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<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article"><?xmltex \bartext{Research article}?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-22-9017-2022</article-id><title-group><article-title>Observations of gas-phase products from the nitrate-radical-initiated oxidation of four monoterpenes</article-title><alt-title>Nitrate radical-initiated oxidation of four monoterpenes</alt-title>
      </title-group><?xmltex \runningtitle{Nitrate radical-initiated oxidation of four monoterpenes}?><?xmltex \runningauthor{M.~Dam~et~al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Dam</surname><given-names>Michelia</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Draper</surname><given-names>Danielle C.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Marsavin</surname><given-names>Andrey</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Fry</surname><given-names>Juliane L.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1799-5828</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Smith</surname><given-names>James N.</given-names></name>
          <email>jimsmith@uci.edu</email>
        <ext-link>https://orcid.org/0000-0003-4677-8224</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Department of Chemistry, University of California, Irvine, Irvine, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Chemistry Department, Reed College, Portland, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">James N. Smith (jimsmith@uci.edu)</corresp></author-notes><pub-date><day>13</day><month>July</month><year>2022</year></pub-date>
      
      <volume>22</volume>
      <issue>13</issue>
      <fpage>9017</fpage><lpage>9031</lpage>
      <history>
        <date date-type="received"><day>7</day><month>December</month><year>2021</year></date>
           <date date-type="accepted"><day>15</day><month>May</month><year>2022</year></date>
           <date date-type="rev-recd"><day>13</day><month>April</month><year>2022</year></date>
           <date date-type="rev-request"><day>10</day><month>January</month><year>2022</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2022 </copyright-statement>
        <copyright-year>2022</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e125">Chemical ionization mass spectrometry with the nitrate reagent ion (<inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS) was used to investigate the products of the nitrate radical
(<inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) initiated oxidation of four monoterpenes in laboratory chamber experiments. <inline-formula><mml:math id="M3" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Pinene, <inline-formula><mml:math id="M4" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, <inline-formula><mml:math id="M5" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene, and
<inline-formula><mml:math id="M6" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene were studied. The major gas-phase species produced in each system were distinctly different, showing the effect of monoterpene
structure on the oxidation mechanism and further elucidating the contributions of these species to particle formation and growth. By comparing
groupings of products based on the ratios of elements in the general formula <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mtext mathvariant="italic">w</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mtext mathvariant="italic">x</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mtext mathvariant="italic">y</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, the
relative importance of specific mechanistic pathways (fragmentation, termination, and radical rearrangement) can be assessed for each
system. Additionally, the measured time series of the highly oxidized reaction products provide insights into the ratio of relative production and
loss rates of the high-molecular-weight products of the <inline-formula><mml:math id="M8" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system. The measured effective <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios of reaction products were
anticorrelated with new particle formation intensity and number concentration for each system; however, the monomer : dimer ratios of products had a small
positive trend. Gas-phase yields of oxidation products measured by <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS correlated with particle number concentrations for each
monoterpene system, with the exception of <inline-formula><mml:math id="M11" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene, which produced a considerable amount of low-volatility products but no
particles. Species-resolved wall loss was measured with <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS and found to be highly variable among oxidized reaction products in our
stainless steel chamber.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e269">The largest uncertainty in modern climate models is attributed to the radiative effect of aerosols <xref ref-type="bibr" rid="bib1.bibx41" id="paren.1"/>. Their chemical complexity makes it
challenging to predict their formation as well as properties that determine their direct and indirect impacts on climate. A significant fraction of
total global aerosol is secondary organic aerosol (SOA), which originates from the oxidation of gas-phase volatile organic compounds (VOCs) to form
highly oxidized species that may partition into particles or small clusters <xref ref-type="bibr" rid="bib1.bibx24 bib1.bibx16 bib1.bibx8" id="paren.2"/>. Many SOA formation pathways have
been widely studied, such as the ozone (<inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and hydroxyl radical (OH) initiated oxidation of biogenic volatile organic compounds (BVOCs)
<xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx28 bib1.bibx3" id="paren.3"/>. One such system that has been shown to contribute significantly to SOA formation but has not been as
comprehensively studied is nitrate radical (<inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) initiated oxidation of BVOCs <xref ref-type="bibr" rid="bib1.bibx33" id="paren.4"/>. The <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical, produced by the
oxidation of nitrogen dioxide (<inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) with <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, is mainly anthropogenic in origin and is most abundant at night when photolysis does not
occur <xref ref-type="bibr" rid="bib1.bibx11" id="paren.5"/>. BVOCs are emitted naturally by plants and comprise a large fraction of global VOCs, but BVOC concentrations are highest in
forested regions <xref ref-type="bibr" rid="bib1.bibx1" id="paren.6"/>. Therefore, nitrate-radical-initiated oxidation of BVOCs is an SOA-generating system that couples anthropogenic
oxidants with biogenic precursors. This chemistry has also been shown to be important in areas like the southeastern United States <xref ref-type="bibr" rid="bib1.bibx4" id="paren.7"/>
and the Colorado Rocky Mountains <xref ref-type="bibr" rid="bib1.bibx17" id="paren.8"/>.</p>
      <p id="d1e353">Monoterpenes (MTs), unsaturated <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds, comprise a large fraction of global BVOCs and have been shown to have a high SOA
production potential from nitrate-radical-initiated oxidation <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx39 bib1.bibx4" id="paren.9"/>. However, the large range in SOA yield in
laboratory studies of the most abundant MTs, <inline-formula><mml:math id="M19" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene (0 %–16 %), <inline-formula><mml:math id="M20" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene (27 %–104 %), and <inline-formula><mml:math id="M21" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene
(68 %–77 %) <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx18 bib1.bibx9 bib1.bibx19" id="paren.10"/>, indicates that the oxidation mechanisms of these MTs have key differences. As
<inline-formula><mml:math id="M22" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene is often used as the representative MT in regional and global models, these oxidation mechanisms need further investigation to improve
model predictions of SOA yield from MT <inline-formula><mml:math id="M23" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> systems and the concomitant impacts on climate.</p>
      <p id="d1e425">Recently, computational and experimental studies have shed light on the initial steps of nitrate-radical-initiated oxidation of <inline-formula><mml:math id="M25" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene,
<inline-formula><mml:math id="M26" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, and <inline-formula><mml:math id="M27" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene – all of which are bicyclic monoterpenes with a single double bond <xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx15" id="paren.11"/>. These studies
concluded that, following <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition onto the carbon–carbon double bond and rapid <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition to the alkyl radical, first-generation
peroxy radical isomerization reactions are too slow to contribute to overall oxidation product distributions and instead rapidly reduce to alkoxy
groups through bimolecular reactions with <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, or <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the nighttime atmosphere. In the oxygen-rich atmosphere
(<inline-formula><mml:math id="M33" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration <inline-formula><mml:math id="M34" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), <inline-formula><mml:math id="M37" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition to nitroxy-alkyl radical compounds is expected to be much faster than
radical decomposition <xref ref-type="bibr" rid="bib1.bibx5" id="paren.12"/>. First-generation alkoxy scission plays an important role in determining the potential for further radical
propagation for these monoterpenes and may help explain why the <inline-formula><mml:math id="M38" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene <inline-formula><mml:math id="M39" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M40" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> system produces much lower SOA yields than
<inline-formula><mml:math id="M41" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene <inline-formula><mml:math id="M42" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e615">First-generation alkoxy scission is affected by the position of the endocyclic or exocyclic double bond with respect to the secondary ring in these
bicyclic monoterpenes <xref ref-type="bibr" rid="bib1.bibx42" id="paren.13"/>. The most favorable, lowest-energy, first-generation alkoxy scission pathway for the
<inline-formula><mml:math id="M44" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene <inline-formula><mml:math id="M45" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> system leads to the formation of pinonaldehyde – a closed-shell species that is not very highly oxidized and, thus, is not
expected to contribute to the formation of new SOA. This contrasts with the <inline-formula><mml:math id="M47" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene and <inline-formula><mml:math id="M48" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene systems, which form alkyl radicals that
allow for further radical propagation, oxidation, and internal isomerization. These processes can lead to the formation of highly oxidized gas-phase
products that can readily partition into small particles. Additionally, other unimolecular processes have been shown to be competitive on the timescale of these reactions, including internal hydrogen-shift isomerization and radical rearrangement by opening the secondary ring
<xref ref-type="bibr" rid="bib1.bibx43" id="paren.14"/>. The size of the secondary ring strongly influences the energy barrier for ring opening: four-membered rings (<inline-formula><mml:math id="M49" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene,
<inline-formula><mml:math id="M50" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene) are unlikely to open, but strained three-membered rings (<inline-formula><mml:math id="M51" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene) are much more susceptible to ring opening
<xref ref-type="bibr" rid="bib1.bibx27" id="paren.15"/>. Understanding the prevalence of these early unimolecular processes is important in determining the potential for further radical
propagation and oxidation.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e691">Scheme of the proposed <inline-formula><mml:math id="M52" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene <inline-formula><mml:math id="M53" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> oxidation mechanism. Orange arrows indicate the formation of thujenaldehyde – a volatile product that is not expected to contribute to new particle formation. The downward arrow indicates a potential alkyl radical rearrangement that leads to a product that can undergo additional oxidation to form highly oxygenated molecules (HOMs).</p></caption>
        <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/9017/2022/acp-22-9017-2022-f01.png"/>

      </fig>

      <p id="d1e725">For this experimental study, we investigate nitrate-radical-initiated oxidation of four monoterpenes, <inline-formula><mml:math id="M55" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, <inline-formula><mml:math id="M56" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, <inline-formula><mml:math id="M57" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene,
and <inline-formula><mml:math id="M58" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene, in a reaction chamber. The first three monoterpenes are abundant in the atmosphere <xref ref-type="bibr" rid="bib1.bibx39" id="paren.16"/>, and their oxidation
