-lived, observations are generally insensitive to emission changes from previous days so we use a data assimilation window of 1 d. At the end of each assimilation cycle, the posterior emission scaling factors are applied to update the model state through the GEOS-Chem restart file, which is then used to initialise the next day's simulation. Sensitivity tests (Fig. <xref ref-type="fig" rid="FA3"/>) show that perturbations introduced through these restart adjustments have a negligible impact on simulated NO<sub>2</sub> columns by the second day, indicating that the observations are primarily sensitive to emission changes occurring within the previous day.</p>
      <p id="d2e3073">Due to the non-linear relationship between NO<sub><italic>x</italic></sub> emissions and atmospheric NO<sub>2</sub>, it is possible to maximise error reduction by repeating the ensemble runs multiple times in an iterative data assimilation procedure. Up to four iterations were performed, however the procedure is broken early if the percentage reduction in mean absolute error (MAE) falls below 1 %, suggesting a plateau in model improvement.</p>
      <p id="d2e3094">The posterior flux time series can exhibit relatively strong day-to-day variability, likely driven by gaps and inhomogeneities in the observational coverage that introduce intermittent and uneven constraints within the EnKF system. Additional contributions may arise from underestimated observation or model–data mismatch uncertainties, retrieval artefacts, and transport model errors, which can introduce high-frequency noise into the posterior solution. To reduce this noise and to better isolate robust temporal signals, we apply a Savitzky–Golay filter to the posterior emission estimates using a 5 d window and a third-order polynomial <xref ref-type="bibr" rid="bib1.bibx5" id="paren.33"/>.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Conversion of NO<sub><italic>x</italic></sub> scaling factors to CO<sub>2</sub> flux adjustments</title>
      <p id="d2e3127">The inference of ffCO<sub>2</sub> emissions from posterior NO<sub><italic>x</italic></sub> fluxes relies on the use of prescribed CAMS-REG NO<sub><italic>x</italic></sub> : CO<sub>2</sub> emission ratios that vary by sector and spatial location but are assumed to be temporally invariant. CO<sub>2</sub> emissions are therefore inferred diagnostically from the posterior NO<sub><italic>x</italic></sub> emissions, rather than being directly optimised within the EnKF framework. In practice, this is implemented by applying the posterior NO<sub><italic>x</italic></sub> scaling factors uniformly to co-located combustion-related CO<sub>2</sub> emissions at each grid cell, implicitly assuming a fixed sector-weighted NO<sub><italic>x</italic></sub> : CO<sub>2</sub> ratio determined by the relative contributions of individual sectors within that grid cell.</p>
      <p id="d2e3221">The prior error covariance matrix <inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi>f</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is constructed using prescribed uncertainties for NO<sub><italic>x</italic></sub> (<inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and CO<sub>2</sub> (<inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) emissions, together with a cross-species error correlation (<inline-formula><mml:math id="M256" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>). This defines a prior uncertainty structure in which NO<sub><italic>x</italic></sub> and CO<sub>2</sub> emissions exhibit correlated variability, reflecting their shared dependence on underlying activity data and emission factors. However, CO<sub>2</sub> emissions are not included in the inversion state vector and are therefore not directly optimised. The cross-species correlation is used only to represent consistent prior assumptions about the relationship between NO<sub><italic>x</italic></sub> and CO<sub>2</sub> uncertainties, rather than implying an explicit propagation of CO<sub>2</sub> uncertainty through the inversion.</p>
      <p id="d2e3338">The assumption of temporally fixed emission ratios may introduce systematic biases in the inferred CO<sub>2</sub> emissions. In addition, any inaccuracies in the underlying CAMS-REG estimates of these emission ratios will propagate directly into the inferred CO<sub>2</sub> fluxes. We therefore treat this assumption as a central limitation of the present framework and acknowledge its implications when interpreting the results.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Statistical metrics for uncertainty and model performance</title>
      <p id="d2e3368">To quantify the reduction in uncertainty within the ensemble we calculate the ensemble-based error reduction (ER):

            <disp-formula id="Ch1.E5" content-type="numbered"><label>5</label><mml:math id="M265" display="block"><mml:mrow><mml:mi mathvariant="normal">ER</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">100</mml:mn><mml:mo>×</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">post</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">pri</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where, <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">pri</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">post</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the prior and posterior ensemble standard deviations, respectively. To quantify the model agreement with observations between our prior and posterior emission estimates, we assess the pearson correlation coefficient (<inline-formula><mml:math id="M268" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>), the mean bias, and the mean absolute error (MAE).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
      <p id="d2e3445">In this section, we report our posterior European NO<sub><italic>x</italic></sub> emission estimates and the corresponding ffCO<sub>2</sub> estimates for 2021, and the evaluation of the resulting posterior atmospheric NO<sub>2</sub> and CO<sub>2</sub> mole fractions at sites over the GEOS-Chem European domain (which includes parts of continental Europe and North Africa).</p>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Inversion results</title>
      <p id="d2e3491">We find that our inversion leads to a systematic reduction of the state vector uncertainty, with mean ensemble-based Europe-wide error reductions of 5.7 %, 4.7 %, 4.2 %, and 4.6 % during DJF, MAM, JJA, and SON, respectively (Fig. <xref ref-type="fig" rid="F4"/>). These values are calculated from daily error reduction fields at the model grid-cell resolution (<inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.3125</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula>), averaged over each season and subsequently across the European domain. This result demonstrates that TROPOMI NO<sub>2</sub> column data provide effective constraints on NO<sub><italic>x</italic></sub> emission estimates, even though we have reasonable bottom-up inventory knowledge. We note that the larger uncertainty reductions occur over major emission regions such as London, Paris, Madrid – as well as in North Africa, where the prior ensemble spread is highest (Fig. <xref ref-type="fig" rid="F3"/>).</p>

