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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-21-16453-2021</article-id><title-group><article-title>Identifying source regions of air masses sampled at the<?xmltex \hack{\break}?> tropical
high-altitude site of Chacaltaya using<?xmltex \hack{\break}?> WRF-FLEXPART and cluster analysis</article-title><alt-title>Origin of air masses sampled at the high-altitude site of Chacaltaya</alt-title>
      </title-group><?xmltex \runningtitle{Origin of air masses sampled at the high-altitude site of Chacaltaya}?><?xmltex \runningauthor{D. Aliaga et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Aliaga</surname><given-names>Diego</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6781-4568</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Sinclair</surname><given-names>Victoria A.</given-names></name>
          <email>victoria.sinclair@helsinki.fi</email>
        <ext-link>https://orcid.org/0000-0002-2125-4726</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Andrade</surname><given-names>Marcos</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9736-493X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Artaxo</surname><given-names>Paulo</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7754-3036</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Carbone</surname><given-names>Samara</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3397-1183</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff6">
          <name><surname>Kadantsev</surname><given-names>Evgeny</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-4586-1459</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff7">
          <name><surname>Laj</surname><given-names>Paolo</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff8">
          <name><surname>Wiedensohler</surname><given-names>Alfred</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8298-491X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9">
          <name><surname>Krejci</surname><given-names>Radovan</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9384-9702</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Bianchi</surname><given-names>Federico</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2996-3604</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Institute for Atmospheric and Earth System Research/Physics,
Faculty of Science, University of Helsinki,<?xmltex \hack{\break}?> Helsinki, 00014, Finland</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Laboratory for Atmospheric Physics, Institute for Physics
Research,
Universidad Mayor de San Andrés, La Paz, Bolivia</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Atmospheric and Oceanic Sciences, University of
Maryland, College Park, MD, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Institute of Physics, University of Sao Paulo, São Paulo, Brazil</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Agrarian Sciences Institute, Federal University of Uberlândia,
Uberlândia, MG, Brazil</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Finnish Meteorological Institute, Helsinki, 00101, Finland</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>Université Grenoble Alpes, CNRS, IRD, Grenoble INP, Institut des
Géosciences de l'Environnement, Grenoble, France</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>Leibniz Institute for Tropospheric Research, Permoserstr. 15,
04318 Leipzig, Germany</institution>
        </aff>
        <aff id="aff9"><label>9</label><institution>Department of Environmental Science, Bolin Centre of Climate
Research, Stockholm University,<?xmltex \hack{\break}?> Stockholm 10691, Sweden</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Victoria A. Sinclair (victoria.sinclair@helsinki.fi)</corresp></author-notes><pub-date><day>10</day><month>November</month><year>2021</year></pub-date>
      
      <volume>21</volume>
      <issue>21</issue>
      <fpage>16453</fpage><lpage>16477</lpage>
      <history>
        <date date-type="received"><day>13</day><month>February</month><year>2021</year></date>
           <date date-type="rev-request"><day>25</day><month>March</month><year>2021</year></date>
           <date date-type="rev-recd"><day>16</day><month>August</month><year>2021</year></date>
           <date date-type="accepted"><day>12</day><month>September</month><year>2021</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2021 </copyright-statement>
        <copyright-year>2021</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e227">Observations of aerosol and trace gases in the remote troposphere are vital to
quantify background concentrations and identify long-term trends in atmospheric
composition on large spatial scales.
Measurements made at high altitude are often used to study free-tropospheric
air; however such high-altitude sites can be influenced by boundary layer air
masses.
Thus, accurate information on air mass origin and transport pathways to high-altitude sites is required.
Here we present a new method, based on the source–receptor relationship (SRR)
obtained from backwards WRF-FLEXPART simulations and a <inline-formula><mml:math id="M1" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering
approach, to identify source regions of air masses arriving at measurement
sites.
Our method is tailored to areas of complex terrain and to stations influenced
by both local and long-range sources.
We have applied this method to the Chacaltaya (CHC) GAW station (5240 m a.s.l.;
16.35<inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, 68.13<inline-formula><mml:math id="M3" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W) for the 6-month duration of the “Southern Hemisphere high-altitude experiment on particle nucleation and growth” (SALTENA) to identify
where sampled air masses originate and to quantify the influence of the surface
and the free troposphere.
A key aspect of our method is that it is probabilistic, and for each observation
time, more than one air mass (cluster) can influence the station, and the
percentage influence of each air mass can be quantified.
This is in contrast to binary methods, which label each observation time as
influenced by either boundary layer or free-troposphere air masses.
Air sampled at CHC is a mix of different provenance.
We find that on average 9 % of the air, at any given observation time,
has been in contact with the surface within 4 d prior to arriving at CHC.
Furthermore, 24 % of the air has been located within the first 1.5 km above ground level (surface included).
Consequently, 76 % of the air sampled at CHC originates from the free troposphere.
However, pure free-tropospheric influences are rare, and often samples are
concurrently influenced by both boundary layer and free-tropospheric air
masses.
A clear diurnal cycle is present, with very few air masses that have been in
contact with the surface being detected at night.
The 6-month analysis also shows that the most dominant air mass (cluster)
originates in the Amazon and is responsible for 29 % of the sampled air.
Furthermore, short-range clusters<?pagebreak page16454?> (origins within 100 km of CHC) have high
temporal frequency modulated by local meteorology driven by the diurnal cycle,
whereas the mid- and long-range clusters' (<inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula> km) variability occurs on
timescales governed by synoptic-scale dynamics.
To verify the reliability of our method, in situ sulfate observations from CHC
are combined with the SRR clusters to correctly identify the (pre-known) source
of the sulfate: the Sabancaya volcano located 400 km north-west from the
station.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e274">Traditionally, high-altitude measurement sites are used to study the remote
atmosphere and the interactions between the free troposphere (FT) and the
planetary boundary layer (PBL).
These sites provide the opportunity to have long-term in situ observations of
the free troposphere with high time
resolution <xref ref-type="bibr" rid="bib1.bibx14" id="paren.1"/> as opposed to the short
duration and inherent transient nature of airborne measurement campaigns.
Observations of aerosol and trace gases in the FT are of great scientific value
in terms of understanding long-range transport and atmospheric chemistry,
quantifying background concentrations, and observing long-term changes in the
composition of the atmosphere <xref ref-type="bibr" rid="bib1.bibx34" id="paren.2"/>.
Nevertheless, it is well known that high-altitude mountain sites can be
influenced by boundary layer air.</p>
      <p id="d1e283">The planetary boundary layer is the lowest part of the atmosphere and is in
direct contact with the Earth's surface.
The majority of natural and especially anthropogenic aerosols and pollutants
are emitted at the surface and thus directly released into the PBL.
The concentrations of gases and aerosols and their residence times depend on
the structure of the PBL.
Over land the PBL has a pronounced diurnal cycle with deep, well-mixed boundary
layers typically observed during the day and shallow, stable boundary layers
occurring at night.
In complex terrain, thermally driven winds develop (e.g. slope and valley
winds; <xref ref-type="bibr" rid="bib1.bibx19" id="altparen.3"/>) during the day and can transport
aerosols and pollutants from valley bottoms to high-altitude sites.
Additionally, complex mountain meteorological processes such as orographic
lifting can also transport PBL air to high altitude.</p>
      <p id="d1e289">Therefore, high-altitude sites can be influenced by local boundary layer air
and free-tropospheric air where the latter may have undergone long-range
transport due to stronger upper-level winds.
This means that observations must be carefully screened and analysed in synergy
with many parameters to understand the dynamics and diurnal cycle of individual
sites.
Consequently, understanding the history of air masses sampled at mountain-top
sites and related chemical composition is not an easy exercise.
Since the chemical and physical composition of the sampled air masses is, in
general, inherently related to its path through the
atmosphere <xref ref-type="bibr" rid="bib1.bibx22" id="paren.4"/>, having good methods to describe the
history of the sampled air masses increases the value of measurements.
Under these circumstances, the observations can then be treated as samples from
different parts of the atmosphere in both the vertical (PBL vs. FT) and the
horizontal (short-range vs. long-range contributions) domain.</p>
      <p id="d1e295">Much of the analysis of ground-based atmospheric composition observations is
accompanied by studies of what is known as “climatological pathways” with the
aim of mapping the probability of certain air masses reaching the station and
identifying the sources and processes influencing specific types of air
masses <xref ref-type="bibr" rid="bib1.bibx22" id="paren.5"/>.
There are various ways of identifying air mass source regions.
A popular and easy-to-apply approach to identify whether the measured air mass
originates from the PBL or FT is to consider the presence of specific tracers
such as Radon-222 <xref ref-type="bibr" rid="bib1.bibx27" id="paren.6"/> or the ratio of
carbon monoxide to oxidized nitrogen species (<inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">CO</mml:mi><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>y</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; <xref ref-type="bibr" rid="bib1.bibx29" id="altparen.7"/>).
This tracer-based approach has the limitation that it cannot easily resolve
horizontal source areas and only resolves two layers in the vertical.
Alternative methods to identify source regions which utilize meteorological
observations or numerical models range from simply looking at the local wind
direction to single-trajectory analysis, Lagrangian dispersion models and even
chemical transport models.
The choice of method to link the atmospheric composition to the air mass
history largely depends on where the expected sources are.</p>
      <p id="d1e323">If the sources are predominately local, using local wind observations as a
proxy for air mass history may suffice, and this approach has been taken by, for example, <xref ref-type="bibr" rid="bib1.bibx17" id="text.8"/> and <xref ref-type="bibr" rid="bib1.bibx50" id="text.9"/>.
The major weakness of using in situ wind measurements as an indicator of air
mass history is that we cannot assume that the local measurements are
representative of a larger region or of the synoptic-scale flow.
This is particularly important for regions with complex topography in which the
wind speed and direction at the surface may differ drastically to the wind
aloft.
Alternatively, if sources are remote, a low-resolution modelling approach may
be more appropriate to identify air mass history.
Such approaches have been applied by <xref ref-type="bibr" rid="bib1.bibx6" id="text.10"/> at Mt.
Cimone in Italy and by <xref ref-type="bibr" rid="bib1.bibx56" id="text.11"/>  at Jungfraujoch in
Switzerland.</p>
      <?pagebreak page16455?><p id="d1e338">Single-back-trajectory models, often driven by low-resolution meteorological
input data, have been widely used to gain insight into the sampled air mass
history at high-altitude sites (<xref ref-type="bibr" rid="bib1.bibx33" id="altparen.12"/>,  eastern Carpathians, Romania; <xref ref-type="bibr" rid="bib1.bibx6" id="altparen.13"/>, Mt. Cimone, Italy; <xref ref-type="bibr" rid="bib1.bibx25" id="altparen.14"/>, Schneefernerhaus, Germany;
<xref ref-type="bibr" rid="bib1.bibx4" id="altparen.15"/>, central Andes, Chile; <xref ref-type="bibr" rid="bib1.bibx46" id="altparen.16"/>, Mount Tai, China; <xref ref-type="bibr" rid="bib1.bibx41" id="altparen.17"/>, Mt. Fuji, Japan; <xref ref-type="bibr" rid="bib1.bibx11" id="altparen.18"/>, Mt. Chacaltaya, Bolivia; <xref ref-type="bibr" rid="bib1.bibx5" id="altparen.19"/>, Mt. Cimone, Italy; <xref ref-type="bibr" rid="bib1.bibx26" id="altparen.20"/>, Mt. Bachelor, USA; <xref ref-type="bibr" rid="bib1.bibx40" id="altparen.21"/>, Mt. Lulin, Taiwan; <xref ref-type="bibr" rid="bib1.bibx45" id="altparen.22"/>, Askole, Pakistan; <xref ref-type="bibr" rid="bib1.bibx57" id="altparen.23"/>, Mt. Cimone, Italy; <xref ref-type="bibr" rid="bib1.bibx13" id="altparen.24"/>, Mt. Lulin, Taiwan; and references in
<xref ref-type="bibr" rid="bib1.bibx22" id="altparen.25"/>).
Advantages of this method are that it is computationally efficient and easy to
perform, and for individual case studies the output is simple to interpret.
These studies primarily consider the horizontal, large-scale flow obtained by
the single-trajectory model.
This becomes problematic at high-altitude sites where the influence of the
complex topography is known to have a clear effect on the interaction with the
convective boundary layer <xref ref-type="bibr" rid="bib1.bibx52" id="paren.26"/>.
Another disadvantage of single back trajectories, as shown
by <xref ref-type="bibr" rid="bib1.bibx55" id="text.27"/>, is that they do not account for the
filamentation and backward volume growth of the finite sampled air masses.</p>
      <p id="d1e391">Lagrangian dispersion models have also been used to identify source areas at
high-altitude sites (<xref ref-type="bibr" rid="bib1.bibx58" id="altparen.28"/>, Zeppelinfjellet,               Norway; <xref ref-type="bibr" rid="bib1.bibx10" id="altparen.29"/>, Guadeloupe archipelago,        Caribbean; <xref ref-type="bibr" rid="bib1.bibx37" id="altparen.30"/>, Puy de Dome, France; <xref ref-type="bibr" rid="bib1.bibx56" id="altparen.31"/>, Jungfraujoch, Switzerland;
<xref ref-type="bibr" rid="bib1.bibx8" id="altparen.32"/>, Jungfraujoch,                  Switzerland; <xref ref-type="bibr" rid="bib1.bibx15" id="altparen.33"/>, Jungfraujoch,                  Switzerland; <xref ref-type="bibr" rid="bib1.bibx30" id="altparen.34"/>, Alert, Barrow and Zeppelin; Arctic; and <xref ref-type="bibr" rid="bib1.bibx18" id="altparen.35"/>, Mexico City metropolitan area, Mexico). They differ from single-back-trajectory models by accounting for the deformation and stochastic dispersion
of air masses due to turbulent mixing and
convection <xref ref-type="bibr" rid="bib1.bibx55" id="paren.36"/>.
A notable downside of dispersion models, particularly when applied to studies
covering many months, is that they produce a large amount of output which is
quite complicated to understand and interpret.
Therefore, additional post-processing and automated, objective analysis methods
need to be applied to this output to extract the maximum amount of information
while ensuring the resulting dataset is user-friendly.
One way of post-processing dispersion model output is to perform a cluster
analysis, where statistical methods can be used to differentiate different
source regions.</p>
      <p id="d1e422">Cluster analysis is a multivariate technique used to classify elements into
groups in a way that maximizes the similarity (by a predefined metric) within
members of a group while also maximizing the dissimilarity across groups.
Clustering has been extensively used in studies that aim to classify air mass
history.
In the case of single-trajectory studies, the goal is to group trajectories
into ensembles that follow a similar pathway
(<xref ref-type="bibr" rid="bib1.bibx32" id="altparen.37"/>, and references therein).
In dispersion models, clustering analysis has been applied both to classify the
retroplume of the particles (e.g. <xref ref-type="bibr" rid="bib1.bibx55" id="altparen.38"/>) and also to
classify the regional footprint of the particles
(e.g. <xref ref-type="bibr" rid="bib1.bibx56" id="altparen.39"/>, and <xref ref-type="bibr" rid="bib1.bibx42" id="altparen.40"/>).
However, these studies mostly assume that high-altitude sites are also
background sites and therefore are mostly interested in the contribution of
long-range transport sources.
This means that the meteorological data used to drive the dispersion models may
have low spatial resolution since the local sources are assumed to be
negligible.
However, there is still a lack of classification in the vertical dimension and
accountability for the influence of short- and long-range transport
simultaneously, which is of special relevance for locations where short-range
sources are equally relevant to more distant sources.</p>
      <p id="d1e437">One such high-altitude site is the GAW (Global Atmospheric Watch) Chacaltaya
(CHC) atmospheric research station (5240 m a.s.l.; 16.35<inline-formula><mml:math id="M6" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, 68.13<inline-formula><mml:math id="M7" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W), located 20 km from the metropolitan area of La Paz–El Alto but <inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1.6</mml:mn></mml:mrow></mml:math></inline-formula> km higher in
altitude than the centre of La Paz.
For a detailed description of the site see <xref ref-type="bibr" rid="bib1.bibx12" id="text.41"/> and
<xref ref-type="bibr" rid="bib1.bibx62" id="text.42"/>.
Measurements of reactive and greenhouse gases as well as aerosol optical,
chemical and physical properties are routinely monitored at the station
following the GAW-recommended procedures <xref ref-type="bibr" rid="bib1.bibx35" id="paren.43"/>.
At this station, in the context of the SALTENA (Southern Hemisphere high-altitude experiment on particle nucleation and growth) campaign 
<xref ref-type="bibr" rid="bib1.bibx3" id="paren.44"/>, state-of-the-art instruments that measure
aerosol chemical and physical properties were deployed to complement ongoing
long-term observations.
The intensive measurements took place between December 2017 and June 2018
(covering both wet and dry seasons).
The unique location of the station in the under-sampled Southern Hemisphere
enabled us to study a mixture of pristine air masses from the Amazon Basin
loaded with biogenic emissions, regional background air masses from the
Altiplano perturbed by volcanic activity and marine air masses from the
Pacific Ocean.
In addition, strong anthropogenic influence from the La Paz–El Alto
metropolitan area was sampled.
This wide range of potential source areas, along with complex mountain
meteorology and highly detailed observations of the physical and chemical
properties of aerosol and trace gases, means that a comprehensive
meteorological analysis, beyond what is typically performed for aerosol
measurement campaigns, is required.</p>
      <p id="d1e481">The overall objective of this study is to develop and apply to CHC a new
method to identify air mass source regions which is valid for high-altitude
stations that are influenced both by local and long-range sources and where the
vertical classification of sources is as relevant as horizontal segregation.
An outline and overview of the method is given in
Fig. <xref ref-type="fig" rid="Ch1.F1"/>.
The first aim of this study is to use a regional meteorological model (Weather
Research and Forecasting – WRF – model) in combination with a Lagrangian
dispersion model (FLEXible PARTicle dispersion model – FLEXPART) to create a
high-resolution dataset of source areas for CHC at hourly resolution (steps 1
and 2 in Fig. <xref ref-type="fig" rid="Ch1.F1"/>).
The second aim is to develop a new method, based on cluster analysis, to
transform the complex, very large and multi-dimensional dataset into a
user-friendly dataset of air mass source regions (steps 3 to 7).
The third aim is to document the characteristics of the identified source areas
(clusters), which will enable the dataset produced here to be applied in
forthcoming studies on the chemical composition measurements made during the
unique high-altitude SALTENA campaign.
The fourth and final aim is to demonstrate the strength and simplicity of the
classification results from our method, which we do by using<?pagebreak page16456?> them to confirm a
well-known source of sulfate emissions that were measured at the CHC station.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e491">Flowchart describing the method's steps.
The steps are divided into three groups: modelling, pre-processing and
clustering. SRR refers to the source–receptor relationship
(explained more in Sect. <xref ref-type="sec" rid="Ch1.S3"/>).</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f01.png"/>