mechanisms have been previously studied in laboratory experiments and theoretical computational studies. <inline-formula><mml:math id="M59" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Thujene, a key component of
frankincense oil, is less naturally abundant, but studying the <inline-formula><mml:math id="M60" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system presents a unique opportunity to assess early unimolecular
processes because of its structure. <inline-formula><mml:math id="M61" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Thujene has a three-membered secondary ring, similar to <inline-formula><mml:math id="M62" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene, with an adjacent double bond
position, similar to <inline-formula><mml:math id="M63" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene. Following <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition to the double bond, oxidation of the alkyl radical to a peroxy radical and
subsequent reduction to an alkoxy radical through a bimolecular reaction is expected to occur. The first-generation alkoxy scission pathways available
for <inline-formula><mml:math id="M65" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene mirror those of <inline-formula><mml:math id="M66" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). The figure shows that cleaving the C1–C2 bond, losing the top methyl group, or the left-side
C2–C7 bond, leading to an unstable alkyl radical on a three-membered ring, would be unfavorable. Cleaving the right-side C2–C3 bond generates an alkyl
radical on the nitrate-substituted carbon, which would lead to rapid radical termination with loss of <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, forming thujenaldehyde. If,
instead, <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition onto the double bond was followed by radical rearrangement by opening the three-membered ring (C5–C7 cleavage) and
subsequent tertiary alkyl radical formation, radical propagation pathways become available and can potentially lead to further oxidation and
condensable species <xref ref-type="bibr" rid="bib1.bibx42" id="paren.17"/>. By studying the oxidation of <inline-formula><mml:math id="M69" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene in addition to the previously studied MT systems, we can
assess the prevalence of this ring-opening reaction in the early mechanism.</p>
      <p id="d1e856">This study is an observation of detailed compositional differences of observed gas-phase oxidation products as they relate to the current
understanding of oxidation mechanisms using high-resolution time-of-flight chemical ionization mass spectrometry (HR-TOF-CIMS) with the <inline-formula><mml:math id="M70" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
reagent ion. <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS has been used to measure the composition of oxidized organics in laboratory studies
<xref ref-type="bibr" rid="bib1.bibx6 bib1.bibx37 bib1.bibx21 bib1.bibx32 bib1.bibx38" id="paren.18"/> and in ambient air <xref ref-type="bibr" rid="bib1.bibx16" id="paren.19"/>, but it has also been used specifically to probe
nitrogen-containing oxidized monoterpenes <xref ref-type="bibr" rid="bib1.bibx15" id="paren.20"/>. The <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> reagent ion has been shown to cluster with highly oxidized compounds
that contain at least two hydrogen bond donor sites. Therefore, we do not expect to be able to measure highly volatile aldehyde products
(thujenaldehyde/pinonaldehyde) with <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS, but we can probe the formation of highly oxidized products and compare the differences in
composition among the four MT systems. Nitrate-radical-initiated oxidation of <inline-formula><mml:math id="M74" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene has not been previously studied; thus, the results
of this particular system are unique observations. Iodide (<inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">I</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>) has been used extensively in previous studies as a CIMS reagent ion,
specifically to measure oxidized organics and inorganic nitrogen species <xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx2 bib1.bibx29 bib1.bibx31" id="paren.21"/>. The use of both
<inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">I</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> reagent ions could provide additional mechanistic information and is planned for future studies.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Experimental methods</title>
      <p id="d1e982">We ran chamber experiments using a darkened 560 <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi></mml:mrow></mml:math></inline-formula> stainless steel chamber in flow-through mode with a total flow of
17 <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Previously, we confirmed that operating in this manner resulted in conditions in which the chamber was well mixed after
<inline-formula><mml:math id="M80" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100 <inline-formula><mml:math id="M81" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula> with a residence time of <inline-formula><mml:math id="M82" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 33 <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> (see Sect. S6 in the Supplement). A schematic of our experimental setup is shown in Fig. <xref ref-type="fig" rid="Ch1.F2"/>. All experiments were performed under dry conditions. We
generated <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical by oxidizing <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> inside the chamber and allowing the oxidants to reach steady state
(<inline-formula><mml:math id="M87" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>) before adding MT. <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was generated by UV photolysis of air scrubbed of <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">x</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M91" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M92" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M93" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and VOCs by a zero-air generator (Aadco Instruments, model 737-13) at 1.5 <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was
introduced directly from a commercially prepared cylinder (Praxair, Inc., 2.5 <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula> in purified air) at 1.5 <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Before the addition
of MT, the mixing ratios of oxidants and nitrogen compounds in the chamber were as follows: [<inline-formula><mml:math id="M98" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M99" display="inline"><mml:mo>≈</mml:mo></mml:math></inline-formula> 240 <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>, [<inline-formula><mml:math id="M101" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>]
<inline-formula><mml:math id="M102" display="inline"><mml:mo>≈</mml:mo></mml:math></inline-formula> 240 <inline-formula><mml:math id="M103" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>, [<inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M105" display="inline"><mml:mo>≈</mml:mo></mml:math></inline-formula> 0.2 <inline-formula><mml:math id="M106" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>, and [<inline-formula><mml:math id="M107" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M108" display="inline"><mml:mo>≈</mml:mo></mml:math></inline-formula> 25 <inline-formula><mml:math id="M109" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M110" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was measured using an
absorption gas analyzer (2B Technologies, model 106-L). <inline-formula><mml:math id="M111" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was measured with both an absorption gas analyzer (2B Technologies, model 405nm)
and with a homebuilt thermal-dissociation–cavity ring-down spectrometer (TD-CRDS; <xref ref-type="bibr" rid="bib1.bibx23" id="altparen.22"/>). <inline-formula><mml:math id="M112" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical and <inline-formula><mml:math id="M113" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
concentrations were modeled using the kinetic box model, KinSim <xref ref-type="bibr" rid="bib1.bibx35" id="paren.23"/>, which was run on the Igor Pro computing platform (WaveMetrics,
Inc., version 7). <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was also measured by <inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">I</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> CIMS and the TD-CRDS, but those measurements were performed primarily to estimate wall
losses and were, thus, not calibrated. We introduced MT into the chamber from gas cylinders that were prepared by injecting liquid MT (Sect. S2 in the
Supplement) into the cylinders and then pressurizing with ultrapure nitrogen. The mixing ratio
inside the cylinders (11–20 <inline-formula><mml:math id="M116" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppm</mml:mi></mml:mrow></mml:math></inline-formula>) was estimated using the mass of injected liquid and confirmed using a gas chromatograph with a flame-ionization detector and a homebuilt cryogenic preconcentrator (GC-FID). The small MT flow (25 cm<inline-formula><mml:math id="M117" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> min<inline-formula><mml:math id="M118" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) was fed into the center of a larger zero-air flow (1 <inline-formula><mml:math id="M119" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) with tee fitting to more effectively carry it into the chamber. Monoterpene concentrations (<inline-formula><mml:math id="M120" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 41 <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>)
inside the chamber were estimated from the flow dilution; the concentrations were confirmed using GC-FID and modeled with KinSim. The remainder
of the flow, 12 <inline-formula><mml:math id="M122" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, was zero air that was introduced into the chamber with a Teflon “shower head” consisting of a capped tube with
holes drilled perpendicularly along the length of the tube to facilitate mixing in the chamber. We ran experiments under continuous flow and measured
precursor and product concentrations for 1–2 <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> until the gas-phase products reached steady state, as detected with <inline-formula><mml:math id="M124" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS. The
sample lines extended <inline-formula><mml:math id="M125" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 <inline-formula><mml:math id="M126" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula> into the chamber in order to minimize the possibility of sampling in a gradient caused by loss of
low-volatility species to the chamber walls.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e1506">Experimental setup for chamber studies. Blue lines indicate flow going into the chamber, and orange lines indicate where flow is being removed.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/9017/2022/acp-22-9017-2022-f02.png"/>

        </fig>

      <p id="d1e1515">The TD-CRDS was used to measure nitrogen-containing species (nitric acid, alkyl nitrates – ANs, peroxy nitrates – PNs, and <inline-formula><mml:math id="M127" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) in both the gas and
particle phases <xref ref-type="bibr" rid="bib1.bibx23" id="paren.24"/>. The TD-CRDS measured total ANs <inline-formula><mml:math id="M128" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> PNs during this experiment, and the <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> channel was used to parameterize
the KinSim model. Additionally, a scanning mobility particle sizer (SMPS), which consisted of a differential mobility analyzer (TSI, Inc., model
3081), a condensation particle counter (CPC, TSI, Inc., model 3020), and a homebuilt flow and voltage controller, was used to measure the particle
number size distributions. We probed the formation of low-volatility oxidation products using <inline-formula><mml:math id="M130" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS, consisting of a high-resolution
time-of-flight mass spectrometer (Tofwerk AG, model LTOF) operating in V mode. We used a homebuilt transverse ionization CIMS inlet, in which the
sample flow is perpendicular to the flow of the reagent ions into the entrance orifice of the mass spectrometer <xref ref-type="bibr" rid="bib1.bibx30" id="paren.25"/>. The inlet minimizes the wall
losses of sampled gases as well as clustering with neutral compounds such as water vapor in the ion source, with an average ionization reaction time of
<inline-formula><mml:math id="M131" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 80 <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ms</mml:mi></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> reagent ion was generated by flowing ultrahigh-purity <inline-formula><mml:math id="M134" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> gas over the headspace of a small glass vial
filled with nitric acid (<inline-formula><mml:math id="M135" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HNO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). The reagent ion flow (8 cm<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> min<inline-formula><mml:math id="M137" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) was diluted with a larger flow (1 <inline-formula><mml:math id="M138" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) of pure
<inline-formula><mml:math id="M139" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Peaks in mass spectra were fitted and assigned using the Tofware software (Aerodyne Research, version 7). The reagent ion monomer
