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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-22-12961-2022</article-id><title-group><article-title>Assessment of NAAPS-RA performance in Maritime Southeast Asia during
CAMP<inline-formula><mml:math id="M1" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>Ex</article-title><alt-title>Assessment of NAAPS-RA performance in Maritime Southeast Asia</alt-title>
      </title-group><?xmltex \runningtitle{Assessment of NAAPS-RA performance in Maritime Southeast Asia}?><?xmltex \runningauthor{E.-L. Edwards et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Edwards</surname><given-names>Eva-Lou</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8306-3220</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Reid</surname><given-names>Jeffrey S.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Xian</surname><given-names>Peng</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9661-8045</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Burton</surname><given-names>Sharon P.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Cook</surname><given-names>Anthony L.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff4">
          <name><surname>Crosbie</surname><given-names>Ewan C.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff4">
          <name><surname>Fenn</surname><given-names>Marta A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Ferrare</surname><given-names>Richard A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Freeman</surname><given-names>Sean W.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Hair</surname><given-names>John W.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Harper</surname><given-names>David B.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Hostetler</surname><given-names>Chris A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff4">
          <name><surname>Robinson</surname><given-names>Claire E.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff4">
          <name><surname>Scarino</surname><given-names>Amy Jo</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Shook</surname><given-names>Michael A.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2659-484X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Sokolowsky</surname><given-names>G. Alexander</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>van den Heever</surname><given-names>Susan C.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9843-3864</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff4">
          <name><surname>Winstead</surname><given-names>Edward L.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Woods</surname><given-names>Sarah</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2174-8889</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Ziemba</surname><given-names>Luke D.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff7">
          <name><surname>Sorooshian</surname><given-names>Armin</given-names></name>
          <email>armin@arizona.edu</email>
        <ext-link>https://orcid.org/0000-0002-2243-2264</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Department of Chemical and Environmental Engineering, University of
Arizona, Tucson, AZ 85721, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Marine Meteorology Division, U. S. Naval Research Laboratory,
Monterey, CA 93943, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>NASA Langley Research Center, Hampton, VA 23681, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Science Systems and Applications, Inc., Hampton, VA 23666, USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Department of Atmospheric Science, Colorado State University, Fort
Collins, CO 80523, USA</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>SPEC Inc., Boulder, CO 80301, USA</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>Department of Hydrology and Atmospheric Sciences, University of
Arizona, Tucson, AZ 85721, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Armin Sorooshian (armin@arizona.edu)</corresp></author-notes><pub-date><day>10</day><month>October</month><year>2022</year></pub-date>
      
