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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-19-259-2019</article-id><title-group><article-title>Characterizing the 2015 Indonesia fire event using modified MODIS aerosol
retrievals</article-title><alt-title>Characterizing the 2015 Indonesia fire event</alt-title>
      </title-group><?xmltex \runningtitle{Characterizing the 2015 Indonesia fire event}?><?xmltex \runningauthor{Y. R. Shi et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff3">
          <name><surname>Shi</surname><given-names>Yingxi R.</given-names></name>
          <email>yingxi.shi@nasa.gov</email>
        <ext-link>https://orcid.org/0000-0001-5488-0777</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Levy</surname><given-names>Robert C.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8933-5303</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff3">
          <name><surname>Eck</surname><given-names>Thomas F.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Fisher</surname><given-names>Brad</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3857-3643</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Mattoo</surname><given-names>Shana</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Remer</surname><given-names>Lorraine A.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4333-533X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Slutsker</surname><given-names>Ilya</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Zhang</surname><given-names>Jianglong</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8647-3519</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>NASA Goddard Space Flight Center, Greenbelt, MD, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>SSAI, Lanham, MD, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>GESTAR, USRA, Columbia, MD, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>UMBC/JCET, Baltimore, MD, USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>UND, Grand Forks, ND, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Yingxi R. Shi (yingxi.shi@nasa.gov)</corresp></author-notes><pub-date><day>8</day><month>January</month><year>2019</year></pub-date>
      
      <volume>19</volume>
      <issue>1</issue>
      <fpage>259</fpage><lpage>274</lpage>
      <history>
        <date date-type="received"><day>10</day><month>May</month><year>2018</year></date>
           <date date-type="rev-request"><day>20</day><month>June</month><year>2018</year></date>
           <date date-type="rev-recd"><day>2</day><month>November</month><year>2018</year></date>
           <date date-type="accepted"><day>14</day><month>November</month><year>2018</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>
      <abstract>
    <p id="d1e171">The Indonesian fire and smoke event of 2015 was an extreme episode that
affected public health and caused severe economic and environmental damage.
The MODIS Dark Target (DT) aerosol algorithm, developed for global
applications, significantly underestimated regional aerosol optical depth
(AOD) during this episode. The larger-than-global-averaged uncertainties in
the DT product over this event were due to both an overly zealous set of masks
that mistook heavy smoke plumes for clouds and/or inland water, and also an
aerosol model developed for generic global aerosol conditions. Using Aerosol
Robotic Network (AERONET) Version 3 sky inversions of local AERONET stations,
we created a specific aerosol model for the extreme event. Thus, using this
new less-absorbing aerosol model, cloud masking based on results of the MODIS
cloud optical properties algorithm, and relaxed thresholds on both inland
water tests and upper limits of the AOD retrieval, we created a research
algorithm and applied it to 80 appropriate MODIS granules during the event.
Collocating and comparing with AERONET AOD shows that the research algorithm
doubles the number of MODIS retrievals greater than 1.0, while also
significantly improving agreement with AERONET. The final results show that
the operational DT algorithm had missed approximately 0.22 of the regional
mean AOD, but as much as AOD <inline-formula><mml:math id="M1" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3.0 for individual 0.5<inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid
boxes. This amount of missing AOD can skew the perception of the severity of
the event, affect estimates of regional aerosol forcing, and alter aerosol
modeling and forecasting that assimilate MODIS aerosol data products. These
results will influence the future development of the global DT aerosol
algorithm.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e197">Extreme aerosol events, as a result of severe biomass burning, have large
regional and global impacts. The biomass burning causes destruction in
ecosystems, disruption to economics, and harms public health. For example,
the El Niño-related 2015 Indonesia fire (Field et al., 2016) event released
1750 million metric tons of carbon dioxide, which is equal to 5.5 % of
the global carbon emission from fossil fuel and industrial processes in 2010
(Parker et al., 2016; Glauber and Gunawan, 2016; IPCC, 2014). The 5 months
of burning also caused significant economic and environmental damage,
including USD 16.1 billion in economic
losses (Glauber and Gunawan, 2016), 2.6 million hectares of Indonesian land
burned, and destruction of fragile peatland ecosystems (Lohberger et
al., 2017). Studies also show that public health was harmed via accumulated
and/or transported smoke (Marlier et al., 2015; Crippa et al.,
2016). The long-term effects
of the smoke are estimated to have caused an additional 100 000 mortalities
across Indonesia, Malaysia, and Singapore (Koplitz et al., 2016).</p>
      <p id="d1e200">Due to the vast destruction and long-lasting impacts, the research, applied
science and policy communities have attempted to observe, understand,
simulate, and predict events<?pagebreak page260?> like the Indonesian fires. Satellite aerosol
products are one important data source used by a wide range of disciplines in
general studies of fire and smoke. Examples of applications of satellite
products include fire intensity estimation (Petrenko et al., 2012), aerosol
transport modeling and visibility forecasts (Collins et al., 2001; Zhang et
al., 2008), air quality prediction (Al-Saadi et al., 2005; Wang and
Christopher, 2003), and human health assessments (Van Donkelaar et al., 2010;
Lighty et al., 2000). Satellite aerosol products, especially those derived
from the passive sensors, have difficulties retrieving aerosol signals when
the smoke plumes are very optically thick (Van Donkelaar et al., 2011; Zhang
et al., 2016; Witte et al., 2011). Very optically thick aerosol plumes,
defined as having aerosol optical depth (AOD, symbol <inline-formula><mml:math id="M3" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula>) greater than
3.0, which may have high visible reflectance and high spatial variability
near the source region, could be misclassified as clouds or other features.
By excluding these optically thick aerosol data, this misclassification can
introduce a low bias in aerosol regional climatology and further influence
other studies that rely on satellite data. In particular the aerosol modeling
and aerosol data assimilation efforts to model and predict the consequences
of these events for air quality and visibility forecasts will be misled due
to this low bias in the “observed” quantities (Zhang et al., 2006;
Benedetti et al., 2009; Chung et al., 2010). This was indeed the case during
the Indonesian smoke event of 2015.</p>
      <p id="d1e210">In this study, we focused on a domain and temporal period defined as <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> to
10<inline-formula><mml:math id="M5" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and 95 to 125<inline-formula><mml:math id="M6" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E from August to October 2015 when
intense burning existed. We noted that the operational MODerate Resolution
Imaging Spectroradiometer (MODIS) aerosol products had trouble capturing the
complete picture of aerosol loading during the 2015 Indonesia burning event.
Therefore, we developed a research algorithm to address this problem and to
bring back those missing retrievals. This research algorithm is based on the
operational Dark Target (DT) aerosol algorithm but modified with a new cloud
mask and a new aerosol model generated from local AERONET inversion products.
We applied the new research algorithm and evaluate results against AERONET
version 3 AOD. Using the newly developed research product, we investigated
how our regional climatology was modified. Statistical analyses were also
conducted to understand the aerosol distribution over this event.</p>
</sec>
<sec id="Ch1.S2">
  <title>Remote sensing of aerosol and clouds over Indonesia</title>
<sec id="Ch1.S2.SS1">
  <title>MODIS Dark Target aerosol algorithm</title>
      <p id="d1e252">The MODIS Dark Target algorithm for retrieving aerosol properties over land
utilizes three wavelengths (0.47, 0.66, and 2.1 <inline-formula><mml:math id="M7" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m) over dark
vegetation-covered land surfaces following the lookup table (LUT) method
(Levy et al., 2007a, b, 2013). The algorithm applies two fundamental
assumptions that allow constraint of surface reflectance and aerosol
properties (aerosol model) in order to retrieve the AOD. The first assumption
concerns estimating the surface reflectance, referring to an assumed
relationship between the surface reflectance at 2.1 <inline-formula><mml:math id="M8" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m and the
surface reflectance in the visible (Levy et al., 2007b). The second
assumption concerns predetermining a fine-mode aerosol model prescribed for
every season and region. Prior knowledge of the aerosol model is determined via
global analyses of AERONET sky radiance inversion products before
February 2005 (Levy et al., 2007a). Based on the reported dominant aerosol
type at AERONET sites at that time, regions seasonally dominated by
“strongly absorbing” or “nonabsorbing” aerosol types are identified and
set aside, while everywhere else is assigned the “moderately absorbing”
aerosol model. There were no AERONET sites established in or near Indonesia
before 2005. Thus, the preselected aerosol model for Indonesia in the
operational DT algorithm is the moderately absorbing aerosol model with a
single scattering albedo of 0.92 (Levy et al., 2007a).</p>
      <p id="d1e269">The MODIS DT algorithm first groups the input radiances into arrays of <inline-formula><mml:math id="M9" display="inline"><mml:mrow><mml:mn mathvariant="normal">20</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> pixels at 500 m resolution, which is nominally a 10 km box at
nadir. Within this retrieval box the algorithm proceeds with a cascade of
screening procedures to remove pixels that will violate the fundamental
assumptions about surface properties and aerosol model. These screening
procedures include a cloud mask, a snow and ice filter, an inland water test,
and elimination of bright surfaces. Two masks that are particularly relevant
for our situation of thick smoke over Indonesia are the cloud mask and inland
water test. The DT cloud screening procedure relies on tests that compare the
absolute value and the spatial variability of top-of-atmosphere (TOA)
reflectance at 0.47 <inline-formula><mml:math id="M10" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m at 500 m resolution with a threshold value.
Pixels that are “too bright” or “too variable” are masked as clouds. In
addition, the algorithm makes use of the 1.38 <inline-formula><mml:math id="M11" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m TOA reflectance at
1k̇m resolution to identify and mask cirrus.</p>
      <p id="d1e298">The inland water mask is basically the Normalized Difference Vegetation Index
(NDVI), defined as Eq. (1):