      </fig>

      <p id="d1e502">The remainder of this study is structured as follows.
In Sect. <xref ref-type="sec" rid="Ch1.S2"/>, the meteorological model and the Lagrangian
dispersion model are described (Fig. <xref ref-type="fig" rid="Ch1.F1"/>, steps 1 and
2).
The newly developed clustering method is described in Sect. <xref ref-type="sec" rid="Ch1.S3"/> (steps 3 to 7 in
Fig. <xref ref-type="fig" rid="Ch1.F1"/>).
Additional diagnostics are presented in Sect. <xref ref-type="sec" rid="Ch1.S4"/>.
The spatial distribution of dispersion model output is presented in
Sect. <xref ref-type="sec" rid="Ch1.S5.SS1"/>.
The relative contributions of the surface, the PBL and the FT to CHC are
described in Sect. <xref ref-type="sec" rid="Ch1.S5.SS2"/>.
The characteristics of the identified source regions are discussed in
Sect. <xref ref-type="sec" rid="Ch1.S5.SS3"/> and
<xref ref-type="sec" rid="Ch1.S5.SS4"/>.
An example indicating that the method works well is shown in
Sect. <xref ref-type="sec" rid="Ch1.S5.SS5"/>.
A discussion on the results and recommendations is presented in
Sect. <xref ref-type="sec" rid="Ch1.S6"/>.
Finally, the conclusions are presented in Sect. <xref ref-type="sec" rid="Ch1.S7"/>.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>High-resolution meteorological modelling and backward dispersion
simulations</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>High-resolution meteorological modelling (step
1)</title>
      <p id="d1e546">To generate a high-resolution, gridded dataset of meteorological variables that
can be used to drive a Lagrangian dispersion model, we used the Advanced Research WRF model version 4.0.3 <xref ref-type="bibr" rid="bib1.bibx53" id="paren.45"/>. WRF is a state-of-the-art, non-hydrostatic, regional numerical weather
prediction model that is used operationally and for research.
Here we perform one 6-month-long continuous simulation starting on 6 December 2017
and ending on 31 May 2018.
As the simulation and subsequent analysis is only 6 months long, this study
provides detailed air mass information for the duration of the intensive period
rather than a climatological description which would require a multiple-year
study.
Four nested domains are used (D01–D04), and their locations are shown in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>a and c.
The outermost and largest domain (D01) has a grid spacing of 38 km,
whereas the innermost and smallest domain (D04) has a grid spacing of
1 km.
Full details of the domains are given in Table S1 in the Supplement.
One-way nesting is used: the outer domain provides boundary data for the inner
nest, but the inner nest does not provide any feedback to the outer domain.
To ensure that the long simulation remains close to reality throughout the 6-month
period, the outer domain is nudged (i.e. analysis nudging) to the boundary
conditions every 6 h.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e556">Overview of the studied region and the WRF model domains.
Panel <bold>(a)</bold> shows the location of the four nested domains (D01–DO4); <bold>(b)</bold> shows the topography in kilometres above sea level (km a.s.l.) of the whole domain; <bold>(c)</bold> is a zoomed-in version of <bold>(a)</bold> and also shows the location of the Chacaltaya station (CHC; 5.2 km a.s.l., blue
dot), La Paz–El Alto metropolitan area (LPB; 3.6 km a.s.l.,
orange dot) and Lake Titicaca (TCC; 3.9 km a.s.l., blue
outline). Panel <bold>(d)</bold> shows the topography (km a.s.l.) in the area closest to CHC.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f02.png"/>