      <volume>22</volume>
      <issue>19</issue>
      <fpage>12961</fpage><lpage>12983</lpage>
      <history>
        <date date-type="received"><day>20</day><month>October</month><year>2021</year></date>
           <date date-type="rev-request"><day>30</day><month>November</month><year>2021</year></date>
           <date date-type="rev-recd"><day>8</day><month>September</month><year>2022</year></date>
           <date date-type="accepted"><day>14</day><month>September</month><year>2022</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2022 </copyright-statement>
        <copyright-year>2022</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e316">Monitoring and modeling aerosol particle life cycle in Southeast Asia (SEA)
is challenged by high cloud cover, complex meteorology, and the wide range
of aerosol species, sources, and transformations found throughout the
region. Satellite observations are limited, and there are few in situ
observations of aerosol extinction profiles, aerosol properties, and
environmental conditions. Therefore, accurate aerosol model outputs are
crucial for the region. This work evaluates the Navy Aerosol Analysis and
Prediction System Reanalysis (NAAPS-RA) aerosol optical thickness (AOT) and
light extinction products using airborne aerosol and meteorological
measurements from the Cloud, Aerosol, and Monsoon Processes Philippines
Experiment (CAMP<inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>Ex) conducted in 2019 during the SEA southwest monsoon
biomass burning season. Modeled AOTs and extinction coefficients are
compared to those retrieved with a high spectral resolution lidar (HSRL-2).
Agreement between simulated and retrieved AOT (<inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.78, relative
bias <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo></mml:mrow></mml:math></inline-formula>5 %, normalized root mean square error (NRMSE) <inline-formula><mml:math id="M5" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 48 %) and
aerosol extinction coefficients (<inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.80, 0.81, and 0.42; relative
bias <inline-formula><mml:math id="M7" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3 %, <inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> %, and <inline-formula><mml:math id="M9" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:math></inline-formula> %; NRMSE <inline-formula><mml:math id="M10" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 47 %, 53 %, and 118 % for altitudes
between 40–500, 500–1500, and <inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> m, respectively)
is quite good considering the challenging environment and few opportunities
for assimilations of AOT from satellites during the campaign. Modeled
relative humidities (RHs) are negatively biased at all altitudes (absolute
bias <inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> %, <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> %, and <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> % for altitudes <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula> 500–1500
and <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> m, respectively), motivating interest in the role of
RH errors in AOT and extinction simulations. Interestingly, NAAPS-RA AOT and
extinction agreement with the HSRL-2 does not change significantly (i.e.,
NRMSE values do not all decrease) when RHs from dropsondes are substituted
into the model, yet biases all move in a positive direction. Further
exploration suggests changes in modeled extinction are more sensitive to the
actual magnitude of both the extinction coefficients and the dropsonde RHs
being substituted into the model as opposed to the absolute differences
between simulated and measured RHs. Finally, four case studies examine how
model errors in RH and the hygroscopic growth parameter, <inline-formula><mml:math id="M17" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>, affect
simulations of extinction in the mixed layer (ML). We find NAAPS-RA
overestimates the hygroscopicity of (i) smoke particles from biomass burning
in the Maritime Continent (MC) and (ii) anthropogenic emissions transported
from East Asia. This work mainly provides insight into the relationship
between errors in modeled RH and simulations of AOT and extinction in a
humid and tropical environment influenced by a myriad of meteorological
conditions and particle types. These results can be interpreted and
addressed by the modeling community as part of the effort to better
understand, quantify, and forecast atmospheric conditions in SEA.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e485">Southeast Asia (SEA) has long been considered one of the most susceptible
locations to the repercussions of climate change (IPCC, 2013, 2007), with the Philippines
considered one of the most vulnerable in particular (Yusuf and
Francisco, 2009). The Philippines is experiencing rapid urbanization,
industrialization, and economic development along its extensive coastlines (Alas et al., 2018). Rising sea levels, decreased
precipitation in association with the June–September southwest monsoon
(SWM), prolonged droughts (Cruz et al., 2013), and increased
observations of days with anomalously high rainfall (Cinco et al., 2014) all present threats to the
homes, water and food security, electric needs, and livelihood of millions
of people living in this area (IPCC, 2013).
Additionally, tropical cyclones and their ensuing storm surges have
consistently battered the Philippines (e.g.,
Lagmay et al., 2015). These storms may become more severe as global
temperatures increase (Sobel et al., 2016; Knutson et al., 2019).
Considering all these grave threats, it is more important than ever to be
able to model future environmental conditions in SEA and issue timely
advisories to inhabitants of the region.</p>
      <p id="d1e488">Aerosol particles play a key role in the SEA regional climate and the
hydrological cycle, where aerosol–cloud interactions are dictated by and, in
themselves, influence atmospheric convection (e.g., Reid et al., 2012;
Thornton et al., 2017; Ross et al., 2018). However, monitoring and modeling
the properties, transport pathways, and chemical evolution of aerosol
particles in SEA, as well as their relationships with the complex
meteorology, has proven exceedingly difficult for multiple reasons, as
outlined in Reid et al. (2013). Diverse natural and anthropogenic aerosol
particles with dissimilar microphysical properties converge throughout the
region, especially in densely populated coastal environments (e.g., Cruz
et al., 2019; Hilario et al., 2020b; Kecorius et al., 2017). During the SWM,
agricultural and deforestation fires as well as peat burning peak throughout
much of the Maritime Continent (MC), resulting in enormous quantities of
particulate and gaseous emissions that are then transported into the
Philippines and northwestern tropical Pacific (NWTP). At the same time,
pollution from Asia, local Philippine emissions (e.g., cooking, vehicular
combustion, road dust), and ship exhaust are constantly mixed with naturally
emitted aerosols, such as marine particles (e.g., sea salt (Azadiaghdam et
al., 2019), organic matter, and derivatives of dimethylsulfide (DMS; Stahl
et al., 2020)), dust (Cruz et al., 2019; Campbell et al., 2013), and
volcanic emissions (Hilario et al., 2021). Lack of funding and various
political issues have stunted efforts for routine, cohesive, and fully
publicly available aerosol measurements across the region (Reid et al.,
2013). Satellite retrievals are frequently impinged by nearly ubiquitous
cloud cover. This shortage of reliable data has resulted in a lack of
quantitative knowledge of the aerosol life cycle in this region, which has
led to uncertainty in forecasting aerosol properties and their participation
in regional atmospheric processes (e.g., Adler et al., 2001; Mahmud and
Ross, 2005; Dai, 2006; Sun et al., 2007; Xian et al., 2009).</p>
      <p id="d1e491">Reanalyses are a highly attractive tool to study and characterize the
environment in SEA as they can provide consistent and widespread simulations
when remotely sensed products and/or in situ observations are unavailable.
Aerosol optical thickness (AOT) is one of the most common products available
from aerosol models (e.g., Colarco et al., 2010; Zhu et al., 2017;
Sessions et al., 2015) and reanalyses (e.g., Gelaro et al., 2017; Inness
et al., 2019; Lynch et al., 2016; Randles et al., 2017; Yumimoto et al.,
2017) that can be useful for inferring information about air quality (e.g., Gupta et al., 2006), visibility (e.g., Retalis et al., 2010), and particle mass
concentrations (Liu et al., 2007) at a given
location. AOT is also the most available and skillful aerosol property from
remote sensing allowing for its retrievals to be assimilated into reanalysis
models to produce a more robust product. However, the number of AOT
assimilations available in and around the Philippines is limited because of
the pervasive cloud cover, making model outputs of AOT subject to
uncertainty for this region. In this paper, we assess performance of the
Navy Aerosol Analysis and Prediction System Reanalysis (NAAPS-RA; Lynch et al., 2016) by
comparing simulated AOT and aerosol extinction (the subsequent primary
observable after AOT) to those retrieved with a high spectral resolution
lidar (HSRL-2; Hair et al., 2008) in and around the
Philippines during the Cloud, Aerosol, and Monsoon Processes Philippines
Experiment (CAMP<inline-formula><mml:math id="M18" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>Ex). NAAPS has been widely used and verified to
understand the aerosol life cycle in SEA (Hyer and Chew, 2010; Reid et al.,
2012, 2015, 2016a, b; Xian et
al., 2013; Atwood et al., 2017) and its impact on clouds (Ross et al., 2018). However, its many products have not
yet been simultaneously evaluated for the region.</p>
      <p id="d1e503">To quantify AOT and extinction, NAAPS-RA uses simulations of speciated
particle mass concentrations and relative humidity (RH) in four dimensions
(three-dimensional space and time), as well as assumptions about the optical
and hygroscopic properties of each particle type. Extensive vertical
profiles of observed speciated particle mass concentrations, the particle
hygroscopic growth parameter (<inline-formula><mml:math id="M19" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>), and RH collocated with HSRL-2
retrievals of extinction and AOT are required to thoroughly evaluate the
model's outputs and identify sources of error. Such collocated profiles of
mass concentrations, <inline-formula><mml:math id="M20" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values, and HSRL-2 retrievals are limited for
this campaign. However, collocated profiles of HSRL-2 retrievals and RH are
widely available since (i) 193 dropsondes were released during the campaign,
and (ii) dropsondes were released when the aircraft was on high-altitude
legs, which means multiple HSRL-2 retrievals of extinction and AOT are
typically available for locations coinciding with dropsonde releases. For
this reason, we focus mainly on how replacing modeled RH profiles with
dropsonde profiles affects NAAPS-RA simulations for AOT and extinction.</p>
      <p id="d1e521">As discussed, a full investigation into sources of error in NAAPS-RA AOT and
extinction simulations is restricted by the lack of observed column profiles
of <inline-formula><mml:math id="M21" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> and speciated mass concentrations. However, we attempt to
evaluate the effect of these parameters on modeled extinction coefficients
for four specific case studies by confining our analysis to the mixed layer
(ML) and assuming particle mass concentrations and microphysical properties
are homogenous in this layer. Aircraft in situ observations of <inline-formula><mml:math id="M22" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> are
substituted into NAAPS-RA to explore model performance when hygroscopic
growth is quantified as accurately as possible. We also compare in situ fine
and coarse particle mass concentrations to the simulated values within the
ML</p>
      <p id="d1e538">Knowledge from this work provides insight into how well NAAPS-RA simulates
AOT and extinction in a region where data assimilations from remote sensing
are limited. We then explore how errors in simulated RH may be contributing
to errors in AOT and extinction outputs. The modeling community can use
these findings to help confront issues in NAAPS-RA as well as to learn when
simulated AOT and extinction values are most (and least) sensitive to errors
in modeled RH.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Data and methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Field campaign description</title>
      <p id="d1e556">The CAMP<inline-formula><mml:math id="M23" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>Ex field campaign (24 August to 5 October 2019; Table S1 in the Supplement)
examined the effect of anthropogenic and natural aerosol particles on warm
and mixed-phase precipitation in SEA during the SWM and a short post-monsoon
period. The NASA P-3 aircraft carried out 19 research flights (RFs) equipped
with a payload of instruments and remote sensors to sample the
microphysical, hydrological, dynamical, thermodynamic, and radiative
properties of the environment in and around the Philippines. Specific air
masses sampled include long-range transport of peat burning and pollution
from Borneo, Asian pollution, Philippine outflow, and cleaner marine
conditions (Hilario et al., 2021). Some of the specific
interests include (i) investigating relationships between aerosol particle
properties (e.g., number concentrations, composition, and spatial distribution)
and shallow cumulus and congestus cloud features (e.g., optical properties,
microphysical properties, and their transition from shallow to deep convection),
(ii) assessing how the region's meteorology both influenced and was
influenced by aerosol–cloud interactions, and (iii) developing remote
sensing, modeling, and technology advances to improve regional monitoring
and Earth system assessment. The flight strategy consisted of (i) identifying and flying to locations with opportune meteorological conditions
and/or air masses (e.g., smoke advecting from the MC, East Asian outflow);
(ii) beginning with a high-altitude leg (<inline-formula><mml:math id="M24" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 6–8 km) at the
location of interest so that remote sensors (e.g., the HSRL-2) and any
released dropsondes could inform of noteworthy environmental features below
the aircraft; and (iii) flying to identified features to sample the relevant
aerosol field, cloud properties, and environmental conditions.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Airborne in situ measurements</title>
      <p id="d1e583">The P-3 carried a comprehensive package of instruments for quantifying aerosol particle properties, cloud properties, and meteorology. Here we discuss the instrument observations relevant to this study. Dropsonde data
provided vertical profiles of RH, while a condensation particle counter (CPC;
TSI-3756) supplied number concentrations for particles with diameters
greater than 3 nm (Table 1). Two nephelometers (TSI-3563) in parallel (Anderson and Ogren, 1998) provided the hygroscopic growth parameter (<inline-formula><mml:math id="M25" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>; 550 nm) used to calculate the hygroscopic scattering
enhancement factor (<inline-formula><mml:math id="M26" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>(RH); Ziemba et al., 2013). An Aerodyne high-resolution time-of-flight aerosol mass spectrometer (AMS; Canagaratna et al., 2007; Decarlo et al., 2006) provided nonrefractory, chemically resolved aerosol particle mass concentrations for particles with diameters of 60–600 nm for the following species: organic aerosol (OA), sulfate (SO<inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>), nitrate NO<inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>), ammonium (NH<inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>), and chloride (Cl<inline-formula><mml:math id="M30" display="inline"><mml:msup><mml:mi/><mml:mo>-</mml:mo></mml:msup></mml:math></inline-formula>). The AMS was operated in 1 Hz fast mass spectral (MS) mode, with final data averaged to 30 s time resolution. A fast cloud droplet probe (FCDP; SPEC Inc.; Glienke and Mei, 2020; SPEC 2013, 2019) supplied size distribution data for cloud droplets and aerosol particles with diameters of 1.5–50 <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m. Data from the FCDP and a two-dimensional stereo cloud probe (2D-S10; Spec Inc.; Lawson et al., 2006) were integrated to create a cloud buffer product (SPEC Inc.) that flags when the P-3 flew through clouds as well as the 3 s before and after each pass through a cloud.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e660">Summary of datasets used in this study. “n/a” stands for not applicable.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.95}[.95]?><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="3.5cm"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="3.5cm"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="1.5cm"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="1.5cm"/>
     <oasis:colspec colnum="5" colname="col5" align="justify" colwidth="2cm"/>
     <oasis:colspec colnum="6" colname="col6" align="justify" colwidth="3cm"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Instrument/source</oasis:entry>
         <oasis:entry colname="col2">Measured/retrieved<?xmltex \hack{\hfill\break}?>parameter and units</oasis:entry>
         <oasis:entry colname="col3">Size range</oasis:entry>
         <oasis:entry colname="col4">Temporal<?xmltex \hack{\hfill\break}?>resolution</oasis:entry>
         <oasis:entry colname="col5">Spatial<?xmltex \hack{\hfill\break}?>resolution</oasis:entry>
         <oasis:entry colname="col6">Reference</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Vaisala RD-41 dropsondes</oasis:entry>
         <oasis:entry colname="col2">Relative humidity (%)</oasis:entry>
         <oasis:entry colname="col3">n/a</oasis:entry>
         <oasis:entry colname="col4">0.25 s</oasis:entry>
         <oasis:entry colname="col5">N/A</oasis:entry>
         <oasis:entry colname="col6">Vaisala (2020)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">TSI-3756 CPC<inline-formula><mml:math id="M37" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Particle number<?xmltex \hack{\hfill\break}?>concentration (cm<inline-formula><mml:math id="M38" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> nm</oasis:entry>
         <oasis:entry colname="col4">1 s</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M40" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100 m (horizontal)<inline-formula><mml:math id="M41" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">e.g., Kangasluoma and<?xmltex \hack{\hfill\break}?>Attoui (2019)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">TSI-3563 nephelometers*</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M42" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> (550 nm) (unitless)</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">5000</mml:mn></mml:mrow></mml:math></inline-formula> nm</oasis:entry>
         <oasis:entry colname="col4">1 s</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M44" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100 m<?xmltex \hack{\hfill\break}?>(horizontal)<inline-formula><mml:math id="M45" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">Anderson and<?xmltex \hack{\hfill\break}?>Ogren (1998)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Aerodyne HR-ToF-AMS<inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Nonrefractory chemically<?xmltex \hack{\hfill\break}?>resolved mass<?xmltex \hack{\hfill\break}?>concentration (<inline-formula><mml:math id="M47" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M48" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3">60–600 nm</oasis:entry>
         <oasis:entry colname="col4">30 s</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M49" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3000 m (horizontal<inline-formula><mml:math id="M50" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">Canagaratna et<?xmltex \hack{\hfill\break}?>al. (2007); Decarlo et<?xmltex \hack{\hfill\break}?>al. (2006)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SPEC Inc. FCDP*</oasis:entry>
         <oasis:entry colname="col2">Aerosol size distribution (L<inline-formula><mml:math id="M51" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3">1.5–50 <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m</oasis:entry>
         <oasis:entry colname="col4">1 s</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M53" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100 m (horizontal)<inline-formula><mml:math id="M54" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">Glienke and<?xmltex \hack{\hfill\break}?>Mei (2020);<?xmltex \hack{\hfill\break}?>SPEC (2013, 2019)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">SPEC Inc. cloud buffer</oasis:entry>
         <oasis:entry colname="col2">Flag indicating periods<?xmltex \hack{\hfill\break}?>when aircraft was in a<?xmltex \hack{\hfill\break}?>cloud as well as the 3 s<?xmltex \hack{\hfill\break}?>before and after<?xmltex \hack{\hfill\break}?>passing through each cloud</oasis:entry>
         <oasis:entry colname="col3">n/a</oasis:entry>
         <oasis:entry colname="col4">1 s</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M55" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100 m (horizontal)<inline-formula><mml:math id="M56" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">Lawson et al. (2006)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Inlet flag</oasis:entry>
         <oasis:entry colname="col2">Flag indicating whether<?xmltex \hack{\hfill\break}?>sampling occurred through<?xmltex \hack{\hfill\break}?>a counterflow virtual<?xmltex \hack{\hfill\break}?>impactor<inline-formula><mml:math id="M57" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> (CVI) inlet or<?xmltex \hack{\hfill\break}?>an isokinetic inlet<inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">n/a</oasis:entry>
         <oasis:entry colname="col4">1 s</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M59" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100 m (horizontal)<inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">Shingler et al. (2012)<?xmltex \hack{\hfill\break}?>(CVI inlet);<?xmltex \hack{\hfill\break}?>McNaughton et<?xmltex \hack{\hfill\break}?>al. (2007)<?xmltex \hack{\hfill\break}?>(isokinetic inlet);</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">HSRL-2</oasis:entry>
         <oasis:entry rowsep="1" colname="col2">Mixed-layer height (m)</oasis:entry>
         <oasis:entry colname="col3">n/a</oasis:entry>
         <oasis:entry colname="col4">60 s</oasis:entry>
         <oasis:entry rowsep="1" colname="col5">6000 m (horizontal)<inline-formula><mml:math id="M61" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry rowsep="1" colname="col6">Scarino et al. (2014);</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Cumulative and total AOT <?xmltex \hack{\hfill\break}?></oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5">15 m (vertical)</oasis:entry>
         <oasis:entry colname="col6">Hair et al. (2008); <?xmltex \hack{\hfill\break}?>Burton et al. (2018)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NAAPS-RA</oasis:entry>
         <oasis:entry rowsep="1" colname="col2">Speciated mass concentrations (ABF<inline-formula><mml:math id="M62" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula>, smoke, dust,<?xmltex \hack{\hfill\break}?>sea salt) (<inline-formula><mml:math id="M63" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M64" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3">n/a</oasis:entry>
         <oasis:entry colname="col4">6 h</oasis:entry>
         <oasis:entry colname="col5">1<inline-formula><mml:math id="M65" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M66" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M67" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula><?xmltex \hack{\hfill\break}?>(horizontal) <?xmltex \hack{\hfill\break}?>terrain-following</oasis:entry>
         <oasis:entry colname="col6">Lynch et al. (2016)<?xmltex \hack{\hfill\break}?>and references therein</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry rowsep="1" colname="col2">Pressure layer<?xmltex \hack{\hfill\break}?>thickness (m)</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5">coordinate system with 25 layers (vertical)</oasis:entry>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Relative humidity (%)</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><table-wrap-foot><p id="d1e663">*Data were only used if they were collected during isokinetic sampling and when the cloud buffer product indicated clear conditions. <inline-formula><mml:math id="M32" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula> Based on a nominal aircraft speed of 100 m s<inline-formula><mml:math id="M33" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. <inline-formula><mml:math id="M34" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> Brechtel Manufacturing Inc. Model 1204 CVI . <inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula> University of Hawaii/Clarke-style shrouded solid diffuser inlet. <inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula> “ABF” stands for anthropogenic and biogenic fine species.</p></table-wrap-foot></table-wrap>