                <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M12" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">NDVI</mml:mi><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0.87</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0.66</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0.87</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0.66</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math id="M13" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> is the reflectance at TOA at 0.87 and 0.66 <inline-formula><mml:math id="M14" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, as
subscripted. In addition to separating vegetated and nonvegetated surfaces,
NDVI is sensitive to a thin layer of water on the surface, such as snow
melting or swamp surfaces. NDVI can also be used to remove pixels near cloud
edges. The operational DT algorithm requires <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mi mathvariant="normal">NDVI</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> for the
retrieval to be performed, which enables the identifications of “ideal”
dark-land targets for DT retrieval and avoids situations that would introduce
large uncertainties in the retrieval.</p>
      <p id="d1e375">After the screening process has removed clouds and various other surfaces in
violation of the algorithm's assumptions, the retrieval returns to the
remaining “good” pixels in the 10 km retrieval box and discards the
brightest 50 % and the darkest 20 % of these qualified pixels,
defined using the reflectance at 0.66 <inline-formula><mml:math id="M16" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. If there are at least
12 pixels remaining after this vigorous selection process, these<?pagebreak page261?> remaining
pixels are aggregated to produce the average TOA spectral reflectance
representative of the 10 km box. From this aggregation, the inversion is
performed based on the pre-calculated LUT. The pre-calculated LUT only
extends to AOD of 5.0 (at 0.55 <inline-formula><mml:math id="M17" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m). For an algorithm that aims to
retrieve aerosol globally, this AOD cap is reasonable (Remer et al., 2008).
The retrieved DT AOD over land has an expected uncertainty of <inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">15</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">%</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">AOD</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e417">While these assumptions and screening procedures are appropriate for a
global, operational Collection 6 (C6) DT algorithm, we have found that there
are exceptional situations. The Indonesian smoke event is one of these
exceptional situations that require modification of the operational DT
algorithm to obtain accurate retrievals (or even to retrieve in the first
place). Without modifying the global thresholds for masking, the missing
retrievals will lead to a product with a statistically low bias. In
developing these modifications, we will require additional information from
other sensors and algorithms to identify heavy smoke plumes, help separate
aerosol from cloudy scenes and provide information about aerosol optical
properties, as well as provide validation for any improvements we implement.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>MODIS Deep Blue aerosol algorithm</title>
      <p id="d1e426">There is a second MODIS aerosol retrieval algorithm known as Deep Blue (DB).
The MODIS DB algorithm was first designed to retrieve aerosol over arid and
semi-arid regions and later was later extended to vegetated surfaces (Hsu et
al., 2006, 2013). The DB method, in part, relies on aerosol light absorption
for such aerosol types as dust and smoke at 0.412 and 0.47 <inline-formula><mml:math id="M19" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m
wavelengths. Instead of aggregating the TOA reflectance to 10 km resolution
first, the DB algorithm retrieves AOD at 1 km resolution then aggregates AOD
to 10 km. The DB algorithm uses a pre-existing database of surface
properties based on location, season, scattering angle, and the greenness of
the ground (Hsu et al., 2013). The reported uncertainties of the highest
quality DB retrievals (QA <inline-formula><mml:math id="M20" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3) are defined as in Eq. (2):
            <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M21" display="block"><mml:mrow><mml:mo>±</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:mfenced close="]" open="["><mml:mrow><mml:mn mathvariant="normal">0.086</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.56</mml:mn><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">DB</mml:mi></mml:msub></mml:mrow></mml:mfenced><mml:mo mathsize="1.1em">/</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="italic">μ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mi mathvariant="italic">μ</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">μ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M23" display="inline"><mml:mi mathvariant="italic">μ</mml:mi></mml:math></inline-formula> are the cosine of the solar and view zenith
angles, respectively (Sayer et al., 2013). In this study we used DB in a
case study to illustrate that both aerosol products (DT and DB) from MODIS
have problems retrieving a complete image of AOD when optically thick smoke
exist.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>OMI UV aerosol index</title>
      <p id="d1e513">Although optically thick smoke looks very similar to clouds throughout most
of the visible spectrum, smoke and clouds appear very different at both
shorter (ultraviolet, UV) and longer (near-IR, NIR) wavelengths. Due to
their strong absorption in the UV and near-UV wavelengths, smoke particles
can be easily detected using observations in the UV spectrum, such as the
Ozone Monitoring Instrument (OMI) UV aerosol index (AI).</p>
      <p id="d1e516">The Ozone Monitoring Instrument is installed on the Aura satellite, which is
part of the A-train constellation that follows Aqua (crossing the Equator at
approximately 13:30 local solar time). OMI spans a broad swath of 2600 km
with a hyperspectral coverage from UV to visible (0.264 to
0.504 <inline-formula><mml:math id="M24" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m) with a spatial resolution of <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:mn mathvariant="normal">13</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">24</mml:mn></mml:mrow></mml:math></inline-formula> km at nadir
(Levelt et al., 2006). In this study, we use the UV AI, which
is reported within the OMI OMAERUV product (Torres et al., 2007, 2013).
Near-zero AI values indicate clouds. Positive AI values represent the
presence of UV-absorbing aerosols that can be black carbon, mineral dust, or
volcanic ash. Some non-UV-absorbing small aerosol particles such as sulfate
aerosols can also result in small negative AI, but the signal is much
weaker. Because OMI and MODIS have different spatial resolutions and fields
of view, we use the OMI–MODIS collocation aerosol product (OMMYDAGEO),
developed by the OMI science team. The OMMYDAGEO product provides the OMI along-track and cross-track indices for every overlapping pixel in the MODIS
granule at both 3 and 10 km resolution for the two Level 2 MODIS aerosol
products, MYD04_L2 and MYD04_3km (Joiner, 2017).</p>
      <p id="d1e538">In this study, the OMI AI is used to identify heavy biomass burning and smoke
plumes at coarse resolution. Strong positive AI values over Indonesia
indicate the potential presence of heavy smoke aerosols, although high AI
values may also indicate aerosol above or aerosol mixed with cloud cases.
Thus, OMI AI values are only used as the first step for identifying heavy
smoke plumes that can further be “rescued”. Note that the OMI instrument
suffers a row anomaly issue after 2008, which results in data gaps within a
granule (OMIRA Team, 2012). The impact of missing AI data introduced by the
row anomaly on this study is discussed in detail at the end of Sect. 4.0.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>MODIS cloud optical properties algorithm</title>
      <p id="d1e547">Smoke particles are much smaller in size than cloud particles, so smoke
particles appear nearly transparent at longer wavelengths. Thus, in tandem
with using shorter UV wavelengths (OMI AI) to identify potential smoke
plumes, observations from infrared (IR) and near-IR channels can be used to
exclude aerosol above or mixed with cloud scenes. The MODIS cloud optical
properties algorithm uses visible, near-IR, and thermal IR channels to
retrieve cloud physical and radiative properties at 1 km resolution
(Platnick et al., 2003; NASA, 2018). Examples of the retrieved parameters are
cloud thermodynamic phase, cloud particle effective radius, and cloud optical
thickness along with retrieval quality flags. Like the DT algorithm, the
cloud algorithm makes assumptions about the scene it is retrieving. When
those assumptions are violated the retrieval fails and returns an error flag.
The first assumption to be tested is that the scene must contain a valid