      <fig id="F4" specific-use="star"><label>Figure 4</label><caption><p id="d2e3534">Seasonal maps of the mean ensemble based error reduction (Eq. <xref ref-type="disp-formula" rid="Ch1.E5"/>). Error reduction is computed at the native model resolution (<inline-formula><mml:math id="M276" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.3125</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula>) and daily time step from the ratio of posterior to prior ensemble spread. Seasonal values are obtained by averaging these daily error reduction fields over each season (DJF, MAM, JJA, SON). Reported mean values represent spatial averages over all grid cells within the European domain. The locations of the 12 high emitting countries are labelled in the first panel.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f04.png"/>

        </fig>

      <p id="d2e3561">These posterior updates also translate into a general improvement in model minus observation agreement, with an annual increase in Pearson <inline-formula><mml:math id="M277" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> from 0.42 to 0.54, a reduction in mean absolute error of <inline-formula><mml:math id="M278" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">14</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<sup>−2</sup>, and an overall improvement in the negative bias by <inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:mn mathvariant="normal">6</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">13</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<sup>−2</sup>. Figure <xref ref-type="fig" rid="F5"/>a shows the prior and posterior model agreement for each month of the year. The correlation exhibits a modest increase in every month. MAE decreases in all months apart from July, where the prior error was already small, and the negative bias improves in all months apart from May, June, and July, where the prior bias was again already small. Overall the magnitude of these changes remains modest when aggregated across the full domain. This reflects the fact that model–observation mismatch is influenced by factors beyond emission errors alone, including boundary conditions, and initial concentrations, which are not directly constrained within the inversion framework.</p>

      <fig id="F5" specific-use="star"><label>Figure 5</label><caption><p id="d2e3631"><bold>(a)</bold> European-wide monthly changes in model performance against TROPOMI NO<sub>2</sub> after posterior flux updates, shown as differences between posterior–observation and prior–observation statistics. Improvements are quantified using Pearson <inline-formula><mml:math id="M283" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>, mean absolute error (MAE), and  mean bias. <bold>(b)</bold> Relationship between prior model error (observation–model) and posterior adjustment (posterior–prior) at the TROPOMI retrieval level, based on all available observations aggregated over the full year (2021). Each point represents an individual observation–model comparison, with colour indicating data density.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f05.png"/>

        </fig>

      <p id="d2e3661">Figure <xref ref-type="fig" rid="F5"/>b shows the relationship between prior error and change in model column (posterior – prior) in TROPOMI observation space. The majority of data points are clustered around the <inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> line, indicating that posterior adjustments scale with the magnitude and sign of the prior error and act to systematically reduce model–observation mismatch. Deviations from this behaviour, where the posterior adjustment is smaller than the prior error, are primarily associated with regions where NO<sub>2</sub> columns are weakly sensitive to combustion emission changes. In these cases, the signal is likely dominated by background concentrations, which are influenced by boundary and initial conditions, as well as non-combustion sources (e.g. fugitive, waste, solvent, and agricultural emissions) and biogenic processes (e.g. soil NO<sub><italic>x</italic></sub> emissions), which are not directly optimised in the inversion.</p>
      <p id="d2e3696">Figure <xref ref-type="fig" rid="F6"/> shows the comparison of the prior and posterior ffCO<sub>2</sub> fluxes for Europe in 2021. We find a consistent reduction in emissions uncertainty, from a mean aggregate uncertainty of 5.6 % in the prior to 3.3 % in the posterior. For aggregated flux uncertainties, grid-level errors are combined assuming no spatial or temporal correlation by summing variances in quadrature. This, therefore should be considered a lower-bound estimate of uncertainty.</p>

      <fig id="F6" specific-use="star"><label>Figure 6</label><caption><p id="d2e3712"><bold>(a)</bold> Time series of total European daily fluxes for NO<sub><italic>x</italic></sub> (left panel) and ffCO<sub>2</sub> (right panel) for 2021. Prior fluxes are shown in black with grey uncertainty, and posterior fluxes in red with light red shading indicating uncertainty. <bold>(b)</bold> Mean monthly posterior increment maps show the average regional trends of flux changes (red <inline-formula><mml:math id="M290" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> increase, blue <inline-formula><mml:math id="M291" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> decrease relative to prior).</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f06.jpg"/>