      <p id="d1e1332">When the aircraft entered clouds, a counterflow virtual impactor (CVI) inlet (Shingler et al., 2012) was used to sample
droplet residual particles. In cloud-free air, ambient aerosol particles
were sampled continuously through an isokinetic Clarke-style shrouded solid
diffuser inlet (McNaughton et al., 2007). Data used in
this study were filtered to isolate those collected during isokinetic
sampling and when the cloud buffer indicated clear conditions.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>HSRL-2 retrievals and derived products</title>
      <p id="d1e1344">A HSRL-2 (Hair et al., 2008; Burton et al., 2018) retrieved total AOT as
well as cumulative AOT (15 m vertical resolution) at 355 and 532 nm, as well
as integrated backscatter and retrieved extinction at 1064 nm. Cumulative
AOT is reported so that values increase as altitude decreases. Thus, the
cumulative AOT reported at the lowest altitude should match the total AOT
value for that particular column retrieval.</p>
      <p id="d1e1347">This study focuses on retrievals at 532 nm to provide the most impactful
model evaluation. As will be discussed in Sect. 2.4, NAAPS-RA is a bulk
model that can output AOT at over 2 dozen wavelengths. Functionally,
these wavelengths are coupled to 550 nm, which is a widely used wavelength
in aerosol modeling and satellite remote sensing. Although we calculate
model outputs at 532 nm, key findings from this work are still relevant to
NAAPS-RA simulations at 550 nm. Given this and that extinction and AOT are
retrieved with the HSRL-2, we focus on the benchmark green wavelength in
this study.</p>
      <p id="d1e1350">The HSRL-2 mixed-layer-height (MLH) product is derived from HSRL-2
backscatter profiles at 532 nm using the method described in Scarino et al. (2014). We averaged all
available MLHs for each RF and proceeded to use these average heights (Table S2) in several ways throughout the rest of the analysis. For example, the
lowest average MLH (<inline-formula><mml:math id="M68" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 500 m) was used to filter retrieved and
simulated extinction coefficients to evaluate NAAPS-RA performance strictly
within the ML across the campaign. Additionally, we used the average MLH for
each case study to isolate airborne measurements made exclusively within
this layer. The case studies will be discussed in greater detail below.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>NAAPS-RA AOT and extinction products</title>
      <p id="d1e1368">In response to the pressing need for an aerosol reanalysis product with
widespread spatial and temporal coverage, the U.S. Naval Research Laboratory
developed NAAPS with multiple configurations for operations, reanalyses
(Lynch et al., 2016, and references therein used here), and ensembles (Rubin et al., 2016). The reanalysis
version, NAAPS-RA, is an aerosol model intended for basic research including
the creation of long and consistent data records. NAAPS-RA is an offline
chemical transport model with a 6 h temporal resolution, 1<inline-formula><mml:math id="M69" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M70" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M71" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> spatial resolution, 25 vertical levels based on a
terrain-following sigma-pressure coordinate system, and meteorological
fields that are driven by the Navy Global Environmental Model (NAVGEM; Hogan et al., 2014). Lynch
et al. (2016) provide a full description of NAAPS-RA, but in short it is a
chemical transport model simulating the four-dimensional distribution of
four externally mixed aerosol species, dust, sea salt (both of which are
dominated by coarse-mode (<inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) particles), open biomass
burning smoke, and a combined anthropogenic and biogenic fine (ABF) species,
that incorporates secondarily produced species such as sulfate and organics
(both of which are dominated by fine-mode particles [(<inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m)). Aerosol properties for each species are defined in bulk and specific
size distributions are not considered.</p>
      <p id="d1e1433">NAAPS-RA optical properties are defined using species-dependent mass
scattering and absorption efficiencies (<inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">scat</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">abs</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, respectively) and the Hänel (1976) formulation
of the light scattering hygroscopic growth function <inline-formula><mml:math id="M78" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>:</p>
      <p id="d1e1465"><disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M79" display="block"><mml:mtable rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mrow><mml:mi mathvariant="normal">scat</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mrow><mml:mi mathvariant="normal">scat</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">λ</mml:mi></mml:mfenced><mml:msub><mml:mi>f</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced close="]" open="["><mml:mrow><mml:mi mathvariant="normal">RH</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M80" display="block"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced close="]" open="["><mml:mrow><mml:mi mathvariant="normal">RH</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msup><mml:mfenced close="]" open="["><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">100</mml:mn><mml:mo>-</mml:mo><mml:mi mathvariant="normal">RH</mml:mi></mml:mrow><mml:mrow><mml:mn mathvariant="normal">100</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">RH</mml:mi><mml:mi>o</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msup></mml:mrow></mml:math></disp-formula>

            <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M81" display="block"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mrow><mml:mi mathvariant="normal">abs</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mrow><mml:mi mathvariant="normal">abs</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">λ</mml:mi></mml:mfenced></mml:mrow></mml:math></disp-formula>

            <disp-formula id="Ch1.E4" content-type="numbered"><label>4</label><mml:math id="M82" display="block"><mml:mtable rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mrow><mml:mi mathvariant="normal">ext</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mi>b</mml:mi><mml:mrow><mml:mi mathvariant="normal">scat</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:msub><mml:mi>b</mml:mi><mml:mrow><mml:mi mathvariant="normal">abs</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            <disp-formula id="Ch1.E5" content-type="numbered"><label>5</label><mml:math id="M83" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mo movablelimits="false">∫</mml:mo><mml:msub><mml:mi>b</mml:mi><mml:mrow><mml:mi mathvariant="normal">ext</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfenced><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></disp-formula>

            <disp-formula id="Ch1.E6" content-type="numbered"><label>6</label><mml:math id="M84" display="block"><mml:mrow><mml:mi mathvariant="italic">τ</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mn mathvariant="normal">4</mml:mn></mml:munderover><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>,</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          Here, <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mrow><mml:mi mathvariant="normal">scat</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mrow><mml:mi mathvariant="normal">abs</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msub><mml:mi>b</mml:mi><mml:mrow><mml:mi mathvariant="normal">ext</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are the scattering, absorption, and extinction coefficients, respectively, at a given wavelength (<inline-formula><mml:math id="M88" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>), and <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the mass concentration of species <inline-formula><mml:math id="M90" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>. The horizontal coordinates (<inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:math></inline-formula>) represent the longitudinal and latitudinal dimensionality (m), respectively, of each 1<inline-formula><mml:math id="M92" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M93" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M94" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell, while <inline-formula><mml:math id="M95" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> (m) is the midpoint altitude of a given pressure layer. Each pressure layer has a unique thickness d<inline-formula><mml:math id="M96" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> that increases with altitude. For <inline-formula><mml:math id="M97" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>(RH), RH is the humidified relative humidity, RH<inline-formula><mml:math id="M98" display="inline"><mml:msub><mml:mi/><mml:mi>o</mml:mi></mml:msub></mml:math></inline-formula> is a dry reference relative humidity (30 %), and <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is an empirical species-dependent hygroscopic growth parameter.</p>
      <p id="d1e2042">Vertical integrals then provide the speciated optical depths <inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
which are then added to obtain total optical depth <inline-formula><mml:math id="M101" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula>.
Quality-controlled and assured Moderate Resolution Imaging Spectroradiometer
(MODIS) and Multi-angle Imaging SpectroRadiometer (MISR) AOT data (Zhang
and Reid, 2006; Hyer et al., 2011; Shi et al., 2011) are assimilated through
the Navy Atmospheric Variational Data Assimilation System (NAVDAS) for AOT (NAVDAS-AOT; Zhang et al., 2008) into the model to create a final
reanalysis product. When MODIS AOT data
are assimilated into NAAPS, <inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is adjusted proportionally for
each species. Corrections in <inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are converted to changes in
<inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> using the optical properties for that species and the simulated
meteorological conditions (e.g., RH).</p>
      <p id="d1e2097">Frequent cloud cover over SEA often interferes with satellite retrievals of
AOT for the region. Thus, it is unsurprising that <inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>
quality-controlled and assured MODIS retrievals were assimilated into
NAAPS-RA per 1<inline-formula><mml:math id="M106" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M107" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M108" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell for the region
over the 6-week period relevant to the campaign (Fig. S1 in the Supplement). This was far
fewer assimilations compared to other locations of the world yet consistent
with other regions located along the intertropical convergence zone (ITCZ).
The accuracy of these AOT and extinction simulations can only be determined
by verification with other retrievals (e.g., AOT retrievals from the Aerosol
Robotic Network (AERONET)). For example, uncertainties in AERONET AOT
retrievals are reported as <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula> (Dubovik et al., 2000; Eck et
al., 1999), and so the lowest AOT that NAAPS-RA can accurately represent is
<inline-formula><mml:math id="M110" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.01.</p>
      <p id="d1e2153">As mentioned above, NAAPS-RA can output AOT at multiple wavelengths,
including 450 and 550 nm. To simulate NAAPS-RA AOT and extinction at 532 nm,
we interpolated aerosol optical properties to 532 nm (Table 2) and used
these values in Eqs. (1) and (3).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e2159">Optical properties for the four aerosol types considered in NAAPS-RA at three wavelengths (450/550/532 nm). NAAPS-RA optical properties are defined at 450 and 550 nm, and these were used to interpolate values for 532 nm, which are underlined below. Optical properties are based on the software package OPAC (Optical Properties of Aerosols and Clouds; Hess et al., 1998) at various wavelengths for ABF species, dust, and sea salt. Smoke optical properties are based on Reid et al. (2005). “ABF” stands for anthropogenic and biogenic fine species.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">scat</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>(m<inline-formula><mml:math id="M112" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> g<inline-formula><mml:math id="M113" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="normal">abs</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>(m<inline-formula><mml:math id="M115" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> g<inline-formula><mml:math id="M116" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M117" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">ABF</oasis:entry>
         <oasis:entry colname="col2">4.63/3.13/<underline>3.40</underline></oasis:entry>
         <oasis:entry colname="col3">0.46/0.35/<underline>0.37</underline></oasis:entry>
         <oasis:entry colname="col4">0.5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Dust</oasis:entry>
         <oasis:entry colname="col2">0.50/0.52/<underline>0.52</underline></oasis:entry>
         <oasis:entry colname="col3">0.10/0.07/<underline>0.08</underline></oasis:entry>
         <oasis:entry colname="col4">0</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Smoke</oasis:entry>
         <oasis:entry colname="col2">5.72/3.99/<underline>4.30</underline></oasis:entry>
         <oasis:entry colname="col3">0.65/0.50/<underline>0.53</underline></oasis:entry>
         <oasis:entry colname="col4">0.18</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Sea salt</oasis:entry>
         <oasis:entry colname="col2">1.48/1.41/<underline>1.42</underline></oasis:entry>
         <oasis:entry colname="col3">0.01/0.01/<underline>0.01</underline></oasis:entry>
         <oasis:entry colname="col4">0.46</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS5">
  <label>2.5</label><title>Strategy to evaluate NAAPS-RA performance</title>
<sec id="Ch1.S2.SS5.SSS1">
  <label>2.5.1</label><title>Isolating HSRL-2 data for locations of interest</title>
      <p id="d1e2357">The main objective of this work is to investigate how correcting errors in
simulated RH affects model outputs for AOT and extinction. NAAPS-RA AOT and
extinction simulations were only evaluated for the 1<inline-formula><mml:math id="M118" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M119" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M120" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cells encompassing dropsonde release points (Fig. S2). To
establish the “ground truth” dataset, HSRL-2 retrievals were extracted if
they occurred anywhere within a 1<inline-formula><mml:math id="M121" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M122" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M123" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid
cell containing a dropsonde release. These retrievals were then filtered
using the cloud buffer product to ensure the P-3 was not flying in cloudy
conditions, while the HSRL-2 simultaneously retrieved data from below the
plane. The remaining retrievals were filtered further to isolate retrievals
obtained only when the P-3 was flying at a level altitude so that data were
eliminated if the aircraft was either ascending or descending. Retrievals of
total AOT remaining after these steps comprised the ground truth AOT
dataset. Remaining retrievals of cumulative AOT were filtered one last time
to eliminate cumulative AOT values with anomalously high absolute values.</p>
</sec>
<sec id="Ch1.S2.SS5.SSS2">
  <label>2.5.2</label><title>NAAPS-RA data considerations</title>
      <p id="d1e2419">NAAPS-RA reports simulated values at the center of each 1<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M125" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M126" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell, and these simulations are intended to
represent the average conditions within that grid cell. This is problematic
as the P-3 often only flew through sections of a 1<inline-formula><mml:math id="M127" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M128" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M129" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell, which means the in situ data are not representative
of the entire grid cell. To promote a fair comparison, NAAPS-RA model data
for speciated mass concentrations and RH were interpolated to each location
corresponding to a single HSRL-2 retrieval as well as to each location of a
dropsonde release.</p>
      <p id="d1e2473">NAAPS-RA 532 nm extinction and AOT values were calculated using Eqs. (1)–(4) and (1)–(6), respectively, using the interpolated mass
concentrations, interpolated RH values, and speciated 532 nm optical
properties. For each AOT calculation, the lower bound of the integral in
Eq. (5) corresponded to the lower range of the HSRL-2 cumulative AOT
product (<inline-formula><mml:math id="M130" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 40 m) while the upper bound corresponded to the
highest altitude at which the HSRL-2 cumulative AOT product was reported at
that location. The P-3 did not typically fly above 8 km, and HSRL-2
retrievals of cumulative AOT were typically unavailable for altitudes above
6 km. Thus, these calculated NAAPS-RA AOTs and extinction coefficients are
only representative of the model's 2nd–16th pressure layers.</p>
</sec>
<sec id="Ch1.S2.SS5.SSS3">
  <label>2.5.3</label><title>Spatial averaging</title>
      <p id="d1e2491">Remotely sensed data were averaged first vertically and then horizontally to
match the resolution of the NAAPS-RA model. HSRL-2 cumulative AOT values
falling within the altitude bounds of each pressure layer were grouped. The
cumulative AOT at the top of the pressure layer was subtracted from the
value reported at the bottom of the pressure layer to establish a “slab”
AOT for that pressure layer. This slab AOT was divided by the thickness of
the pressure layer to achieve an extinction coefficient representative of
that layer and for that specific vertical column. Calculated extinction
coefficients for the same pressure layer were combined across all available
column retrievals within the same 1<inline-formula><mml:math id="M131" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M132" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M133" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid
cell and averaged to arrive at a single vertical profile of extinction
representing that 1<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M135" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell.
Interpolated NAAPS-RA extinction coefficients within this same grid cell
were horizontally averaged in an identical fashion (e.g., all interpolated
coefficients for the first pressure layer were combined and averaged). The
result was an average ground truth HSRL-2 extinction profile and NAAPS-RA
extinction profile for the same 1<inline-formula><mml:math id="M137" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M138" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M139" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid
cell that could then be compared. All HSRL-2 total AOT values available
within a grid cell were averaged to produce a ground truth AOT for that grid
cell. Calculated NAAPS-RA AOT values were also averaged to arrive at a
single simulated AOT value representative of the same portion of the grid
cell.</p>
      <p id="d1e2570">The number of dropsondes released within a single 1<inline-formula><mml:math id="M140" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M141" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M142" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell ranged from one to six. All dropsonde data available
within a grid cell were combined, grouped, and averaged to produce a single
RH value corresponding to each NAAPS-RA pressure layer. NAAPS-RA RH profiles
interpolated to each dropsonde release were also combined and averaged to
arrive at a single RH profile that could then be compared to the averaged in
situ profile.</p>
</sec>
<sec id="Ch1.S2.SS5.SSS4">
  <label>2.5.4</label><title>Comparison and model refinement</title>
      <p id="d1e2606">To explore NAAPS-RA performance as a function of altitude, we compare
extinction coefficients within three altitude layers: (i) 40–500 m, (ii) 500–1500 m, and (iii) above 1500 m. The first altitude layer indicates
how well NAAPS-RA simulates extinction within the ML (as discussed in
Sect. 2.3), the second informs how well NAAPS-RA simulates the transition
from the ML to the free troposphere (FT), and the third altitude layer
focuses on model performance exclusively in the FT.</p>
      <p id="d1e2609">We begin by comparing HSRL-2 and NAAPS-RA extinction coefficients and AOT
when NAAPS-RA values were calculated with modeled RHs to establish a basic
understanding of model performance without any substitutions of in situ
data. The average dropsonde RH profile for each grid cell was then used to
recalculate all NAAPS-RA extinction coefficients and AOT values within that
same 1<inline-formula><mml:math id="M143" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M144" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M145" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell. The recalculated values
are compared to the same HSRL-2 retrievals for that grid cell to understand
how correcting errors in modeled RH affected NAAPS-RA simulations for AOT
and extinction. The coefficient of determination (<inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>), bias, relative
bias, root mean square error (RMSE), and normalized RMSE (NRMSE) are used to
evaluate all NAAPS-RA simulations using the following formulations:</p>
      <p id="d1e2648"><disp-formula id="Ch1.E7" content-type="numbered"><label>7</label><mml:math id="M147" display="block"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mfenced close="]" open="["><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mi>N</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mfrac></mml:mstyle><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:munderover><mml:mfenced close="]" open="["><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>X</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi>X</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>X</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi>X</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mfenced open="[" close="]"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>Y</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi>Y</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>Y</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi>Y</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></disp-formula>