cloud-top pressure, which is derived using thermal IR<?pagebreak page262?> channels. Then there
are three diagnostic quality flags in the C6 cloud optical properties product
(MYD06) indicating that the retrieval of cloud droplet or crystal effective
radius failed at one of these three wavelengths, 1.6, 2.1 and
3.7 <inline-formula><mml:math id="M26" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. If there is no cloud in the scene and only smoke, there may
be no valid cloud-top pressure retrieved, and the cloud optical properties
algorithm will not produce a retrieval. Even if a retrieval is attempted on
the smoke, smoke particle sizes are orders of magnitude smaller than cloud
droplet or crystal sizes. The cloud effective radius retrievals will be out
of bounds of the assumptions, the retrieval will fail and the diagnostic
flags will be set to false. Thus, these metrics and the lack of a cloud
retrieval can be used to separate smoke from clouds (Gala Wind, personal
communication, 2017).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p id="d1e559">Locations of the five AERONET sites that are used in this study from
Google Maps. 1: Jambi (<inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M28" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 103<inline-formula><mml:math id="M29" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E); 2: Kuching
(1<inline-formula><mml:math id="M30" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 110<inline-formula><mml:math id="M31" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E); 3: Palangkaraya (<inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M33" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N,
113<inline-formula><mml:math id="M34" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E); 4: Pontianak (0<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 109<inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E); and 5:
Singapore (1<inline-formula><mml:math id="M37" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 103<inline-formula><mml:math id="M38" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E).</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f01.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS5">
  <title>AERONET sun and sky aerosol products</title>
      <p id="d1e684">The AErosol RObotic NETwork (AERONET) is a global aerosol-monitoring network
of sun- and sky-observing radiometers that is commonly used as a benchmark
for validating satellite-retrieved AOD (Holben et al., 1998; Levy et al.,
2010, 2013; Remer et al., 2005; Sayer et al., 2013; Zhang and Reid, 2006; Shi
et al., 2011). The instruments measure attenuated solar energy through two
modes: direct sun and scanning sky (Holben et al., 1998). The direct sun
measurement mode provides an observation of spectral AOD every 3 or 15 min
(depending upon instrument version and settings). Multiple quality assurance
steps as well as vigorous cloud screening procedures are applied to the
version 2 Level 2.0 AOD data to ensure a high-quality data set. However, the
cloud screening removes many high AOD observations and introduces a low bias
to the version 2 data set (Eck et al., 2018a). Thus, to validate our research
algorithm described in this paper we turn to the version 3 AERONET level 2
data that specifically include these high AOD cases (Eck et al., 2018a, b;
Holben et al., 2016). This is particularly important for the heavy smoke
during the Indonesian event studied here. The version 3 AERONET data also
tend to have less thin cirrus contamination and better quality-control
algorithms than version 2. The AOD uncertainty in version 3 Level 2 data is
practically the same as in Version 2, which is <inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.01</mml:mn></mml:mrow></mml:math></inline-formula> in the visible and
near-IR wavelengths and increasing to <inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula> in the UV (Eck et al.,
1999). Cloud screening in Version 3 is described briefly in Eck et
al. (2018b) and in depth in a future paper (David Giles, personal
communication, 2018). In this study, we will use data from the following
AERONET sites: Jambi, Palangkaraya, Kuching, Pontianak, and Singapore.
Figure 1 shows the geolocation of these five sites.</p>
      <p id="d1e707">Besides using AERONET AOD products from the direct sun measurements for
validation of satellite AOD, we also make use of the AERONET inversion
products from the sky scanning measurements. Aerosol inversion products
include aerosol microphysical properties such as particle size distribution,
complex refractive index, and phase function (Dubovik and King, 2000; Dubovik
et al., 2002, 2006). We use inversions from the almucantar-mode sky
measurements to build a regional smoke aerosol model. The almucantar mode is
a series of measurements of the sky, spanning all azimuthal angles (0 to <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">180</mml:mn></mml:mrow></mml:math></inline-formula><inline-formula><mml:math id="M42" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>), at a fixed zenith angle equal to the solar zenith angle
(SZA). This creates a set of measurements across a range of scattering angles
(Holben et al., 1998). The limitation of the almucantar mode is that when SZA
is smaller than 50<inline-formula><mml:math id="M43" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>, the range of scattering angles is small, leading
to potentially large measurement error (Holben et al., 2006). Holben et
al. (2006) recommends a threshold of <inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:mi mathvariant="normal">AOD</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.4</mml:mn></mml:mrow></mml:math></inline-formula> at
0.44 <inline-formula><mml:math id="M45" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m for quality assurance of the AERONET inversion products; we
followed the procedures of Holben, but used a stricter AOD threshold of
<inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:mi mathvariant="normal">AOD</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.4</mml:mn></mml:mrow></mml:math></inline-formula> at 0.675 <inline-formula><mml:math id="M47" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Case study: an intense high-AOD smoke event on 22 September 2015</title>
      <p id="d1e783">To illustrate how missing retrievals can create a low bias in regional MODIS
AOD estimates, we focus on a fire event that took place near Kalimantan on
the island of Borneo on 22 September 2015. Figure 2a shows the MODIS RGB
image cropped to <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> to 5<inline-formula><mml:math id="M49" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> latitude and 105 to 120<inline-formula><mml:math id="M50" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
longitude. Significant smoke aerosol plumes, in yellowish grey color, can be
observed across the image and are clearly distinguishable from the white
clouds observed surrounding the smoke plume. The Palangkaraya AERONET site
(marked with a blue star) within this scene is under extremely high smoke
concentrations on this day. In fact, the AOD is so high at this site and date
that there is no signal at 500 nm and even at 675 nm for most of the day
(nearly complete attenuation). The AOD at 875 nm averaged 4.3 over the
nearly 2 h of available measurements, and the average Ångström exponent from
870 to 1640 nm over this same interval was 1.85, thus indicating fine-mode
smoke particles and not cloud contamination. Figure 2b and d show the
corresponding aerosol retrievals from the DT and DB aerosol products and
Fig. 2c shows the OMI AI values. Note that all retrievals from DT and DB
aerosol products are used here without further quality assurance filtering.
Over heavy aerosol regions that have OMI AI values exceeding 3.0, aerosol
retrievals are mostly missing from the MODIS DT aerosol products and are
partially missing from the MODIS DB aerosol products. Figure 2 demonstrates
that passive sensor observations in visible wavelengths may have trouble
separating heavy aerosol plumes from clouds. In comparison, the OMI AI can be
used effectively to qualitatively detect thick UV-absorbing aerosol plumes
that are missed by MODIS DT and DB aerosol products. However, only using OMI
AI cannot identify smoke above clouds and thus, further analyses are
performed to separate aerosols from clouds.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p id="d1e816">A case study of a fire in Kalimantan on the island of Borneo in
Indonesia on 22 September 2015. <bold>(a)</bold> RGB image, <bold>(b)</bold> MODIS DT
operational image AOD, <bold>(c)</bold> OMI AI, <bold>(d)</bold> MODIS DB all
available AOD, <bold>(e)</bold> NDVI value, and <bold>(f)</bold> cloud product
diagnostic flags taken from the MODIS cloud optical properties product. In
<bold>(e)</bold> NDVI values smaller than 0.01 are shown in light aqua and values
greater than 0.15 are shown in white. In <bold>(f)</bold> the red denotes pixels
where the cloud product has failed. These are overlain on top of the MODIS
true color image. The blue star represents the AERONET site Palangkaraya.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f02.png"/>