        </fig>

      <p id="d2e3758">Our European posterior ffCO<sub>2</sub> fluxes exhibit a more pronounced seasonal cycle than found in prior data (Fig. <xref ref-type="fig" rid="F6"/>a), with larger values during autumn and winter months, most notably during February, November, and December. Conversely, fluxes between mid April and early August remain close to prior values but with a smaller uncertainty. Larger posterior adjustments during the colder months may reflect challenges in bottom-up inventories for domestic heating in winter, which are highly seasonal and subject to substantial uncertainty due to their dependence on meteorology, fuel use, and assumed temporal profiles <xref ref-type="bibr" rid="bib1.bibx8 bib1.bibx20 bib1.bibx31" id="paren.34"/>.</p>
      <p id="d2e3776">Figure <xref ref-type="fig" rid="F6"/>b shows monthly mean posterior minus prior increments across Europe. Colder months are characterised by widespread increases (10 %–177 % total European daily flux change) relative to the prior while the warmer months show a marked decrease (down to <inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">22</mml:mn></mml:mrow></mml:math></inline-formula> % total European daily flux change), particularly over northwestern Europe (United Kingdom, Germany, Netherlands, Belgium), together with some localised increases (Spain, Italy, Turkey). It is also important to note that the interpretation of posterior flux increments should be considered in the context of spatial variations in prior uncertainty. In particular, regions such as North Africa exhibit substantially higher prior uncertainties, which allow larger adjustments but reduce the robustness of the inferred changes compared to more tightly constrained regions over Europe.</p>
      <p id="d2e3791">Figure <xref ref-type="fig" rid="F7"/> shows the national ffCO<sub>2</sub> fluxes for 12 high emitting European countries for 2021 with the corresponding mean surface temperature values derived from the GEOS-FP reanalysis. Generally, we find that individual countries follow the same pattern as the aggregated European total emission trend. Countries that show the most significant and consistent increases in emissions during the colder months include France, Spain, Italy, and Turkey. Reductions in fluxes are observed during some of the summer months in the Netherlands, Belgium, the United Kingdom, and Germany; however, these changes are generally within the range of the prior uncertainty spread.</p>

      <fig id="F7" specific-use="star"><label>Figure 7</label><caption><p id="d2e3807">Time series of daily ffCO<sub>2</sub> emissions for 12 high emitting European countries during 2021. Prior fluxes are shown in black with grey uncertainty, and posterior fluxes in red with red shading indicating uncertainty (left <inline-formula><mml:math id="M296" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis). Mean daily temperature is also shown in blue (right <inline-formula><mml:math id="M297" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis). For each country, the reported annual change represents the total posterior adjustment relative to the prior, expressed both as a percentage change in annual emissions and as a multiple of the prior uncertainty (<inline-formula><mml:math id="M298" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula>).</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f07.png"/>

        </fig>

      <p id="d2e3846">Across all countries, annual emissions increase relative to the prior, ranging from 20 % (United Kingdom) to 91 % (Turkey). The analogous national emission patterns and temperature variation for NO<sub><italic>x</italic></sub> is shown in Fig. <xref ref-type="fig" rid="FA2"/>. The same pattern of increased correlation with temperature is prevalent with the NO<sub><italic>x</italic></sub> posterior state, and emission increases are also significant but slightly smaller in size, ranging from 11 % (Sweden) to 83 % (Turkey).</p>
      <p id="d2e3869">We find a clear negative correlation between our ffCO<sub>2</sub> fluxes and local mean temperature, largely reflecting emission peaks during colder winter periods. In February, many countries experienced a considerable number of days with low temperatures, which coincided with a relative increase in emissions. This effect is most pronounced in Sweden, where the mean daily temperature stayed below <inline-formula><mml:math id="M302" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> °C throughout the month, occasionally dropping below <inline-formula><mml:math id="M303" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> °C, accompanied by a distinct spike in emissions compared to the rest of the year. Similar, though less extreme, cold periods were observed in Germany, the UK, the Netherlands, Belgium, and Turkey, each corresponding to relative emission peaks during February. The posterior ffCO<sub>2</sub> shows a strengthened temperature-flux relationship as a consistent increase in the gradient of the correlation between the two variables (Fig. <xref ref-type="fig" rid="FA4"/>). The prior state exhibits two distinct branches, reflecting prescribed weekday and weekend emission regimes with no variability within each category. In the posterior, these branches merge into a more continuous relationship with temperature, indicating the introduction of day-to-day variability while retaining the underlying weekly emission cycle.</p>
      <p id="d2e3913">At higher temperatures, increased energy demand for cooling may contribute to ffCO<sub>2</sub> emissions, particularly in the power sector. However, this effect is generally weaker and more regionally variable than winter heating demand in Europe, resulting in a dominant negative temperature–emission relationship. Residential heating sources (e.g. wood and coal combustion) exhibit strong seasonal variability and are more strongly reflected in NO<sub><italic>x</italic></sub> than CO<sub>2</sub>, which may lead to an amplified winter response in the inferred ffCO<sub>2</sub> emissions. In addition, uncertainties in NO<sub><italic>x</italic></sub> : CO<sub>2</sub> emission ratios and the weaker NO<sub><italic>x</italic></sub> signal associated with electricity-driven summer cooling (potentially supplied by low-NO<sub><italic>x</italic></sub> generation) may bias the inferred temperature–emission relationship.</p>
      <p id="d2e3989">To provide context using an independent bottom-up benchmark, Fig. 8 compares the annual total ffCO<sub>2</sub> emissions for each of the 12 countries in both the prior and posterior with estimates from EDGAR. The posterior results show mixed agreement with this independent dataset. For Sweden, Romania, Turkey, Spain, and the United Kingdom, the increases in annual emissions lead to improved agreement with EDGAR. This is particularly notable for Turkey, where the large posterior increase (<inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">91</mml:mn></mml:mrow></mml:math></inline-formula> %) leads to a substantially better agreement with the independent inventory.  In contrast, the remaining seven countries show a deterioration in agreement following the posterior updates, with increases in absolute differences ranging from 25 % to over 100 % in Austria (see Table <xref ref-type="table" rid="TA1"/>).</p>