              <disp-formula id="Ch1.E8" content-type="numbered"><label>8</label><mml:math id="M148" display="block"><mml:mrow><mml:mi mathvariant="normal">bias</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:munderover><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>Y</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi>X</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mi>N</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula>

              <disp-formula id="Ch1.E9" content-type="numbered"><label>9</label><mml:math id="M149" display="block"><mml:mrow><mml:mi mathvariant="normal">relative</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">bias</mml:mi><mml:mo>=</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="normal">bias</mml:mi><mml:mover accent="true"><mml:mi>X</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula>

              <disp-formula id="Ch1.E10" content-type="numbered"><label>10</label><mml:math id="M150" display="block"><mml:mrow><mml:mi mathvariant="normal">RMSE</mml:mi><mml:mo>=</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msqrt><mml:mrow><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:munderover><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:msub><mml:mi>Y</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi>X</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mi>N</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:msqrt></mml:mrow></mml:math></disp-formula>

              <disp-formula id="Ch1.E11" content-type="numbered"><label>11</label><mml:math id="M151" display="block"><mml:mrow><mml:mi mathvariant="normal">NRMSE</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="normal">RMSE</mml:mi><mml:mover accent="true"><mml:mi>X</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M152" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M153" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> are a set of in situ observations and NAAPS-RA
simulations, respectively, for the same parameter (e.g., AOT, extinction,
RH); N is the total number of points for a given comparison; and <inline-formula><mml:math id="M154" display="inline"><mml:mover accent="true"><mml:mi>X</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>
and <inline-formula><mml:math id="M155" display="inline"><mml:mover accent="true"><mml:mi>Y</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> are the mean of sets <inline-formula><mml:math id="M156" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M157" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula>, respectively.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS6">
  <label>2.6</label><title>Case studies</title>
      <p id="d1e2958">As mentioned above, the Philippines region is influenced by a range of
aerosol types (Hilario et al., 2021). Aerosol models,
such as NAAPS-RA, are heavily parameterized and are often challenged by the
properties of individual air masses. To provide context to the bulk
comparisons, four case studies were examined to assess model sensitivity and
performance across a diverse range of aerosol conditions. We focus on model
performance in the ML for a single 1<inline-formula><mml:math id="M158" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M159" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M160" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid
cell for each of the four case study flights. We assume fine and coarse
particle mass concentrations and particle microphysical properties (i.e.,
<inline-formula><mml:math id="M161" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>) are uniform at all altitudes within the ML, which allows us to
bypass the issue that vertical profiles of these parameters were infrequent
during CAMP<inline-formula><mml:math id="M162" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>Ex.</p>
      <p id="d1e3002">Airborne observations from the AMS, FCDP, and nephelometers were filtered to
isolate data collected below the average MLH for each case study flight. We
identified the 1<inline-formula><mml:math id="M163" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M164" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M165" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell with the most
available data for these variables, and this became the grid cell used to
represent a particular case study. These flights and their respective grid
cells are introduced below. Note that the monsoonal transition occurred from
23–24 September 2019.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e3032">Relevant spatial information for the four case studies including
<bold>(a)</bold> flight tracks (black lines), grid cells selected to represent each case study (black squares), and locations where HSRL-2 retrievals were available (red crosses) and dropsondes were released (yellow stars) within the selected grid cells. Flight tracks are colored by particle number
concentrations (i.e., condensation nuclei (CN)) observed at altitudes within
the ML. Simulations of NAAPS-RA fine aerosol optical depth (AOD) and 925 mbar wind speed are shown for the 6 h periods most relevant to <bold>(b)</bold> Case I on 5 October 2019 (RF19), <bold>(c)</bold> Case II on 15 September 2019 (RF9), <bold>(d)</bold> Case III on 16 September 2019 (RF10), and <bold>(e)</bold> Case IV on 1 October 2019 (RF17). White coloring indicates a fine AOD of <inline-formula><mml:math id="M166" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0. Red squares indicate the 1<inline-formula><mml:math id="M167" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M168" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M169" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell relevant to each case study (a black square is used for Case II).</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f01.png"/>

        </fig>

<sec id="Ch1.S2.SS6.SSS1">
  <label>2.6.1</label><title>Case study descriptions</title>
      <p id="d1e3097"><list list-type="order">
              <list-item>

      <p id="d1e3102"><italic>Case I: background marine (RF19: 5 October 2019)</italic>. The location and relatively low observed and simulated aerosol particle
loadings indicate the P-3 sampled a relatively clean marine environment as
compared to the rest of the campaign during this flight and within the
selected grid cell (Fig. 1).</p>
              </list-item>
              <list-item>

      <p id="d1e3110"><italic>Case II: biomass burning smoke (RF9: 15 September 2019)</italic>. Flight notes, photographs, and chemistry from RF9 reveal exceptionally
hazy/smoky conditions. The location and timing of this flight and selected
grid cell were conducive to sampling smoke transported from the MC that had
been aging for 2–3 d (Fig. S3).</p>
              </list-item>
              <list-item>

      <p id="d1e3118"><italic>Case III: biomass burning smoke with additional aging (RF10: 16 September 2019)</italic>. The P-3 sampled the same air mass encountered during RF9 with the important
difference that the smoke had aged an additional <inline-formula><mml:math id="M170" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 24 h as
it advected from the Sulu Sea into the Philippine Sea.</p>
              </list-item>
              <list-item>