      </fig>

      <?pagebreak page263?><p id="d1e850"><?xmltex \hack{\newpage}?>The MODIS DT algorithm fails to retrieve AOD over the thickest part of the
plume, because the NDVI mask and the internal cloud mask have filtered out
the optically thick smoke pixels. Within the region where heavy smoke plumes
exist, the NDVI value ranges from 0.0 to 0.1 (Fig. 2e), which is below the
operational threshold of 0.1 (in Fig. 2e only regions colored white and red
passed the NDVI threshold). As we mentioned before, the threshold of
<inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:mi mathvariant="normal">NDVI</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> is set to ensure an optimum retrieval condition, which
will require adjustment to allow retrievals over optically thick smoke. The
operational internal cloud mask also screens out the smoke plume. Thus, a
“call back” method is needed to distinguish aerosols from clouds in regions
where thick plumes exist. As described in Sect. 2.4, based on the differences
between particle sizes of aerosols and clouds, the MODIS cloud optical
property retrievals typically fail when applied to optically thick smoke
regions, and these failures are recorded in diagnostic flags. Note that the
diagnostic flags are only available when a scene is a priori identified as a
cloud. Thus, these diagnostic flags will only help detect misidentified smoke
plumes when the aerosol is sufficiently thick to resemble a cloud by other
tests. We examine these diagnostic flags from the MODIS cloud product at
1 km resolution. If no successful cloud retrieval is reported for attempts
made using any of the three possible wavelengths, we consider the pixel to be
an aerosol-polluted, cloud-free pixel. Examples of those misidentified smoke
pixels are shown in red in Fig. 2f. Plotted on top of the true color image,
red pixels are pixels with failed cloud retrievals and are only visible above
optically thick aerosol plumes (Fig. 2f). Thus, these metrics will be used in
combination with the aerosol algorithm's operational cloud mask to identify
cloud-free scenes with low to moderate aerosol loading and to reclassify
scenes as cloud-free in high aerosol loading when the operational mask
initially designates the scene as cloudy.</p>
      <p id="d1e866">This case study demonstrates that the standard MODIS DT aerosol algorithm is
missing a large fraction of the heavy smoke from Indonesian fires in 2015,
partially due to very low NDVI values over the thick smoke regions and
partially due to a very stringent cloud screening algorithm. This case study
also suggests that OMI AI is able to identify the heavy smoke unencumbered
by these constraints and that the MODIS cloud optical properties product can
be used for distinguishing between heavy smoke and clouds.</p>
</sec>
<sec id="Ch1.S4">
  <title>An aerosol algorithm for heavy smoke</title>
      <p id="d1e875">Based on the case study, we have investigated a method for “rescuing” heavy
smoke pixels for the operational MODIS DT products. This process is initiated
by constructing a NDVI mask. Note a NDVI threshold of 0.1 is used in the
operational MODIS DT algorithm. For regions with NDVI values in between
<inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula> to 0.1, observed areas could include one of the following scenarios
such as coastal areas, surface with standing water, arid or desert surfaces,
urban surfaces with haze, aerosols near cloud edges, and very optically thick
aerosol plumes. The study region does not contain a large fraction of deserts
or highly urban surfaces. Thus, regions with NDVI values less than 0.1 are
likely to be regions such as coastal areas, aerosols near cloud edges, and
very optically thick aerosol plumes. Furthermore, sensitivity studies (not
shown) suggest that an NDVI threshold of 0.01 can be effectively used to
remove coastal regions while maintaining most of the optically thick aerosol
plumes (e.g., see Fig. 2e).<?pagebreak page264?> Thus, pixels with NDVI values of 0.01–0.1 are
considered as potential thick smoke aerosol pixels and are selected for
further study.</p>
      <p id="d1e888">Correspondingly, a modified cloud mask is also implemented. Here, a pixel is
identified as suitable for applying aerosol retrieval algorithm if one or
both of the following criteria are met: (a) the pixel passed the cloud
screening steps based on the aerosol DT algorithm or (b) the pixel is both
identified as a “cloud pixel” by the operational aerosol DT algorithm and
also failed to produce a cloud optical property retrieval based on the cloud
diagnostic flags. In this way, some pixels that were previously removed due
to cloud screening steps are reconsidered for aerosol retrievals. The
modified cloud screening method as described above can still identify cloud
pixels outside the heavy smoke regions. Within the heavy smoke regions, smoke
pixels that were previously misidentified as “cloud pixels” can be
successfully labeled as smoke pixels, with the use of the modified cloud
screening method.</p>
      <p id="d1e891">In addition, AOD at 0.55 <inline-formula><mml:math id="M53" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m (AOD<inline-formula><mml:math id="M54" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub></mml:math></inline-formula>) of 5 is currently used
as the upper limit for the operational MODIS DT retrievals. Retrievals that
require extrapolation beyond AOD <inline-formula><mml:math id="M55" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 5 return a fill value and are not
retrieved. Thick smoke plumes for the study period can have AOD values
exceeding this threshold. Thus, we explored removing this upper limit. With
this change, the algorithm is allowed to extrapolate the LUT to retrieve
higher AOD values. However, due to the limited sensitivity of the MODIS
sensor under very thick smoke plume conditions, we found that the retrieval
had little skill at distinguishing between different AODs greater than 5.
Therefore, we continue to constrain AOD to 5 in our validation, which means
all retrieved AOD greater than 5 are assigned to 5 during the validation. We
understand that this requirement could introduce underestimation of AOD
because AERONET has reported AODs greater than 5 during this event;
however, we took this precautious step due to the limitation in MODIS sensor.</p>
      <p id="d1e917">Besides the above steps to enable aerosol retrievals over thick smoke
plumes, an additional step is also implemented to improve retrieval
accuracy. A localized aerosol model is needed for retrievals with very high
AOD values as small changes in aerosol properties can introduce large errors
in AOD retrievals (Ichoku et al., 2003). Thus, we will re-examine the
aerosol model used by the operational algorithm for the region of interest
for the given season. The “moderately absorbing fine mode aerosol model”
(Levy et al., 2007a) is used for this region in the current operational
MODIS DT algorithm. This is a generic model derived from data in other parts
of the world and never specifically evaluated for smoke aerosols in
Indonesia.</p>
      <p id="d1e921">When the operational DT aerosol models were first developed (Levy et al.,
2007a), there were insufficient AERONET sites available for deriving a
region-specific aerosol model for Indonesia. Now there are AERONET stations
in Indonesia that are active during the smoke season. In this study, a
localized smoke aerosol model is developed by using AERONET-derived (Version 3,
Level 2) size distribution and the refractive index for the study
period of August to October 2015 for the five stations identified in Fig. 1.
The size distribution and the refractive index are analyzed as functions of
AOD at 0.675 <inline-formula><mml:math id="M56" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m (AOD<inline-formula><mml:math id="M57" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.675</mml:mn></mml:msub></mml:math></inline-formula>). Figure 3 shows the volume size
distributions of 163 inversions divided into 22 particle radii sorted as a
function AOD<inline-formula><mml:math id="M58" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.675</mml:mn></mml:msub></mml:math></inline-formula> into bins of 0–0.2, 0.2–0.4, 0.4–0.7, 0.7–1.0,
1.0–1.5, 1.5–2.0, and 2.0–3.0, with the mean of each bin plotted. Note
that there is a systematic relationship between particle size distribution
and AOD, with fine particle median effective radius (<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi>v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) increasing with
increasing AOD<inline-formula><mml:math id="M60" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.675</mml:mn></mml:msub></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p id="d1e971">Size distribution as a function of AERONET AOD at
0.675 <inline-formula><mml:math id="M61" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, generated from the AERONET inversion products at the five
sites in Indonesia during August to October 2015. There are 163 total
retrievals used in this plot separated into bins of AOD. The number of
retrievals within each AOD bin is shown in parentheses in the label. The
error bars represent the standard deviation within each size bin.</p></caption>
        <?xmltex \igopts{width=156.490157pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f03.png"/>