(<inline-formula><mml:math id="M140" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>), dimer (<inline-formula><mml:math id="M141" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HNO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>), and trimer (<inline-formula><mml:math id="M142" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">HNO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msubsup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) were used as calibration peaks for the low mass range. High-mass
calibrations were determined from the highest intensity single peaks in the monomer and dimer region clustered with the <inline-formula><mml:math id="M143" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> ion, and reasonable
formulas were predicted from the base MT formula (<inline-formula><mml:math id="M144" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). The total gas-phase product concentration was estimated using the sum of the
abundance of all species detected by <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS integrated over the duration of the experiment. The integrated ion signal was converted to
concentration using a calibration factor (6 <inline-formula><mml:math id="M146" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M147" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M148" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">molec</mml:mi><mml:mo>.</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). This
calibration factor was determined experimentally using, as a proxy, the reaction of sulfuric acid (<inline-formula><mml:math id="M149" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> ion, which is
estimated to be at the collision limit, as detailed by <xref ref-type="bibr" rid="bib1.bibx26" id="text.26"/>. A calculation is shown in Sect. S4 in the Supplement. We recognize that this calibration factor result is likely an upper limit for the actual concentration of organic
nitrate compounds.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e1842">KinSim simulation of the <inline-formula><mml:math id="M151" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene <inline-formula><mml:math id="M152" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> experiment. Measured traces are shown with dashed lines, and modeled results are shown with solid lines. Additional modeling of the other MT systems are shown in Fig. S1 in the Supplement.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/9017/2022/acp-22-9017-2022-f03.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Kinetic modeling</title>
      <p id="d1e1884">KinSim was used to support our experiments by providing approximate concentrations of unmeasured oxidant species (<inline-formula><mml:math id="M154" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>/<inline-formula><mml:math id="M155" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and
helping assess the dominant oxidant chemistry (<inline-formula><mml:math id="M156" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vs. <inline-formula><mml:math id="M157" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) in the chamber. The rate constants for all reactions considered in the model
are listed in Sect. S1 in the Supplement. The chamber is assumed to be well mixed in the model, and
dilution flow is also represented. Experimentally measured time series of oxidants agree well with the modeled concentrations
(Fig. <xref ref-type="fig" rid="Ch1.F3"/>). Experimentally measured wall loss of <inline-formula><mml:math id="M158" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (1.25 <inline-formula><mml:math id="M159" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M160" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M161" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) was also considered in the
model. This value was experimentally determined by stopping the flow of oxidants to the chamber and making up the lost flow with additional zero air,
thereby “turning off” the chemistry, and using <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">I</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> CIMS to measure the decay of the <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub><mml:msup><mml:mi mathvariant="normal">I</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> cluster (Sect. S6 in the
Supplement). The raw <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub><mml:msup><mml:mi mathvariant="normal">I</mml:mi><mml:mo>-</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> decay was exponentially fitted to determine the wall loss
rate. <xref ref-type="bibr" rid="bib1.bibx14" id="text.27"/> found the <inline-formula><mml:math id="M165" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> wall loss rate of this chamber to be 9.2 <inline-formula><mml:math id="M166" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M167" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M168" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which is somewhat lower, but the
chamber was coated with paraffin wax and was operated under static flow conditions for their measurements. Even though excess <inline-formula><mml:math id="M169" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> remains in the
chamber from the generation of the <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, the model predicts that more than 98 % of oxidation products in all MT systems should be initiated
by <inline-formula><mml:math id="M171" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. This is expected, as the rate constant for the MT <inline-formula><mml:math id="M172" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M173" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical reaction is several orders of magnitude faster than for
MT <inline-formula><mml:math id="M174" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M175" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. The rate constants of <inline-formula><mml:math id="M176" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M177" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> oxidation for <inline-formula><mml:math id="M178" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene are unknown and, therefore, cannot be modeled in
the same way; hence, we estimated a “worst-case scenario” by taking the slowest <inline-formula><mml:math id="M179" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M180" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> MT rate constant (<inline-formula><mml:math id="M181" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene,
2.5 <inline-formula><mml:math id="M182" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M183" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math id="M184" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molec.<inline-formula><mml:math id="M185" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M186" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, from <xref ref-type="bibr" rid="bib1.bibx33" id="altparen.28"/>) and the fastest <inline-formula><mml:math id="M187" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M188" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> MT rate constant (<inline-formula><mml:math id="M189" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, 6.0 <inline-formula><mml:math id="M190" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M191" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math id="M192" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> molec.<inline-formula><mml:math id="M193" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M194" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, from
<xref ref-type="bibr" rid="bib1.bibx3" id="altparen.29"/>). This resulted in a ratio of <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow><mml:mo>:</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula> products of 0.1.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Oxidation product quantification</title>
      <p id="d1e2392">Mixing ratios of reaction products calculated from integrated concentrations were on the order of 0.1–0.001 <inline-formula><mml:math id="M196" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppt</mml:mi></mml:mrow></mml:math></inline-formula>. Percent yield is reported
for each MT system and shows the following: <inline-formula><mml:math id="M197" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene (2.5 <inline-formula><mml:math id="M198" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M199" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) <inline-formula><mml:math id="M200" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M201" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene (1.0 <inline-formula><mml:math id="M202" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M203" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) <inline-formula><mml:math id="M204" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M205" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene
(5.0 <inline-formula><mml:math id="M206" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M207" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) <inline-formula><mml:math id="M208" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M209" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene (9.8 <inline-formula><mml:math id="M210" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M211" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). Substantial wall losses were found for <inline-formula><mml:math id="M212" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS-measured
species, with high variability observed among individual species and no clear trend with <inline-formula><mml:math id="M213" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> or molecule weight (see Sect. S6 in
the Supplement). Therefore, individual wall loss corrections were applied for all species before
calculating yield from <inline-formula><mml:math id="M214" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS measurements. Explicit wall effects were only measured for the <inline-formula><mml:math id="M215" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system; therefore, for the other
MTs, average wall loss rates for monomers (5.5 <inline-formula><mml:math id="M216" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M217" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M218" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and dimers (3.4 <inline-formula><mml:math id="M219" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M220" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M221" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) were
calculated using observations from the <inline-formula><mml:math id="M222" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system experiment and are, thus, subject to greater uncertainty. In contrast, wall losses of the
total ANs+PNs measured by TD-CRDS were observed to be negligible relative to the dilution timescale of the chamber, suggesting that the majority of
this bulk organic nitrate signal is due to higher-volatility species not measured by the <inline-formula><mml:math id="M223" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS, not substantially lost to the walls, and
likely not contributing substantially to SOA formation. The trend in observed molar yields of total ANs+PNs is consistent with previous measurements
(<inline-formula><mml:math id="M224" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene <inline-formula><mml:math id="M225" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M226" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene <inline-formula><mml:math id="M227" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M228" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene), but the magnitudes (20 %, 10 %, and 5 %, respectively) are substantially lower than previous
studies. This is puzzling, but it may be due to the TD-CRDS measurement measuring only the subset of high-volatility nitrates in these experiments, while
the lower-volatility nitrates have rapid wall losses that prevent the TD-CRDS from measuring them. We note that the CIMS is essentially inlet-less in
comparison with a 2 <inline-formula><mml:math id="M229" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> inlet line for the TD-CRDS in these experiments.</p>
      <p id="d1e2707">The <inline-formula><mml:math id="M230" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system produced more highly oxidized products than the <inline-formula><mml:math id="M231" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene system; especially significant is the amount of highly
oxidized dimers that were formed from <inline-formula><mml:math id="M232" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene. The <inline-formula><mml:math id="M233" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system generated the most particles, followed by the <inline-formula><mml:math id="M234" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene
system, and both the <inline-formula><mml:math id="M235" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M236" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene systems did not generate any particles (Fig. S2 in the Supplement). Observed particle number trends agree with gas-phase product trends except for the <inline-formula><mml:math id="M237" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system, in which
highly oxidized products formed but did not nucleate and/or grow effectively to form measurable particles.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e2769">Stacked mass spectra from each MT <inline-formula><mml:math id="M238" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M239" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> system. The <inline-formula><mml:math id="M240" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> reagent ion is not included in assigned formula. The left axes are raw ion counts and are not normalized to the reagent ion.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/9017/2022/acp-22-9017-2022-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Comparison of oxidation product composition</title>
