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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-19-13067-2019</article-id><title-group><article-title>Lightning <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> simulation over the contiguous US and<?xmltex \hack{\break}?> its effects on satellite <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrievals</article-title><alt-title>Lightning <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></alt-title>
      </title-group><?xmltex \runningtitle{Lightning {$\chem{NO_{\mathit{x}}}$}}?><?xmltex \runningauthor{Q. Zhu et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Zhu</surname><given-names>Qindan</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2173-4014</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Laughner</surname><given-names>Joshua L.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8599-4555</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Cohen</surname><given-names>Ronald C.</given-names></name>
          <email>rccohen@berkeley.edu</email>
        <ext-link>https://orcid.org/0000-0001-6617-7691</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Department of Earth and Planetary Sciences, University of California, Berkeley, Berkeley, CA 94720, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Chemistry, University of California, Berkeley, Berkeley, CA 94720, USA</institution>
        </aff>
        <aff id="aff3"><label>a</label><institution>now at: Department of Environmental Science and Engineering, California Institute of Technology,<?xmltex \hack{\break}?> Pasadena, CA 91125, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Ronald C. Cohen (rccohen@berkeley.edu)</corresp></author-notes><pub-date><day>23</day><month>October</month><year>2019</year></pub-date>
      
      <volume>19</volume>
      <issue>20</issue>
      <fpage>13067</fpage><lpage>13078</lpage>
      <history>
        <date date-type="received"><day>6</day><month>March</month><year>2019</year></date>
           <date date-type="rev-request"><day>9</day><month>April</month><year>2019</year></date>
           <date date-type="rev-recd"><day>22</day><month>August</month><year>2019</year></date>
           <date date-type="accepted"><day>21</day><month>September</month><year>2019</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2019 </copyright-statement>
        <copyright-year>2019</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e147">Lightning is an important <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> source representing <inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> % of the global source of odd N and a much larger percentage in the upper troposphere. The poor understanding of spatial and temporal patterns of lightning contributes to a large uncertainty in understanding upper tropospheric chemistry. We implement a lightning parameterization using the product of convective available potential energy (CAPE) and convective precipitation rate (PR) coupled with the Kain–Fritsch convective scheme (KF/CAPE-PR) into the Weather Research and Forecasting-Chemistry (WRF-Chem) model.
Compared to the cloud-top height (CTH) lightning parameterization combined with the Grell 3-D convective scheme (G3/CTH), we show that the switch of convective scheme improves the correlation of lightning flash density in the southeastern US from 0.30 to 0.67 when comparing against the Earth Networks Total Lightning Network; the switch of lightning parameterization contributes to the improvement of the correlation from 0.48 to 0.62 elsewhere in the US.
The simulated <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles using the KF/CAPE-PR parameterization exhibit better agreement with aircraft observations in the middle and upper troposphere. Using a lightning <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate of 500 mol NO flash<inline-formula><mml:math id="M8" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, the a priori <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile generated by the simulation with the KF/CAPE-PR parameterization reduces the air mass factor for <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrievals by 16 % on average in the southeastern US in the late spring and early summer compared to simulations using the G3/CTH parameterization. This causes an average change in <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical column density 4 times higher than the average uncertainty.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <?pagebreak page13068?><p id="d1e248">Nitrogen oxides (<inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>≡</mml:mo><mml:mi mathvariant="normal">NO</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) are key species in atmospheric chemistry, affecting the oxidative capacity in the troposphere by regulating the ozone and hydroxyl radical concentrations <xref ref-type="bibr" rid="bib1.bibx11" id="paren.1"/>.  Anthropogenic sources (mainly fossil fuel combustion) are the largest contributor to the <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> budget on a global scale. Natural sources of <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are also non-negligible <xref ref-type="bibr" rid="bib1.bibx15" id="paren.2"/>. While anthropogenic emissions of <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are intensively studied, natural sources are less understood <xref ref-type="bibr" rid="bib1.bibx14 bib1.bibx26 bib1.bibx38" id="paren.3"><named-content content-type="pre">e.g.,</named-content></xref>. Lightning contributes <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> % of  the <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> budget on a global scale and represents over 80 % of <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the upper troposphere (UT) <xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx40" id="paren.4"/>. Over the US, anthropogenic <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions have been decreasing rapidly <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx34" id="paren.5"/>, making lightning an increasingly important source of <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and an increasingly large fraction of the source of column <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Ozone (<inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) in the UT has a long lifetime and leads to a more pronounced radiative effect than ozone elsewhere in the troposphere. Varying lightning <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions (<inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) by a factor of 4 (123 to 492 mol <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> flash<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) yields up to 60 % enhancement of UT <inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and increases the mean net radiative flux by a factor of 3 <xref ref-type="bibr" rid="bib1.bibx33" id="paren.6"/>. This range in the lightning <inline-formula><mml:math id="M28" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate is similar to the current uncertainty of estimated lightning emission rates. Further, incorrect representation of <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in a priori profiles for satellite <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrievals leads to biases in the retrieved <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns. This is exacerbated by the greater sensitivity of ultraviolet–visible (UV–Vis) <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrievals to the UT <xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx53" id="paren.7"><named-content content-type="pre">e.g.,</named-content></xref>.</p>