      </fig>

      <p id="d1e987">Figure 4 shows the spectral dependence of the real and imaginary parts of the
refractive index for all inversions and sorted as a function of
AOD<inline-formula><mml:math id="M62" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.675</mml:mn></mml:msub></mml:math></inline-formula>. Not all AERONET<?pagebreak page265?> inversions with size distribution also have
a refractive index. There are overall fewer retrievals of the refractive index and
therefore these are grouped into only three bins, with the mean of each bin
plotted. Also, only AERONET refractive index values, with corresponding
AOD<inline-formula><mml:math id="M63" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.675</mml:mn></mml:msub></mml:math></inline-formula> larger than 0.4, were used in this study to ensure that aerosol
signal is significant enough to retrieve these parameters. This is actually more
conservative than the AERONET team recommendations of using inversion
products with AOD at 0.44 <inline-formula><mml:math id="M64" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m <inline-formula><mml:math id="M65" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 0.4 (Holben et al., 2006).
Figure 4 shows that, unlike size distribution, there is no systematic relationship
between refractive index and AOD in this data set. The variability in each
AOD bin exceeds the differences between the bins. Thus, we use single mean
values for the real and imaginary parts of the refractive index in our
regional aerosol model. Particularly, we calculated averaged refractive index
and interpolated to 0.55 <inline-formula><mml:math id="M66" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. The real part of the refractive index
is interpolated linearly, while the imaginary part is interpolated using
logarithms from 0.44 and 0.675 <inline-formula><mml:math id="M67" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m (Lee et al., 2017). The lack of
AOD dependency in refractive index is possibly due to the limited sample size
of this data set that is not representative of the full range of conditions
experienced during the season. There are very few AERONET inversion products
for AOD<inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.675</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">2.0</mml:mn></mml:mrow></mml:math></inline-formula> during the burning season, and yet from AERONET
direct sun observations of AOD and satellite retrievals we know that the
AOD<inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.675</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">2.0</mml:mn></mml:mrow></mml:math></inline-formula> is common. One significant source of uncertainty in the
research algorithm being developed here is the extrapolation of these
constant refractive indices beyond the range of their formulation data set to
represent smoke optical properties for AOD's <inline-formula><mml:math id="M70" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 2.0.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p id="d1e1074">The real and imaginary parts of refractive index as a function of
AOD at 0.675 <inline-formula><mml:math id="M71" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m calculated from the AERONET inversion product over
the five sites in Indonesia during August to October 2015. The error bars
represent the standard deviation within each wavelength. A total of 113 data
points are used to generate this plot, 56 retrievals in AOD 0.4–1.0, 50
retrievals in AOD 1.0–2.0, and 7 retrievals in AOD 2.0–3.0.</p></caption>
        <?xmltex \igopts{width=156.490157pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f04.png"/>

      </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e1094">Optical properties of the aerosol model used by the operational DT
algorithm over the Indonesian region and the regional smoke model (less
absorbing model) generated in this study using AERONET inversion products
August to October 2015. A dash (–) indicates that no change is made between
the two aerosol models</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Model</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mi>v</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M73" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,</oasis:entry>
         <oasis:entry colname="col5">Real part of</oasis:entry>
         <oasis:entry colname="col6">Imaginary part of</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M75" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M76" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m<inline-formula><mml:math id="M77" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M78" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m<inline-formula><mml:math id="M79" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">refractive index</oasis:entry>
         <oasis:entry colname="col6">refractive index</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Moderate</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.020</mml:mn><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.145</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.1365</mml:mn><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.374</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.1642</mml:mn><mml:msup><mml:mi mathvariant="italic">τ</mml:mi><mml:mn mathvariant="normal">0.775</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5">1.43</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.002</mml:mn><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.008</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">absorbing</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Regional less</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.040</mml:mn><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">0.160</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">–</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">1.47</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.0038</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">absorbing</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p id="d1e1376"><bold>(a)</bold> Research AOD at 0.55 <inline-formula><mml:math id="M86" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m retrieved from the
case study of 22 September 2015 using altered thresholds on the NDVI test,
cloud mask, upper bound limits of the retrieval and a new regional aerosol
model. <bold>(b)</bold> The differences between the research AOD
(panel <bold>a</bold>) and the DT AOD (Fig. 2b). The increased research AOD data
coverage is shown in green.</p></caption>
        <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f05.png"/>

      </fig>

      <p id="d1e1400">Table 1 shows the comparison between the fine mode of the operational model
that is used over the Indonesia region and the newly generated smoke model.
The natural logarithm of the standard deviation of the radius (<inline-formula><mml:math id="M87" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula>) and
the volume of particles per cross section of the atmospheric column (<inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msub><mml:mi>V</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>)
remain unchanged. However, Indonesian smoke particles are larger and increase
more rapidly with AOD than the operational model. The differences in the
imaginary part of the refractive index show that Indonesian smoke is
substantially less absorbing (whiter) than the generic moderately absorbing
model currently employed by the algorithm, especially for very thick smoke
plumes. The generic (operational) aerosol model shows increased absorption
with increasing AOD, which may represent “brown” smoke better rather than
“white” smoke. However, we note that a widely used AERONET-derived smoke
model from data taken in South America also shows no AOD dependence on its
absorption properties (Dubovik et al., 2002). These differences, especially
those due to the differences in absorption, can introduce a retrieval bias in AOD on
the order of 1. We use this newly generated regional smoke model to
generate a research AOD product over Indonesia region during the wildfire
season.</p>
      <?pagebreak page266?><p id="d1e1421">Using the regional smoke model and the algorithm with modified masking, we
reproduce the AOD for the case study of 22 September 2015, shown in Fig. 5a.
This product is referred to as the “research AOD”. Compared with Fig. 2b,
the research AOD has greater data coverage (availability shown in green in
Fig. 5b), especially over the regions where optically thick smoke plumes
exist. At the center of the plume, the research AOD<inline-formula><mml:math id="M89" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub></mml:math></inline-formula> can be as higher
than 5, but is constrained to be 5 because of the lack of sensitivity of the
algorithm to very high AOD. Areas with no AOD retrievals within the plume are
identified as clouds. By using the new aerosol model, the retrieval values
are altered as well. When the DT AOD<inline-formula><mml:math id="M90" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub></mml:math></inline-formula> is less than 1.0, the two
products report very similar retrievals, with differences of less than 0.1
as shown in Fig. 5b. When the DT AOD<inline-formula><mml:math id="M91" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub></mml:math></inline-formula> is greater than 1.5, the
research algorithm produces smaller AOD<inline-formula><mml:math id="M92" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub></mml:math></inline-formula> values. This is due to the
use of a new aerosol model with less absorption.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p id="d1e1462"><bold>(a)</bold> Comparisons of the MODIS DT AOD at 0.55 <inline-formula><mml:math id="M93" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m
(black dots) and an intermediate AOD retrieved using the new aerosol model,
but same masking as the MODIS DT algorithm (red dots). <bold>(b)</bold> AOD at
0.55 <inline-formula><mml:math id="M94" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m retrieved by the full research algorithm, all plotted
against collocated AERONET observations at five AERONET sites August to
October 2015. Also shown are RMSE, correlation coefficient (<inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) and
number of collocations (No.) for the entire range of AODs (upper left and
right) and also for a subset of the collocations when AERONET is greater than
1 (lower right). The blue dashed lines are the error envelopes of <inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> % AOD.</p></caption>
        <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f06.png"/>