      <p id="d1e3133"><italic>Case IV: Asian pollution (RF17: 1 October 2019)</italic>. The aircraft sampled relatively high concentrations of SO<inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>
(<inline-formula><mml:math id="M172" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 8 <inline-formula><mml:math id="M173" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M174" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; measured with the AMS) in the ML
during this flight. The location of the flight track and selected grid cell
in relation to simulated wind patterns at 925 hPa make it reasonable to
assume the enhanced SO<inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> was from East Asian outflow (e.g.,
Lim et al., 2018; Hilario et al., 2021).</p>
              </list-item>
            </list></p>
</sec>
<sec id="Ch1.S2.SS6.SSS2">
  <label>2.6.2</label><title>Case study comparison and model refinement</title>
      <p id="d1e3205">Mixed-layer AOT (AOT<inline-formula><mml:math id="M176" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula>) is the metric used to evaluate NAAPS-RA
performance for the case study analysis. The HSRL-2 cumulative AOT value at
the altitude closest to the average MLH for each case study flight was
subtracted from the cumulative AOT value at the lowest altitude (40 m) to
determine AOT<inline-formula><mml:math id="M177" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> for each retrieval available within the case study
1<inline-formula><mml:math id="M178" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M179" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M180" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell. The average of all retrieved
AOT<inline-formula><mml:math id="M181" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> values became the ground truth AOT<inline-formula><mml:math id="M182" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> for a given case study.
NAAPS-RA extinction coefficients calculated with modeled RHs (Sect. 2.5.2)
were used in Eq. (5) to calculate AOT<inline-formula><mml:math id="M183" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> at all locations coinciding
with HSRL-2 retrievals. In these integrals, the lower bound was again 40 m,
while the upper bound was the average MLH for a given case study flight. The
calculated AOT<inline-formula><mml:math id="M184" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> values were averaged to produce a single NAAPS-RA
AOT<inline-formula><mml:math id="M185" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> when only modeled parameters were used. This procedure was
repeated with the NAAPS-RA extinction coefficients calculated using
dropsonde RHs (Sect. 2.5.4) to arrive at a NAAPS-RA AOT<inline-formula><mml:math id="M186" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> when only
errors in model RH had been corrected.</p>
      <p id="d1e3306">Next, observed <inline-formula><mml:math id="M187" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values and modeled RHs were used in Eq. (2) to
calculate NAAPS-RA AOT<inline-formula><mml:math id="M188" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> values when only <inline-formula><mml:math id="M189" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> was corrected. To
account for the range of in situ <inline-formula><mml:math id="M190" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values observed during a given
case study, the mean <inline-formula><mml:math id="M191" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> as well as <inline-formula><mml:math id="M192" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values 1 standard
deviation above and below the mean were used in Eq. (2), resulting in a
range of NAAPS-RA AOT<inline-formula><mml:math id="M193" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> outputs. Normally, NAAPS-RA uses a
species-dependent <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> value in Eq. (2) to calculate <inline-formula><mml:math id="M195" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>(RH) for
each of the four aerosol types. Here, we use the same in situ <inline-formula><mml:math id="M196" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> in
Eq. (2) for all four aerosol types. A mean mass-weighted NAAPS-RA <inline-formula><mml:math id="M197" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> was calculated for each case study using average mass fractions of ABF species,
dust, smoke, and sea salt particles in the ML multiplied by their respective
<inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> value. Comparing the NAAPS-RA mean mass-weighted <inline-formula><mml:math id="M199" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>
to statistics for the in situ <inline-formula><mml:math id="M200" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> observations provides insight into
how accurately the model simulated particle hygroscopicity for each case
study.</p>
      <p id="d1e3421">Observed <inline-formula><mml:math id="M201" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> and dropsonde RH values were then both used in Eq. (2)
to produce NAAPS-RA AOT<inline-formula><mml:math id="M202" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> values when the entire <inline-formula><mml:math id="M203" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>(RH) term had been
corrected. After correcting this term, remaining discrepancies between
modeled and retrieved AOT<inline-formula><mml:math id="M204" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> values are presumably due to errors in
simulated particle mass concentrations and/or the mass scattering and
absorption efficiencies assigned to each particle type.</p>
      <p id="d1e3456">It is challenging to evaluate simulated mass concentrations of ABF species, dust, smoke, and sea salt particles and their respective optical properties
because these particle type categories do not align with what was measured
on the aircraft. For example, the AMS can quantify mass concentrations of
organics, but it is difficult to determine the fraction of these organics
associated with smoke versus the fraction associated with anthropogenic and/or biogenic emissions (which NAAPS-RA would place in the ABF category). To bypass this issue, we only compared simulated fine and coarse particle mass concentrations to in situ observations. NAAPS-RA fine mass was calculated as the sum of ABF and smoke mass, while coarse mass was calculated as the sum of dust and sea salt mass. The method to derive in situ fine and coarse particle mass concentrations is described below.</p>
</sec>
<sec id="Ch1.S2.SS6.SSS3">
  <label>2.6.3</label><title>In situ mass concentrations</title>
      <p id="d1e3467">Eqs. (1) and (3) show that dry particle mass concentrations are an
important component in simulating particle light extinction. Fine and coarse
in situ mass concentrations were calculated to compare to those simulated by
NAAPS-RA in the ML for each case study. In situ fine mass was characterized
as the sum of AMS mass concentrations for OA, SO<inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>,
NO<inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, NH<inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, and Cl<inline-formula><mml:math id="M208" display="inline"><mml:msup><mml:mi/><mml:mo>-</mml:mo></mml:msup></mml:math></inline-formula>. Previous studies have examined
the ability of the AMS to capture total fine particle mass by comparing to
fine mass concentrations derived with other instruments, such as
particle-into-liquid samplers (PILSs; e.g., Takegawa et al.,
2005), optical particle counters (OPCs; e.g., Middlebrook et al., 2012, and references
therein), and tapered element oscillating microbalances (TEOMs; e.g.,
Salcedo et al., 2006). AMS collection efficiency (CE) is adjusted to reach
mass closure with the aforementioned and related instruments, with a CE of
0.5 being most common (Middlebrook et al., 2012, and
references therein). AMS CE was set to 1 for the campaign based on
comparison with coincident PILS measurements. This, in conjunction with the
instrument's insensitivity to submicron dust and sea salt, indicates AMS
mass concentrations represent a lower limit of true dry fine mass.</p>
      <p id="d1e3518">Coarse particle mass concentrations were calculated using FCDP size
distributions and assuming all coarse particles were sea salt. In support of
this, Hilario et al. (2020a) found crustal-marine particles to contribute
57 % of the coarse particle mass (1.15–10 <inline-formula><mml:math id="M209" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m) in the South China
Sea in late September. As the FCDP sampled particles under
ambient conditions, the dry particle diameter (<inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) range was calculated
for each bin using the procedure described in Lewis and Schwartz
(2004; see pages 54–55). Specifically, equations modeling the
deliquescence growth curve for sea salt were used to determine relationships
between the radii of sea salt particles at ambient RH (<inline-formula><mml:math id="M211" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>), at 80 % RH
(<inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), and in dry conditions (<inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">dry</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>):</p>
      <p id="d1e3569"><disp-formula specific-use="gather" content-type="numbered"><mml:math id="M214" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E12"><mml:mtd><mml:mtext>12</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>r</mml:mi><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">0.54</mml:mn><mml:mrow><mml:msup><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi mathvariant="normal">RH</mml:mi></mml:mrow></mml:mfenced><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:mfrac></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">for</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">RH</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">93</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E13"><mml:mtd><mml:mtext>13</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>r</mml:mi><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">0.67</mml:mn><mml:mrow><mml:msup><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi mathvariant="normal">RH</mml:mi></mml:mrow></mml:mfenced><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">4</mml:mn></mml:mfrac></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">for</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">RH</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">93</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E14"><mml:mtd><mml:mtext>14</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi>r</mml:mi><mml:mi mathvariant="normal">dry</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:msub></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula></p>
      <p id="d1e3716">For each FCDP size distribution, radii marking the edges of each size bin
were set equal to <inline-formula><mml:math id="M215" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula>, while airborne meteorological data provided
temporally coincident ambient RH values. The dry size distributions were
then integrated using the density of sea salt (2.20 g cm<inline-formula><mml:math id="M216" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>;
Seinfeld and Pandis, 2016) to arrive at total dry coarse particle mass
concentration.</p>
      <p id="d1e3739">There are several uncertainties associated with quantifying coarse mass this
way. First, this correction is very sensitive at RH <inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mo>∼</mml:mo></mml:mrow></mml:math></inline-formula> 90 %, where sea salt exhibits large growth factors (e.g., Lewis and Schwartz, 2004). RHs above this threshold were common in the ML throughout the campaign (as will be shown in Sect. 3.2). The resulting large differences between ambient and dry particle radii corresponded to even larger corrections for dry particle volume and, therefore, dry particle mass. Additionally, there are known challenges in using OPCs (such as the FCDP) to accurately quantify coarse particle mass concentrations. The FCDP assumes the refractive index of water to derive sizes for all particles it samples, which introduces error when particles are not predominantly liquid. However, it is inconclusive as to whether coarse mass concentrations derived from OPCs tend to be negatively or positively biased. For example, Reid et al. (2003, 2006) found coarse-mode OPCs to overestimate the size of coarse particles (e.g., sea salt and dust), while other works have found OPCs to underestimate coarse mass concentrations (Kulkarni and Baron, 2011; Burkart et al., 2010). Our
derived fine and coarse masses are still useful in roughly evaluating the
corresponding NAAPS-RA simulations, but this analysis is highly preliminary
and requires further investigation.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>AOT and extinction comparison using NAAPS-RA RHs</title>
      <p id="d1e3769">Over the course of 19 RFs, the P-3 sampled a wide variety of aerosol and
meteorological conditions, which provides an opportunity to evaluate the
model against a variety of atmospheric conditions. Air masses and aerosol
features encountered include both clean and smoky conditions over the Sulu
Sea (RFs 4 and 9, respectively), relatively clean conditions as well as aged
smoke over the Western Pacific (RFs 19 and 10, respectively), East Asian
outflow (RFs 11, 13, 14, and 17), shipping emissions (e.g., RF16), emissions
from a coal-fired power plant (RF8), and brief samplings over the Mayon
Volcano (RF10). The aircraft also encountered land breezes, cold pools,
convective cells, confluence and convergence lines, and convective outflow bands
from a tropical cyclone, as well as fair weather.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e3774">Comparison between simulated (NAAPS-RA) and retrieved (HSRL-2)
(<bold>a</bold> and <bold>b</bold>) 532 nm aerosol optical thickness (AOT) as well as 532 nm extinction coefficients (<bold>c</bold> and <bold>d</bold>) between 40–500 m, (<bold>e</bold> and <bold>f</bold>) between 500–1500 m, and (<bold>g</bold> and <bold>h</bold>) above 1500 m. Left-hand panels are for NAAPS-RA simulations using modeled relative humidities (RHs), and right-hand panels are for simulations using dropsonde RHs. Linear fits are indicated with red lines, <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> lines are shown as dotted lines, and the color bar indicates the number of points falling in each bin. Where bias and RMSE are reported, the first and second numbers are the absolute and relative values, respectively.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f02.png"/>