<sec id="Ch1.S3.SS2.SSS1">
  <label>3.2.1</label><title>Definition of categories for elemental analysis</title>
      <p id="d1e2824">The experiment-averaged mass spectra for each MT system showed very different peak distributions (Fig. <xref ref-type="fig" rid="Ch1.F4"/>). Here, we explore the relative
ratios of experiment-averaged ion abundance from categories of products. For comparison, we normalized the integrated area of each peak by the total
integrated area of all organic peaks in the mass spectrum. The general formula <inline-formula><mml:math id="M241" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mtext mathvariant="italic">w</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mtext mathvariant="italic">x</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mtext mathvariant="italic">y</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was
used to create categories of reaction products that correspond to specific predicted mechanistic pathways that are summarized in
Table <xref ref-type="table" rid="Ch1.T1"/>, with the representative mechanisms for each pathway shown in Fig. <xref ref-type="fig" rid="Ch1.F5"/>. The carbon number provides an indication of
fragmentation caused by C–C bond cleavage for any carbon number that is not equal to 10 (for monomers) or 20 (for dimer formation from peroxy or
alkoxy radical additions, e.g., <inline-formula><mml:math id="M242" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M243" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M244" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). The hydrogen number informs us about the terminal functional group and the associated
bimolecular reactions leading to them. The nitrogen number can indicate secondary double bond generation or <inline-formula><mml:math id="M245" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M246" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M247" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> chemistry from
residual <inline-formula><mml:math id="M248" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the chamber. Structure–activity relationships (SARs) and rate constants were found in the literature for relevant pathways
<xref ref-type="bibr" rid="bib1.bibx42 bib1.bibx43 bib1.bibx34 bib1.bibx27 bib1.bibx15 bib1.bibx22 bib1.bibx13" id="paren.30"/>, but proposed mechanisms were not explicitly modeled for
this study. The oxygen number and <inline-formula><mml:math id="M249" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio provide insights into how much autoxidation chemistry occurred, increasing the <inline-formula><mml:math id="M250" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio of the
products. While we cannot completely explain the origin of every observed compound, the observed differences provide valuable information regarding
the most important pathways that lead to these low-volatility products. The ratio distributions for all of the MT systems are summarized in
Fig. <xref ref-type="fig" rid="Ch1.F6"/>. Complete peak lists for each MT system can be found in Sect. S8 in the Supplement. Note that the <inline-formula><mml:math id="M251" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system ratios are the average of an 8 <inline-formula><mml:math id="M252" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> experiment and a 70 <inline-formula><mml:math id="M253" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> experiment
(39 <inline-formula><mml:math id="M254" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula> average). The full comparison of results from both experiments can be found in Sect. S7 in the Supplement.</p>

<?xmltex \floatpos{p}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e2994">Summary table of reaction product formulas grouped by the mechanistic pathways shown in Fig. <xref ref-type="fig" rid="Ch1.F5"/>. Group A details the formation of <inline-formula><mml:math id="M255" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mtext mathvariant="italic">X</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mtext mathvariant="italic">Z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> reaction products, group B details the formation of <inline-formula><mml:math id="M256" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mtext mathvariant="italic">X</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mtext mathvariant="italic">Z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> products, group C details the formation of <inline-formula><mml:math id="M257" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mtext mathvariant="italic">X</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mtext mathvariant="italic">Z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> products, and group D details various pathways for dimer formation.</p></caption>
  <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/9017/2022/acp-22-9017-2022-t01.png"/>
</table-wrap>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e3084">Scheme of the mechanistic pathways listed in Table <xref ref-type="table" rid="Ch1.T1"/>. Potential bimolecular reaction partners in a nighttime atmosphere (<inline-formula><mml:math id="M258" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M259" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M260" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) are abbreviated as “X”. Panel <bold>(a)</bold> shows <inline-formula><mml:math id="M261" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene oxidation as an example of how the hydrogen number can indicate radical termination. Panel <bold>(b)</bold> shows a <inline-formula><mml:math id="M262" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fragment formation pathway available to the <inline-formula><mml:math id="M263" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene and <inline-formula><mml:math id="M264" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene systems. Panel <bold>(c)</bold> shows two potential <inline-formula><mml:math id="M265" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fragment formation pathways available to the <inline-formula><mml:math id="M266" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M267" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene systems.</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/9017/2022/acp-22-9017-2022-f05.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS2.SSS2">
  <label>3.2.2</label><title>Categorized monomer composition and mechanistic implications</title>
      <p id="d1e3204">The relative abundance of dimers compared with monomers (Fig. <xref ref-type="fig" rid="Ch1.F6"/>) correlates with observed particle formation (Sect. S3 in the
Supplement)  for each MT system, with the exception of <inline-formula><mml:math id="M268" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene, for which we observed
substantial dimer formation without significant particle formation. We predict that the first alkyl radical formed from <inline-formula><mml:math id="M269" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition onto the
<inline-formula><mml:math id="M270" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene double bond can potentially rearrange to form a new double bond while opening the strained three-membered ring, forming a
six-membered ring and new tertiary alkyl radical (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). That structure can then undergo further oxidation to form highly oxygenated,
lower-volatility compounds, including dimers. Our observations of highly oxygenated products for <inline-formula><mml:math id="M271" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene shows that, under these experimental
conditions, there is an additional pathway for the first-generation alkoxy scission (Fig. <xref ref-type="fig" rid="Ch1.F1"/>) that is competitive with the formation of
thujenaldehyde.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e3248">Ratios of reaction products separated into categories for each MT system. Each category for each MT system adds up to 100 %. The color axis indicates the magnitude of the total percent yield, which can be compared across the MT systems. <inline-formula><mml:math id="M272" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-Pinene percentages are averaged from high-mixing-ratio (70 <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>) and low-mixing-ratio (8 <inline-formula><mml:math id="M274" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>) experiments, but the rest of the MT systems are at the same mixing ratio (41 <inline-formula><mml:math id="M275" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>).</p></caption>
            <?xmltex \igopts{width=150.799606pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/9017/2022/acp-22-9017-2022-f06.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS2.SSSx1" specific-use="unnumbered">
  <title>Carbon number</title>
      <p id="d1e3294">Figure <xref ref-type="fig" rid="Ch1.F6"/> summarizes the monomer carbon number distributions, which provide insights into fragmentation pathways. Detailed schemes for each
MT system are shown in Sect. S5 in the Supplement. In general, alkoxy decomposition pathways
(<inline-formula><mml:math id="M276" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M277" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) are predicted to be competitive with <inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow></mml:math></inline-formula> migration when leaving groups become highly substituted
<xref ref-type="bibr" rid="bib1.bibx34 bib1.bibx43" id="paren.31"/>. For three of the MT systems studied (<inline-formula><mml:math id="M279" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene, <inline-formula><mml:math id="M280" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, and <inline-formula><mml:math id="M281" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene), terminal sites that are
available in the <inline-formula><mml:math id="M282" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> position to alkoxy radicals become oxidized and lead to fast alkoxy decomposition (Fig. <xref ref-type="fig" rid="Ch1.F5"/>b). For the
<inline-formula><mml:math id="M283" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene system, however, such a terminal site is not available. Another possible pathway for fragmentation is alkyl radical rearrangement that
leads to ring opening. For <inline-formula><mml:math id="M284" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds, radical rearrangement creates new alkyl radicals at tertiary isopropyl sites
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>c). Oxidation of the alkyl radical site to an <inline-formula><mml:math id="M285" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical and bimolecular reaction to form an RO radical allows alkoxy
decomposition to occur, generating a new alkyl radical <xref ref-type="bibr" rid="bib1.bibx27" id="paren.32"/>. For <inline-formula><mml:math id="M286" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds, ring opening and <inline-formula><mml:math id="M287" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical addition
creates a new alkyl radical in the <inline-formula><mml:math id="M288" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> position to a <inline-formula><mml:math id="M289" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">ONO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> group. If the alkyl radical is again oxidized (forming <inline-formula><mml:math id="M290" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and
decomposed (forming RO), alkoxy scission with an <inline-formula><mml:math id="M291" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ONO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> group on the <inline-formula><mml:math id="M292" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> carbon would not have a smaller energy barrier than a site with OH
or OOH <inline-formula><mml:math id="M293" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> substitution, but this barrier would still be smaller than an alkyl-substituted site.</p>
      <p id="d1e3480">Although <xref ref-type="bibr" rid="bib1.bibx15" id="text.33"/> observed a substantial <inline-formula><mml:math id="M294" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> contribution for a <inline-formula><mml:math id="M295" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene <inline-formula><mml:math id="M296" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> experiment with the same
instrument, we observed a negligible <inline-formula><mml:math id="M298" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> contribution. The conditions of the two experiments were different in that the ratio of MT to oxidant
was lower in our experiment (0.004 vs. 0.012) and the residence time for our experiment was longer (33 <inline-formula><mml:math id="M299" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> vs. 23 <inline-formula><mml:math id="M300" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula>). These
differences can lead to different chemistry inside the chamber that could result in different observed reaction product distributions. We plan future
studies to further explore the source of these differences. A large <inline-formula><mml:math id="M301" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> contribution was observed for both the <inline-formula><mml:math id="M302" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and
<inline-formula><mml:math id="M303" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene systems. One possible formation mechanism is shown by the R1 arrow in Fig. <xref ref-type="fig" rid="Ch1.F5"/>c, in which the initial alkyl radical formed
from <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition rearranges to open the four-membered ring (C7–C8 cleavage), forming a new tertiary alkyl radical. This early alkyl radical