      </fig>

      <p id="d1e1516">This modified research algorithm is tuned to retrieve over optically thick
smoke plumes and performs best when these targeted features exist within the
scene. Thus, a pre-selection scheme of MODIS granules is needed to ensure the
research algorithm runs on an appropriate granule. To achieve this goal, two
parameters are considered: OMI AI for confirming the existence of absorbing
aerosols and high AOD values (AOD<inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">2.5</mml:mn></mml:mrow></mml:math></inline-formula>) from the operational DT
product to ensure that heavy smoke aerosol plumes exist within the scene.
Still, those parameters need to be used with caution. A thin layer of
absorbing aerosol above clouds can trigger very high AI values especially for
regions with optically thick clouds (Meyer et al., 2013; Yu et al., 2012;
Alfaro-Contreras et al., 2014; Torres et al., 2012). Also, erroneously high
MODIS AOD can be found over cloud edges due to inaccurate cloud screening or
cloud 3-D effects (Zhang and Reid, 2006; Shi et al., 2011). Utilization of the two parameters together
provides better detection of the ideal granules for the study. In order to
minimize “fake high aerosol loading” associated with cloud artifacts, we
require AI values to be greater than 2.5 and at least 5 pixels of the
operational MODIS DT AOD<inline-formula><mml:math id="M98" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub></mml:math></inline-formula> to be greater than 2.5. All granules are
hand-checked from August to October 2015. There are 80 granules that satisfy
our selection criteria and contain optically thick smoke plumes that are not
available in the operational DT products.</p>
</sec>
<sec id="Ch1.S5">
  <title>Validation of the research AOD for Indonesian smoke in 2015</title>
      <p id="d1e1549">The research algorithm is applied to 80 selected granules. The retrieved AODs
from the research algorithm are evaluated against AERONET direct sun AODs and
are inter-compared with AODs from the operational DT product. The comparison
is based on spatiotemporal collocations of MODIS retrievals within
0.3<inline-formula><mml:math id="M99" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> latitude and longitude of the AERONET site location and AERONET observations
within 30 min of the satellite overpass times. Figure 6 shows the scatter
plot of MODIS versus AERONET AODs for (1) the operational DT product, (2) an
intermediary retrieval that uses the same masking as the operational
algorithm but implements the new heavy smoke aerosol model, and finally,
(3) the research version of the MODIS AOD using the new aerosol model and the
modified cloud and NDVI masks (referred as the research algorithm hereafter)
along with the error statistics and error envelopes (<inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> % AOD) from the operational DT product. As shown in Fig. 6, the
distribution of MODIS-derived AOD products are generally<?pagebreak page267?> correlated with
AERONET AOD, with the DT AOD exhibiting much larger scatter at high AODs. The
mean bias in Fig. 6a shows that changing the aerosol model reduced the value
of retrieved AOD, especially when high AOD exists. This is because the newly
generated regional smoke model assumes smoke aerosols as less absorbing than
the generic model used in the operational DT retrievals does. That is also
the reason for the extra points retrieved when using the new aerosol model:
some retrievals (10 pixels) are greater than 5.0 when using the generic
aerosol model and are not reported by the operational algorithm. Applying the
new, less-absorbing smoke model brings those retrievals down into the
reportable range. In addition to bringing back previously unreported
retrievals, the retrievals from the new aerosol model (Fig. 6a red) have
lowered the root mean square error (RMSE) and show higher correlation with
AERONET data. Meanwhile the full research algorithm, which uses the new
aerosol model and less restrictive masking (Fig. 6b), nearly doubled the
number of high AOD retrievals for AOD<inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>, yet yields retrievals with
RMSE that is much less than is reported for the operational DT products.</p>
      <p id="d1e1589">We analyze the satellite–AERONET bias of the DT and research AOD as a
function of AERONET AOD, and we show the results in Fig. 7. In Fig. 7 C6 AOD is
binned every 5 pixels with 7 pixels in the last bin, and research AOD is
binned every 5 pixels with 6 pixels in the last bin. When AERONET AOD is less
than 1.5, there is a relatively small positive bias between both MODIS
products and the AERONET AOD. When AERONET AOD is greater than 1.5, the bias
in the DT AOD grows to around 1.0 while the bias in the research AOD is only
roughly half of that. The research product maintains a mean bias against
AERONET of <inline-formula><mml:math id="M102" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AOD <inline-formula><mml:math id="M103" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5 or less across the entire range of
AERONET AODs, and shows very good agreement (<inline-formula><mml:math id="M104" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AOD <inline-formula><mml:math id="M105" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 0.25) at the
very highest AODs (AOD<inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula>). We note that the standard deviation of
the bias can be large even when the mean bias is low. The regional aerosol
model that we used represents nonabsorbing white smoke emitted by intense
peat burning, which may be the dominant source of the heavy smoke here, but
not the only source. When the smoke is produced from open flames or other
processes, the optical properties of the regional model will not capture
these differences and biases are introduced. For example, the mean negative
bias in the C6 AOD at AERONET AOD<inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> is partially due to the
generic aerosol model used in the operational algorithm that is much more
absorbing than the heavy smoke generated in this event. We have used 163
AERONET inversions, independent of the MODIS overpass, to form the research
aerosol model, and then validated the resulting research product using
AERONET direct sun observations of AOD collocated with MODIS retrievals.
Figure 7 shows that for the most part this aerosol model works for the
highest loading type of smoke, but given a larger formulation database with
more AERONET inversions, an aerosol model might be developed that better
captures the variability of smoke optical properties during a heavy burning
season.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p id="d1e1651">Bias between MODIS and AERONET overland AOD at 0.55 <inline-formula><mml:math id="M108" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m as
function of AERONET AOD at 0.55 <inline-formula><mml:math id="M109" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. Blue represents the operational
DT AOD and red represents the research AOD. The dots are the mean bias within
each AERONET AOD bin and the shaded area represents the standard deviation of
the bias.</p></caption>
        <?xmltex \igopts{width=156.490157pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f07.png"/>

      </fig>

      <p id="d1e1674">The new research algorithm increases data coverage temporally and spatially.
An increase in temporal data coverage in the research product is expected and
observed for all five AERONET stations, because most of the sites are
influenced by optically thick smoke around mid-September to late September.
Palangkaraya and Pontianak AERONET sites are located in the central and west
parts of Kalimantan, where the most severe burning occurs. Thus, the AOD time
series over these two sites show the most significant differences in data
coverage between DT AOD and the research AOD. Figure 8 shows the time series
of pixel-level AERONET observations (in grey), the MODIS DT (in blue) and the
research<?pagebreak page268?> product (in red) over Palangkaraya and Pontianak sites. MODIS data
that are collocated with AERONET observations both spatially and temporally
are shown by dots, while crosses show same-day spatial collocations that are
not restricted to <inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">30</mml:mn></mml:mrow></mml:math></inline-formula> min of overpass. Unlike Fig. 6, here we plot
every individual MODIS retrieval within the 0.3<inline-formula><mml:math id="M111" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> radius circle rather
than averaging all the retrievals in the circle and only plotting the mean.
Likewise, we plot every AERONET observation, regardless of whether there is a
collocation with MODIS over pass. For this exercise only, because we note the
large sample of AERONET AOD greater than 5, we also plotted research data
that are larger than 5 using open circles and plus signs, respectively. Also
note that sun photometry reaches its limit when AOD equals 7 multiplied by
air mass (<inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:mn mathvariant="normal">7</mml:mn><mml:mo>⋅</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:math></inline-formula>). Thus, the gaps in the AERONET AOD<inline-formula><mml:math id="M113" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub></mml:math></inline-formula> time
series at Palangkaraya and Pontianak could be because the AOD exceeded this
value at this wavelength. Comparison at a longer wavelength, such as
0.675 <inline-formula><mml:math id="M114" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, might have yielded a larger sample because of the small
particle size of smoke and corresponding strong spectral dependence would
produce AODs less than the AOD limit. However, using longer AERONET
wavelengths would have required spectral extrapolation of the AOD to
0.55 <inline-formula><mml:math id="M115" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m in order to compare with the MODIS product, introducing
additional uncertainty.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p id="d1e1735">Time series of all AERONET observations of AOD at 0.55 <inline-formula><mml:math id="M116" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m
(in grey) as a function of Julian Day in 2015, and the corresponding MODIS DT
(in blue) and research (in red) AOD over the Palangkaraya and Pontianak
AERONET sites. MODIS data that are temporally and spatially collocated with
AERONET are shown by dots, data with values greater than 5 are shown by open
circles. Same-day spatial collocations that are not restricted to <inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">30</mml:mn></mml:mrow></mml:math></inline-formula> min of overpass are shown by crosses and data with values greater than 5
are shown by plus sign. All individual MODIS retrievals within 0.3<inline-formula><mml:math id="M118" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
of the AERONET site are included on the plot without averaging.</p></caption>
        <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f08.png"/>