        </fig>

      <p id="d1e580">The initial and boundary conditions were taken from the National Centers for Environmental Prediction (NCEP) Climate Forecast
System Version 2 <xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx49" id="paren.46"/> with a temporal resolution
of 6 h, a horizontal resolution of 0.5<inline-formula><mml:math id="M9" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> and 64
sigma-pressure hybrid layers.
The model topography was obtained from the global multi-resolution terrain
elevation data model <xref ref-type="bibr" rid="bib1.bibx16" id="paren.47"/> with a
resolution of <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> km.
We use the following parameterizations: microphysics is parameterized by the
Goddard scheme, cumulus convection is parameterized by the Grell–Freitas
ensemble scheme in D01 and D02, no cumulus parameterization is used for D03
and D04, the short- and long-wave radiation is parameterized by the new Goddard
short-wave and long-wave schemes, the planetary boundary layer (PBL) physics are
represented by the Mellor–Yamada–Janjić (MYJ) scheme, and the land surface
model is the Unified Noah Land Surface Model.</p>
      <p id="d1e609">The surface temperature of Lake Titicaca was manually prescribed to monthly
means obtained from <xref ref-type="bibr" rid="bib1.bibx44" id="text.48"/> since values prescribed
by WRF were unrealistically low.
This is most likely due to the height of the lake (around 3.8 km a.s.l.)
and the assumptions made by WRF when interpolating surface
temperature of lakes from adjacent sea surface temperature (a similar
lake temperature issue is reported by <xref ref-type="bibr" rid="bib1.bibx59" id="altparen.49"/>).</p>
      <p id="d1e618">There are some limitations to the WRF simulation, primarily related to the
complexity of the terrain.
The 1 km<?pagebreak page16457?> resolution inevitably smooths the topography in comparison to reality,
which can affect the slope angles and furthermore affect the simulated
thermally driven winds.
However, temperature and precipitation comparisons with in situ observations
at CHC show reasonable agreement.
Figure S1 in the Supplement
shows the 6-month time series of the modelled and
observed hourly temperature, daily mean temperature and daily accumulated
precipitation.
Using these data, basic error metrics were computed.
For the hourly temperature data, the mean bias, mean absolute error and root
mean square error are <inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.42</mml:mn></mml:mrow></mml:math></inline-formula>, 1.35 and
1.73 <inline-formula><mml:math id="M12" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, respectively.
For the daily accumulated precipitation, we compiled contingency tables with
different precipitation thresholds and computed the accuracy (see the
Supplement for details of these
calculations).
For a threshold of 1 mm, the accuracy (i.e. fraction of correct forecasts) is
0.65.
Additional evaluation using 0 and 5 mm thresholds, along with the number of
hits, misses, false alarms and correct negatives, is shown in Table S2.
Furthermore, an evaluation of the WRF-simulated monthly accumulated
precipitation for December and May at a number of stations near CHC is
presented by <xref ref-type="bibr" rid="bib1.bibx3" id="text.50"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Backward dispersion simulations (step 2)</title>
      <p id="d1e651">The FLEXible PARTicle dispersion model (FLEXPART) is a Lagrangian transport and
dispersion model which can be used for both forward and backward simulations.
We used version FLEXPART-WRF_v3.3.2 <xref ref-type="bibr" rid="bib1.bibx7" id="paren.51"/> to perform
backward simulations and thus to determine the source regions of air masses
arriving at CHC.
The FLEXPART simulations were driven using the meteorological output from the
6-month WRF simulation.
Output from all four of the WRF output domains was used, and this was available
at a temporal resolution of 15 min.
This high temporal resolution is a clear advantage over using reanalysis data,
which at best are only available once per hour.</p>
      <p id="d1e657">In the FLEXPART simulations, we continuously release 20 000 particles per
hour from CHC from 6 December 2017 until 31 May 2018 and compute their back
trajectories for 4 d.
The particles, passive air tracers, are released in a 10 m deep layer which
extends from 0 to 10 m a.g.l. and over a <inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> km square
centred around CHC.
With the choice of 4 d as the (backwards) simulation time, the average
median particle spends 94 % of its residence time within the domain D01.</p>
      <p id="d1e672">When FLEXPART is run in backward mode, it calculates the emission sensitivity
response function, also referred to as the source–receptor relationship (SRR),
on a user-specified three-dimensional longitude–latitude–height grid.
The output of FLEXPART can be in different units, and here we configure the
model so that the source (IND_SOURCE<inline-formula><mml:math id="M14" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula>2) and the receptor (IND_RECEPTOR<inline-formula><mml:math id="M15" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula>2) are
in mass mixing ratio mode, and therefore the output (SRR) is in units of
seconds (see Table 1 in <xref ref-type="bibr" rid="bib1.bibx21" id="altparen.52"/>).
We choose mass mixing ratios so that the SRR matrix is not affected by
pressure variations in the 3D domain.</p>
      <p id="d1e692">FLEXPART also permits two user-specified nested output domains with the inner
domain closest to the release site (i.e. the receptor), having a higher
resolution than the outer domain.
We make use of this functionality and specify the first<?pagebreak page16458?> FLEXPART output domain
to have the same geographic extent as D03 in the WRF simulation but with the same spatial
resolution (1 km) as D04 in the WRF simulation.
Our second, outer FLEXPART output domain covers the same region as D01 in the
WRF simulation and has the same resolution (9.5 km) as D02 in WRF.
In the vertical direction, we specify the FLEXPART output grid to have 30
uniform levels, each 500 m deep, extending from the surface to 15 km a.g.l.
The rationale for using uniform level spacing is explained in Appendix <xref ref-type="sec" rid="App1.Ch1.S1.SS1"/>.</p>
      <p id="d1e698">FLEXPART also contains options for how turbulence and convection are included
in the simulations.
We take the values of the PBL height, surface sensible heat flux and the
friction velocity directly from the WRF simulation (SCF_OPTION<inline-formula><mml:math id="M16" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula>1).
Turbulence is parameterized using the Hanna
scheme <xref ref-type="bibr" rid="bib1.bibx28" id="paren.53"/> as used in FLEXPART-ECMWF/GFS (TURB_OPTION<inline-formula><mml:math id="M17" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula>1), and we assume skewed rather than Gaussian turbulence in the
convective boundary layer (CBL<inline-formula><mml:math id="M18" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula>1).
Deep convection is also parameterized (LCONVECTION<inline-formula><mml:math id="M19" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula>1).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Pre-processing and clustering of the FLEXPART output</title>
      <p id="d1e741">Here we describe the core of our new method, namely the log-polar grid
transformation (Fig. <xref ref-type="fig" rid="Ch1.F1"/>, step 3), the grid cell
pre-processing (step 4), the iterative <inline-formula><mml:math id="M20" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering algorithm (step 5),
the silhouette scoring (step 6) and finally the selection of the optimal number of
clusters (step 7).
Additional complementary technical details are presented in Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>.</p>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Log-polar grid transformation (step 3)</title>
      <p id="d1e762">The output from FLEXPART is the source–receptor relationship (SRR), which is
related to the particles' residence time in the output 3D grid cells.
These cells are defined by a regular longitude (<inline-formula><mml:math id="M21" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>), latitude (<inline-formula><mml:math id="M22" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula>) and
height (<inline-formula><mml:math id="M23" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>) grid.
In addition to the three spatial dimensions, the SRR has two time dimensions: the
release-time (<inline-formula><mml:math id="M24" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>; the time when the particles arrive at the release location)
and the backwards-time (<inline-formula><mml:math id="M25" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula>; the amount of time before the release time,
which varies from 0 to 96 h in our case).
Thus, the SRR can be written as the five-dimensional matrix <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mi>y</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi><mml:mi mathvariant="italic">τ</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.
The SRR is processed to remove the <inline-formula><mml:math id="M27" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula> time dimension.
This is achieved by summing over <inline-formula><mml:math id="M28" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula>:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M29" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mi>y</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow><mml:mrow><mml:mn mathvariant="normal">96</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:munderover><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mi>y</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi><mml:mi mathvariant="italic">τ</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where the
outcome of this step, <inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mi>y</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, is a four-dimensional array.
The <inline-formula><mml:math id="M31" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula> dimension is removed as we primarily want to determine where the
particles spent time 4 d prior to arriving at CHC and not when (during
the past 4 d) they spent it in each location.</p>
      <p id="d1e912">Furthermore, the output SRR is on two nested grids
(Fig. <xref ref-type="fig" rid="Ch1.F3"/>a), which means we obtain high-resolution
information for regions that are near the receptor and lower-resolution
information for more distant locations.
The rationale is that, on one hand, near the receptor, the higher resolution
provides better detail on potential high-influence sources, for example, in our
case, the nearby metropolitan area of La Paz–El Alto 20 km away.
On the other hand, far away, a low-resolution grid cell suffices since
localized potential source influences are diffused.
However, specifying two output grids with different resolution introduces
challenges such as  the step change in resolution in <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mi>y</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>
(Fig. <xref ref-type="fig" rid="Ch1.F3"/>a): as the SRR is related to the residence time
and the number of each particle in a grid cell, smaller cells have fewer
particles than larger cells, and typically particles move faster through
smaller grid cells than larger grid cells, resulting in a smaller residence time
and SRR, and thus a sharp boundary in the SRR field exists.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e939">Rectangular and log-polar surface plots of the SRR from December
2017 to May 2018. In <bold>(a)</bold> the mean rectangular SRR <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mo>∑</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mo>∑</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mi>y</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>, and in <bold>(b)</bold> the man log-polar SRR <inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>r</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mo>∑</mml:mo><mml:mi>z</mml:mi></mml:msub><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mo>∑</mml:mo><mml:mi>t</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>. The black dot is CHC, and the red polygon is the metropolitan area of La Paz–El Alto.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f03.png"/>

        </fig>

      <p id="d1e1049">To overcome these limitations and more importantly to dramatically reduce the
number of grid cells and thus the data volume, we propose the use of a
log-polar transform <xref ref-type="bibr" rid="bib1.bibx51" id="paren.54"/> of the coordinate system
(Fig. <xref ref-type="fig" rid="Ch1.F1"/>, step 3).
The new log-polar grid has grid cells which gradually increase in size as the
distance from the receptor increases with no sudden step changes to the
resolution.
This is also why in Fig. <xref ref-type="fig" rid="Ch1.F3"/>b, the SRR does not decrease
significantly as the distance from the station is increased (as it does in
Fig. <xref ref-type="fig" rid="Ch1.F3"/>c).
Furthermore, this also implies that the underlying transport patterns are more
readily distinguished using the SRR on the log-polar grid than on the
equirectangular grid.
The regridding process is complex as we had to devise a method that was both
computationally efficient and accurate.
A detailed explanation of this regridding procedure is given in Sect. <xref ref-type="sec" rid="App1.Ch1.S1.SS2"/> of the Appendix and visually illustrated in Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F15"/>.
The results of the regridding process are shown in
Fig. <xref ref-type="fig" rid="Ch1.F3"/>b, which shows a smooth evolution of the SRR with
no boundaries evident at the intersection between the two original nested
grids.
As a result of the grid transformation, we are left with 33 480 log-polar
grid cells defined by 36 <inline-formula><mml:math id="M35" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> wedges, 31 <inline-formula><mml:math id="M36" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> cylinders and
30 <inline-formula><mml:math id="M37" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> levels: <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.
This is 328 times smaller than the original number of grid cells.
In terms of data volume, this dramatically reduces the data volume from
186.6 GB (<inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mi>y</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) to 0.6 GB (<inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>; see Table S3).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Grid cell pre-processing (step 4)</title>
      <?pagebreak page16459?><p id="d1e1152">In general, clustering algorithms benefit from pre-processing of the input
dataset, which here is the <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> matrix.
This pre-processing modifies the dataset for the sake of grouping the grid
cells into clusters – that is assigning each grid cell to a group.
In our case, we apply three pre-processing
procedures (Fig. <xref ref-type="fig" rid="Ch1.F1"/>, step 4): Gaussian filter
smoothing, quantile transform and filtering out non-relevant elements.
In this pre-processing the four-dimensional <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> matrix is also
stacked into a two-dimensional <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> matrix.
Specific details about and additional justification for using the Gaussian
filter smoothing, quantile transform and filtering are presented in the
Appendix, Sect. <xref ref-type="sec" rid="App1.Ch1.S1.SS3"/>.
As a side note, it is important to highlight that the processed SRR values
(<inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) are only used to group the grid cells and not to determine the
statistics of each resulting cluster.
Instead we combined the cluster numbers with original, non-processed data
(<inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) to obtain the results that we present in Sect. <xref ref-type="sec" rid="Ch1.S5"/>.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><?xmltex \opttitle{The $k$-means clustering (steps 5, 6 and 7)}?><title>The <inline-formula><mml:math id="M46" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering (steps 5, 6 and 7)</title>
      <p id="d1e1264">The next step (Fig. <xref ref-type="fig" rid="Ch1.F1"/>, step 5) consists of clustering
the <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>; i.e. the goal is to divide the <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> matrix into
<inline-formula><mml:math id="M49" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>  number of groups (clusters), whose individual grid cell SRR values have a
similar evolution in the <inline-formula><mml:math id="M50" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> dimension.
To be clear, the overall objective is to cluster 3D grid cells in the domain
based on the SRR contribution that they have over time (<inline-formula><mml:math id="M51" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>) as opposed to
clustering the spatial patterns (snapshots), which is the approach taken by
<xref ref-type="bibr" rid="bib1.bibx56" id="text.55"/>.</p>
      <p id="d1e1326">In order to perform a cluster analysis on this dataset, we need to define the
elements that will be clustered or grouped, the number of clusters, and the
features of each element used to determine the group identification.
The 33 480 log-polar grid cells are taken to be the elements to be
clustered.
The element's features are the SRR intensities at each release time (although
called the release time, it is indeed the arrival time at the destination, i.e.
the receptor).
There are 4248 features for each element, one for each of the hourly releases
from 6 December 2017 to 31 May 2018.</p>
      <p id="d1e1329">We use the <inline-formula><mml:math id="M52" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means <xref ref-type="bibr" rid="bib1.bibx36" id="paren.56"/> clustering algorithm due to its
generalized use, speed and adequate performance with a large number of elements
and medium-sized number of clusters.
Additional details on how the <inline-formula><mml:math id="M53" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means algorithm is applied are presented in
Appendix <xref ref-type="sec" rid="App1.Ch1.S1.SS4"/>.
The result of the <inline-formula><mml:math id="M54" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering is that each grid cell in the 3D log-polar
grid is allocated a cluster number.</p>
      <p id="d1e1359"><?xmltex \hack{\newpage}?>However, the <inline-formula><mml:math id="M55" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means algorithm does not automatically select the number of
clusters <inline-formula><mml:math id="M56" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>, and there is not a right answer for the number of clusters.
Too few clusters (e.g. 2) means that no meaningful information is obtained,
whereas too many clusters (e.g. 100) is impractical and risks overfitting.
The optimal number of clusters is usually determined by trying a variety of
options and calculating quantitative measures of how similar an element is to
its own cluster compared to other clusters.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e1379">Average silhouette score for the iterative <inline-formula><mml:math id="M57" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering
algorithm as a function of number of clusters (from <inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> to 24).
Vertical red bars and points show the selected number (6 and 18) of clusters.</p></caption>
          <?xmltex \igopts{width=184.942913pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f04.png"/>