rearrangement was proposed by <xref ref-type="bibr" rid="bib1.bibx9" id="text.34"/> for the <inline-formula><mml:math id="M305" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene <inline-formula><mml:math id="M306" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M307" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> system. However, <inline-formula><mml:math id="M308" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition to the initial alkyl
radical is expected to be fast under our experimental conditions and in the ambient atmosphere <xref ref-type="bibr" rid="bib1.bibx5 bib1.bibx27" id="paren.35"/>, so we expect this alkyl
radical rearrangement not to be significant. R2 in Fig. <xref ref-type="fig" rid="Ch1.F5"/> shows an alkyl radical rearrangement that opens the four-membered ring and
generates a new tertiary alkyl radical (C7–C8 cleavage). This specific ring-opening reaction is not currently supported by quantum chemical modeling,
so we cannot currently comment on its competitiveness. Another possibility is that this <inline-formula><mml:math id="M309" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compound comes from the first-generation alkoxy
scission of the C2–C7 bond (Fig. <xref ref-type="fig" rid="Ch1.F5"/>c). While predicted to be a minor pathway for <inline-formula><mml:math id="M310" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, this C2–C7 scission is expected to be
equally, if not more, competitive with the other two first-generation alkoxy scission (C2–C1 and C2–C3) for <inline-formula><mml:math id="M311" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene <xref ref-type="bibr" rid="bib1.bibx12" id="paren.36"/>. This
branching ratio may be somewhat reflected in the relative yields observed from the <inline-formula><mml:math id="M312" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS. The <inline-formula><mml:math id="M313" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> product yield from the
<inline-formula><mml:math id="M314" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene system is roughly half that of the <inline-formula><mml:math id="M315" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system. This early left-side C2–C7 scission makes a secondary radical on the
four-membered ring, which is less stable than an acyclic analog because of ring strain <xref ref-type="bibr" rid="bib1.bibx27" id="paren.37"/>. R3 in Fig. <xref ref-type="fig" rid="Ch1.F5"/>c shows the
proposed mechanism for this newly generated compound. In abundant <inline-formula><mml:math id="M316" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, this alkyl radical will be oxidized to an <inline-formula><mml:math id="M317" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical. Because
this new <inline-formula><mml:math id="M318" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical is confined by the rigid structure of the ring, autoxidation could be slow, while in the presence of other radical
species (<inline-formula><mml:math id="M319" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M320" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), bimolecular decomposition from a peroxy radical (<inline-formula><mml:math id="M321" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) to an alkoxy radical (RO) could be faster. Few
cyclic <inline-formula><mml:math id="M322" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> H migration computational studies exist for relevant systems <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx44 bib1.bibx15" id="paren.38"/>, but bimolecular rate constants
with <inline-formula><mml:math id="M323" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M324" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M325" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> have recently become better defined for <inline-formula><mml:math id="M326" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radicals <xref ref-type="bibr" rid="bib1.bibx22" id="paren.39"/>. Once the RO radical is
formed, it is possible that decomposition of a C–C bond (thus opening the strained ring and leading to formation of a ketone and a tertiary alkyl
radical) could be fast, with a predicted energy barrier of 0.6 <inline-formula><mml:math id="M327" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">kcal</mml:mi></mml:mrow></mml:math></inline-formula> mol<inline-formula><mml:math id="M328" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> from SARs
<xref ref-type="bibr" rid="bib1.bibx42 bib1.bibx43 bib1.bibx34" id="paren.40"/>. In this position, the tertiary radical resembles the structure predicted for <inline-formula><mml:math id="M329" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene in
<xref ref-type="bibr" rid="bib1.bibx27" id="text.41"/> and could lead to the loss of the isopropyl group from C5–C8 cleavage and formation of a <inline-formula><mml:math id="M330" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fragment. This pathway is only
available for the <inline-formula><mml:math id="M331" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M332" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene systems, and a significant contribution from <inline-formula><mml:math id="M333" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds is only observed from these two
systems.</p>
      <p id="d1e3908">Instead of abundant <inline-formula><mml:math id="M334" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds, we observe a large contribution from <inline-formula><mml:math id="M335" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds for the <inline-formula><mml:math id="M336" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system and smaller
<inline-formula><mml:math id="M337" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> signal for the rest of the MT systems. A possible pathway for <inline-formula><mml:math id="M338" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> formation is through the generation of a secondary double bond and
subsequent <inline-formula><mml:math id="M339" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> addition (Fig. <xref ref-type="fig" rid="Ch1.F5"/>b). The <inline-formula><mml:math id="M340" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">ONO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> leaving group could quickly fragment into <inline-formula><mml:math id="M341" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M342" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx34 bib1.bibx43" id="paren.42"/> but is assumed to be more stable than a <inline-formula><mml:math id="M343" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical formed from any other terminal site on the molecule in
this case. The most abundant <inline-formula><mml:math id="M344" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compound for the <inline-formula><mml:math id="M345" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system contains two nitrogen atoms (<inline-formula><mml:math id="M346" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">12</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). From our
predicted pathway, the resulting product may contain one or two nitrogen atoms because, even if the second <inline-formula><mml:math id="M347" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ONO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> group is expected to be part of
the leaving group, a radical site remains on the molecule, making the <inline-formula><mml:math id="M348" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M349" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M350" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> pathway possible via reaction with residual
<inline-formula><mml:math id="M351" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the chamber. For the <inline-formula><mml:math id="M352" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system, a <inline-formula><mml:math id="M353" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compound is predicted to be formed in an analogous pathway to the
<inline-formula><mml:math id="M354" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system, as terminal double bonds may be generated. For the <inline-formula><mml:math id="M355" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene system, <inline-formula><mml:math id="M356" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> formation would be possible if an
alkyl radical rearrangement occurred on the four-membered ring, generating a terminal double bond. Finally, for the <inline-formula><mml:math id="M357" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system, a terminal
site is available after the initial right-side alkoxy scission (C2–C3), but alkyl radical ring opening could also be possible if a left-side scission
(C2–C7) were to occur.</p>
</sec>
<sec id="Ch1.S3.SS2.SSSx2" specific-use="unnumbered">
  <title>Hydrogen number</title>
      <p id="d1e4184">As previously mentioned, the hydrogen number is an indication of the bimolecular termination pathway and the presence of the subsequent terminal
functional group for <inline-formula><mml:math id="M358" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and RO radicals. For <inline-formula><mml:math id="M359" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds with a single nitrogen atom (Fig. <xref ref-type="fig" rid="Ch1.F5"/>a), <inline-formula><mml:math id="M360" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
closed-shell compounds indicate aldehyde groups created from hydrogen abstraction on a carbon atom in an <inline-formula><mml:math id="M361" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> position to an alkoxy radical or by
other <inline-formula><mml:math id="M362" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M363" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M364" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> pathways described by <xref ref-type="bibr" rid="bib1.bibx20" id="text.43"/>. <inline-formula><mml:math id="M365" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds are radicals – most
likely peroxy radical compounds, as the lifetimes of alkoxy and alkyl radicals are very short. <inline-formula><mml:math id="M366" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">17</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds are closed-shell compounds, and they contain hydroxy or hydroperoxy terminal groups formed from abstracting a hydrogen atom from a different
molecule. <inline-formula><mml:math id="M367" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> radical compounds were the most abundant for the <inline-formula><mml:math id="M368" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene, <inline-formula><mml:math id="M369" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, and <inline-formula><mml:math id="M370" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene
systems. In contrast, <inline-formula><mml:math id="M371" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> aldehyde-/ketone-containing compounds were the most abundant for the <inline-formula><mml:math id="M372" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system
and were mainly distributed among two compounds (<inline-formula><mml:math id="M373" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M374" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>). If one assumes that the concentration of
bimolecular reaction partners is similar for each MT system, it appears that the reaction products generated in the <inline-formula><mml:math id="M375" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system included
structures with especially labile hydrogen atoms in an <inline-formula><mml:math id="M376" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> position to possible alkoxy radical sites. In that case, this bimolecular hydrogen
abstraction reaction would be fast and would lead to a high ratio of <inline-formula><mml:math id="M377" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds relative to the
<inline-formula><mml:math id="M378" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M379" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">17</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds. Additionally, a moderate <inline-formula><mml:math id="M380" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
contribution was observed for the <inline-formula><mml:math id="M381" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system from a species with the same formula (<inline-formula><mml:math id="M382" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">12</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>).</p>
      <p id="d1e4545">Analogously, <inline-formula><mml:math id="M383" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical compounds with a single nitrogen atom will contain 14 hydrogen atoms if they are formed from the loss of a methyl
group, whereas closed-shell <inline-formula><mml:math id="M384" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds will contain 13 or 15 hydrogen atoms (Fig. <xref ref-type="fig" rid="Ch1.F5"/>b). For the <inline-formula><mml:math id="M385" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system,
hydroperoxy or hydroxy <inline-formula><mml:math id="M386" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds were most abundant. The dominant <inline-formula><mml:math id="M387" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> species in the <inline-formula><mml:math id="M388" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system
was a <inline-formula><mml:math id="M389" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> species; it is not currently clear how <inline-formula><mml:math id="M390" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> products can be formed. Surprisingly, the
most abundant <inline-formula><mml:math id="M391" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds for the rest of the MT systems do not fall into this <inline-formula><mml:math id="M392" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mtext mathvariant="italic">x</mml:mtext></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> category, although