      <fig id="F8" specific-use="star"><label>Figure 8</label><caption><p id="d2e4015">Annual ffCO<sub>2</sub> emissions by country for 2021. Comparison of prior (CAMS-REG, grey), posterior (red), and EDGAR (pink) estimates. Error bars indicate uncertainties for prior and posterior emissions. EDGAR provides an independent bottom-up benchmark.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f08.png"/>

        </fig>

      <p id="d2e4033">In particular, the substantial increases inferred for Italy, France, and Germany result in pronounced overestimations relative to both CAMS-REG and EDGAR, exceeding 100 000 Mt CO<sub>2</sub>. These discrepancies are significantly larger than the differences between bottom-up inventories, suggesting that the inferred changes in these regions could be influenced by limitations in the inversion framework rather than reflecting true emission biases.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Evaluation of the posterior solution</title>
      <p id="d2e4053">We evaluate our posterior emission estimates of NO<sub><italic>x</italic></sub> and ffCO<sub>2</sub> by using the GEOS-Chem model as a forward model to calculate the associated atmospheric distributions of NO<sub>2</sub> and CO<sub>2</sub>. We compare these posterior atmospheric distributions with in situ NO<sub>2</sub> and CO<sub>2</sub> measurements across Europe and with NASA OCO-2 column observations of CO<sub>2</sub>.</p>
      <p id="d2e4120">Figure <xref ref-type="fig" rid="F9"/> shows the change in model agreement with the EEA in situ NO<sub>2</sub> monitoring network. We find a relatively strong negative bias is present in both the prior and posterior simulations (<inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18.8</mml:mn></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M326" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16.4</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M327" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<sup>−3</sup>, respectively). Nevertheless, the posterior values show a consistent improvement in correlation, alongside reductions in both MAE and bias. On a monthly basis, MAE decreases in every month of the year, with the largest reductions occurring during the colder months when the posterior flux adjustments are greatest. Correlation improves in all months, but the improvement is most obvious in summer, where prior correlations for June and July were non-existent (<inline-formula><mml:math id="M329" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>) in the prior.</p>

      <fig id="F9" specific-use="star"><label>Figure 9</label><caption><p id="d2e4189">Model agreement with the EEA NO<sub>2</sub> in situ network. <bold>(a)</bold> Observed versus modelled NO<sub>2</sub> concentrations for prior and posterior simulations, with each point representing a model–observation pair for a given time step and station across 2021. <bold>(b)</bold> Monthly performance metrics for prior (blue) and posterior (red), computed from all model–observation pairs within each month.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f09.png"/>

        </fig>

      <p id="d2e4223">The negative model bias is expected because the EEA in situ NO<sub>2</sub> sites are predominantly located in urban or high-combustion environments, often close to traffic and other emission sources, and therefore sample strong, localised plumes. Since NO<sub>2</sub> has a short chemical lifetime of hours to  1 d, this leads to strong spatial gradients and rapid decay away from emission sources. These plumes occur at spatial scales much smaller than the GEOS-Chem grid resolution (<inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:mi mathvariant="italic">°</mml:mi><mml:mo>×</mml:mo><mml:mn mathvariant="normal">0.3125</mml:mn><mml:mi mathvariant="italic">°</mml:mi></mml:mrow></mml:math></inline-formula>) and are therefore not fully resolved by the model. Instead, they are artificially diluted within the grid-box-mean representation of the lowest model layer. As a result, the model smooths sharp near-source enhancements and systematically underestimates point observations, contributing to the persistent negative bias seen in the comparisons. Overall, this consistent negative bias limits the model agreement in both the prior and posterior, and leads to relatively small performance improvement.</p>
      <p id="d2e4260">Figure <xref ref-type="fig" rid="F10"/> shows a similar model assessment of posterior atmospheric concentrations with in situ CO<sub>2</sub>. Compared with prior values, the posterior CO<sub>2</sub> mole fraction show an overall improvement. The month-to-month comparison shows more variability than the NO<sub>2</sub> comparison likely due to additional uncertainties from biogenic fluxes. The correlation improves in all months except June and July. The negative bias is substantially reduced in October, November, and December, supporting the relative increases in posterior fluxes for these months. Conversely, the negative bias at these in situ sites increases in the posterior state during the warmer months (April–September), suggesting that either the posterior increment for CO<sub>2</sub> combustion fluxes should be larger, or that there are inaccuracies in the biogenic uptake in the SiB4 model.</p>