        </fig>

      <?pagebreak page16460?><p id="d1e1407">Here we try 2 to 24 clusters and use the silhouette
score <xref ref-type="bibr" rid="bib1.bibx47" id="paren.57"/>, which ranges from <inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>, to
determine the optimal number (Fig. <xref ref-type="fig" rid="Ch1.F1"/> step 6).
Large positive values of the silhouette score indicate that the element is well
matched within its clusters and poorly matched to other clusters, while a low or
negative value implies possible misclassification.
The overall silhouette score is obtained by averaging over the scores for each
individual element, and in our case we do a weighted average based on the total SRR of each element so that cells with a high density have a bigger influence
on the overall score.
The resulting silhouette scores for 2 to 24 clusters are shown in
Fig. <xref ref-type="fig" rid="Ch1.F4"/>. We select the number of clusters based on three considerations: firstly and
primarily by identifying localized maximums in the silhouette score, secondly
by considering the applicability to our scientific question, and lastly by
accounting for practical aspects (e.g. very large number of clusters are not
easy to analyse and visualize).</p>
      <p id="d1e1437">Based on the silhouette score (Fig. <xref ref-type="fig" rid="Ch1.F4"/>), we first select six clusters as this is a clear local maximum and a suitable number to identify the
direction from which air masses approach CHC.
In addition it is easy to analyse and interpret.
However, this likely lacks details, and in our case, we are interested in the
air mass footprint in terms of not only their direction from CHC but also the
distance from the station and the vertical heights.
Therefore we are also interested in a solution with more descriptive clusters.
Therefore, in addition to <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula>, we also chose the next local maximum in the
silhouette score, which is <inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:math></inline-formula> clusters.
The 18-cluster solution adequately describes the data while maintaining a
straightforward interpretation.
Localized maximums in the silhouette score also exist for <inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">21</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">23</mml:mn></mml:mrow></mml:math></inline-formula>
clusters.
However, we perform our detailed analysis using 18 clusters rather than 21 or
23 clusters as it is more practical to work with a smaller number of clusters.
To ensure the 6 clusters can be directly related to the set of 18 clusters
(i.e. share the same boundaries), we first create the 18 clusters and then
perform a second round of clustering (starting from the 18 clusters) to obtain
the 6 clusters.
The 6 clusters are subsequently referred to as the 6 main pathways following
the terminology used by <xref ref-type="bibr" rid="bib1.bibx22" id="text.58"/>.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Additional diagnostics and data</title>
      <p id="d1e1503">In order to understand and categorize air masses that have been in contact with
the surface (where the emissions occur), we define the surface SRR percentage
influence:
          <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M65" display="block"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mi mathvariant="normal">surface</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mi mathvariant="normal">total</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mn mathvariant="normal">100</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where the <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mi mathvariant="normal">total</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is equal to the theoretical
total residence time of the simulation expressed in seconds
(4 d <inline-formula><mml:math id="M67" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 345 600 s).</p>
      <p id="d1e1557">In addition to air masses which have been influenced by the surface, we are
also interested free-tropospheric (“clean”) air masses, which are those that
originate and remain above the boundary layer (BL).
For this reason we also calculate the pseudo-BL influence:
          <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M68" display="block"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">PBL</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi><mml:mo>*</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mi mathvariant="normal">total</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mn mathvariant="normal">100</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where
          <disp-formula id="Ch1.E4" content-type="numbered"><label>4</label><mml:math id="M69" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1.5</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:munderover><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Using the pseudo-BL influence allows us to calculate the free-tropospheric
influence simply as <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">FT</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msubsup><mml:mi mathvariant="normal">PBL</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi><mml:mo>*</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.
Thus the percentage of air not influenced by the lowest 1.5 km is assumed to
represent the free troposphere (FT).
A pseudo-boundary layer with a constant depth of 1.5 km also means that we
neglect the diurnal variation in the PBL height.
We make this approximation as due to our computational procedure, the specific
depth of the PBL is lost when transforming the SRR output into log-polar
coordinates.
The choice of 1.5 km is motivated by previous studies that have quantified PBL
depth in nearby regions.
For example, <xref ref-type="bibr" rid="bib1.bibx9" id="text.59"/> analysed radiosonde and remote
sensing data from the GoAmazon project <xref ref-type="bibr" rid="bib1.bibx38" id="paren.60"/> and
show that the typical minimum PBL height is 250 m, and the deepest PBLs occur
during daytime in the dry season and are 1.5 km deep on average.
The global study by  <xref ref-type="bibr" rid="bib1.bibx61" id="text.61"/>, based on reanalysis data,
shows that PBL heights are somewhat deeper near CHC than in the Amazon and
typically range between 500 m and 1.5 km.
Therefore, the real PBL will usually be similar in depth or shallower than our
value of 1.5 km.
This means using the pseudo-BL depth will likely over-estimate the influence of
PBL air masses and underestimate the FT influence.</p>
      <p id="d1e1684">When referring to the SRR percentage influence of a cluster, for simplicity
we use
          <disp-formula id="Ch1.E5" content-type="numbered"><label>5</label><mml:math id="M71" display="block"><mml:mrow><mml:mi mathvariant="normal">SRR</mml:mi><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>[</mml:mo><mml:mi mathvariant="italic">%</mml:mi><mml:mo>]</mml:mo><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="normal">SRR</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mi mathvariant="normal">total</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mn mathvariant="normal">100</mml:mn><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        This means that for every time step of the FLEXPART simulation, the sum of all
the SRR cluster values adds up to <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mi mathvariant="normal">total</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
In practice this theoretical value is not always achieved since inevitably a
very small fraction of the particles leave the outer domain (D01) before the
end of the 4 d simulation.
This also implies that for some time periods, the sum of the entire cluster might
not add up to 100 %.</p>
      <p id="d1e1731">In order to describe the land use characteristics of the geographical areas
that the resulting clusters and main pathways originate from, we make use of
the World Wildlife Fund (WWF) terrestrial ecoregions (TERs;
<xref ref-type="bibr" rid="bib1.bibx20" id="altparen.62"/>); WWF marine ecoregions
(MERs; <xref ref-type="bibr" rid="bib1.bibx54" id="altparen.63"/>) classification scheme; and two extra
regions (EXRs), namely the Lake Titicaca and the South Atlantic ocean
regions, that we add to fulfil the domain.
In total, 37 different ecoregions exist in the area covered by the largest WRF
model domain.
The advantage of using these regions is that they are well defined and
described in the literature, do not depend on arbitrary political borders, and
are defined considering regions that have similar ecosystems and therefore
similar potential emission signatures.
Furthermore, the regions are also nested within biomes that provide a more
general picture.
Within our outermost domain (D01), 13 different biomes are present.</p>
      <p id="d1e1741">Sulfate mass concentrations measured at the CHC station from March to May 2018
are used in this study to illustrate an example application of our clustering
methodology.
The aim<?pagebreak page16461?> of this example is to show that our new method can identify the main
source of the high sulfate concentrations measured at CHC.
A very likely source of this is degassing from nearby volcanoes, which was
observed at the same time.
The sulfate dataset is obtained using the quadrupole aerosol chemical
speciation monitor (Q-ACSM, Aerodyne Research Inc.), which is able to routinely
characterize non-refractory submicron
aerosol species such as organics, nitrate, sulfate, ammonium and
chloride <xref ref-type="bibr" rid="bib1.bibx39" id="paren.64"/>.
Because of the low atmospheric pressure, a 130 <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>m diameter critical orifice was
used in order to retain the normal sample mass flow
rate <xref ref-type="bibr" rid="bib1.bibx23" id="paren.65"/>.
In addition, inlet flow and mass calibration (using ammonium nitrate and
ammonium sulfate as standards) were accomplished to guarantee optimal
instrumental performance and mass quantification.
The instrument's time resolution was 30 min.
This sulfate time series was then correlated to the SRR time series of both the
18 clusters and the 6 main pathways.</p>
</sec>
<sec id="Ch1.S5">
  <label>5</label><title>Results</title>
      <p id="d1e1767">We now present the results.
First in Sect. <xref ref-type="sec" rid="Ch1.S5.SS1"/> we present an overview of the mean SRR
horizontal distribution.
In Sect. <xref ref-type="sec" rid="Ch1.S5.SS2"/> we quantify the contribution of the
surface, pseudo-PBL and FT sources to the air masses measured at CHC.
In Sect. <xref ref-type="sec" rid="Ch1.S5.SS3"/> the characteristics of the 6 main
pathways are presented before the more detailed analysis of the 18 clusters is
shown in Sect. <xref ref-type="sec" rid="Ch1.S5.SS4"/>.
Finally, in Sect. <xref ref-type="sec" rid="Ch1.S5.SS5"/> we show one example of how
our clustering results can be combined with measurements to identify source
areas.</p>
<sec id="Ch1.S5.SS1">
  <label>5.1</label><title>Mean SRR spatial distribution</title>
      <p id="d1e1787">Before the clustering results are presented, we first give a brief overview of
the 6-month average, vertically integrated SRR on the log-polar grid and its
spatial distribution (Fig. <xref ref-type="fig" rid="Ch1.F3"/>).
The average SRR is not uniformly distributed, even when similar horizontal
ranges are considered.
Two distinct large-scale areas exist with high SRR values.
The first of these is the lowlands of Bolivia to the south-east and east of CHC, and the second is the lowlands of Peru to the north-west as well as parts of
the Pacific.
These two distinct areas are divided by the Andes (see
Fig. <xref ref-type="fig" rid="Ch1.F2"/>b), which run approximately north–south and act as a
barrier.
The presence of the steep topography is also why areas of low SRR are
identified in northern Bolivia; the easterly winds in this region are blocked
and deflected by the topographic barrier, preventing air masses from these
regions from easily reaching CHC.</p>
      <p id="d1e1794">The inset in Fig. <xref ref-type="fig" rid="Ch1.F3"/>b also shows the average influence
that La Paz–El Alto has on CHC.
The average, vertically integrated SRR values in this area are surprisingly low
and much lower than other areas at a similar radial distance from CHC (<inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> km).
For example, the region 20 km north-east of CHC has average, vertically
integrated SRR values that are more than double those found in the La Paz–El
Alto area.
Figure <xref ref-type="fig" rid="Ch1.F3"/>b only gives a very basic overview of where air
masses that affect CHC originate from.
At this point, before having clustered the SRR, the vertical distribution and
temporal evolution of air masses influencing CHC cannot easily be determined
or visualized.</p>
</sec>
<sec id="Ch1.S5.SS2">
  <label>5.2</label><title>Relative contribution of the surface, PBL and FT to air sampled
at CHC</title>
      <p id="d1e1819">As stated in the introduction, high-altitude mountaintop sites are often used
in an attempt to sample free-tropospheric air.
In this section, we use the SRR output from FLEXPART to determine the relative
influence of the surface, PBL and FT air on the total sampled air mass at CHC
over the 6-month period and the diurnal pattern of this influence.
Our method is probabilistic and, for each observation time, determines the
percentage of the sampled air mass influenced by the PBL or FT.
Figure <xref ref-type="fig" rid="Ch1.F5"/>a shows frequency histograms of the
percentage influence of the “surface” and of a pseudo-PBL (see Eqs. <xref ref-type="disp-formula" rid="Ch1.E2"/>
and <xref ref-type="disp-formula" rid="Ch1.E3"/> for definitions) for each hour.
There is a strong linear correlation between the surface and PBL influence
(slope <inline-formula><mml:math id="M75" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2.38 and <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.9</mml:mn></mml:mrow></mml:math></inline-formula>), which implies that the 1.5 km deep pseudo-boundary layer is in general within the well-mixed boundary layer.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e1852">Panel <bold>(a)</bold> is a frequency histogram showing the percentage (and residence time in hours – upper <inline-formula><mml:math id="M77" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis) of air sampled at CHC
during each modelled hour that was in contact with the surface   (<inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, blue; Eq. <xref ref-type="disp-formula" rid="Ch1.E2"/>) or located within the pseudo-PBL
(<inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="normal">PBL</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi><mml:mo>*</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, orange; Eq. <xref ref-type="disp-formula" rid="Ch1.E3"/>).
Panel <bold>(b)</bold> shows the surface influence (as a residence time) for every day of the modelled period as a function of local time.
Panel <bold>(c)</bold> shows the diurnal mean and median as well as the 5th, 25th, 75th and 95th percentile ranges of the SRR surface influence.
The left <inline-formula><mml:math id="M80" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis is the residence time, and the right <inline-formula><mml:math id="M81" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis is the percentage influence.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f05.png"/>