some of these types of compounds make up a fraction of the overall <inline-formula><mml:math id="M393" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> signal. <inline-formula><mml:math id="M394" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dinitrogen compounds were the most abundant for the
<inline-formula><mml:math id="M395" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene (<inline-formula><mml:math id="M396" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">12</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) and <inline-formula><mml:math id="M397" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene (<inline-formula><mml:math id="M398" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) systems, with 14 hydrogen atoms indicative of the
formation of peroxy radical intermediates or an <inline-formula><mml:math id="M399" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> group. Finally, <inline-formula><mml:math id="M400" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical compounds with a single nitrogen atom are predicted
to have 10 hydrogen atoms if formed by the loss of an isopropyl group, whereas closed-shell <inline-formula><mml:math id="M401" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds will have 9 or 11 hydrogen atoms
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>c). The most abundant <inline-formula><mml:math id="M402" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compound (<inline-formula><mml:math id="M403" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), observed for both the <inline-formula><mml:math id="M404" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M405" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene system,
was a closed-shell compound, and its formula is consistent with the mechanism that we present in Fig. <xref ref-type="fig" rid="Ch1.F5"/>c, but a large radical contribution from
<inline-formula><mml:math id="M406" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> was also measured in the <inline-formula><mml:math id="M407" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system.</p>
</sec>
<sec id="Ch1.S3.SS2.SSSx3" specific-use="unnumbered">
  <title>Nitrogen number</title>
      <p id="d1e4912">Monomer compounds with a single nitrogen dominate all MT systems, although with varying abundance. The initial addition of <inline-formula><mml:math id="M408" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical leads to the
formation of these single nitrogen-containing compounds. The <inline-formula><mml:math id="M409" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene system had much higher contributions from <inline-formula><mml:math id="M410" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M411" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
compounds compared with the other MT systems, but it is expected that the majority of products detected for the <inline-formula><mml:math id="M412" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene system come from minor
pathways; therefore, unusual pathways that are normally considered to be slow can potentially be competitive and lead to the observed ratios of
nitrogen-containing compounds. We are not currently certain what those pathways are. The <inline-formula><mml:math id="M413" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system had a 10 % greater contribution
from single nitrogen-containing compounds, compared with the <inline-formula><mml:math id="M414" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene and <inline-formula><mml:math id="M415" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene systems, and a corresponding 10 % smaller
contribution from dinitrogen compounds. <inline-formula><mml:math id="M416" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-Thujene and <inline-formula><mml:math id="M417" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene both contain strained three-membered rings that can make a ring-opening
alkyl radical rearrangement reaction faster than the MTs with less strained four-membered rings (<inline-formula><mml:math id="M418" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, <inline-formula><mml:math id="M419" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene)
<xref ref-type="bibr" rid="bib1.bibx27" id="paren.44"/>. Therefore, it is not possible to know for certain how many nitrogen atoms have been lost by a molecule in the process of
oxidation. It is also not possible to attribute a product containing a single nitrogen to the initial <inline-formula><mml:math id="M420" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical addition to the parent
<inline-formula><mml:math id="M421" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene molecule. This pathway would be available early in the oxidation mechanism for <inline-formula><mml:math id="M422" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene, but <inline-formula><mml:math id="M423" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene requires one
generation of oxidation to pass before the secondary double bond can be generated (Sect. <xref ref-type="fig" rid="Ch1.F1"/>). Additionally, the <inline-formula><mml:math id="M424" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system
has other pathways that can lead to highly oxidized species whereas the <inline-formula><mml:math id="M425" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system is currently predicted to only have one pathway that
leads to secondary double bond generation. Dinitrogen compounds can be formed via <inline-formula><mml:math id="M426" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M427" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M428" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (from excess <inline-formula><mml:math id="M429" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the
chamber), and this can also form a product with two nitrogen atoms. The rate constant for this <inline-formula><mml:math id="M430" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M431" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M432" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reaction is highly
uncertain, making explicit kinetic modeling of the <inline-formula><mml:math id="M433" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fate challenging.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS3">
  <label>3.2.3</label><title>Categorized dimer composition and mechanistic implications</title>
</sec>
<sec id="Ch1.S3.SS2.SSSx4" specific-use="unnumbered">
  <title>Carbon number</title>
      <p id="d1e5160"><inline-formula><mml:math id="M434" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds were the most abundant dimers across all MT systems. However, the <inline-formula><mml:math id="M435" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system had a large (22 %) <inline-formula><mml:math id="M436" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">17</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
contribution, whereas the other MT systems produced negligible (<inline-formula><mml:math id="M437" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 6 %) <inline-formula><mml:math id="M438" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">17</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dimers. Correspondingly, a large <inline-formula><mml:math id="M439" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> monomer
contribution was observed for the <inline-formula><mml:math id="M440" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system but not for the <inline-formula><mml:math id="M441" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene or <inline-formula><mml:math id="M442" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene systems. <inline-formula><mml:math id="M443" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dimers were
produced in all MT systems, but the <inline-formula><mml:math id="M444" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system had an approximately 20 % greater fractional <inline-formula><mml:math id="M445" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> contribution than <inline-formula><mml:math id="M446" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene
(10 %) and <inline-formula><mml:math id="M447" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene (18 %), even though the <inline-formula><mml:math id="M448" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system produced the highest percentage of <inline-formula><mml:math id="M449" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> monomers. Dimers
with carbon numbers other than 20 imply that, after alkoxy decomposition and fragmentation of a <inline-formula><mml:math id="M450" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> monomer, the newly generated monomer
fragment must contain an active radical site. This can occur through the generation of a secondary double bond within one of the monomer units through
alkyl radical rearrangement. Another possibility is that the smaller leaving group is a closed-shell species, leaving the larger fragment with an
alkyl radical. A possible example of this rearrangement is shown in Fig. <xref ref-type="fig" rid="Ch1.F5"/>c, in which a <inline-formula><mml:math id="M451" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical is generated with acetone as
the leaving group in the <inline-formula><mml:math id="M452" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system. That <inline-formula><mml:math id="M453" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> alkyl radical can be oxidized and can possibly form an adduct with a <inline-formula><mml:math id="M454" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
radical, making a <inline-formula><mml:math id="M455" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">17</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dimer that is uniquely observed for the <inline-formula><mml:math id="M456" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system. <inline-formula><mml:math id="M457" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dimers can potentially be formed through
a similar radical rearrangement pathway, as discussed above (Sect. <xref ref-type="sec" rid="Ch1.S3.SS2.SSS2"/>). It is possible to create a <inline-formula><mml:math id="M458" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dimer from that
<inline-formula><mml:math id="M459" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fragment, as another active radical site could exist on the molecule after <inline-formula><mml:math id="M460" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical addition to the newly generated double
bond. An analogous <inline-formula><mml:math id="M461" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M462" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dimer could be formed from the <inline-formula><mml:math id="M463" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene and <inline-formula><mml:math id="M464" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene systems.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS2.SSSx5" specific-use="unnumbered">
  <title>Hydrogen number</title>
      <p id="d1e5467">Closed-shell <inline-formula><mml:math id="M465" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds formed from two <inline-formula><mml:math id="M466" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds (<inline-formula><mml:math id="M467" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M468" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M469" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) have 32 hydrogen atoms and were the
most abundant type of dimers in all MT systems. If <inline-formula><mml:math id="M470" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds have an alternate hydrogen number, it is assumed that a second double bond
was generated at some point during the oxidation process, forming a monomer species with both an active radical site and a terminated site
(<inline-formula><mml:math id="M471" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CHO</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M472" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OOH</mml:mi></mml:mrow></mml:math></inline-formula>, or <inline-formula><mml:math id="M473" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:math></inline-formula>). <inline-formula><mml:math id="M474" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds make up <inline-formula><mml:math id="M475" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 80 % of the total observed <inline-formula><mml:math id="M476" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> signal from the
<inline-formula><mml:math id="M477" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system and are predicted to form via the addition of a <inline-formula><mml:math id="M478" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> radical and a
<inline-formula><mml:math id="M479" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> radical. In contrast, the <inline-formula><mml:math id="M480" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system produced <inline-formula><mml:math id="M481" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">32</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds with the
highest abundance among <inline-formula><mml:math id="M482" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> species, and the <inline-formula><mml:math id="M483" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system produced both <inline-formula><mml:math id="M484" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">30</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M485" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">32</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds with equal intensity. As with the <inline-formula><mml:math id="M486" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> monomer units, it is uncertain where the extra two