        </fig>

      <p id="d1e3820">Overall, NAAPS-RA displays good agreement with HSRL-2 retrievals for AOT
(<inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.78, relative bias <inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> %, NRMSE <inline-formula><mml:math id="M221" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 48 %; Fig. 2).
However, it is worth noting that there is scatter between observed and
simulated AOT at low AOT where NAAPS-RA can be off by a factor of 2 to
3 in some cases. Extinction coefficient analyses provide insight into
the model's performance in the vertical dimension. NAAPS-RA shows the best
agreement with HSRL-2 retrievals for extinction within the first two
altitude layers (i.e., from 40–500 m (<inline-formula><mml:math id="M222" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.80, relative bias <inline-formula><mml:math id="M223" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3 %, NRMSE <inline-formula><mml:math id="M224" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 47 %) and from 500–1500 m (<inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.81, relative
bias <inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> %, NRMSE <inline-formula><mml:math id="M227" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 53 %)). A lower <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> value (0.39) and higher
NRMSE (118 %) indicate agreement decreases above 1500 m, but the relative
bias (<inline-formula><mml:math id="M229" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:math></inline-formula> %) is similar to other altitude layers. Although agreement
appears to decrease, absolute differences between simulated and retrieved
extinction coefficients are not necessarily larger above 1500 m than
differences at lower altitudes (Fig. S4).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e3939">Comparison between simulated (NAAPS-RA) and measured
(dropsonde) RH <bold>(a)</bold> for all altitudes, <bold>(b)</bold> below 500 m, <bold>(c)</bold> between 500–1500 m, and <bold>(d)</bold> above 1500 m. Linear fits are indicated with red lines, <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>
lines are shown as dotted lines, and the color bar indicates the number of
points falling in each bin. Where bias and RMSE are reported, the first and
second numbers are the absolute and relative values, respectively.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f03.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>AOT and extinction comparison using dropsonde RHs</title>
      <p id="d1e3982">We expected to see noticeable changes in extinction agreement after
substituting dropsonde RHs (i) due to poor agreement between NAAPS-RA RHs
and dropsonde RHs at all altitudes (<inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.56, relative bias <inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> %, NRMSE <inline-formula><mml:math id="M233" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 18 %; Fig. 3) and (ii) due to the humid environment and
exponential increase in <inline-formula><mml:math id="M234" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>(RH) at high RH (Eq. 2). For example, Beyersdorf et al. (2016) found variability in
RH to cause up to 62 % of the spatial variability and 95 % of the
diurnal variability in ambient extinction on days with RH <inline-formula><mml:math id="M235" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">60</mml:mn></mml:mrow></mml:math></inline-formula> % at a location on the United States east coast.</p>
      <p id="d1e4034">Interestingly, agreement does not improve when dropsonde RHs were used to
recalculate NAAPS-RA simulations for AOT (<inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.77, relative bias
<inline-formula><mml:math id="M237" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 4 %, NRMSE <inline-formula><mml:math id="M238" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 49 %) and extinction for altitudes (i) between 40–500 m (<inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.78, relative bias <inline-formula><mml:math id="M240" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 12 %, NRMSE <inline-formula><mml:math id="M241" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 51 %), (ii) between 500–1500 m (<inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.78, relative bias <inline-formula><mml:math id="M243" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2 %, NRMSE <inline-formula><mml:math id="M244" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 56 %), and (iii) above 1500 m (<inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.44, relative bias <inline-formula><mml:math id="M246" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 4 %,
NRMSE <inline-formula><mml:math id="M247" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 117 %). At first, this result might seem puzzling since NAAPS-RA
RHs show poor agreement with dropsonde RHs values in each of these altitude
layers (<inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.16, 0.19, and 0.48; relative bias <inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> %, <inline-formula><mml:math id="M250" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:math></inline-formula> %, and
<inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> %; NRMSE <inline-formula><mml:math id="M252" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 9 %, 16 %, and 25 % for altitudes below 500 m, 500–1500 m, and <inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> m, respectively). However, biases in NAAPS-RA
extinction and AOT simulations move in a positive direction when dropsonde
RHs are used, which is in agreement with the fact that NAAPS-RA RH
simulations are negatively biased in all altitude layers.</p>
      <p id="d1e4210">Shifts in extinction bias provide evidence that NAAPS-RA AOT and extinction
simulations are affected by corrections in RH. Agreement between simulated
and retrieved AOT and extinction may appear insensitive to changes in RH for
three reasons. First, errors in simulated mass concentrations and/or
hygroscopicity for each of the four species will affect how NAAPS-RA
simulates water uptake. These types of errors are almost guaranteed to
prevent extinction agreement with observations even when NAAPS-RA is using
corrected RH profiles. Second, cancelations between improvements and
worsenings of agreement may be preventing noticeable changes in bulk
statistics. For example, if NAAPS-RA overestimates extinction in one
pressure layer where it also underestimates RH, then substituting the
dropsonde RH for that pressure layer will <italic>worsen</italic> extinction agreement. If NAAPS-RA
underestimates both extinction and RH in another pressure layer,
substituting the dropsonde RH will <italic>improve</italic> agreement. These types of opposing
changes may explain why biases move in the positive direction, yet <inline-formula><mml:math id="M254" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and RMSE values do not improve when dropsonde RHs are substituted.
Finally, the relationship between changes in extinction and changes in RH is
not linear. For example, pressure layers with dropsonde RHs <inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">90</mml:mn></mml:mrow></mml:math></inline-formula> % typically coincide with instances where NAAPS-RA underestimates RH
(Fig. S5). Due to exponential increases in <inline-formula><mml:math id="M256" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>(RH) at high RH, percent changes
in extinction are almost all positive in these pressure layers and show a
steeply linear relationship (slope <inline-formula><mml:math id="M257" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3.10, <inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.81) with
changes in RH. The slopes of these linear relationships decrease as the
dropsonde RH value for a given pressure layer decreases (slope <inline-formula><mml:math id="M259" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.69,
1.15, and 0.71 when dropsonde RHs are between 80 %–90 %, 60 %–80 %,
and <inline-formula><mml:math id="M260" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">60</mml:mn></mml:mrow></mml:math></inline-formula> %, respectively). In the next section, we investigate
these latter two reasons in greater detail.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e4288">Comparison of simulated (NAAPS-RA) and retrieved (HSRL-2) 532 nm
extinction coefficients when NAAPS-RA underestimated both extinction and RH.
<bold>(a, b)</bold> Comparison when NAAPS-RA simulations were performed using either <bold>(a)</bold>
NAAPS-RA RHs or <bold>(b)</bold> dropsonde RHs for altitudes between 40–500 m and when
final dropsonde RHs are <inline-formula><mml:math id="M261" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> %. <bold>(c, d)</bold> Same as (<bold>a, b,</bold> respectively) except when final dropsonde RHs were <inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> %. <bold>(e, f)</bold> Same as (<bold>a, b,</bold> respectively) except for altitudes between 500–500 m.
<bold>(g, h)</bold> Same as (<bold>e, f,</bold> respectively) except when final dropsonde RHs are
<inline-formula><mml:math id="M263" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> %. <bold>(i, j)</bold> Same as (<bold>a, b,</bold> respectively) except for altitudes
<inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> m. <bold>(k, l)</bold> Same as <bold>(i, j)</bold> except when final dropsonde RHs
are <inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> %. Linear fits are indicated with red lines, <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> lines
are shown as dotted lines, and the color bar shows the number of points
falling in each bin. Where bias and RMSE are reported, the first and second
numbers are the absolute and relative values, respectively.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f04.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e4403">Same as Fig. 4 except when NAAPS-RA overestimated both extinction
and RH. Linear fits are indicated with red lines, <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> lines are shown as
dotted lines, and the color bar shows the number of points falling in each
bin. Where bias and RMSE are reported, the first and second numbers are the
absolute and relative values, respectively.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f05.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Investigating NAAPS-RA extinction sensitivity to changes in RH</title>
      <p id="d1e4432">We divided the extinction comparisons into six categories to understand (1) how opposing changes in extinction agreement within individual pressure
layers may be negating changes in bulk statistics for the AOT and extinction
comparison and (2) how sensitive changes in extinction are to the actual
magnitude of the substituted dropsonde RH. Initial categorization isolated
(i) pressure layers where NAAPS-RA both underestimated extinction and RH,
(ii) pressure layers where NAAPS-RA both overestimated extinction and RH,
and (iii) pressure layers where NAAPS-RA either underestimated extinction
and overestimated RH or overestimated extinction and underestimated RH. Each
of these three categories were divided again based on if the dropsonde RH
for that pressure layer was greater than or less than 80 %.</p>
      <p id="d1e4435">NAAPS-RA extinction displays the best agreement with HSRL-2 retrievals
(<inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, relative bias, and NRMSE values range from 0.80 %–0.96 %, <inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:math></inline-formula> % to
<inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">48</mml:mn></mml:mrow></mml:math></inline-formula> % and 25 %–83 %, respectively; Fig. 4) in pressure layers where
NAAPS-RA extinction and RH are both negatively biased. There are fewer
pressure layers in which NAAPS-RA both overestimates extinction and RH
because the model displays an overall negative bias for RH in all altitude
layers. For these layers, there is poor to moderate agreement for some
categories and relatively good agreement for others (<inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, relative bias,
and NRMSE values range from 0.27 %–0.92 %, 20 %–152 %, and 34 %–175 %,
respectively; Fig. 5). Over a quarter of the pressure layers in this
category are from RF12, which sampled Asian pollution and smoke from biomass
burning in Borneo advecting into the NWTP (average HSRL-2 AOTs ranged from
<inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.20</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.37</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.4</mml:mn></mml:mrow></mml:math></inline-formula> for the 1<inline-formula><mml:math id="M274" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M275" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M276" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cells considered from this flight). It is possible that
NAAPS-RA is overestimating some aspect of the resulting air mass, whether it
be particle hygroscopicity, particle mass concentrations, or a combination
of the two. As discussed above, we do not have the data available to fully
investigate this. When NAAPS-RA has opposing biases in extinction and RH,
agreement is poor for some categories and relatively good for others
(<inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, relative bias, and NRMSE values range from 0.41 %–0.96 %, <inline-formula><mml:math id="M278" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:math></inline-formula> %–200 %, and 22 %–306 %; Fig. 6). Note that different sample sizes should
be taken into consideration when comparing <inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> values between these
categories (e.g., there is a relatively low number of points in the second
category, i.e., pressure layers where NAAPS-RA overestimates both extinction
and RH).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e4565">Same as Fig. 4 except when NAAPS-RA either (i) underestimated
extinction and overestimated RH or (ii) overestimated extinction and
underestimated RH. Linear fits are indicated with red lines, <inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> lines are
shown as dotted lines, and the color bar shows the number of points falling
in each bin. Where bias and RMSE are reported, the first and second numbers
are the absolute and relative values, respectively.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f06.png"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><?xmltex \currentcnt{3}?><label>Table 3</label><caption><p id="d1e4590">Optical properties and summary statistics (means with standard deviations in parentheses) for NAAPS-RA/HSRL-2 comparisons for each case study. AOTML denotes AOT within the mixed layer (ML). Each case study is representative of a single <inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> grid cell that was sampled during the flight indicated. “<inline-formula><mml:math id="M282" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula>” represents the number of data points. “BB” stands for biomass burning. The last two rows of the table report three sets of values where the first, second, and third sets are based on calculations using the <inline-formula><mml:math id="M283" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> value 1 standard deviation below the mean, the mean, and 1 standard deviation above the mean, respectively. Values calculated with the mean <inline-formula><mml:math id="M284" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> value are underlined and in bold font.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">Case I:</oasis:entry>
         <oasis:entry colname="col4">Case II:</oasis:entry>
         <oasis:entry colname="col5">Case III:</oasis:entry>
         <oasis:entry colname="col6">Case IV:</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">background</oasis:entry>
         <oasis:entry colname="col4">BB smoke</oasis:entry>
         <oasis:entry colname="col5">BB smoke w/</oasis:entry>
         <oasis:entry colname="col6">Asian</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">marine</oasis:entry>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5">additional aging</oasis:entry>
         <oasis:entry colname="col6">pollution</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">RF19</oasis:entry>
         <oasis:entry colname="col4">RF9</oasis:entry>
         <oasis:entry colname="col5">RF10</oasis:entry>
         <oasis:entry colname="col6">RF17</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">HSRL-2</oasis:entry>
         <oasis:entry colname="col2">AOT</oasis:entry>
         <oasis:entry colname="col3">0.08 (0.01)</oasis:entry>
         <oasis:entry colname="col4">1.40 (0.10)</oasis:entry>
         <oasis:entry colname="col5">0.21 (0.01)</oasis:entry>
         <oasis:entry colname="col6">0.24 (0.10)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">AOT<inline-formula><mml:math id="M285" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.02 (0.00)</oasis:entry>
         <oasis:entry colname="col4">0.56 (0.06)</oasis:entry>
         <oasis:entry colname="col5">0.09 (0.01)</oasis:entry>
         <oasis:entry colname="col6">0.07 (0.02)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">N</oasis:entry>
         <oasis:entry colname="col3">36</oasis:entry>
         <oasis:entry colname="col4">42</oasis:entry>
         <oasis:entry colname="col5">16</oasis:entry>
         <oasis:entry colname="col6">151</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">In situ <inline-formula><mml:math id="M286" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">Mean <inline-formula><mml:math id="M287" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.21 (0.15)</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M288" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.06 (0.02)</oasis:entry>
         <oasis:entry colname="col5">0.04 (0.10)</oasis:entry>
         <oasis:entry colname="col6">0.23 (0.04)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">N</oasis:entry>
         <oasis:entry colname="col3">697</oasis:entry>
         <oasis:entry colname="col4">819</oasis:entry>
         <oasis:entry colname="col5">1020</oasis:entry>
         <oasis:entry colname="col6">2238</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NAAPS-RA</oasis:entry>
         <oasis:entry colname="col2">AOT</oasis:entry>
         <oasis:entry colname="col3">0.03 (0.00)</oasis:entry>
         <oasis:entry colname="col4">1.11 (0.02)</oasis:entry>
         <oasis:entry colname="col5">0.75 (0.01)</oasis:entry>
         <oasis:entry colname="col6">0.24 (0.01)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">original</oasis:entry>
         <oasis:entry colname="col2">AOT<inline-formula><mml:math id="M289" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.01 (0.00)</oasis:entry>
         <oasis:entry colname="col4">0.45 (0.02)</oasis:entry>
         <oasis:entry colname="col5">0.25 (0.01)</oasis:entry>
         <oasis:entry colname="col6">0.13 (0.01)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Mean mass-weighted <inline-formula><mml:math id="M290" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.32 (0.01)</oasis:entry>
         <oasis:entry colname="col4">0.21 (0.02)</oasis:entry>
         <oasis:entry colname="col5">0.26 (0.00)</oasis:entry>
         <oasis:entry colname="col6">0.42 (0.00)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NAAPS-RA w/</oasis:entry>
         <oasis:entry colname="col2">AOT</oasis:entry>
         <oasis:entry colname="col3">0.03 (0.00)</oasis:entry>
         <oasis:entry colname="col4">1.09 (0.03)</oasis:entry>
         <oasis:entry colname="col5">0.78 (0.01)</oasis:entry>
         <oasis:entry colname="col6">0.29 (0.02)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">dropsonde RH</oasis:entry>
         <oasis:entry colname="col2">AOT<inline-formula><mml:math id="M291" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.01 (0.00)</oasis:entry>
         <oasis:entry colname="col4">0.43 (0.02)</oasis:entry>
         <oasis:entry colname="col5">0.26 (0.01)</oasis:entry>
         <oasis:entry colname="col6">0.16 (0.01)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NAAPS-RA w/</oasis:entry>
         <oasis:entry colname="col2">AOT<inline-formula><mml:math id="M292" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.01 (0.00)/</oasis:entry>
         <oasis:entry colname="col4">0.29 (0.01)/</oasis:entry>
         <oasis:entry colname="col5">0.17 (0.01)/</oasis:entry>
         <oasis:entry colname="col6">0.09 (0.01)/</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">in situ <inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">γ</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"><underline><bold>0.01 (0.00)</bold>/</underline></oasis:entry>
         <oasis:entry colname="col4"><underline><bold>0.30 (0.01)</bold>/</underline></oasis:entry>
         <oasis:entry colname="col5"><underline><bold>0.19 (0.01)</bold>/</underline></oasis:entry>
         <oasis:entry colname="col6"><underline><bold>0.09 (0.01)</bold>/</underline></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">0.01 (0.00)</oasis:entry>
         <oasis:entry colname="col4">0.31 (0.01)</oasis:entry>
         <oasis:entry colname="col5">0.22 (0.01)</oasis:entry>
         <oasis:entry colname="col6">0.10 (0.01)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">NAAPS-RA w/</oasis:entry>
         <oasis:entry colname="col2">AOT<inline-formula><mml:math id="M294" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">0.01 (0.00)/</oasis:entry>
         <oasis:entry colname="col4">0.29 (0.01)/</oasis:entry>
         <oasis:entry colname="col5">0.16 (0.01)/</oasis:entry>
         <oasis:entry colname="col6">0.10 (0.01)/</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">dropsonde RH</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"><underline><bold>0.01 (0.00)</bold>/</underline></oasis:entry>
         <oasis:entry colname="col4"><underline><bold>0.30 (0.01)</bold>/</underline></oasis:entry>
         <oasis:entry colname="col5"><underline><bold>0.19 (0.01)</bold>/</underline></oasis:entry>
         <oasis:entry colname="col6"><underline><bold>0.10 (0.01)</bold>/</underline></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">and in situ <inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">γ</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">0.01 (0.00)</oasis:entry>
         <oasis:entry colname="col4">0.31 (0.01)</oasis:entry>
         <oasis:entry colname="col5">0.22 (0.01)</oasis:entry>
         <oasis:entry colname="col6">0.11 (0.01)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e5190">Most of the differences between simulated and retrieved values are between
<inline-formula><mml:math id="M296" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0 and <inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M298" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. S6) for pressure layers where
NAAPS-RA underestimates extinction and RH, which may be why this category
displays the best agreement. A larger fraction of differences falls above
0.05 km<inline-formula><mml:math id="M299" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> when NAAPS-RA overestimates extinction and RH (Fig. S7), and
the distribution of differences is relatively wide when NAAPS-RA has
opposing biases in extinction and RH (Fig. S8). This may explain why
agreement is not as good for these latter two categories compared to the
first category.</p>
      <p id="d1e5234">When dropsonde RHs are used, <inline-formula><mml:math id="M300" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> values do not improve for the first
and second categories (pressure layers where NAAPS-RA either underestimates
or overestimates both extinction and RH, respectively). However, shifts in
bias and decreases in RMSE indicate that NAAPS-RA extinction coefficients
are somewhat sensitive to corrections in RH. As expected, bias and RMSE
increase for the third category (pressure layers where NAAPS-RA has opposing
biases in extinction and RH) at all altitudes as substituting dropsonde RHs
can only exacerbate the existing errors in simulated extinction for this
category. Changes in absolute bias and RMSE are almost always detectable for
altitudes below 1500 m and rarely detectable for altitudes above this,
presumably because of the sharp decrease in magnitude for extinction
coefficients above 1500 m.</p>
      <p id="d1e5248">Shifts in absolute bias and RMSE are greater for pressure layers with
dropsonde RHs <inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> % compared to layers with dropsonde RHs
<inline-formula><mml:math id="M302" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> %. Some of the largest differences between NAAPS-RA RH and
dropsonde RH values (differences of 40 %–60 %) occur in pressure layers
where dropsonde RHs are <inline-formula><mml:math id="M303" display="inline"><mml:mrow><mml:mi mathvariant="italic">&lt;</mml:mi><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> % and the magnitude of the extinction
coefficients ranges from 0.00–0.15 km<inline-formula><mml:math id="M304" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. However, when these
dropsonde RHs are substituted, there is no overall change in absolute bias
or RMSE. The fact that extinction agreement is almost entirely insensitive
to this large of a shift in RH emphasizes the fact that changes in simulated
extinction may be more sensitive to the actual magnitude of the final RH
value and the magnitude of the extinction coefficients as opposed to the
absolute error in RH. As mentioned above, NAAPS-RA extinction sensitivity to
changes in RH also depends on speciated particle mass concentrations and/or
the hygroscopicity assigned to each species. Sufficient data are not
available to evaluate relationships between these parameters and extinction
agreement between NAAPS-RA and HSRL-2 retrievals for the entire campaign.
However, we confine our analysis to the ML (assumed to have homogeneous
particle microphysical properties) for four case studies in the following
section to provide some assessment of simulated hygroscopicity and particle
mass concentrations.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Case studies</title>
<sec id="Ch1.S3.SS4.SSS1">
  <label>3.4.1</label><title>Case I: background marine (RF19)</title>
      <p id="d1e5308">RF19 sampled the cleanest conditions for the entire campaign and provided an
opportunity to evaluate NAAPS-RA when AOT was very low (HSRL-2 AOT<inline-formula><mml:math id="M305" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula>
and AOT ranged from 0.01–0.04 and 0.03–0.09, respectively, for the
1<inline-formula><mml:math id="M306" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M307" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M308" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell considered for this flight).
This period was associated with a mild tropical disturbance and advection of
clean marine air from the northern subtropical western Pacific east of the
Philippines (Hilario et al., 2021).</p>
      <p id="d1e5345">NAAPS-RA underestimates AOT<inline-formula><mml:math id="M309" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> and AOT (MLH <inline-formula><mml:math id="M310" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 579 m; AOT<inline-formula><mml:math id="M311" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> bias <inline-formula><mml:math id="M312" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>; AOT bias <inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>; Table 3) and underestimates extinction throughout the column (Fig. 7). Both the AOT<inline-formula><mml:math id="M314" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> bias and shape of the NAAPS-RA extinction profile are largely unchanged when dropsonde RHs are used, which is unsurprising because vertically resolved model and dropsonde RHs are similar in the ML. A mean in situ <inline-formula><mml:math id="M315" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> value of 0.20 <inline-formula><mml:math id="M316" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.16 indicates particles were less hygroscopic than has been observed for other clean marine environments (<inline-formula><mml:math id="M317" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.38</mml:mn><mml:mo>≤</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">0.73</mml:mn></mml:mrow></mml:math></inline-formula>; Titos et al., 2016, and references therein). NAAPS-RA overestimates particle hygroscopicity, but correcting model <inline-formula><mml:math id="M318" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values induces negligible changes in AOT<inline-formula><mml:math id="M319" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> biases because extinction coefficients are already very low in magnitude for this case study. Slight increases in simulated particle mass concentrations and/or mass scattering and absorption efficiencies will likely allow NAAPS-RA to reach full agreement with the HSRL-2 extinction profile. NAAPS-RA appears to accurately simulate fine mass and overestimate coarse mass in our preliminary
comparison of simulated and observed fine and coarse particle mass
concentrations. However, we acknowledge there is great uncertainty in our
method to derive coarse mass concentrations (as described in Sect. 2.6.3),
especially considering ambient RHs do not fall below <inline-formula><mml:math id="M320" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 80 %
in the ML for this case study. We leave a more thorough closure analysis
between simulated and observed mass concentrations to a future study.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e5463">Comparison of model output and observations for Case I (RF19) on 5
October 2019. <bold>(a)</bold> HSRL-2 (blue) and NAAPS-RA extinction profiles when
NAAPS-RA extinction coefficients were calculated using either NAAPS-RA RH
(red) or dropsonde RH (black). Shaded profiles indicate NAAPS-RA extinction
coefficients calculated using in situ <inline-formula><mml:math id="M321" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values and either NAAPS-RA
RH (grey shaded profile) or dropsonde RH (blue shaded profile). For each
shaded profile, the middle line and lines bordering the right and left of
each shaded profile indicate extinction coefficients calculated with either
the mean <inline-formula><mml:math id="M322" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>, mean <inline-formula><mml:math id="M323" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> plus 1 standard deviation, or mean
<inline-formula><mml:math id="M324" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> minus 1 standard deviation, respectively. <bold>(b)</bold> Shaded profiles
shown in greater detail. <bold>(c)</bold> Dropsonde and NAAPS-RA RH profiles. Simulated
and observed fine <bold>(d)</bold> and coarse <bold>(e)</bold> mass concentrations. The red line in
the center of each box of <bold>(d)</bold> and <bold>(e)</bold> represents the median, the edges of
each box indicate the 25 and 75th quartiles, blue crosses belong
to outliers lying in the fourth quartile, and notches represent the 95 %
confidence interval. Horizontal magenta lines in <bold>(a)</bold>, <bold>(b)</bold>, and <bold>(c)</bold> indicate
the mixed-layer height (MLH; 579 m).</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f07.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS4.SSS2">
  <label>3.4.2</label><title>Case II: biomass burning smoke (RF9)</title>
      <p id="d1e5540">In contrast to the background marine case study, RF9 sampled the most
polluted conditions for the campaign as smoke from the MC advected into the
Sulu Sea (Hilario et al., 2021; HSRL-2 AOT<inline-formula><mml:math id="M325" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> and AOT ranged from 0.45–0.68 and 1.26–1.58, respectively, for the 1<inline-formula><mml:math id="M326" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M327" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M328" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell considered for this flight). Like the background
marine case study, NAAPS-RA underestimates AOT<inline-formula><mml:math id="M329" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> and AOT (MLH <inline-formula><mml:math id="M330" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 638 m; AOT<inline-formula><mml:math id="M331" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> bias <inline-formula><mml:math id="M332" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.11</mml:mn></mml:mrow></mml:math></inline-formula>; AOT bias <inline-formula><mml:math id="M333" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.29</mml:mn></mml:mrow></mml:math></inline-formula>), but the model does
capture the general shape of the extinction profile correctly in the ML
(Fig. 8) so that the largest extinction coefficients are just below the MLH.
Biases become more negative when dropsonde RHs are used (AOT<inline-formula><mml:math id="M334" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> bias <inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.13</mml:mn></mml:mrow></mml:math></inline-formula>; AOT bias <inline-formula><mml:math id="M336" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.31</mml:mn></mml:mrow></mml:math></inline-formula>) because NAAPS-RA underestimates RH at altitudes
up to <inline-formula><mml:math id="M337" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 250 m and overestimates RH from <inline-formula><mml:math id="M338" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 250 to
the MLH. The decrease in modeled RH to measured RH at altitudes where
extinction coefficients are highest causes the recalculated NAAPS-RA
extinction profile to fall even further behind the HSRL-2 profile at these
same altitudes, and agreement worsens.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e5677">Same as Fig. 7 except for Case II (RF9) on 15 September 2019. The
MLH is 638 m.</p></caption>
            <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f08.png"/>