        </fig>

      <p id="d1e1920">The median influence of the surface is 9 %, meaning that on average 9 % of the
air sampled at CHC has been in contact with the surface in the last 4 d.
In terms of the pseudo-PBL, on average 24 % of the sampled air masses represent
PBL air.
Indirectly this means that approximately 76 % of the air sampled at CHC can be
considered representative of the FT.
Note that this does not mean 76 % of observation times are representative of
the FT; it should be interpreted as, in an average simulation hour, 24 % of
the measured air mass represent the PBL and the remainder the FT.
This is a key strength of our method; it can determine at any given time what
percentage of the sampled air mass arrives from different locations.
An additional interpretation of the results shown in Fig. <xref ref-type="fig" rid="Ch1.F5"/>a is to consider the percentage of time
when there is no influence (0 % on the <inline-formula><mml:math id="M82" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis) from the surface or pseudo-BL, i.e. where there is purely free-tropospheric air masses.
This situation is never detected, which indicates that CHC is rarely representative
of purely FT air.
However, this is partly an artefact of the method employed here as all
particles are forced to arrive at the surface (10 m a.g.l.) at
the station.</p>
      <p id="d1e1933">Figure <xref ref-type="fig" rid="Ch1.F5"/>b shows the diurnal cycle of the
surface influence for each day of the 6-month study period, whereas
Fig. <xref ref-type="fig" rid="Ch1.F5"/>c shows the average diurnal cycle.
The largest positive values, indicative of a large surface influence, occur
during daytime.
The peak emerges at 10:00 local time (panel c) and happens almost every day (panel b).
The duration of the high surface influence increases throughout the campaign,
with higher values of surface influence extending later in the afternoon in
April and May.
This gradual increase in the surface influence during the campaign might be
explained by the<?pagebreak page16462?> transition towards the dry season, when clear-sky conditions
become more frequent, increasing insolation periods, which in turn favour deep
well-mixed PBL structures.</p>
</sec>
<sec id="Ch1.S5.SS3">
  <label>5.3</label><title>The six main pathways</title>
      <p id="d1e1948">In this section we describe the results from clustering the SRR log-polar
cells into six groups.
We call these six groups the main pathways (PWs) since they tend to start near the
station and reach far away from it as opposed to the 18 clusters that occupy
more localized regions.
Also, the limits of many of these are delimited by the Andean plateau.
Furthermore, we label each cluster based on their “clock direction” from CHC
and append them with the abbreviation PW to distinguish them from the 18 clusters.
For example, cluster label “03_PW” refers to the cluster whose centroid
position is located east from the station.</p>
      <p id="d1e1951">In Fig. <xref ref-type="fig" rid="Ch1.F6"/>a and b we show the 6 main PWs
along with the 18 cluster centroids.
The pathways are the shaded coloured regions and contain 2 to 4 clusters from
the 18-cluster grouping.
The 03_PW is located geographically in the lowlands to the east of the station,
occupying the biomes 1, 2, 6 and 9, which in general are tropical forests and
grasslands (Fig. <xref ref-type="fig" rid="Ch1.F6"/>e and f).</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e1960">The shading in <bold>(a)</bold> and <bold>(b)</bold> shows the horizontal extent of the six main PWs. For easier visualization we only shade grid cells which have SRR values in the top 80 % for each cluster.
Each cluster centroid is marked with a disk (short range), square (short-medium range), triangle (medium range) or pentagon (long range) locator. The colour of each region is related to the main pathway they belong to (03_PW: yellow; 05_PW: purple; 07_PW: green; 08_PW: orange; 11_PW: pink; and 12_PW: teal). The dashed black line corresponds to a height of 3.9 km a.s.l. and encircles the Altiplano plateau. Panel <bold>(b)</bold> corresponds to the region inside the red rectangle in <bold>(a)</bold>. Panels <bold>(c)</bold> and <bold>(d)</bold> show the horizontal location of the 18 clusters. The colour is related to their distance range from CHC, and the hatch distinguishes each cluster independently. Panel <bold>(d)</bold> corresponds to the region inside the red rectangle in <bold>(c)</bold>. The colours, both for the centroid markers and the shaded areas, differentiate the distance range from CHC (SR – short range, SM – short-medium range, MR – medium range and LR – long range). The hatch patterns distinguish the area of each of the 18 clusters. Panels <bold>(e)</bold> and <bold>(f)</bold> show the biomes as described in Sect. <xref ref-type="sec" rid="Ch1.S4"/> and are shown to compare the area of the clusters and pathways to the underlying biome.
The resulting area overlaps between each cluster and biome are shown in
Fig. <xref ref-type="fig" rid="Ch1.F9"/>. Figure S3 is similar but shows the ecoregions rather than the biomes.</p></caption>
          <?xmltex \igopts{width=364.195276pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f06.png"/>

        </fig>

      <p id="d1e2006"><?xmltex \hack{\newpage}?>Cluster 05_PW originates from the south of the station in the altiplanic
(montane grass and shrubland, biome 4) and lowland (subtropical dry broadleaf,
biome 6) regions.
Horizontally, it follows the Altiplano plateau and its eastern slopes to the
station.
The cluster 07_PW comes from the south-west, and most of its area is located
above the Pacific Ocean and coast (biomes 3, 5, 7 and 8).
Cluster 09_PW comes from a relatively short distance, and it occupies the
altiplanic biome 4, Lake Titicaca (13) and two Pacific biomes (5, 8).
The cluster 11_PW comes from the north and north-west.
It occupies the lowlands, Altiplano and the Pacific coast, i.e. biomes 1, 4 and 11.
As it gets closer to CHC, cluster 11_PW is located higher than 12_PW and thus
goes above 12_PW.
Finally, 12_PW comes from the lowlands north of the station and is contained
within biome 1 (tropical broadleaf forest).
Additional information containing the pathway boundaries and their spatial SRR
distribution at different <inline-formula><mml:math id="M83" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> levels is shown in Fig. S9.</p>
      <?pagebreak page16464?><p id="d1e2017">In Fig. <xref ref-type="fig" rid="Ch1.F7"/>a to d, we respectively describe the
pathways' centroids in terms of their height above ground, height above sea
level, surface influence (<inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; Eq. <xref ref-type="disp-formula" rid="Ch1.E2"/>) and SRR percentage influence. In general, the farther the centroid is from CHC, the higher above ground level its centroid location is.
The same pattern is observed for their height above sea level; however, if the location of the centroid is not too far away and above a location where the ground height is considerably lower than CHC, then the centroid location is located below the linear trend, e.g. 03_PW and 12_PW.
In terms of their <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, a decreasing trend is observed; in other words, the farther the centroid, the lower the influence from the surface.
Therefore, 12_PW is highly influenced by its contact with ground (62 %;
Figs. <xref ref-type="fig" rid="Ch1.F7"/> and S2), while 07_PW is almost unperturbed by the surface (8 %).
Finally, the SRR influence of each pathway seems to be uncorrelated with the
distance from CHC.
Pathway 03_PW has the highest influence over CHC with a share of 29 %.
This is in agreement with previous studies at
CHC <xref ref-type="bibr" rid="bib1.bibx12" id="paren.66"/>, where air masses from the Amazon were
identified as the major contributors during the wet season (DJFM; our modelling
period covers DJFMAM).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e2054">Centroid properties for each of the main PWs.
Panel <bold>(a)</bold> shows the median height above ground level of each cluster, while <bold>(b)</bold> shows the median height above sea level.
Panel <bold>(c)</bold> shows the ratio between the SRR values that are below 1.5 km
above ground level and the total SRR value for each cluster.
Panel <bold>(d)</bold> shows the mean SRR percentage for each PW.
Quantitative numbers are presented in
Fig. S2.</p></caption>
          <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f07.png"/>

        </fig>

      <p id="d1e2075">Finally, in Fig. <xref ref-type="fig" rid="Ch1.F8"/>, we show the temporal influence of each
of the pathways.
We quantify the influence in percentage of each pathway by dividing the
pathway's SRR values by the theoretical total residence time of the simulation,
96 h <inline-formula><mml:math id="M86" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 3600 s.
Note again that the sum of the influence for all six pathways shown in
Fig. <xref ref-type="fig" rid="Ch1.F8"/> does not always sum to exactly 100, which is due to
particles leaving the domain.
A clear change in the influence pattern at the beginning of May is seen: on one
hand, the influence of pathways 03_PW and 05_PW and to a lesser extent 12_PW
becomes almost negligible.
On the other hand, pathways 07_PW and 08_PW increase their influence.
This is consistent with <xref ref-type="bibr" rid="bib1.bibx12" id="text.67"/>, where it was shown that
during the wet season (DJFMA) air masses from the lowlands and the
east-south-east tend to have a bigger influence on CHC.
In our case, 12_PW and 03_PW are clearly lowland pathways, while 05_PW has a
mixture of Altiplano and lowland influence that, nonetheless, comes from the
south-west and therefore is mostly favoured during the wet season.
The pathway 11_PW does not present a clear change during the 6-month period.
Finally, visual inspection shows that the influence of each pathway varies on a
timescale of 1 to 2 weeks.
We will further develop this point when focusing on the detailed 18 clusters
(Sect. <xref ref-type="sec" rid="Ch1.S5.SS4"/>).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e2096">Time series of the SRR [%] influence for each of the six main
PWs from 6 December 2017 until 31 May 2018.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f08.png"/>

        </fig>

</sec>
<sec id="Ch1.S5.SS4">
  <label>5.4</label><title>The 18 clusters</title>
      <p id="d1e2114">In the previous section, we provided a general picture of the air masses that
influence CHC by using the six pathways.
However, for an in-depth description, we now focus on the more detailed 18
clusters.
We have subdivided these 18 clusters into 4 subgroups based on their horizontal
distance from CHC: short range (SR), short-medium range (SM), medium range (MR)
and long range (LR) for distances ranging from 0 to 100,
100 to 300, 300 to 800 and <inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">800</mml:mn></mml:mrow></mml:math></inline-formula> km,
respectively.
Furthermore, we have labelled each cluster based on their distance range along
with their “clock direction” from CHC.
For example, cluster label “09_MR” refers to the cluster whose centroid
position is located west from the station at a distance between 300 and
800 km.
As done before, we first describe the clusters in terms of their horizontal
location, then their vertical centroid properties and finally their temporal
evolution.
In Fig. <xref ref-type="fig" rid="Ch1.F6"/>c and d, we show the clusters'
geographical location along with a reference to the biomes that they occupy in
space (Fig. <xref ref-type="fig" rid="Ch1.F6"/>e and f).
Additional information containing the clusters' boundaries and their spatial SRR
distribution at different <inline-formula><mml:math id="M88" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> levels is shown in Fig. S1.</p>
      <p id="d1e2138">To further quantify the superposition of clusters and biomes presented
in Fig. <xref ref-type="fig" rid="Ch1.F6"/>e and f,
in Fig. <xref ref-type="fig" rid="Ch1.F9"/> we show a heat map of the percentage of
area that each cluster and biome share.
For example, the geographical area of cluster 02_MR is split between the
tropical and subtropical moist broadleaf forests (biome 1, 56 %), the tropical
and subtropical grasslands, savannas and shrublands (biome 2, 28 %), the tropical
and subtropical dry broadleaf forests (biome 6, 10 %), and the flooded
grasslands and savannas (biome 9, 6 %).
In general, there is a clear split between clusters located  north-east (i.e.
clock direction of 11 to 05) and south-west (clock direction of 05 to 11) from
the station.
The first are located in the generally more tropical and humid lowland biomes
(1, 2, 6, 9), while the latter are located in drier altiplanic biomes (4, 13)
and pacific biomes (3, 5, 7, 8, 10, 11, 8).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e2147">Heat map showing the biome and land cover characteristics
associated with each of the 18 clusters.
The percentage values indicate the percentage of air in each cluster that travels over each different biome.
The darker the colour, the stronger the influence from the corresponding biome. For a description of the biomes see Sect. <xref ref-type="sec" rid="Ch1.S4"/>.
Due to rounding errors and the use of integers, some columns add to 99 rather
than 100.</p></caption>
          <?xmltex \igopts{width=469.470472pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f09.png"/>

        </fig>

      <p id="d1e2159">In Fig. <xref ref-type="fig" rid="Ch1.F10"/>a to d, we respectively describe the
clusters' centroids in terms of their height above ground, height above sea
level, surface influence (<inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; Eq. <xref ref-type="disp-formula" rid="Ch1.E2"/>) and SRR percentage
influence.
In general, they follow the same patterns that we described for the six pathways
with the exception that there are more clusters below the CHC station's height
a.s.l. (Fig. <xref ref-type="fig" rid="Ch1.F10"/>b).
These clusters, namely 02_SR, 12_SM and 03_SM, are located close to CHC in the
lowlands located north and north-east from the station.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><?xmltex \def\figurename{Figure}?><label>Figure 10</label><caption><p id="d1e2181">Cluster-median properties for each cluster.
The horizontal axis for all panels represents the radial distance from CHC.
Panel <bold>(a)</bold> shows the median height above ground level of each cluster, while <bold>(b)</bold> shows the height above sea level.
Panel <bold>(c)</bold> shows the median ratio between the SRR values that are below 1.5 km above ground level and the total SRR value for each cluster.
Panel <bold>(d)</bold> shows the median SRR percentage for each cluster.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f10.png"/>