      <fig id="F10" specific-use="star"><label>Figure 10</label><caption><p id="d2e4303">Model agreement with ICOS, and DECC CO<sub>2</sub> in situ network. <bold>(a)</bold> Observed versus modelled CO<sub>2</sub> concentrations for prior and posterior simulations, with each point representing a model–observation pair for a given time step and station across 2021. <bold>(b)</bold> Monthly performance metrics for prior (blue) and posterior (red), computed from all model–observation pairs within each month.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f10.png"/>

        </fig>

      <p id="d2e4336">Figure <xref ref-type="fig" rid="F11"/> shows the change in model–observation MAE from prior to posterior at individual stations for each season. The improvement in agreement with the in situ NO<sub>2</sub> network is widespread. Almost all sites show improved agreement across all seasons, with only a small number exhibiting degradation in summer. The largest improvements are observed in winter and autumn. A slight deterioration is observed at nine sites across Northern Europe (Belgium, the Netherlands, Germany, Sweden, and Norway) and at one site in northern Spain, accounting for less than 5 % of the monitoring network. All remaining sites exhibit smaller but consistently positive improvements during the summer period. In contrast, the CO<sub>2</sub> in situ comparison shows substantially greater spatial variability. Approximately 50 % of sites show improvement in summer, increasing to 55 % in winter, 65 % in spring, and 77 % in autumn. Only one site (Järvselja, Estonia) exhibits a consistent degradation across all four seasons; this is a rural forest site likely strongly influenced by local biogenic fluxes. Conversely, nine sites show consistent improvement in all seasons, including four in Germany, two in France, and one each in the United Kingdom (Shetland), Italy, and Poland.</p>

      <fig id="F11" specific-use="star"><label>Figure 11</label><caption><p id="d2e4361">Seasonal changes in model–observation agreement at in situ sites for <bold>(a)</bold> NO<sub>2</sub> and <bold>(b)</bold> CO<sub>2</sub>. Each panel shows one season (DJF, MAM, JJA, SON). Colours indicate the change in mean absolute error (<inline-formula><mml:math id="M345" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>MAE <inline-formula><mml:math id="M346" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> posterior <inline-formula><mml:math id="M347" display="inline"><mml:mi mathvariant="normal">−</mml:mi></mml:math></inline-formula> prior) at each station, computed from all model–observation pairs within each season. Negative values (blue) indicate improved agreement, while positive values (red) indicate degradation.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f11.png"/>

        </fig>

      <p id="d2e4417">The majority of the CO<sub>2</sub> monitoring sites used here are classified as rural background or elevated stations, designed to sample regionally representative air masses. As a result, these sites are less sensitive to localised fossil fuel emission plumes compared to the predominantly urban EEA NO<sub>2</sub> network. This reduced sensitivity, combined with the strong influence of biogenic fluxes on atmospheric CO<sub>2</sub>, likely explains the mixed response in posterior agreement change.</p>

      <fig id="F12" specific-use="star"><label>Figure 12</label><caption><p id="d2e4449">Model agreement with OCO-2. <bold>(a)</bold> Observed versus modelled CO<sub>2</sub> concentrations for prior and posterior simulations, where each point represents a model–observation pair at a given time step and station. <bold>(b)</bold> Monthly performance metrics for prior (blue) and posterior (red), computed from all model–observation pairs within each month.</p></caption>
          <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f12.png"/>