          </fig>

      <p id="d1e5686">The observation of negative <inline-formula><mml:math id="M339" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values in smoke plumes advecting
towards the Philippines from the southwest is arguably one of the more
interesting preliminary results from the CAMP<inline-formula><mml:math id="M340" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>Ex field campaign.
However, errors in these observations may still exist given the nature of
the particle chemistry. Nevertheless, <inline-formula><mml:math id="M341" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>(RH) was low, and negative in situ
<inline-formula><mml:math id="M342" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values (<inline-formula><mml:math id="M343" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.06</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M344" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.02) observed on this flight may imply that
a majority of the smoke particles were nonspherical and collapsed into
spherical morphology upon humidification (Shingler et
al., 2016). In contrast, NAAPS-RA assigns a slightly positive <inline-formula><mml:math id="M345" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>
value to smoke particles based on a global average. Thus, when in situ
<inline-formula><mml:math id="M346" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values are used, biases in AOT<inline-formula><mml:math id="M347" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> become even larger (from
<inline-formula><mml:math id="M348" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M349" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.27</mml:mn></mml:mrow></mml:math></inline-formula>), and the HSRL-2 extinction profile cannot even be seen in the
frame of Fig. 8b. This implies NAAPS-RA is underestimating either fine mass,
coarse mass, or scattering and absorption efficiencies (or some combination
of these parameters). Our preliminary assessment of simulated versus
observed fine and coarse particle mass concentrations suggests that NAAPS-RA
is overestimating both fine and coarse mass, but we report this result with
caution. The large discrepancies in extinction between NAAPS-RA and HSRL-2
retrievals are likely due in some part to errors in simulated particle mass
concentrations, and we encourage future work to investigate this more
deeply.</p>
</sec>
<sec id="Ch1.S3.SS4.SSS3">
  <label>3.4.3</label><title>Case III: biomass burning smoke with additional aging (RF10)</title>
      <p id="d1e5788">RFs 9 and 10 were coordinated such that biomass burning emissions from the
MC were sampled on subsequent days, which provided an opportunity to learn
how smoke particle composition and hygroscopicity (among other air mass
properties) changed with <inline-formula><mml:math id="M350" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 24 h of additional aging. Aged
smoke was the dominant air mass in the ML for the 1<inline-formula><mml:math id="M351" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M352" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M353" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell selected for this case study, but conditions were
considerably less polluted compared to RF9 (MLH <inline-formula><mml:math id="M354" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 593 m; HSRL-2 AOT<inline-formula><mml:math id="M355" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula>
and AOT ranged from 0.08–0.11 and 0.20–0.23, respectively, for the
grid cell considered in this case study).</p>
      <p id="d1e5840"><?xmltex \hack{\newpage}?>AMS data indicate the smoke plume sampled during RF9 and RF10 had very
similar chemical composition (Fig. S9), yet in situ <inline-formula><mml:math id="M356" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values for
RF10 suggest the air mass entering the Philippine Sea was more hygroscopic
(<inline-formula><mml:math id="M357" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.04 <inline-formula><mml:math id="M358" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.10) than the air mass sampled in the Sulu Sea
during RF9 (<inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.06</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula>). However, the hygroscopic
properties of this smoke mass are not straightforward as both positive and
negative <inline-formula><mml:math id="M360" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values were observed. More work is needed to fully
explain this phenomenon. Nonetheless, NAAPS-RA treats all smoke particles
the same, no matter their age, motivating interest in how such an assumption
could lead to errors in simulated extinction.</p>
      <p id="d1e5893">For this case study, NAAPS-RA greatly overestimates AOT<inline-formula><mml:math id="M361" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> and AOT
(biases of 0.16 and 0.54 respectively; Fig. 9). NAAPS-RA slightly
underestimates RH throughout the ML (and up to <inline-formula><mml:math id="M362" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2100 m), so
agreement only worsens when dropsonde RHs are substituted into the model
(AOT<inline-formula><mml:math id="M363" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> and AOT bias <inline-formula><mml:math id="M364" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.17 and 0.57, respectively).</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e5931">Same as Fig. 7 except for Case III (RF10) on 16 September 2019.
The MLH is 593 m.</p></caption>
            <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f09.png"/>