        </fig>

      <p id="d1e2202">Specifically, all of the short-range clusters' centroids are below 2 km a.g.l. and below 5.2 km a.s.l. (Fig. <xref ref-type="fig" rid="Ch1.F10"/>a and
b), which is below the CHC station height (5.2 km a.s.l.).
Furthermore, these clusters are in close contact with the surface since their
<inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (Eq. <xref ref-type="disp-formula" rid="Ch1.E2"/>) is greater than 50 %
(Fig. <xref ref-type="fig" rid="Ch1.F10"/>c).</p>
      <p id="d1e2222">The short-medium-range clusters' centroids are between 2.4  and
2.6 km a.g.l.
However, their height a.s.l. varies from 4.1 to 6.1 km.
This is due to clusters coming from both the Altiplano to the south-west and the
lowlands to the north-east of the station.
In general, only one-third of these clusters' air masses are below
1.5 km (<inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), and thus these clusters include notably more influence from
the free troposphere than the SR clusters.</p>
      <p id="d1e2236">The medium-range centroids are between 3.2 and 6.8 km a.g.l.
This variance is mostly proportional to the distance from CHC (Fig. <xref ref-type="fig" rid="Ch1.F10"/>a),
with clusters 04_MR and 05_MR being slightly below the rest due to their
location in the lowlands.
Their height above sea level varies from 6.1 to 7.1 km
(Fig. <xref ref-type="fig" rid="Ch1.F10"/>b).
In terms of their <inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, these clusters vary from 7 % to 20 %.
These values are approximately inversely proportional to their centroid
distance from the station (Fig. <xref ref-type="fig" rid="Ch1.F10"/>c).</p>
      <p id="d1e2257">Finally, for the long-range subgroup, the far distance of their clusters' centroid from CHC is reflected in their mean height a.g.l. of 8.0 km, mean
height a.s.l. of 8.4 km and their low mean <inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi mathvariant="normal">SRR</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of 0.7 %.
Furthermore, due to this high<?pagebreak page16465?> altitude and low influence from the surface, air
masses arriving from these clusters are likely to present free-troposphere
characteristics.
These clusters are all located west of the station (clock direction 07–10).</p>
      <p id="d1e2271">The temporal evolution of the clusters is shown in
Figs. <xref ref-type="fig" rid="Ch1.F11"/> and <xref ref-type="fig" rid="Ch1.F12"/>.
All clusters within the short-range subgroup show a high degree of temporal
variability (Fig. <xref ref-type="fig" rid="Ch1.F11"/>a and b).
Cluster 02_SR presents a high variability in frequency, which upon further analysis
(via Fourier transform; Fig. S4)
is shown to be a clear
diurnal pattern.
However, this pattern does not happen every day
(Fig. S5)
but in 81 out of the 176 modelled
days (46 %).
During these days, the peak happens in the early afternoon (13:00 local time).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><?xmltex \currentcnt{11}?><?xmltex \def\figurename{Figure}?><label>Figure 11</label><caption><p id="d1e2282">Time series of the SRR [%] cluster influence from 6 December 2017
until 31 May 2018. Panels <bold>(a)</bold> and <bold>(b)</bold> show the SR clusters, and <bold>(c)</bold> and <bold>(d)</bold> show the SM clusters.
Note the different <inline-formula><mml:math id="M94" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis between panels <bold>(a)</bold> and <bold>(b)</bold> and <bold>(c)</bold> and <bold>(d)</bold>.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f11.png"/>

        </fig>

      <p id="d1e2323">The cluster 04_SR is highly variable as well; however it does not present a
diurnal pattern (Fig. S4), and its variation is similar to
that of 05_MR, probably due to the fact that both clusters belong to the same
pathway.
Cluster 07_SR does present a sharp diurnal pattern in 41 (23 %) out of
176 modelled days (Fig. S6), peaking at 11:00 local
time.
We conjecture that the peak time difference between 02_SR (13:00 local time) and 07_SR (11:00 local time)
is due to the different land type; 02_SR originates from the high-humidity
biome 1 (tropical and subtropical forest;
Fig. <xref ref-type="fig" rid="Ch1.F6"/>f), whereas 07_SR originates from the less
humid biome 4 (montane grasslands).
This difference would entail different thermal inertia, different diurnal
cycles, and partitioning of the sensible and latent heat fluxes and thus a
different boundary layer<?pagebreak page16467?> evolution.
Cluster 07_SR is of particular interest since intense anthropogenic emission
sampled at CHC would most likely be generated in this highly populated area.
Furthermore, the close contact of cluster 07_SR with the surface and its
diurnal variability favour transport of emissions to the station during the day,
when PBL air from La Paz and El Alto is advected upslope by thermally driven
winds.
The cluster 10_SR, which originates close to Lake Titicaca, presents a diurnal
pattern in 63 (36 %) out of 176 d, peaking at 08:00 local time
(Fig. S7).
We conjecture that this early-morning peak is related to the lake breeze
circulation that develops due to the temperature difference between land and
the lake.
The average surface temperature of the lake, obtained
from <xref ref-type="bibr" rid="bib1.bibx44" id="text.68"/>, is 10 <inline-formula><mml:math id="M95" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and does not have
a diurnal cycle.
At 08:00 local time, the lake's surface temperature is higher than the
surroundings, favouring a land breeze (airflow from land to the lake) near the
surface and ascent over the lake.
The return flow, near the top of the BL, potentially advects air masses from
the lake to CHC.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F12" specific-use="star"><?xmltex \currentcnt{12}?><?xmltex \def\figurename{Figure}?><label>Figure 12</label><caption><p id="d1e2342">Time series of the SRR [%] cluster influence (similar to Fig. <xref ref-type="fig" rid="Ch1.F11"/>).
Panels <bold>(a)</bold> and <bold>(b)</bold> show the MR clusters.
Panels <bold>(c)</bold> and <bold>(d)</bold> display the LR clusters.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f12.png"/>

        </fig>

      <p id="d1e2366">The cluster 11_SR does not present a diurnal variation (Fig. S4),
and its
influence seems to be mostly driven by the medium-range cluster 11_MR
(Fig. <xref ref-type="fig" rid="Ch1.F12"/>).
Cluster 12_SR does present a diurnal pattern
(Fig. S8)
in 48 d out of the 176 modelled days
(27 %), with a peak around 10:00 local time.
This earlier peak, in comparison to 07_SR, is most likely due to its close
location to CHC (the closest one, 14 km) so that early-morning
irradiation would create favourable conditions for up-slope winds.</p>
      <p id="d1e2371">The SM, MR and LR clusters' temporal
variability is shown in Figs. <xref ref-type="fig" rid="Ch1.F11"/>c and d and
<xref ref-type="fig" rid="Ch1.F12"/>a to d.
The power spectra of the SRR intensity for these clusters are shown in
Fig. S4
and are between 1 and 2 weeks except for 08_SM and 12_SM, which, in
addition, also show a small diurnal variability.</p>
      <p id="d1e2378">The prevalence of some short-medium-range clusters changes during the 6-month
period.
Clusters 03_SM, 12_SM, 02_MR, 04_MR and 05_MR occur regularly from December
(wet season) to April (transition season) but cease influencing in May (dry
season).
In contrast, the influence of clusters 06_SM, 11_MR and 10_LR do not change
substantially during the 6 months, whereas the influence of clusters 08_SM, 09_MR, 07_LR and 08_LR increases in May.</p>
      <p id="d1e2381">Finally, in Fig. <xref ref-type="fig" rid="Ch1.F13"/> we present a quantitative
summary of the 18 clusters' centroid properties along with their average SRR
influence.
Furthermore, we also link each of the 18 clusters to their main pathway.
On average, there are three clusters per pathway and at least two distinct distance
ranges.
Furthermore, the clusters within each pathway are heterogeneous in position,
surface influence and age, which supports the idea that further insight into the
air mass transport patterns can be attained by further subdividing the
pathways.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F13" specific-use="star"><?xmltex \currentcnt{13}?><?xmltex \def\figurename{Figure}?><label>Figure 13</label><caption><p id="d1e2388">Properties of the 18 clusters (<inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:math></inline-formula>).
The short name's digits refer to the clockwise direction of the centre of mass of each cluster. The letters refer to the range: SR – short range, SM – short-medium range, MR – medium range and LR – long range.
The SRR [%] column describes the average contribution of each cluster.
We also show the distance from CHC, height above ground and height above sea
level of each cluster's centre of mass.
Furthermore, <inline-formula><mml:math id="M97" display="inline"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mi mathvariant="normal">total</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:math></inline-formula> [%]
shows the ratio between the SRR below 1.5 km and
the SRR summed over the full vertical column (<inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">SRR</mml:mi><mml:mi mathvariant="normal">total</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>).
The age column shows the weighted median time (in hours) required by the air
masses to arrive from the respective cluster to CHC.
The last two columns describe the results of clustering the 18 clusters into 6 clusters (main pathways, <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula>).
The digits also refer to the clockwise direction.
The last column adds up the SRR [%] of the cluster belonging to each main
pathway. The colours in the first column correspond to the six pathways and associated colours shown in Figs. <xref ref-type="fig" rid="Ch1.F6"/>a and b,
<xref ref-type="fig" rid="Ch1.F7"/>, and <xref ref-type="fig" rid="Ch1.F8"/>.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f13.png"/>

        </fig>

</sec>
<sec id="Ch1.S5.SS5">
  <label>5.5</label><title>An example application: sulfate from volcanic degassing</title>
      <?pagebreak page16469?><p id="d1e2478">This section presents a proof of concept for our newly developed method to
identify source regions of air sampled at CHC.
We use in situ observations of particulate sulfate at CHC taken with a Q-ACSM
instrument together with the results of our air mass history clustering
analysis presented above to identify the source of the emissions.
During March and April, satellite imagery showed that while the Ubinas volcano
was not degassing, the Sabancaya volcano, located 400 km WNW from CHC,
was emitting, and thus there was a clear, known, almost point source of
particulate sulfate.
As there are no other comparable strong point sources of particulate sulfate in
the domain of interest, we assume that when high levels of particulate sulfate
were measured at CHC, the air mass passed through the area near the volcano.
Therefore, there should be a high correlation between the time series of
sulfate and the SRR time series for clusters originating near the volcano.</p>
      <p id="d1e2481">To determine if this is the case, we calculated the “Pearson” correlation
coefficients for all available measurements of sulfate from the Q-ACSM to the
SRR time series of each of the 18 clusters and all of the 6 pathways which are
shown in Fig. <xref ref-type="fig" rid="Ch1.F14"/>a.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><?xmltex \currentcnt{14}?><?xmltex \def\figurename{Figure}?><label>Figure 14</label><caption><p id="d1e2488">In <bold>(a)</bold>, we show the Pearson correlation coefficient between
sulfate concentrations sampled at CHC and both the 18 clusters
and the 6 PWs. In <bold>(b)</bold>, the regions covered by the pathway 08_PW and the clusters 09_MR,
08_SM, 10_SR and 07_SR are shown along with Sabancaya and Ubinas volcanoes
(both are located within 09_MR).
All of the aforementioned clusters are contained by 08_PW.
Panels <bold>(c)</bold> and <bold>(d)</bold> show the time series of sulfate sampled at CHC and the normalized
SRR time series of 08_PW and 09_MR, respectively.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f14.png"/>