        </fig>

      <p id="d2e4473">Finally, we assess the posterior comparison with OCO-2 data (Fig. <xref ref-type="fig" rid="F12"/>). Overall, this shows negligible improvement compared with the prior data. The shifts in correlation and error are an order of magnitude smaller than those seen in the in situ data. This is expected as column CO<sub>2</sub> observations are much less sensitive to surface emission changes, with variability dominated by large-scale biogenic fluxes that mask the comparatively small contribution from localised ffCO<sub>2</sub> emissions.</p>
      <p id="d2e4496">Overall, we see a marginal improvement in agreement with the annual data, with the correlation increasing slightly from 0.74 to 0.75. OCO-2 exhibits a positive bias, which is slightly reduced in June and July but worsens in the autumn and winter. Month-to-month correlations show small improvements (<inline-formula><mml:math id="M354" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>r</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>) in January, May, September, and December, and negligible changes in remaining months (<inline-formula><mml:math id="M355" display="inline"><mml:mrow><mml:mo>|</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>r</mml:mi><mml:mo>|</mml:mo><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.003</mml:mn></mml:mrow></mml:math></inline-formula>).These seasonal biases are likely driven primarily by uncertainties in biogenic fluxes, as well as boundary and initial conditions, rather than changes in fossil fuel emissions. This highlights the intrinsic difficulty of constraining fossil fuel CO<sub>2</sub> emissions using column CO<sub>2</sub> observations alone.</p>
      <p id="d2e4549">In addition, the positive bias seen in OCO-2 comparisons contrasts with the negative bias found in surface in situ measurements, reflecting the differing sensitivities of these observing systems. Column-averaged CO<sub>2</sub> observations are strongly influenced by large-scale transport and boundary conditions, which can introduce a positive bias if background concentrations are overestimated. In contrast, near-surface observations are more sensitive to local fluxes and boundary layer processes, and the relatively coarse vertical resolution of the model can introduce a negative bias when comparing modelled near-surface concentrations with point measurements. These differences highlight the challenges in reconciling column and surface constraints within a single inversion framework.</p>
      <p id="d2e4562">Overall, the posterior results demonstrate measurable improvements in model–observation agreement with independent datasets, alongside a strengthened relationship between emissions and temperature, and an improved agreement with EDGAR for a subset of countries. At the same time, the inferred emission changes are substantial, with all national annual adjustments exceeding the magnitude of the prior uncertainty by factors of approximately 6 (Sweden, Belgium) to 70 (Turkey). These adjustments likely reflect a combination of prior inventory biases and structural assumptions within the inversion framework. A more detailed discussion of these assumptions and their implications is provided in the concluding remarks.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <label>4</label><title>Concluding remarks</title>
      <p id="d2e4574">We have presented a satellite-driven ensemble data assimilation framework that utilises TROPOMI NO<sub>2</sub> observations to constrain European NO<sub><italic>x</italic></sub> flux estimates and provide an indirect estimate of ffCO<sub>2</sub> emissions for 2021. By implementing a reduced-complexity NO<sub><italic>x</italic></sub> chemistry module within GEOS-Chem, we achieved a computationally efficient pathway for inversion runs that retains critical chemical feedbacks. This approach reduced posterior flux uncertainty by around 40 % (from 5.6 % to 3.3 %).</p>
      <p id="d2e4613">Our results reveal a pronounced amplification of the ffCO<sub>2</sub> seasonal cycle – driven by enhanced emissions in autumn and winter – that correlates strongly with surface temperature variability. While independent validation against in situ measurements confirms improved model performance, the limited sensitivity of OCO-2 comparisons highlights the ongoing challenge of isolating fossil fuel signals from large biogenic backgrounds. Ultimately, this study demonstrates that NO<sub>2</sub>-driven assimilation can provide a first-order constraint on anthropogenic emissions.</p>
      <p id="d2e4634">We acknowledge that our posterior flux adjustments imply substantial increases in national ffCO<sub>2</sub> emissions relative to the prior inventory. For all analysed countries the annual total increases by more than 20 %, with the largest changes reaching up to 91 % in Turkey. These values exceed the stated prior uncertainty and therefore warrant careful interpretation. These results should be interpreted in the context of the limitations of the inversion framework. A key limitation is the use of prescribed, temporally invariant NO<sub><italic>x</italic></sub> : CO<sub>2</sub> emission ratios. In practice, NO<sub><italic>x</italic></sub> : CO<sub>2</sub> emission factors vary across sectors, regions, and seasons due to differences in combustion conditions, fuel composition, and technology <xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx61 bib1.bibx53" id="paren.35"/>. The lack of temporal variability in these emission factors, together with any errors in the assumed prior emission relationship,  may introduce systematic biases in the inferred CO<sub>2</sub> flux adjustments.</p>
      <p id="d2e4695">In addition, non-combustion and biogenic NO<sub><italic>x</italic></sub> sources are held fixed at their prior values. In particular, soil NO<sub><italic>x</italic></sub> emissions represent a highly variable and uncertain source during summer, driven by meteorological and agricultural factors, and remain an active area of research <xref ref-type="bibr" rid="bib1.bibx59 bib1.bibx34" id="paren.36"/>. As a result, uncertainties in these sources cannot be directly corrected and may instead be compensated for through adjustments to combustion emissions. Furthermore, the reliance on a single daily satellite overpass requires prescribed diurnal emission profiles, and the use of a 1 d assimilation window limits the representation of temporal variability in emission uncertainties. These limitations underscore the need for additional constraints, which we propose to address in future work. This study should therefore be viewed as a proof-of-concept inversion approach, and the results should be interpreted as an initial estimate rather than a definitive correction to national emission inventories.</p>
      <p id="d2e4720">A range of complementary approaches have recently emerged for inferring ffO<sub>2</sub> emissions from satellite observations, including direct plume detection methods, machine learning-based frameworks, and observed cross-tracer ratio techniques. Plume detection approaches exploit high-resolution CO<sub>2</sub> imagery to quantify point-source emissions <xref ref-type="bibr" rid="bib1.bibx21 bib1.bibx32 bib1.bibx6" id="paren.37"/>, but are generally limited to large, isolated emitters and favourable atmospheric conditions. Machine learning methods offer computational efficiency and the ability to capture complex nonlinear relationships in atmospheric data <xref ref-type="bibr" rid="bib1.bibx26 bib1.bibx65" id="paren.38"/>, although they typically rely on large, representative training datasets and may lack physical interpretability. Cross-tracer approaches leveraging combined NO<sub>2</sub> and CO<sub>2</sub> analysis, provide a promising framework for improving source attribution and reducing ambiguity in ffCO<sub>2</sub> signals <xref ref-type="bibr" rid="bib1.bibx45 bib1.bibx64" id="paren.39"/>.</p>
      <p id="d2e4778">The approach presented here lies within this emerging class of multi-species top-down methods, building on earlier studies combining NO<sub>2</sub> and CO<sub>2</sub> observations to improve constraints on combustion emissions <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx29 bib1.bibx46" id="paren.40"/>. Assimilating NO<sub>2</sub> observations benefits from the high sensitivity of the short-lived tracer to combustion sources, enabling stronger constraints on the spatial and temporal variability of emissions.  As such, this framework provides a physically consistent pathway for exploiting reactive trace gas observations, and should be viewed as complementary to existing methodologies. At the same time, it highlights the importance of developing integrated, multi-species inversion frameworks to further improve separation of fossil and biogenic flux components.</p>
      <p id="d2e4812">Looking forward, the transition toward high-resolution, multi-species satellite constellations necessitates a shift in how we process reactive gas chemistry within carbon-cycle inversions. The success of our reduced-complexity NO<sub><italic>x</italic></sub> framework suggests that the historical trade-off between chemical accuracy and computational feasibility is less likely to be a barrier to future operational monitoring. As the Copernicus CO2M mission and GOSAT-GW begin to provide co-located CO<sub>2</sub> and NO<sub>2</sub> retrievals at high spatial and temporal resolution, and geostationary platforms such as TEMPO offer enhanced constraints on the diurnal variability of NO<sub>2</sub>, this ensemble-driven approach has the potential to be scaled to provide near-real-time quantification of anthropogenic emissions.</p>
      <p id="d2e4851">A key next step is the development of a fully coupled NO<sub>2</sub>–CO<sub>2</sub> inversion framework, in which both species are assimilated simultaneously, allowing emission ratios to be dynamically constrained and improving the separation of fossil fuel and biogenic flux components. Ultimately, these advancements will move the community closer to a transparent, satellite-based verification system capable of supporting international climate accords and sub-national emission reduction targets.</p>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <label>Appendix A</label><title/>