      </fig>

      <p id="d1e1770">The time series begins 28 August (Julian Day 240) at the onset of severe
biomass burning, and proceeds to 28 October (Julian Day 300), the conclusion
of the heavy burning. MODIS data that are collocated both spatially and
temporally with AERONET show instantaneous agreement with AERONET in Fig. 8.
As MODIS and AERONET observation times begin to stray outside the 1 h
collocation window (crosses), the MODIS retrievals do not always agree as
well with AERONET observations. Overall, we see the MODIS products matching
AERONET well, both in terms of day-to-day means and also in terms of
spatiotemporal variability. The spread of MODIS points, caused by spatial
variability, agrees well with the spread of AERONET points, caused by
temporal variability. This agreement supports the use of spatiotemporal
statistics in the scatter plots of Fig. 6. The research product provides much
more data, especially when AERONET-observed AOD is greater than 2.0 and
captures the instantaneous high AOD that are observed by AERONET. Over the
Palangkaraya site, where the operational product misses most of the burning
event, the research product is able to retrieve on many days over this
period. A similar pattern can be found over the Pontianak site where the
research product provides better data coverage of events with its AOD
retrievals, following the pattern of the AERONET AOD time series well. We also
see several situations where the operational DT values are too high, as
compared with AERONET, but the research algorithm values are less so.</p>
      <p id="d1e1773">For the limited pairs of collocation data that we have, the research
algorithm is producing values of AOD that generally agree with collocated
AERONET values, on average. For AOD<inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">1.0</mml:mn></mml:mrow></mml:math></inline-formula> the error range is very
similar to that from the operational DT algorithm. For all available AOD
during this period and domain 48 % of the operational DT data points fall
within the error bounds defined for the global DT overland algorithm (<inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> % AOD; Levy et al., 2013). In comparisons, 66 % of the
AODs retrieved by the research algorithm fall within this error envelope. If
we relax this error bound to <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">17</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> % AOD, then
70 % of the research AOD values fall within this range. At the same<?pagebreak page269?> time, the
new research algorithm has doubled the number of retrievals with AOD<inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e1844">The research algorithm increased the number of retrievals and reduced the
bias against AERONET measurements. However, the method retains some sources
of uncertainty, which contribute to errors in the retrieval. One is that the
AOD at 2.1 <inline-formula><mml:math id="M124" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m can be high. In the DT algorithm we match the measured
TOA reflectance at 2.1, 0.66, and 0.47 <inline-formula><mml:math id="M125" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m with
modeled reflectance. The surface reflectance and contribution of aerosols at
2.1 <inline-formula><mml:math id="M126" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m are accounted for. This method is most accurate when the
influence of the aerosols at 2.1 <inline-formula><mml:math id="M127" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m is negligible. Hence, having a
high AOD at 2.1 <inline-formula><mml:math id="M128" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m will still influence the retrieval accuracy,
because assumptions made about aerosol optical properties influence the
partition between surface and atmosphere contributions to the TOA signal.
Although AERONET makes measurements of aerosol in visible and near-IR
wavelengths, which are used to derive the modeled TOA reflectance, it does
not provide aerosol properties at 2.1 <inline-formula><mml:math id="M129" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m and there are few or no
alternative sources. Thus, we do not yet have a constraint on the uncertainty
of derived TOA reflectance at 2.1 <inline-formula><mml:math id="M130" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, and a high aerosol loading at
this wavelength will enlarge the uncertainties.</p>
      <p id="d1e1897">Another uncertainty source is in the aerosol model parameterization when
AOD <inline-formula><mml:math id="M131" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 3. Our study shows it is important to have an AOD-dependent aerosol
optical model to reduce the bias when retrieving AOD under very high aerosol
loading. Having more measurements of aerosol optical properties at
AOD <inline-formula><mml:math id="M132" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 3 can further reduce our retrieved uncertainties. However, a
perfect AOD-dependent peat-burning smoke aerosol model is still not adequate
to represent every smoke plume. Smoke properties vary largely due to the type
of burning, and although peat burning (which tends to appear white) dominated
the 2015 Indonesia fire event, there were still brown smoke plumes seen
occasionally, which were caused by open flaming. A fixed regional aerosol
model introduces bias when a different type of burning occurs. Thus, an
instantaneous retrieval of aerosol absorption is the key to get more accurate
retrievals at very high aerosol loading, and further research in this
direction is needed.</p>
</sec>
<sec id="Ch1.S6">
  <?xmltex \opttitle{Characterization of the Indonesian 2015\hack{\break} burning season}?><title>Characterization of the Indonesian 2015<?xmltex \hack{\break}?> burning season</title>
      <p id="d1e1923">The new research algorithm provides better characterization of the Indonesian
fire season because it offers more frequent sampling of the heavy smoke
events and better accuracy. Because the research product retrieves high AOD
more often than the operational product, the MODIS-derived regional AOD
climatology will change. Figure 9 shows the histogram of MODIS AOD over the
Indonesian region from August to October 2015 on a logarithmic scale. Here we
do not constrain the upper limit of the retrieved AOD. The red is the
research AOD and the blue is the DT AOD. When AOD is small the AOD
distributions of the research product and the operational product are very
similar. Note that in the <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.1</mml:mn></mml:mrow></mml:math></inline-formula> to 0.0 bin the research AOD (red) matches
the DT AOD (blue) and that is why no red bar can be seen. However, the
research product has much more data available than the operational product
when AOD is greater than 2.0. The number of AOD retrievals in the 4.0 to 5.0
bin almost doubles for the research algorithm, as compared with the
operational product, and there are many retrievals of AOD greater than 5.0 in
the research product, but none with the operational product. Note that due to
removing the upper bound of AOD<inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5.0</mml:mn></mml:mrow></mml:math></inline-formula> we have allowed the research
algorithm to extrapolate beyond the limits of the LUT (Sect. 2.1), and the
research AOD can reach very high values. To maintain the integrity of the AOD
histogram, we included values greater than 5 in Fig. 9 and showed them using
shaded white lines. However, we do not know the variations or uncertainties
of these extremely high AOD retrievals and thus recommended using them with
caution. Again, during our validation and analyses, we capped AOD at 5.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p id="d1e1952">The histogram of MODIS AOD over the Indonesia region from August to
October 2015 in a logarithmic scale. The red is the research AOD, the blue is
the operational C6 AOD. Data that are greater than 5 from the research AOD
are shaded using white lines.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f09.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p id="d1e1963">Spatial distribution of averaged AOD from the <bold>(a)</bold> the
operational product, <bold>(b)</bold> the research product and <bold>(c)</bold> the
differences of <bold>(b)</bold> minus <bold>(a)</bold> at 0.5<inline-formula><mml:math id="M135" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> resolution
over the study domain from August to October 2015.</p></caption>
        <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/259/2019/acp-19-259-2019-f10.png"/>