        </fig>

      <p id="d1e2510">The cluster and pathway with the highest coefficients are 09_MR (0.40)
and 08_PW (0.42), and both correlations have a <inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mi mathvariant="normal">value</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">0.001</mml:mn></mml:mrow></mml:math></inline-formula>.
The horizontal locations of this cluster and pathway are shown in
Fig. <xref ref-type="fig" rid="Ch1.F14"/>b, and their corresponding time series are shown in
Fig. <xref ref-type="fig" rid="Ch1.F14"/>d.
The time series for the sulfate measurements is shown in
Fig. <xref ref-type="fig" rid="Ch1.F14"/>c.
The correlation in combination with either the simplified (6 pathways) or the
specific (18 clusters) clustering scheme correctly assigns the source region to
the location of the degassing Sabancaya volcano.</p>
      <p id="d1e2534">The coefficients from the pathways are quite clear; the highest value of
0.42 is at least twice as high as the next candidate, 07_PW.
This clearly distinguishes 08_PW as the best candidate for the source of
measured sulfate.
The 18 clusters also assign the highest coefficient value correctly to 09_MR.
However, 10_SR, 11_SR and 08_LR all have similarly high correlation
coefficients.
Therefore, while the results from 18 clusters are better at pinpointing the
source region of sulfate, other regions also appear as plausible candidates, so
there is a risk of overfitting when too many regions are considered.
This may be a result of these source regions being entangled in terms of their
temporal influence over the station.
For example, in this particular case, the high correlation of 10_SR, 11_SR and
08_LR could be attributed to the fact that air masses that travel through the
region of the volcano also have a time residence in the regions where 10_SR,
11_SR and 08_LR are located.</p>
      <p id="d1e2537">This example shows that the clustering scheme is successful in identifying
regions in its simplified version (6 pathways) and also in its more detailed
version (18 clusters), although care must be taken when drawing conclusions so
that we do not overfit to the source regions.
Finally, it should be noted that only one example is presented here.
Future work will include the extension to additional case studies, for example,
comparing the clusters to measurements of black carbon.</p>
</sec>
</sec>
<sec id="Ch1.S6">
  <label>6</label><title>Discussion and recommendations</title>
      <p id="d1e2549">Previously, we described the characteristics and location of the 6 pathways and
18 clusters and related this to the surface type (biomes).
It is also relevant to consider how the pathway positions and time series
relate to typical meteorological patterns.</p>
      <p id="d1e2552">During the austral summer, the Intertropical Convergence Zone (ITCZ) migrates
south, coinciding with the decrease in the meridional gradient temperature and
the associated southward shift of the westerly subtropical jet stream.
At the same time, deep convection starts to develop especially in the central
part of the continent.
This favours the expansion of the equatorial easterly winds, and thus a weak
mean east-to-west flow in the middle and upper troposphere is
established <xref ref-type="bibr" rid="bib1.bibx24" id="paren.69"/>.
This east-to-west flow is well captured by 03_PW (03_SM, 02_MR and 04_MR), which
is strong in DJFMA.</p>
      <p id="d1e2558">At the same time, the expansion of the trade winds also generates the South
American low-level jet (SALLJ), which brings moisture from the Atlantic and the
Amazon basin first to the eastern slopes of the Andes and then turns in a
north-to-south fashion towards the southern part of the continent.
It is known that the SALLJ is also responsible for bringing moisture to the
Altiplano plateau since part of this flow is channelled into/goes over the
plateau <xref ref-type="bibr" rid="bib1.bibx31" id="paren.70"/>.
This pattern correlates well with 12_PW (12_SR, 02_SR and 12_SM), which brings
low-altitude air masses from the eastern slopes of the station.
The pathway is also strong during DJFMA, and its influence is diminished in May.
It is important to note that 03_PW and 12_PW do not necessarily influence the
station synchronously.</p>
      <p id="d1e2564">During the austral winter, the ITCZ migrates north, and the subtropical westerly
jet stream moves north, reaching up to 20<inline-formula><mml:math id="M101" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S
<xref ref-type="bibr" rid="bib1.bibx24" id="paren.71"/>.
This creates an upper-level, large-scale westerly flow that favours air masses
from the Pacific–Altiplano region.
This coincides with the increment of the influence of both 07_PW (06_SM, 07_LR
and 08_LR) and 08_PW (specially 08_SM and 09_MR).
The first brings long-range subsiding air masses from high up in the
troposphere (7.7 km a.s.l.), while the second advects dry air from Altiplano
at a low level (2.5 km a.g.l.).
Both of these clusters are present during the dry season and reach maximum
intensity in May.</p>
      <p id="d1e2580">The connections of pathways 05 and 11 to the general atmospheric dynamics are not immediately evident.
Pathway 05_PW comes from the south and is strongest between December and March
and has a low centroid height a.g.l. (3 km).
This could be linked to the development of a strong South Atlantic Convergence
Zone starting in the eastern slopes of the Altiplano at latitudes of around
20<inline-formula><mml:math id="M102" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> that would pull surface air from the south.
On the other hand, 11_PW, which consists of three clusters, originates from both
from the Amazon and the Pacific  (Fig. <xref ref-type="fig" rid="Ch1.F9"/>).
These multiple sources areas, spanning both east and west, indicate that 11_PW
is a “hybrid” pathway and therefore likely occurs in both the wet and dry
seasons.</p>
      <p id="d1e2594">This study builds upon a previous source region analysis performed by
<xref ref-type="bibr" rid="bib1.bibx12" id="text.72"/> at the CHC station, where a similar WRF set-up was
used in combination<?pagebreak page16470?> with back trajectories.
Our methodological approach is notably different from this earlier study
primarily as we use a Lagrangian dispersion transport model rather than a back
trajectory model, meaning that turbulent mixing and convection processes that
air parcels experience during transport are better represented in this study.
Additionally, our WRF simulations and hence meteorological data have a higher
vertical resolution (61 levels compared to 28), and our 18 clusters provide more
detail than the 6 clusters presented by <xref ref-type="bibr" rid="bib1.bibx12" id="text.73"/>.
Our pathway results are largely in agreement with this previous study: similar
source regions are observed for similar seasons, and both studies show that
source regions from the west start influencing the station in the transition
month of May.
However, key additions of this study are that (1) the vertical distribution of the
air masses' sources is more accurately captured, (2) the influence of the
surface and the pseudo-PBL on air sampled at CHC is more accurately quantified,
and (3) the diurnal cycle is captured by the analysis.</p>
      <p id="d1e2603">The type of analysis performed here is applicable to many other stations
worldwide both in mountainous regions and also for stations in non-mountainous
areas which are equally influenced by local and remote sources.
Therefore, based on the experience and knowledge gained here, we make the
following recommendations for future studies:
<list list-type="bullet"><list-item>
      <p id="d1e2608">For source
identification in regions with complex terrain we strongly recommend the use of
Lagrangian dispersion models over simple, limited-number back-trajectory-based approaches.
This has been previously noted also by <xref ref-type="bibr" rid="bib1.bibx55" id="text.74"/>.</p></list-item><list-item>
      <p id="d1e2615">The accuracy of the meteorological input data is crucial for
reliable results and therefore should be verified before performing the
FLEXPART simulations.
In our case, this step revealed large biases in the temperature of Lake Titicaca which affected local wind patterns.</p></list-item><list-item>
      <p id="d1e2619">Selecting the optimal number of clusters is challenging,
particularly in situations like this, where there is a continuum rather
than a clear number of clusters.
Consequently, in addition to quantitative scores, the scientific applications
and practical aspects should be considered when selecting the number of
clusters.
We recommend that both pathways (smaller number) and clusters (larger number)
are computed and their centroid characteristics analysed.
Both are useful and have notably different applications.</p></list-item><list-item>
      <p id="d1e2623">Due to computational limitations and given that the campaign
only
lasted for 6 months, we only simulated 6 months.
For a more complete physical understanding,<?pagebreak page16471?> if computational resources allow,
we recommend that a full annual cycle is always simulated even if the
observational campaigns the model simulations support are shorter in duration.</p></list-item></list></p>
</sec>
<sec id="Ch1.S7" sec-type="conclusions">
  <label>7</label><title>Summary and conclusions</title>
      <p id="d1e2634">In this study we successfully developed a new method to identify air mass
source regions in sites of complex topography.
We then applied this methodology to the GAW station CHC, located near La Paz–El Alto at 5240 m a.s.l.
In order to accomplish this, we started with a WRF simulation in combination
with FLEXPART to create a high-resolution dataset of source areas for CHC.
Then we applied our new method, based on cluster analysis, to transform the
complex and large output dataset into a user-friendly time series dataset of air
mass source regions.
We documented the characteristics of the identified source areas and
demonstrated the strength and simplicity of the method's classification results
by applying our method to confirm that the Sabancaya volcano is the source of
sulfate measurements at the CHC station.
The main conclusions of our analysis are as follows.
<list list-type="bullet"><list-item>
      <p id="d1e2639">On average,
9 % of the air sampled at CHC has been in contact with the surface and 24 %
with the pseudo-PBL within the previous 4 d.
Therefore we can conclude that on average, at any given time 76 % of the
measured air mass at CHC represents free-tropospheric air.
Thus, the air masses sampled at CHC are very rarely purely free-tropospheric
air masses (Fig. <xref ref-type="fig" rid="Ch1.F5"/>a).</p></list-item><list-item>
      <p id="d1e2645">The surface influence has a clear diurnal cycle, with low
contributions during the night and higher contributions starting at
10:00 local time and continuing during the day.
The duration of the high surface influence during daytime is longer in the dry
season (May) compared to the wet season (December–March;
Fig. <xref ref-type="fig" rid="Ch1.F5"/>b and c).</p></list-item><list-item>
      <p id="d1e2651">Air masses arriving at CHC have a wide range of sources covering
many different biomes and altitudes, and it is common for any one
specific sample time to have more than one source region
(Figs. <xref ref-type="fig" rid="Ch1.F6"/>, <xref ref-type="fig" rid="Ch1.F8"/>,
<xref ref-type="fig" rid="Ch1.F11"/>, <xref ref-type="fig" rid="Ch1.F12"/> and
S3).</p></list-item><list-item>
      <p id="d1e2663">The most dominant pathway to emerge in our 6-month study is
03_PW, which is responsible for 29 % of the SRR and originates in the Amazon. However, as we detected that this PW does not occur in May, we hypothesize, based on <xref ref-type="bibr" rid="bib1.bibx12" id="text.75"/>, that if our analysis extended over all of the dry season (May–August), the overall prevalence of this PW would decrease, and others (e.g. 07_PW and 08_PW) would increase (Figs. <xref ref-type="fig" rid="Ch1.F7"/> and S2).</p></list-item><list-item>
      <p id="d1e2672">For the clusters' centroid positions, a linear relationship
exists between the horizontal distance from CHC and the height above ground, with those farther away also being located higher in the atmosphere (Figs. <xref ref-type="fig" rid="Ch1.F7"/> and <xref ref-type="fig" rid="Ch1.F10"/>).</p></list-item><list-item>
      <p id="d1e2680">Clusters located closest to CHC have the highest pseudo-PBL
influence, and rather than a linear decrease, the influence of the       pseudo-PBL decreases almost exponentially with increasing distance from
CHC (Fig. <xref ref-type="fig" rid="Ch1.F10"/>).</p></list-item><list-item>
      <p id="d1e2686">The contribution to the SRR is largest for the medium-range
clusters and smallest for the short-range clusters, thus showing no linear relationship with the distance from CHC
(Fig. <xref ref-type="fig" rid="Ch1.F10"/>).</p></list-item><list-item>
      <p id="d1e2692">The short-range clusters have high temporal frequency modulated
by local meteorology driven by the diurnal cycle, whereas the mid- and long-range clusters' variability occurs on timescales governed by
synoptic-scale dynamics (Figs. <xref ref-type="fig" rid="Ch1.F11"/>, <xref ref-type="fig" rid="Ch1.F12"/>,
S4, S5, S6, S7 and S8).</p></list-item></list></p>
      <p id="d1e2699">To conclude, firstly, the method developed here can be applied to many other
long-term monitoring stations.
Secondly, the datasets produced here that provide detailed information about
the sources of air masses sampled at CHC will be applied in forthcoming
studies on the chemical composition measurements made at CHC during the SALTENA
campaign.</p>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title>Additional FLEXPART output pre-processing and clustering
details</title>
      <p id="d1e2713">The purpose of this appendix is to give additional technical details concerning
how the raw FLEXPART output was processed and subsequently clustered.
In addition, more detailed justification for the choices made in this process
is also given here.</p>
<sec id="App1.Ch1.S1.SS1">
  <label>A1</label><?xmltex \opttitle{Vertical ($\Delta z$) FLEXPART output levels}?><title>Vertical (<inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>) FLEXPART output levels</title>
      <p id="d1e2734">The two nested output grids of FLEXPART were defined as described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/>.
The vertical grid was selected to have a constant <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> of 500 m instead of the
customary varying resolution a.g.l. (usually the vertical resolution is higher close to the surface than
aloft).
However, as we are in an area of complex terrain the constant <inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> was chosen
so that comparison of vertical grids for locations with considerably different
ground height a.s.l. is easier.
For example consider the grid cells above CHC (5 km a.s.l.) and La Paz (3.6 km a.s.l.).
If we were to use varying vertical resolution a.g.l.
then an air mass moving along the
same pressure level as CHC would move from a high-resolution vertical
grid to a low-resolution vertical level in less than 20 km (the horizontal
distance from CHC to La Paz).
We selected a <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> of 500 m as a compromise; ideally we want as small as <inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>
as possible near the surface, but to minimize computational cost we want a <inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> as large
as possible and thus fewer vertical levels.
The constant <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> also makes the conversion between a.s.l. and a.g.l. seamless.</p>
</sec>
<?pagebreak page16472?><sec id="App1.Ch1.S1.SS2">
  <label>A2</label><title>Rectangular to log-polar regridding of the SRR matrix (step
3)</title>
      <p id="d1e2808">Since we are in the tropics, it is reasonable to use an equirectangular
projection to a Cartesian coordinate system defined by longitude (long),
latitude (lat) and height above ground level (<inline-formula><mml:math id="M110" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>).
Any point (lat, long, <inline-formula><mml:math id="M111" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>) can be represented in polar cylindrical
coordinates and is given by