      <fig id="FA1"><label>Figure A1</label><caption><p id="d2e4886">Evaluation of the offline NO<sub><italic>x</italic></sub> chemistry parameterisation against full GEOS-Chem chemistry for emission perturbations representative of the posterior solution. Panel <bold>(a)</bold> shows the comparison between “true” NO<sub><italic>x</italic></sub> chemical loss rates (from the full chemistry simulation) and those predicted by the offline linear scaling scheme. Panel <bold>(b)</bold> shows the corresponding comparison for the NO<sub>2</sub> : NO<sub><italic>x</italic></sub> partitioning ratio. In both cases, results are shown for a single representative day in each season (January, April, July, and October), using emission perturbations consistent with the posterior increments. High agreement (<inline-formula><mml:math id="M391" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> between 0.94 and 0.99) in panel <bold>(a)</bold> demonstrates that the offline scheme accurately reproduces nonlinear chemical responses under large perturbations, while the near-perfect agreement in panel <bold>(b)</bold> indicates that the NO<sub>2</sub> : NO<sub><italic>x</italic></sub> partitioning remains largely unchanged. Together, these results confirm the validity of the offline chemistry approximation and the assumption of stable partitioning across the range of emission perturbations explored in this study.</p></caption>
        
        <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f13.png"/>

      </fig>

<fig id="FA2"><label>Figure A2</label><caption><p id="d2e4978">Full year NO<sub><italic>x</italic></sub> combustion emissions for 12 high emitting European countries. Prior fluxes are shown in black with grey uncertainty, and posterior fluxes in red with red shading indicating uncertainty (left <inline-formula><mml:math id="M395" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis). Mean daily temperature is also shown in blue (right <inline-formula><mml:math id="M396" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis).</p></caption>
        