      </fig>

      <p id="d1e1998">Monthly mean domain-averaged AOD statistics are shown in Table 2 for both
MODIS aerosol retrievals over land. The domain is defined as <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> to
10<inline-formula><mml:math id="M137" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and 95 to 125<inline-formula><mml:math id="M138" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E. During August when the severe
burning has not yet started, the two AOD products provide similar statistics
of AOD. Then during September and October, once the burning has become
severe, we see higher monthly mean AOD values over land with the research
algorithm than with the operational DT algorithm. The difference in the overland domain averaged AOD is about 0.2 for both months.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p id="d1e2032">Domain-averaged (<inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> to 10<inline-formula><mml:math id="M140" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and 95 to 125<inline-formula><mml:math id="M141" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E)
monthly mean MODIS-derived AOD at 0.55 <inline-formula><mml:math id="M142" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m over land for the
operational (DT) and research (Res) algorithms.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Months</oasis:entry>
         <oasis:entry colname="col2">DT land</oasis:entry>
         <oasis:entry colname="col3">Res land</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">August</oasis:entry>
         <oasis:entry colname="col2">0.41</oasis:entry>
         <oasis:entry colname="col3">0.41</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">September</oasis:entry>
         <oasis:entry colname="col2">0.99</oasis:entry>
         <oasis:entry colname="col3">1.22</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">October</oasis:entry>
         <oasis:entry colname="col2">1.26</oasis:entry>
         <oasis:entry colname="col3">1.51</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e2135">Figure 10a and b show the spatial distribution of averaged AOD from the
research product and the operational product at 0.5<inline-formula><mml:math id="M143" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> resolution over
the study domain from August to October 2015. The research product shows much
more intense smoke in the burning regions of Borneo and the island of
Sumatra than the operational DT algorithm does. However, there is almost no
change of retrieved AOD over regions where intense burning did not happen,
such as<?pagebreak page270?> northern Borneo and northern Sumatra. The differences between Fig. 10a and
b are shown in Fig. 10c. Grid boxes with AOD differences greater than 1.0 are
found over most of the areas where severe burning occurs. Such large
differences are found in 8 % of the total land grid boxes in September
and 9 % in October. At the center of the burning, differences in AOD can
be above 3.0. Even over regions that are mostly influenced by transported
smoke, such as Singapore, the research product shows AOD to be about 0.3 higher
than what operational product reports.</p>
</sec>
<sec id="Ch1.S7" sec-type="conclusions">
  <title>Summary and conclusions</title>
      <p id="d1e2153">The MODIS DT aerosol algorithm, developed for “normal” global conditions,
exhibits a problem in characterizing the aerosol during an anomalously
severe wildfire season in Indonesia. The DT algorithm misses the heaviest
smoke scenes and returns inaccurate values of AOD when it does make a
retrieval in heavy smoke. We found that problems of missing or inaccurate
reporting of AOD over this event existed not only in the MODIS DT aerosol
algorithm but also in other aerosol satellite products as well.</p>
      <p id="d1e2156">To “save” the optically thick smoke data that the traditional DT product
misses, we tune the operational MODIS DT aerosol algorithm pixel selection
routines and develop a regional aerosol model from local AERONET inversion
products. One important change is the cloud mask. Based on the particle size
differences in smoke and clouds, the MODIS cloud optical properties algorithm
will fail when attempting to retrieve cloud microphysical properties from
heavy aerosol. So, even if a pre-retrieval screening process cannot separate
smoke from clouds, a post-retrieval screening process, based on the failure
of the cloud algorithm, will make the distinction. We make use of the cloud
product diagnostic flags to bring back heavy smoke pixels at the center of
the smoke plumes. A second important change is the regional smoke model
generated from AERONET inversion products that better represents aerosol
properties in this region. The generated smoke model is a function of AOD for
particle size distribution, but not for absorption properties. The AERONET
inversion products are analyzed from a limited data set that includes few
retrievals for AOD<inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">2.0</mml:mn></mml:mrow></mml:math></inline-formula>. Thus, extrapolation of aerosol particle
properties to the highest AOD situations introduces uncertainty, especially
for the absorption properties which exhibit no AOD dependencies for
AOD<inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">2.0</mml:mn></mml:mrow></mml:math></inline-formula>, but may for AOD<inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">2.0</mml:mn></mml:mrow></mml:math></inline-formula>. We do note that the
standard deviation of the bias between AERONET and the research AOD at high
AOD can be large even when the mean bias is low, possibly suggesting multiple
types of smoke with different absorbing properties in the data set. We look
forward to future data sets from AERONET which may provide additional
constraints on absorption and other optical properties during high aerosol
loadings.</p>
      <p id="d1e2201">This research algorithm is designed to retrieve very optically thick smoke
and is applied only on MODIS granules that contain the targeted feature.
Thus, a pre-selection procedure is used to select suitable granules for the
study. The pre-selection criteria are based on OMI AI, which indicates the
existence of absorbing aerosols, and the operational DT AOD to filter out
false high AOD due to cloud adjacent effects and situations with aerosol
above clouds. The research algorithm is applied to all 80 selected granules
over the study region within the study time period. Validation of the
research product is done using AERONET version 3 level 2 AOD. The comparisons
show that the research product captures more AOD when AOD<inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1.0</mml:mn></mml:mrow></mml:math></inline-formula> than
does the operational DT algorithm. The research AOD agrees better with
AERONET values, resulting in smaller RMSEs and higher correlation statistics.
Most of the improvement is found for AOD <inline-formula><mml:math id="M148" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1. On average, 66.3 % of
the collocated research AOD agree with the current error bounds determined
from global<?pagebreak page271?> analysis of the DT retrievals, which is much better than
48.4 % from the operational AOD in this region. Thus, the research AOD
over extreme high smoke loading conditions has nearly the same accuracy as the DT
product validated over the entire globe. If we relax the error envelopes'
upper bound from <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">17</mml:mn></mml:mrow></mml:math></inline-formula> % AOD then 70 % of
research AOD fall within the bounds. The research retrieval has more than
double the number of AOD <inline-formula><mml:math id="M151" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1, and with those additional retrievals
included, the bulk error statistics still show a large improvement.</p>
      <p id="d1e2256">The ability to now retrieve these optically thick smoke plumes alters our
understanding of the aerosol system in this region. Statistical analyses
illustrate the severe intensity of the monthly and seasonal mean AOD in the
specific areas of the heavy smoke, and also show the temporal frequency that
was missed with the operational DT algorithm. Using the new algorithm, the
domain-averaged overland AOD<inline-formula><mml:math id="M152" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub></mml:math></inline-formula> increases by 0.22 in September and
October of 2015, but over regions where severe burning occurs, the new
algorithm increases AOD<inline-formula><mml:math id="M153" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0.55</mml:mn></mml:msub></mml:math></inline-formula> <italic>by as much as 3.0</italic> for each
0.5<inline-formula><mml:math id="M154" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> grid box, over the previous operational algorithm values.</p>
      <p id="d1e2290">This amount of missing AOD can skew the perception of the severity of the
event by researchers and decision-makers who rely on the global DT aerosol
for characterization of aerosol systems. The missing AOD can also
significantly affect estimates of observationally based regional aerosol
forcing and improperly influence assimilation systems that rely on the
MODIS DT product. Estimating the perturbation of extra AOD on regional
radiative balance, despite being beyond the scope of this work, is an obvious task
for future study. The ability to bring back the missing retrievals and
assure their accuracy with a regionally appropriate aerosol model is an
important step in the development of the DT algorithm. However, there are
still many steps before this promising research can become an operational
application. First, we do not know whether the changes made and validated
for the 2015 season will hold in subsequent seasons. Second, we do not know
whether the tuning of the algorithm for the Indonesian region will hold for
other situations of heavy smoke from wildfires. The Indonesian smoke proved
to be relatively nonabsorbing, which might be similar to smoke from peat
burnings in other places such as that from Alaskan fires in summer of 2004
and 2005 (Eck et al., 2009), but may be inappropriate for more absorbing
smoke in other places and situations. Third, there is also a philosophical
question of how fragmented a global aerosol retrieval should become. If
there are too many special situations, the product loses its global
uniformity. However, the DT algorithm team has already begun the move
towards specially tuned situations as they have implemented a special
handling of urban surfaces (Gupta et al., 2016). A specific set of
assumptions triggered by heavy smoke is a likely candidate for the next DT
specialty retrieval, but first we must prove its global applicability.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e2297">All MODIS products are available for download from the NASA
Level-1 and Atmosphere Archive &amp; Distribution System (LAADS) Distributed
Active Archive Center (DAAC) at
<uri>https://ladsweb.modaps.eosdis.nasa.gov/missions-and-measurements/#atmosphere-chart</uri>
(NASA, 2018) The OMMYDAGEO product can be accessed at
<uri>https://disc.gsfc.nasa.gov/datacollection/OMMYDAGEO_003.html</uri> (Joiner,
2017). Please contact the corresponding author for the research data on 2015
Indonesia fire events.</p>
  </notes><notes notes-type="authorcontribution">

      <p id="d1e2309">YRS, RCL, and LAR designed the
study. YRS carried out majority of the research and performed the data
analysis. TFE and IS provided the initial AERONET V3 inversion data and
helped interpolate the data set. BF provided the
OMMYDAGEO product. SM helped modify the MODIS Dark Target algorithm.
YRS, RCL, LAR, and JZ wrote the article with contributions from all coauthors.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e2315">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e2321">We acknowledge two funding sources: The NASA Terra and Aqua algorithms and
existing data products (NNH13ZDA001N-TERAQEA) and NASA Senior Review for
Terra and Aqua (2017), and Algorithm Maintenance for their financial support.
We also thank the AERONET staff for the data collection, calibration and
processing and specially principal investigators and co-investigators for
maintaining the Jambi, Kuching, Palangkaraya, Pontianak, and Singapore sites.
Special thanks go to two reviewers for their constructive comments and warm
encouragement. <?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: Kostas
Tsigaridis<?xmltex \hack{\newline}?> Reviewed by: two anonymous referees</p></ack><ref-list>
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    <!--<article-title-html>Characterizing the 2015 Indonesia fire event using modified MODIS aerosol retrievals</article-title-html>
<abstract-html><p>The Indonesian fire and smoke event of 2015 was an extreme episode that
affected public health and caused severe economic and environmental damage.
The MODIS Dark Target (DT) aerosol algorithm, developed for global
applications, significantly underestimated regional aerosol optical depth
(AOD) during this episode. The larger-than-global-averaged uncertainties in
the DT product over this event were due to both an overly zealous set of masks
that mistook heavy smoke plumes for clouds and/or inland water, and also an
aerosol model developed for generic global aerosol conditions. Using Aerosol
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cloud optical properties algorithm, and relaxed thresholds on both inland
water tests and upper limits of the AOD retrieval, we created a research
algorithm and applied it to 80 appropriate MODIS granules during the event.
Collocating and comparing with AERONET AOD shows that the research algorithm
doubles the number of MODIS retrievals greater than 1.0, while also
significantly improving agreement with AERONET. The final results show that
the operational DT algorithm had missed approximately 0.22 of the regional
mean AOD, but as much as AOD&thinsp; = &thinsp;3.0 for individual 0.5° grid
boxes. This amount of missing AOD can skew the perception of the severity of
the event, affect estimates of regional aerosol forcing, and alter aerosol
modeling and forecasting that assimilate MODIS aerosol data products. These
results will influence the future development of the global DT aerosol
algorithm.</p></abstract-html>
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