hydrogen atoms are gained. For the <inline-formula><mml:math id="M487" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system, <inline-formula><mml:math id="M488" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">26</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> molecules were the most abundant <inline-formula><mml:math id="M489" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> species,
which is consistent with a <inline-formula><mml:math id="M490" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>-<inline-formula><mml:math id="M491" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> monomer fragment combining with a
<inline-formula><mml:math id="M492" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>-<inline-formula><mml:math id="M493" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> monomer.</p>
</sec>
<sec id="Ch1.S3.SS2.SSSx6" specific-use="unnumbered">
  <title>Nitrogen number</title>
      <p id="d1e5881">For <inline-formula><mml:math id="M494" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dimers, a nitrogen number of two can correspond to the addition of <inline-formula><mml:math id="M495" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">RO</mml:mi></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M496" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radicals with one substituent <inline-formula><mml:math id="M497" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">ONO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
group each. It is expected that products without nitrogen atoms lose them in termination steps. Thus, dimers with two nitrogen atoms cannot be formed by
the addition of a dinitrogen monomer and a monomer with no nitrogen atoms unless two radical sites are available on the same molecule and one
participates in <inline-formula><mml:math id="M498" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M499" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M500" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> adduct formation while the other leads to the loss of <inline-formula><mml:math id="M501" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. This would create a monomer with no
nitrogen atoms that is also bonded to another monomer unit. <inline-formula><mml:math id="M502" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dimers containing two nitrogen atoms are the most abundant across all MT
systems. Very small contributions are observed from <inline-formula><mml:math id="M503" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M504" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M505" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> species. The <inline-formula><mml:math id="M506" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system has a considerable
contribution (13 %) from single nitrogen-containing dimer species. The single nitrogen-containing compounds can possibly be formed by the same
combination of monomer units mentioned above for <inline-formula><mml:math id="M507" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">20</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds, except one of the monomers contains only a single nitrogen atom instead
of two. Additionally, it is possible that ozonolysis-<inline-formula><mml:math id="M508" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and nitrate-<inline-formula><mml:math id="M509" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> intermediates engaging in cross-reactions play a role, as the
rate constant for <inline-formula><mml:math id="M510" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene with ozone or <inline-formula><mml:math id="M511" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical has not been measured.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e6077">Effective <inline-formula><mml:math id="M512" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio plotted vs. <inline-formula><mml:math id="M513" display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>/</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> for all measured oxidation products. Plots include oxygen atoms only on the carbon backbone. Each marker represents one compound, and the marker area is proportional to the signal intensity. Note that each MT system is scaled to its own maximum intensity; thus, marker sizes cannot be compared across MT systems. The <inline-formula><mml:math id="M514" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene plot shown is for the high-mixing-ratio (70 <inline-formula><mml:math id="M515" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>) experiment, and all others are 41 <inline-formula><mml:math id="M516" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula></p></caption>
            <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/9017/2022/acp-22-9017-2022-f07.png"/>

          </fig>

</sec>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><?xmltex \opttitle{Effective {$\protect\chem{O:C}$}~ratio of oxidation products}?><title>Effective <inline-formula><mml:math id="M517" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio of oxidation products</title>
      <p id="d1e6154">The average, weighted <inline-formula><mml:math id="M518" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios for total detected organic reaction products are as follows: <inline-formula><mml:math id="M519" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene, 0.71; <inline-formula><mml:math id="M520" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, 0.62;
<inline-formula><mml:math id="M521" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene, 0.45; and <inline-formula><mml:math id="M522" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, 0.73. The reported effective <inline-formula><mml:math id="M523" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio for all molecules does not include the oxygen atoms from
the nitrate group (two oxygen atoms subtracted for every <inline-formula><mml:math id="M524" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> group). Even though the average <inline-formula><mml:math id="M525" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio correlates with observed
particle formation for every system except <inline-formula><mml:math id="M526" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, the effective <inline-formula><mml:math id="M527" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio distribution is very different for all systems
(Fig. <xref ref-type="fig" rid="Ch1.F7"/>). Additionally, if products are grouped into monomer and dimer species, the effective <inline-formula><mml:math id="M528" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios do not necessarily
correlate with observed particle formation. For monomer species, the average effective <inline-formula><mml:math id="M529" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios were found to have an opposite trend with the
intensity of new particle formation events, with the <inline-formula><mml:math id="M530" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene reaction products having the lowest effective <inline-formula><mml:math id="M531" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> (0.700), followed by
<inline-formula><mml:math id="M532" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene (0.724), <inline-formula><mml:math id="M533" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene (0.771), and <inline-formula><mml:math id="M534" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene (0.780). The dimer products do not show a trend with effective
<inline-formula><mml:math id="M535" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios: <inline-formula><mml:math id="M536" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene, 0.37; <inline-formula><mml:math id="M537" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene, 0.43; <inline-formula><mml:math id="M538" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene, 0.37; and <inline-formula><mml:math id="M539" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, 0.50. In general, we observe lower
<inline-formula><mml:math id="M540" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios for dimers compared with monomers. If the average <inline-formula><mml:math id="M541" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> for the dimer compounds is around 0.4, they were possibly formed from
monomers with an average <inline-formula><mml:math id="M542" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> of 0.6. The average monomer <inline-formula><mml:math id="M543" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> observed from all experiments was 0.7. For the <inline-formula><mml:math id="M544" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system, the
majority of the monomer species and the dimer species are centered in a narrow effective <inline-formula><mml:math id="M545" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> range. This is in contrast to the observations
from the other MT systems. If the three-membered ring is opened early on in the oxidation mechanism, and the subsequently generated double bond is
attacked by an <inline-formula><mml:math id="M546" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical, the molecule will be symmetrical in one plane (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). It is possible that this symmetry leads to a
lack of diversity of products, reducing the possibility of structurally unique products by half. It is important to note that <inline-formula><mml:math id="M547" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS is
selective towards highly oxidized species, so the oxygen distribution reported here is within the limits of the sensitivity of the reagent ion. Every
<inline-formula><mml:math id="M548" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> bin is assumed to be ionized with the same efficiency.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e6469"><bold>(a)</bold> Time series of total organic compounds for each MT system measured with <inline-formula><mml:math id="M549" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS and plotted with the associated particle number concentration. The <inline-formula><mml:math id="M550" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene traces shown are from the high-concentration (70 <inline-formula><mml:math id="M551" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ppb</mml:mi></mml:mrow></mml:math></inline-formula>) experiment. <bold>(b)</bold> The formation : sink ratio of reaction products of the <inline-formula><mml:math id="M552" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system plotted against the effective <inline-formula><mml:math id="M553" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/9017/2022/acp-22-9017-2022-f08.png"/>

        </fig>

<sec id="Ch1.S3.SS3.SSS1">
  <label>3.3.1</label><title>Temporal analysis of oxidation products</title>
      <p id="d1e6538">When comparing the uncorrected (not corrected for wall losses) time series traces for each MT system, a decrease in product signal after the initial
increase was observed for the two systems (<inline-formula><mml:math id="M554" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene, <inline-formula><mml:math id="M555" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene) that exhibited new particle formation (Fig. <xref ref-type="fig" rid="Ch1.F8"/>). These decreases
roughly correspond to the increasing particle number. More quantitative analysis of particle growth rates is beyond the scope of the current study but is
planned for future studies. The decrease in gas-phase products over the course of the experiment was not observed for the MT systems that did not
produce particles (<inline-formula><mml:math id="M556" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M557" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene).</p>
      <p id="d1e6571">Different reaction products have different time series because of different formation rates and sinks, as observed in the <inline-formula><mml:math id="M558" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system. At
this time, this analysis is only available for the <inline-formula><mml:math id="M559" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system; however, we expect similar behavior for the products of the other MT
systems. By grouping the individual species into the categories detailed in Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/>, insights can be gained into the net formation
time (<inline-formula><mml:math id="M560" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>), which considers wall loss but not loss due to the condensation sink on particles. The time series curves were fitted to
sigmoidal curves to determine the time it took for the signal to reach one-half the maximum (<inline-formula><mml:math id="M561" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>). In general, monomers were found to have
faster net formation time <inline-formula><mml:math id="M562" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> than dimers (Fig. <xref ref-type="fig" rid="Ch1.F8"/>). <inline-formula><mml:math id="M563" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds have the fastest <inline-formula><mml:math id="M564" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and are the
most abundant monomer species. Most of these species are also single nitrogen-containing compounds. Within the <inline-formula><mml:math id="M565" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> category,
<inline-formula><mml:math id="M566" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds and <inline-formula><mml:math id="M567" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">17</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> compounds have similar <inline-formula><mml:math id="M568" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> times, whereas the