        <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f14.png"/>

      </fig>

<table-wrap id="TA1"><label>Table A1</label><caption><p id="d2e5017">Comparison of prior and posterior ffCO<sub>2</sub> emissions relative to EDGAR for selected European countries. Differences are shown in absolute terms (Mt CO<sub>2</sub>) and as percentage changes in agreement relative to EDGAR. Positive values of improvement indicate reduced disagreement.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Country</oasis:entry>
         <oasis:entry colname="col2">Prior</oasis:entry>
         <oasis:entry colname="col3">Post</oasis:entry>
         <oasis:entry colname="col4">Change in</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">diff</oasis:entry>
         <oasis:entry colname="col3">diff</oasis:entry>
         <oasis:entry colname="col4">agreement</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">(Mt)</oasis:entry>
         <oasis:entry colname="col3">(Mt)</oasis:entry>
         <oasis:entry colname="col4">(%)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Germany</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M399" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">31</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">596</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">198 903</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M400" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">24.9</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">United Kingdom</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">40</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">901</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">17 566</oasis:entry>
         <oasis:entry colname="col4">6.9</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">France</oasis:entry>
         <oasis:entry colname="col2">6768</oasis:entry>
         <oasis:entry colname="col3">143 043</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M402" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">43.0</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Italy</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">004</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">136 670</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">36.8</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Spain</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">44</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">224</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">33 554</oasis:entry>
         <oasis:entry colname="col4">4.6</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Netherlands</oasis:entry>
         <oasis:entry colname="col2">20 664</oasis:entry>
         <oasis:entry colname="col3">69 962</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">33.8</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Austria</oasis:entry>
         <oasis:entry colname="col2">39 530</oasis:entry>
         <oasis:entry colname="col3">114 952</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">113.9</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Turkey</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M408" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">203</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">457</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">30 752</oasis:entry>
         <oasis:entry colname="col4">37.5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Belgium</oasis:entry>
         <oasis:entry colname="col2">15 835</oasis:entry>
         <oasis:entry colname="col3">47 367</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M409" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">32.8</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Romania</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M410" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">32</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">478</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M411" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">21</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">246</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">13.9</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Hungary</oasis:entry>
         <oasis:entry colname="col2">5979</oasis:entry>
         <oasis:entry colname="col3">37 543</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M412" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">61.9</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Sweden</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M413" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">20</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">459</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M414" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">14</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">955</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">13.6</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<fig id="FA3"><label>Figure A3</label><caption><p id="d2e5441">Assessment of modelled <inline-formula><mml:math id="M415" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>NO<sub>2</sub> column sensitivity to changes in the restart file. <bold>(a)</bold> Two examples comparing the baseline and perturbed restart files. The June example shows a general decrease in NO<sub><italic>x</italic></sub> concentrations in the perturbed state, with small localised increases in the south, whereas the December example shows widespread increases across most of the region. <bold>(b)</bold> Median and range of TROPOMI precision for each month of 2021. <bold>(c, d)</bold> Column difference, <inline-formula><mml:math id="M418" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>X</mml:mi></mml:mrow></mml:math></inline-formula>NO<sub>2</sub> (molec. cm<sup>−2</sup>) and relative differences (%) between simulations using the two restart files, shown for June <bold>(c)</bold> and December <bold>(d)</bold> over days 1, 2, and 3 of the model run. By day 2 in June, the maximum absolute column differences are below TROPOMI precision. In December, by day 2, the mean absolute difference is below, and the maximum absolute difference is comparable to, TROPOMI precision. These results indicate that restart file deviations primarily affect <inline-formula><mml:math id="M421" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>NO<sub>2</sub> on the first day of the model run, with subsequent days showing changes within or below TROPOMI precision limits.</p></caption>
        
        <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f15.png"/>

      </fig>

<fig id="FA4"><label>Figure A4</label><caption><p id="d2e5544">Scatter plots showing the daily average surface temperature against CO<sub>2</sub> combustion fluxes for 12 high emitting countries. The prior fluxes are shown in blue, and the posterior fluxes in red.</p></caption>
        
        <graphic xlink:href="https://acp.copernicus.org/articles/26/13743/2026/acp-26-13743-2026-f16.png"/>

      </fig>

</app>
  </app-group><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d2e5568">The community-led GEOS-Chem model of atmospheric chemistry and transport is maintained centrally by Harvard University (<uri>https://geoschem.github.io/</uri>, last access: 10 February 2026) and is available on request. The ensemble Kalman filter code is publicly available as PyOSSE (NCEO, <uri>https://www.nceo.ac.uk/data-facilities/datasets-tools//?dataset_type=tools</uri>, last access: 10 February 2026).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d2e5580">CNS and PIP designed the research; IS provided NO<sub><italic>x</italic></sub> and CO<sub>2</sub> flux uncertainties and error correlations; CNS performed the inversion calculations; CNS, LF, and PIP analysed the results; and CNS and PIP wrote the paper with contributions from LF and IS.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d2e5604">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d2e5610">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. The authors bear the ultimate responsibility for providing appropriate place names. Views expressed in the text are those of the authors and do not necessarily reflect the views of the publisher.</p>
  </notes><ack><title>Acknowledgements</title><p id="d2e5618">We gratefully acknowledge the GEOS-Chem community, particularly the team at Harvard University who help to maintain the GEOS-Chem model and the NASA Global Modeling and Assimilation Office (GMAO) that provided the MERRA2 data product.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d2e5623">This research has been supported by the CO2MVS Research on Supplementary Observations (CORSO) project funded by the Horizon Europe programme (grant no. 101082194). Liang Feng and Paul I. Palmer were also funded by the NERC National Centre for Earth Observation (grant no. NE/R016518/1).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d2e5629">This paper was edited by Abhishek Chatterjee and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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