                <disp-formula specific-use="gather"><mml:math id="M112" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">long</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">long</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="normal">lat</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">lat</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:msqrt></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mi>tan⁡</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">long</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">long</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mi mathvariant="normal">lat</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="normal">lat</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M113" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> is
the radial distance to the receptor location (<inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">long</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">lat</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), and <inline-formula><mml:math id="M116" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula>
is the clockwise angle starting north from the receptor.
Notice that <inline-formula><mml:math id="M117" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> is the Euclidean distance of lat and long.
The relation between <inline-formula><mml:math id="M118" display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> and the geodesic distance <inline-formula><mml:math id="M119" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula> in kilometres is given by
the approximation
            <disp-formula id="App1.Ch1.S1.Ex4"><mml:math id="M120" display="block"><mml:mrow><mml:mi>d</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>[</mml:mo><mml:mi mathvariant="normal">km</mml:mi><mml:mo>]</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">108.6</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi><mml:mo>/</mml:mo><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:mrow><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi>r</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>(</mml:mo><mml:mo>±</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></disp-formula>
          and is valid for the
whole region covered by the WRF D01 domain.
The radial boundaries of the log-polar grid are separated by a distance
<inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M122" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>.
The radial length <inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>r</mml:mi></mml:mrow></mml:math></inline-formula> of the log-polar cells is <inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi>e</mml:mi><mml:mi>a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M126" display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula> is Euler's number (2.71).
The value of <inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:mi>a</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.18</mml:mn></mml:mrow></mml:math></inline-formula> is chosen so that the log-polar cells approximate a
square with sides <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>r</mml:mi><mml:mo>≈</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:mrow></mml:math></inline-formula>.
The ring radii of the log-polar grid are determined by starting with an initial
ring <inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> of radius 0.08<inline-formula><mml:math id="M130" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">8.7</mml:mn></mml:mrow></mml:math></inline-formula> km).
The choice of the value for <inline-formula><mml:math id="M132" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> should be large enough to allow the first
ring of radial cells to have an area larger than the grid cells in the highest-resolution output from FLEXPART so that at least one original FLEXPART output
grid falls on each radial cell (with this configuration, the 550 km<inline-formula><mml:math id="M133" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> urban
area of La Paz–El Alto is covered by 37 log-polar grid cells).
The following 30 ring radii are obtained iteratively using <inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>r</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi>e</mml:mi><mml:mi>a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e3242">Once the new log-polar grid is defined, the SRR must be regridded from the
original longitude–latitude grid to this new grid.
For each log-polar grid cell, the SRR is obtained by adding the SRR values of
the rectangular grid cells whose centre of mass is contained within the
log-polar grid cell.</p>

      <?xmltex \floatpos{t}?><fig id="App1.Ch1.S1.F15" specific-use="star"><?xmltex \currentcnt{A1}?><?xmltex \def\figurename{Figure}?><label>Figure A1</label><caption><p id="d1e3247">Schematic of the rectangular-to-log-polar regridding.
See Sect. <xref ref-type="sec" rid="App1.Ch1.S1.SS2"/> for a full description.
</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/21/16453/2021/acp-21-16453-2021-f15.png"/>

        </fig>

      <p id="d1e3259">Given the considerable number of data, the regridding procedure needs to be
very computationally efficient.
The straightforward way to regrid the dataset would have been to find the
volume that each rectangular grid shares with each log-polar grid cell and then
distribute the SRR value accordingly.
However this method proved to be computationally too demanding, and an
alternative computationally efficient method with similar logic was devised and
is shown schematically in Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F15"/>.
The alternative method is performed in a procedural manner starting with a
log-polar grid cell in the outermost ring.
The log-polar cell's SRR value is obtained by adding all the rectangular grid
cells (yellow squares in Fig. <xref ref-type="fig" rid="App1.Ch1.S1.F15"/>) from the coarse-resolution
rectangular grid (L1) whose centre falls within the log-polar grid cell.
Then we proceed to obtain the SRR value of all other log-polar grid cells in
the same ring and then continue with the next ring until we reach the innermost ring.
As a rule of thumb, at least 50 rectangular grid cells are required per log-polar grid cell.
If this condition is not met, then the rectangular grid resolution is increased
by splitting each cell into four equal-sized rectangular cells with <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> of the
original SRR value (for example, that is the case for L2, H2, H3 and H4) or, if
available, by choosing a rectangular grid with higher resolution (for example
H1).
In this manner we ensure that each log-polar grid cell is obtained from the
most resolved rectangular grid available, and in the case that the log-polar
grid cell size starts to be comparable to that of the collocated rectangular
grid, then the rectangular grid is subdivided so that the SRR values of the
rectangular grid cells are proportionally mapped onto the log-polar cells.
The output of the regridding is a four-dimensional array: <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="App1.Ch1.S1.SS3">
  <label>A3</label><title>Pre-processing of the SRR matrix (step 4): smoothing,
normalization and filtering</title>
      <p id="d1e3304">The <inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> matrix is smoothed in all four dimensions using SciPy's
Gaussian filter function <xref ref-type="bibr" rid="bib1.bibx60" id="paren.76"/>.
The standard deviations of the Gaussian filter are given for each dimension and
are <inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.25</mml:mn><mml:mo>,</mml:mo><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi mathvariant="italic">θ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula>.
The purpose of smoothing the data is solely to improve the accuracy of the
clustering.
Clustering without smoothing produces very similar results except that when
smoothing is not used, very-low- and intermittent-influence cells are assigned
clusters randomly rather than matching their neighbours.
The smoothing forces these few “problematic” cells to be assigned to the
neighbouring group.
Once the clustering has been performed and each grid cell allocated to a
cluster, the subsequent analysis is performed using the non-smoothed
<inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <?pagebreak page16473?><p id="d1e3383">We are interested in grouping elements depending on their variation over time
rather than their absolute values; therefore we need to normalize the dataset.
We use scikit-learn's <xref ref-type="bibr" rid="bib1.bibx43" id="paren.77"/> quantile transform
function to normalize our elements to a uniform distribution.
This procedure has the advantage of being robust to outliers and also performs
quite well with sparse arrays or semi-sparse arrays like ours.
After this function is applied, the distribution of each element resembles a
uniform distribution with a value range from 0 to 1.
In order to accomplish the normalization, the smoothed <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is
then transformed from a four-dimensional array to a two-dimensional array, which as
one dimension has the arrival time <inline-formula><mml:math id="M141" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> and as the second dimension has all of
the grid cells (<inline-formula><mml:math id="M142" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>): <inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.
This transformation means that the clustering scheme will not know which cells
are neighbours – hence the need to smooth <inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>r</mml:mi><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> while still in
four-dimensional space.
The transformation step (a.k.a. stacking) into a two-dimensional array is
normal in <inline-formula><mml:math id="M145" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means
clustering as it is a requirement of the algorithm.
Quantile mapping is then applied along the time dimension of the 2D array,
<inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, using scikit-learn's quantile mapping function (QuantileTransformer,
default options).
The output of this step is a 2D array with the same dimensions as <inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>;
however instead of the SRR values, the values now range from 0 to 1.
This is denoted <inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e3505">The last step before clustering is to remove the grid points from <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
whose SRR values are either zero or have very little influence, and including
them adds computational burden to the clustering algorithm and does not improve
the results.
However, this also makes scientific sense – we do not want to include grid
cells into any cluster if air from those grid cells never (or very rarely)
arrives in CHC.
In order to decide which elements are not beneficial based on the above
definition, we define a threshold <inline-formula><mml:math id="M150" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula> in the following way.
First, we sum all the SRR values for each of the elements over the time
period.
Then, we sort the element based on their total SRR value and compute the
cumulative SRR values.
Finally, we split this dataset at the point where 85 % of the total SRR
value is reached and discard the remaining 15 %.
This procedure leaves us with 8580 cells out of the total 33 480 in
the grid.
Out of the excluded cells, 24.8 % had a zero SRR total value, and the
total median for the non-zero left-out cells is 2060 s.
The total median for the included 8580 cells is 112 190 s.
The output of this step is <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M152" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> represents the retained grid
points.</p>
</sec>
<sec id="App1.Ch1.S1.SS4">
  <label>A4</label><title>The clustering algorithm</title>
      <p id="d1e3563"><inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">SRR</mml:mi><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> is then used as input to the <inline-formula><mml:math id="M154" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering algorithm.
The aim of <inline-formula><mml:math id="M155" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering is to minimize a distance metric between each
cluster member and the cluster centroid.
Mathematically this is achieved by minimizing the function
            <disp-formula id="App1.Ch1.S1.E6" content-type="numbered"><label>A1</label><mml:math id="M156" display="block"><mml:mrow><mml:mi>J</mml:mi><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>k</mml:mi></mml:munderover><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi></mml:munderover><mml:mo>‖</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:msup><mml:mo>‖</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M157" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is the
number of clusters, <inline-formula><mml:math id="M158" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> is the number of grid points, <inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the <inline-formula><mml:math id="M160" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>th
grid cell, and <inline-formula><mml:math id="M161" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the cluster centroid.
<inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:mo>‖</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:msup><mml:mo>‖</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> is the Euclidean distance, which is the distance metric
used here.</p>
      <p id="d1e3719">The number of clusters, <inline-formula><mml:math id="M163" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>, is first defined, and their centroids' positions
(i.e. cluster centre points) are initially randomly specified.
Each grid cell (element) is then assigned to the cluster to which it is closest based on the Euclidean distance.
Once each element is assigned to a cluster, new centroid positions are
computed.
An iterative procedure then takes place, with the elements re-assigned to
clusters based on the newly computed centroids.
This iteration continues until either convergence is achieved or the maximum
number of iterations is completed.
Convergence is determined by considering the residual of the sum of each
individual Euclidean distance.
The final output of the <inline-formula><mml:math id="M164" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>-means clustering is that each grid cell (element) is
assigned a cluster number.</p>
</sec>
</app>
  </app-group><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e3741"><list list-type="bullet">
        <?xmltex \notforhtml{\item[~]}?>
        <list-item>

      <p id="d1e3748">The SRR cluster time series are publicly available
at <ext-link xlink:href="https://doi.org/10.5281/zenodo.4539590" ext-link-type="DOI">10.5281/zenodo.4539590</ext-link> <xref ref-type="bibr" rid="bib1.bibx1" id="paren.78"/>.</p>
        </list-item>
        <list-item>

      <p id="d1e3760">Both the WRF and FLEXPART raw output datasets are
available upon request.</p>
        </list-item>
        <list-item>

      <p id="d1e3766">The source code for the FLEXPART-WRF model 3.3.2 used in this
study can be downloaded from <uri>https://www.flexpart.eu/downloads</uri> (last access: 12 September 2021).
We modified parts of the original code to adapt it to the complex topography of the domain.
The modified source code can be downloaded from <ext-link xlink:href="https://doi.org/10.5281/zenodo.5516295" ext-link-type="DOI">10.5281/zenodo.5516295</ext-link> <xref ref-type="bibr" rid="bib1.bibx2" id="paren.79"/>.</p>
        </list-item>
        <list-item>

      <p id="d1e3781">The source code for the Advanced Research WRF model version 4.03 <xref ref-type="bibr" rid="bib1.bibx53" id="paren.80"/> used in
this study can be downloaded from <uri>https://www2.mmm.ucar.edu/wrf/users/</uri>.</p>
        </list-item>
      </list></p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e3792">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/acp-21-16453-2021-supplement" xlink:title="pdf">https://doi.org/10.5194/acp-21-16453-2021-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e3801">DA performed the WRF and FLEXPART simulations and did the data analysis.
EK corrected the lake temperature problem and verified the WRF simulations.
DA and VAS wrote the paper with contributions from all authors.
SC and PA performed the sulfate measurements and provided the
quality-controlled sulfate dataset used here.
MA, PL, AW and RK contributed to the development of the GAW station CHC and to the
overall planning for the SALTENA campaign.
FB, VAS and RK conceived the study and led the overall scientific
investigation.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e3807">The authors declare that they have no conflict of interest.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e3814">Publisher’s note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e3820"><list list-type="bullet">
      <?xmltex \notforhtml{\item[~]}?>
      <list-item>

      <p id="d1e3827">We acknowledge CSC – IT Center for Science Ltd. for the
generous allocation of computational resources.</p>
      </list-item>
      <list-item>

      <p id="d1e3833">This study was supported by the UMSA (Universidad Mayor de San
Andrés) through the Laboratory for Atmospheric Physics (LFA) of the Institute for Physics Research. The LFA provided scientific, administrative and logistical support.</p>
      </list-item>
      <list-item>

      <p id="d1e3839">We also acknowledge the financial, administrative and
logistical support from the IRD (Institut de Recherche pour le
Développement) representation in La Paz, Bolivia.</p>
      </list-item>
      <list-item>

      <p id="d1e3845">Paulo Artaxo acknowledges funding from FAPESP – Fundação de Amparo à Pesquisa do Estado de São Paulo.</p>
      </list-item>
      <list-item>

      <p id="d1e3852">Diego Aliaga wishes to thank the many scientists, technicians and personnel involved at the Chacaltaya station, whose outstanding
commitment enables high-quality atmospheric records in a challenging
environment.</p>
      </list-item>
      <list-item>

      <p id="d1e3858">Diego Aliaga thanks Sara Blichner for valuable input during the writing process.</p>
      </list-item>
    </list></p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e3865">This research has been supported by the European Commission, H2020 Research Infrastructures (CHAPAs grant no. 850614); the Finnish Centre of Excellence, Academy of Finland (project nos. 311932, 315203 and 337549); the Institut de Recherche pour le Développement (Labex OSUG@2020); and the Fundação de Amparo à Pesquisa do Estado de São Paulo (grant no. 2017/17047-0).<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Open-access funding was provided by the Helsinki<?xmltex \notforhtml{\newline}?>
University Library.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e3876">This paper was edited by Jerome Brioude and reviewed by two anonymous referees.</p>
  </notes><ref-list>
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