<inline-formula><mml:math id="M569" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mtext mathvariant="italic">z</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> species have a slower <inline-formula><mml:math id="M570" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> overall, falling into the same <inline-formula><mml:math id="M571" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> regime as the dimer compounds. If one assumes that
these <inline-formula><mml:math id="M572" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds all have a similar condensation sink rate, it appears that <inline-formula><mml:math id="M573" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radicals and <inline-formula><mml:math id="M574" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">17</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> hydroxy and
hydroperoxy compounds form faster than the <inline-formula><mml:math id="M575" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> carbonyl compounds. <inline-formula><mml:math id="M576" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds have more variable <inline-formula><mml:math id="M577" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> times but are, in
general, slower than the fastest <inline-formula><mml:math id="M578" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> monomers. Additionally, the most abundant <inline-formula><mml:math id="M579" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> species (<inline-formula><mml:math id="M580" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">14</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">12</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) has an
<inline-formula><mml:math id="M581" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> value in the dimer region (note that this compound contains two nitrogen atoms). Additionally, for <inline-formula><mml:math id="M582" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds with one nitrogen
atom, there is an almost imperceptible increasing trend relating <inline-formula><mml:math id="M583" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and the effective <inline-formula><mml:math id="M584" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio (Fig. <xref ref-type="fig" rid="Ch1.F8"/>b). A similar slight trend can
be observed for <inline-formula><mml:math id="M585" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds. It is possible that, because the formation and sink times cannot be isolated, more highly oxidized molecules
take longer to form but also condense more rapidly.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <label>4</label><title>Conclusions and implications for atmospheric chemistry</title>
      <p id="d1e7001"><inline-formula><mml:math id="M586" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS has been used to probe the composition of <inline-formula><mml:math id="M587" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-MT oxidation products in laboratory chamber experiments in order to gain
mechanistic insights. The major detected species formed in each system were distinctly different, showing the effect of MT structure on the oxidation
mechanism. We initially hypothesized that the structural similarities between <inline-formula><mml:math id="M588" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene and <inline-formula><mml:math id="M589" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene would lead to the dominance of
the relatively high-volatility oxidation products thujenaldehyde and pinonaldehyde, respectively. Our results, however, suggest that an alkyl radical
rearrangement can lead to an intermediate that can undergo additional oxidation and form highly oxygenated molecule (HOM) monomers and dimers (Fig. <xref ref-type="fig" rid="Ch1.F1"/>) in
<inline-formula><mml:math id="M590" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene oxidation. The lack of measurable new particle formation in spite of the presence of these dimers indicates a more complex
relationship between HOMs and new particle formation. This should be studied in greater detail to provide insights into the ability of HOMs to
participate in nanoparticle formation and growth.</p>
      <p id="d1e7050">For all systems, the HOM carbon number, an indicator of fragmentation pathways, supports the notion that decomposition is more likely when leaving groups
become highly substituted. The presence of substantial amounts of <inline-formula><mml:math id="M591" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fragments for the <inline-formula><mml:math id="M592" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M593" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene systems is
consistent with the loss of an isopropyl group from those species, and we have hypothesized the mechanism by which this occurs
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>c). The hydrogen numbers for <inline-formula><mml:math id="M594" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds, an indicator of termination pathways and the presence of closed-shell or
radical intermediates, show the dominance of peroxy radical <inline-formula><mml:math id="M595" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds for all but the <inline-formula><mml:math id="M596" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system – the latter of which was
dominated by closed-shell <inline-formula><mml:math id="M597" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> aldehydes or ketones. For <inline-formula><mml:math id="M598" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:mi mathvariant="normal">N</mml:mi></mml:mrow></mml:math></inline-formula> products, closed-shell <inline-formula><mml:math id="M599" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> hydroperoxy or hydroxy compounds
dominated the <inline-formula><mml:math id="M600" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene system, and <inline-formula><mml:math id="M601" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> species dominate the <inline-formula><mml:math id="M602" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene system by a mechanism that is unclear to us. For the
<inline-formula><mml:math id="M603" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M604" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene systems, the dominant <inline-formula><mml:math id="M605" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compounds detected were species containing 2 nitrogen atoms and 14 hydrogen
atoms. The dominant <inline-formula><mml:math id="M606" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fragment observed for <inline-formula><mml:math id="M607" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene and <inline-formula><mml:math id="M608" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>-pinene was a closed-shell <inline-formula><mml:math id="M609" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">7</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">9</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> compound with possible
isomers, again consistent with the mechanism we propose in Fig. <xref ref-type="fig" rid="Ch1.F5"/>c. The nitrogen number for all monomers was dominated by those containing a
single nitrogen atom, which arises from the initial <inline-formula><mml:math id="M610" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radical addition. Some later-generation monomeric dinitrogen compounds were detected
in all systems with the exception of <inline-formula><mml:math id="M611" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene – the latter of which has fewer pathways for the formation of a second double bond. This
limitation may be partly responsible for the lack of observed new particle formation for <inline-formula><mml:math id="M612" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-thujene despite the abundance of HOMs in that system.</p>
      <p id="d1e7276">The observed dimers included major peaks containing 20, 19, and 17 carbon atoms, which is consistent with the observed monomers containing 10, 9, and
7 carbon atoms. The hydrogen numbers for all systems indicate that <inline-formula><mml:math id="M613" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> dimers form predominantly closed-shell compounds with 32 hydrogen
atoms. In general, our observations of the hydrogen and nitrogen number in detected dimers are consistent with the composition of detected monomers, which
suggests dimer formation by cross-reactions between nitrate-containing <inline-formula><mml:math id="M614" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">RO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> species.</p>
      <p id="d1e7301">Detected <inline-formula><mml:math id="M615" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios of gas-phase products provide some insights into new particle formation mechanisms. In general, monomer <inline-formula><mml:math id="M616" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios share a very small
trend with new particle formation intensity. It is possible that monomers with higher <inline-formula><mml:math id="M617" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios are preferentially partitioning into growing
nanoparticles, and, indeed, we observe a decrease in HOMs coincident with an increase in the concentration of newly formed particles, as discussed in
Sect. <xref ref-type="sec" rid="Ch1.S3.SS3.SSS1"/>.</p>
      <p id="d1e7343">Finally, our temporal analysis of oxidation products from the <inline-formula><mml:math id="M618" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>-3-carene system shows unique, species-dependent formation rates and provide
insights into wall loss rates. In general, dimers formed more slowly than monomers. As dimers had lower <inline-formula><mml:math id="M619" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratios, there was a weak
anticorrelation between <inline-formula><mml:math id="M620" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi><mml:mo>:</mml:mo><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> ratio and the net formation time. This correlation is not apparent for monomers, but <inline-formula><mml:math id="M621" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> monomers did
display some trends such as <inline-formula><mml:math id="M622" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">16</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> radicals and <inline-formula><mml:math id="M623" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">17</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> hydroxy and hydroperoxy compounds forming faster than <inline-formula><mml:math id="M624" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> carbonyl
compounds. Additional applications of this temporal analysis approach for the other MT systems would be an interesting extension of this work.</p>
      <p id="d1e7422">The information gained from this detailed comparison of gas-phase composition with currently established mechanisms provides new information on these
oxidation processes and further elucidates the effect of these species on particle formation and growth. A wider range of oxidation products (semi-volatile organic compounds)
need to be measured to observe the compounds not detected by <inline-formula><mml:math id="M625" display="inline"><mml:mrow class="chem"><mml:msubsup><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> CIMS in order to more comprehensively draw conclusions about particle
formation potential. Further analysis of the particle formation rate, particle composition, and modeling of energy barriers for some of the proposed
mechanistic pathways is needed. Additional spectroscopy can also be useful for confirming the presence of functional groups.</p>
</sec>

      
      </body>
    <back><notes notes-type="codeavailability"><title>Code availability</title>

      <p id="d1e7443">KinSim software (version 4) runs on the Igor Pro programming environment
and is freely available from the following web portal: <uri>http://tinyurl.com/kinsim-release</uri> (last access: 27 June 2022; <xref ref-type="bibr" rid="bib1.bibx36" id="altparen.45"/>).</p>
  </notes><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e7455">Data are publicly available and are archived at
<ext-link xlink:href="https://doi.org/10.7280/D1XX2R" ext-link-type="DOI">10.7280/D1XX2R</ext-link> <xref ref-type="bibr" rid="bib1.bibx40" id="paren.46"/>.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e7464">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/acp-22-9017-2022-supplement" xlink:title="pdf">https://doi.org/10.5194/acp-22-9017-2022-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e7473">MD and JNS conducted chamber experiments and curated, analyzed, investigated, and visualized data from all measurements. DCD, AM, and JLF helped design chamber studies and conducted the TD-CRDS analysis and kinetic modeling. MD prepared the manuscript with contributions from DCD, AM, JLF, and JNS. JNS and JLF acquired funding and supervised the project.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e7479">The contact author has declared that neither they nor their co-authors have any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e7485">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e7491">This research was supported by funding from the US National Science Foundation (NSF; grant no. AGS-1762098) and from the US Department of Energy (DOE; grant no. DE-SC0019000). The authors would like to acknowledge Emily McLaughlin Santa Maria, Mike Lawler, Sabrina Chee, Hayley Glicker, Deanna Myers, Adam Thomas, Jeremy Wakeen, and Paulus Bauer for their contributions to discussions regarding this project.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e7496">This research has been supported by the National Science Foundation (grant no. AGS-1762098) and the US Department of Energy (grant no. DE-SC0019000).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e7502">This paper was edited by Arthur Chan and reviewed by two anonymous referees.</p>
  </notes><ref-list>
    <title>References</title>

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