          </fig>

      <p id="d1e5940">Similar to Case II, the model overestimates the hygroscopicity of smoke
particles in this air mass (mean in situ and simulated <inline-formula><mml:math id="M365" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values are
<inline-formula><mml:math id="M366" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.04</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.10</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M367" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.26</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.00</mml:mn></mml:mrow></mml:math></inline-formula>, respectively). After adopting in
situ RHs and <inline-formula><mml:math id="M368" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values, NAAPS-RA overestimates AOT<inline-formula><mml:math id="M369" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> (biases
range from 0.07–0.13), suggesting there is likely a positive bias for fine
and/or coarse particle mass concentrations and/or mass scattering and
absorption efficiencies. NAAPS-RA appears to overestimate both fine and
coarse particle mass concentrations in the ML, but additional work is needed
to study agreement between in situ and simulated particle mass
concentrations.</p>
</sec>
<sec id="Ch1.S3.SS4.SSS4">
  <label>3.4.4</label><title>Case IV: Asian pollution (RF17)</title>
      <p id="d1e5998">This case study provides an opportunity to assess NAAPS-RA performance for
an air mass dominated by urban pollution from East Asia with moderate AOT
(HSRL-2 AOT<inline-formula><mml:math id="M370" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> and AOT ranged from 0.03–0.14 and 0.13–0.41,
respectively). The model overestimates extinction (AOT<inline-formula><mml:math id="M371" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> bias <inline-formula><mml:math id="M372" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.06;
Fig. 10) and underestimates RH for all pressure layers within the ML (MLH <inline-formula><mml:math id="M373" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 535 m). When dropsonde RHs are substituted into the model, AOT<inline-formula><mml:math id="M374" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula>
bias increases to 0.09, and extinction increases drastically in the pressure
layer where dropsonde RH exceeds 90 %. NAAPS-RA simulates ABF as the
dominant species in this air mass (average mass fraction of <inline-formula><mml:math id="M375" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.70</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula>), which the model considers as the most hygroscopic aerosol type. The
prevalence of this species in combination with relatively high dropsonde RHs
within the ML makes the large increase in AOT<inline-formula><mml:math id="M376" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> expected.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><?xmltex \def\figurename{Figure}?><label>Figure 10</label><caption><p id="d1e6066">Same as Fig. 7 except for Case IV (RF17) on 1 October 2019. The
MLH is 535 m.</p></caption>
            <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/22/12961/2022/acp-22-12961-2022-f10.png"/>

          </fig>

      <p id="d1e6075"><?xmltex \hack{\newpage}?>ABF is arguably one of the most difficult aerosol types for NAAPS-RA to
accurately model as it combines organic and inorganic species, which can
have very different hygroscopic and optical properties. NAAPS-RA assigns a
<inline-formula><mml:math id="M377" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> value to ABF by assuming 40 % SO<inline-formula><mml:math id="M378" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> and 60 % OA.
However, the composition of anthropogenic and biogenic emissions is likely
to vary across different regions. For example, mean fine mass fractions of
SO<inline-formula><mml:math id="M379" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula> and OA (<inline-formula><mml:math id="M380" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.62</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.04</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M381" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.22</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.03</mml:mn></mml:mrow></mml:math></inline-formula>,
respectively) for this case study are largely different from what the model
assumes, motivating interest in how AOT<inline-formula><mml:math id="M382" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> will adjust when observed
<inline-formula><mml:math id="M383" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values are substituted into the model. The mean in situ <inline-formula><mml:math id="M384" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>
value (<inline-formula><mml:math id="M385" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.23</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.04</mml:mn></mml:mrow></mml:math></inline-formula>) is nearly half the mean NAAPS-RA mass-weighted
<inline-formula><mml:math id="M386" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M387" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.42</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.00</mml:mn></mml:mrow></mml:math></inline-formula>) and the <inline-formula><mml:math id="M388" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> value assigned to ABF
(0.46). When in situ <inline-formula><mml:math id="M389" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values are used in the model, extinction
agreement improves dramatically (AOT<inline-formula><mml:math id="M390" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> biases drop to a range of 0.02–0.03), which suggests that the <inline-formula><mml:math id="M391" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> value assigned to ABF requires
modification for this region.</p>
      <p id="d1e6227">Even with corrected RHs and <inline-formula><mml:math id="M392" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> values, NAAPS-RA overestimates
AOT<inline-formula><mml:math id="M393" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">ML</mml:mi></mml:msub></mml:math></inline-formula> for this 1<inline-formula><mml:math id="M394" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M395" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M396" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid cell, which
implies the model is overestimating fine and/or coarse particle mass
concentrations and/or scattering and absorption efficiencies. Our
preliminary comparison of simulated and observed fine and coarse mass
concentrations indicates simulated mass concentrations are too high, but as
we have mentioned, more work must be done before we can comment on these
mass concentrations with certainty.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <label>4</label><title>Conclusions</title>
      <p id="d1e6281">This study evaluates NAAPS-RA AOT and extinction outputs during the
CAMP<inline-formula><mml:math id="M397" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>Ex field campaign. Simulations of AOT and extinction are compared
to collocated retrievals made with a HSRL-2 over the course of 19 research
flights. Extinction coefficients are evaluated in three altitude layers (40–500, 500–1500 m, and above 1500 m) to evaluate model performance
within the mixed layer (ML), in the transition from the ML to the free
troposphere (FT), and in the FT, respectively. Profiles of relative humidity
(RH) measured with dropsondes are substituted into the model to explore how
correcting errors in modeled RH affects simulations for AOT and extinction.
Additionally, four case studies are analyzed within the ML to investigate
how simulations of extinction change when in situ observations of the
hygroscopic growth parameter, <inline-formula><mml:math id="M398" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>, and RH are substituted into the
model. The main findings of this work are as follows:
<list list-type="bullet"><list-item>
      <p id="d1e6302">NAAPS-RA shows relatively good agreement with HSRL-2 retrievals for AOT
(<inline-formula><mml:math id="M399" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.78; NRMSE <inline-formula><mml:math id="M400" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 48 %) and extinction (<inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.80, 0.81,
and 0.42; NRMSE <inline-formula><mml:math id="M402" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 47 %, 53 %, and 118 % for altitudes of 40–500 m, 500–1500 m, and <inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> m, respectively) considering that there were
few instances of AOT assimilations from MODIS and MISR over the course of
the campaign.</p></list-item><list-item>
      <p id="d1e6356">NAAPS-RA shows poor RH correlation with dropsonde measurements and
underestimates RH in each altitude layer (<inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.16, 0.19, and 0.48;
absolute biases <inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> %, <inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> %, and <inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> % for altitudes of 0–500, 500–1500 m, and <inline-formula><mml:math id="M408" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> m, respectively).</p></list-item><list-item>
      <p id="d1e6415">AOT and extinction agreement does not improve (<inline-formula><mml:math id="M409" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.77; NRMSE <inline-formula><mml:math id="M410" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 49 % (AOT) and <inline-formula><mml:math id="M411" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.78, 0.78, and 0.46; NRMSE <inline-formula><mml:math id="M412" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 51 %, 56 %, and
117 % (for extinction within altitudes of 40–500, 500–1500 m, and
<inline-formula><mml:math id="M413" display="inline"><mml:mrow><mml:mi mathvariant="italic">&gt;</mml:mi><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula> m, respectively)) when dropsonde RHs are substituted into
the model despite considerable differences between simulated and measured
RH. However, biases in model AOT and extinction at all altitudes shift in a
positive direction, which indicates that fixing errors in modeled RH has
some effect on model outputs for AOT and extinction.</p></list-item><list-item>
      <p id="d1e6469">Changes in simulated extinction are more sensitive to the actual magnitude
of the extinction coefficients and magnitude of the dropsonde RHs
substituted into the model rather than the absolute differences between the
model and dropsonde RHs.
<?xmltex \hack{\newpage}?></p></list-item><list-item>
      <p id="d1e6474">The model overestimates <inline-formula><mml:math id="M414" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> for (i) aged smoke particles transported
from the MC and (ii) anthropogenic and biogenic fine (ABF) particles in an
air mass dominated by East Asian outflow.</p></list-item></list></p>
      <p id="d1e6484">Figure 12 in Lynch et al. (2016) shows that <inline-formula><mml:math id="M415" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> values for comparisons
between simulated (NAAPS-RA) and retrieved (AERONET) AOT values from around
the world are slightly lower than our values for this study. Although we can
see AOT agreement does not fluctuate too much across the globe, the driving
forces behind disagreement in these locations are presumably uncertain.
However, it is likely that the model's simple representation of speciated
particle composition, hygroscopicity, and size contributes to these errors in
some part. Findings from this work can assist members of the modeling
community to begin understanding sources of error in modeled AOT so that
forecasts can be improved in SEA and beyond. For example, our results reveal
NAAPS-RA overestimates the hygroscopicity of particles from biomass burning
in the MC as well as anthropogenic particles transported from East Asia,
which leads to inaccurate extinction outputs. This result may apply to other
smoke plumes and/or urban environments, motivating future works to examine
model performance in these types of air masses elsewhere.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e6503">The CAMP<inline-formula><mml:math id="M416" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>Ex dataset can be found at <uri>https://doi.org/10.5067/Suborbital/CAMP2EX2018/DATA001</uri> (Reid et al., 2022). NAAPS-RA AOT data
are available at <uri>https://usgodae.org/cgi-bin/datalist.pl?dset=nrl_naaps_reanalysis&amp;summary=Go</uri>, (Xian, 2020).</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e6521">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/acp-22-12961-2022-supplement" xlink:title="pdf">https://doi.org/10.5194/acp-22-12961-2022-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e6530">JSR, PX, SPB, ALC, ECC, MAF, RAF, SWF, JWH, DBH, CAH, CER, AJS, MAS, GAS, SCvdH, ELW, SW, and LDZ collected and/or prepared the data. ELE conducted the data analysis. ELE, AS, JSR, and PX conducted data interpretation. ELE and AS prepared the manuscript with editing from all coauthors.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e6536">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e6542">Publisher’s note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e6548">The authors acknowledge those involved with executing the CAMP<inline-formula><mml:math id="M417" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>Ex
campaign. The authors also acknowledge Office of Naval Research code 322,
the NASA Interdisciplinary Science Program, the NRL Base Program, and the
Office of Naval Research 35 for the development of NAAPS reanalysis. Eva-Lou Edwards acknowledges support from the Naval Research Enterprise Internship Program
(NREIP).</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e6562">CAMP2Ex measurements and data analysis were funded by NASA (grant no. 80NSSC18K0148). This work was also partially supported by ONR (grant no. N00014-21-1-2115). Sean W. Freeman, G. Alexander Sokolowsky, and Susan C. van den Heever were all supported by NASA (grant no. 80NSSC18K0149).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e6568">This paper was edited by Hailong Wang and reviewed by Jerome Fast and two anonymous referees.</p>
  </notes><ref-list>
    <title>References</title>

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