      <p id="d1e519">When lightning occurs, <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> is emitted as a result of high temperatures and <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> forms through rapid photochemistry. Studies report that the estimated <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate ranges widely from 16 to 700 mol <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula>  flash<inline-formula><mml:math id="M37" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx21 bib1.bibx37 bib1.bibx48 bib1.bibx22 bib1.bibx4 bib1.bibx7 bib1.bibx23 bib1.bibx41 bib1.bibx39 bib1.bibx33 bib1.bibx42 bib1.bibx43 bib1.bibx28 bib1.bibx40" id="paren.8"/>.</p>
      <p id="d1e576">Two categories of methods, one emphasizing the near field of lightning <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and the other the far field, have previously been applied to estimate <inline-formula><mml:math id="M39" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. In near-field approaches the total <inline-formula><mml:math id="M40" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from direct observation close to the lightning flashes is divided by the number of flashes from a lightning observation network to yield the <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> per flash <xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx22 bib1.bibx43" id="paren.9"><named-content content-type="pre">e.g.,</named-content></xref>. Near-field estimates of <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> per flash have also been made through the use of cloud-resolved models with <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> constrained by observed flashes and aircraft data from storm anvils <xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx41 bib1.bibx12" id="paren.10"><named-content content-type="pre">e.g.,</named-content></xref>. In contrast, the far-field approach uses downwind observations to constrain a regional or global chemical transport model. The emission rate of lightning <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is varied in the model (either ad hoc or through formal assimilation methods) until the modeled <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> agrees with the measurements of total <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at the far-field location <xref ref-type="bibr" rid="bib1.bibx21 bib1.bibx37 bib1.bibx23 bib1.bibx39 bib1.bibx33 bib1.bibx28 bib1.bibx40" id="paren.11"/>. In general, far-field approaches yield estimates of <inline-formula><mml:math id="M47" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at the upper end of the reported range, while estimates from near-field studies are typically at the lower end of the range. <xref ref-type="bibr" rid="bib1.bibx40" id="text.12"/> showed that a large part of this discrepancy is because prior near-field studies assume a long <inline-formula><mml:math id="M48" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> lifetime in the UT, while active peroxy radical chemistry in the near field leads to a short <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> lifetime (<inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>). Without accounting for this chemical loss, the near-field and far-field estimates are biased low compared to each other. However, this effect cannot completely reconcile the discrepancy between <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> reported from near- and far- field studies.</p>
      <p id="d1e759">In chemical transport models, <inline-formula><mml:math id="M53" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production is modeled by assuming that a fixed number of moles of <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> is produced per lightning flash, typically 250 or 500 mol NO flash<inline-formula><mml:math id="M55" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx1 bib1.bibx41" id="paren.13"/>. This presents an additional challenge to far-field approaches to constrain <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, as errors in the simulation of the lightning flash rate will propagate into errors in the <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production per flash. However, explicitly simulating the cloud-scale processes that produce lightning is generally too computationally expensive to be applied in a regional or global model as it requires spatial resolution at the scale of cloud processes. Instead, the convection is parameterized using simplified convection schemes. Lightning is then parameterized by a suite of convection parameters. The most prevalent lightning parameterization relates lightning to the cloud-top height (CTH) <xref ref-type="bibr" rid="bib1.bibx44 bib1.bibx45" id="paren.14"/>. Price and Rind found a consistent proportionality between cloud-to-ground (CG) lightning flashes and the fifth power of cloud-top height. Other meteorological variables, including upward cloud mass flux (UMF), convective precipitation rate (CPR), convective available potential energy (CAPE) and cloud ice flux (ICEFLUX), have been suggested as alternative lightning proxies for CG flashes or in some cases total flashes <xref ref-type="bibr" rid="bib1.bibx2 bib1.bibx10 bib1.bibx54 bib1.bibx46 bib1.bibx17" id="paren.15"/>. When CG flashes are predicted, the total lightning rate, including CG and intra-cloud (IC) flashes, is derived by defining a regionally dependent CG : IC ratio <xref ref-type="bibr" rid="bib1.bibx5" id="paren.16"/>.</p>
      <p id="d1e829">Several previous studies have evaluated the performance of these lightning parameterizations in regional and global models. <xref ref-type="bibr" rid="bib1.bibx52" id="text.17"/> concluded that none of them accurately reproduce the observed lightning observations even though some are intercomparable. <xref ref-type="bibr" rid="bib1.bibx54" id="text.18"/> showed that a model using the Grell–Devenyi ensemble convective parameterization and the CTH lightning parameterization simulates an erroneous flash count frequency distribution over time, while the integrated lightning flash count is consistent with the observation. <xref ref-type="bibr" rid="bib1.bibx35" id="text.19"/> tested the single-variable parameterizations (CTH, CAPE, UMF, CPR) and the paired parameterizations based on the power-law relationship (CAPE-CTH, CAPE-UMF, UMF-CTH), each of which was coupled with the Kain–Fritsch convective scheme, and demonstrated that the two-variable parameterization using CAPE-CTH improves upon the previous single-variable parameterizations; it captures the temporal change in flash rates, but the simulated spatial distribution is still not satisfactory.</p>
      <p id="d1e841">In this study, we implemented the CAPE-PR lightning parameterization <xref ref-type="bibr" rid="bib1.bibx46" id="paren.20"/> into WRF-Chem and assess the performance in reproducing lightning flash density. Our motivation is to produce a better representation of a proxy-based lightning parameterization in the regional chemistry transport model. We also evaluate the effect of modeled lightning <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> on both the a priori profiles used in satellite <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrievals and the retrievals themselves.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methods: models and observations</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>WRF-Chem</title>
      <p id="d1e884">This study applies  the Weather Research and  Forecast Model coupled with Chemistry (WRF-Chem) version 3.5.1 to the time periods May to June 2012 and August to September 2013. The model domain covers North America from 20 to 50<inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N with <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:mn mathvariant="normal">12</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">12</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> horizontal resolution and 29 vertical layers. The North American Regional Reanalysis<?pagebreak page13069?> (NARR) provides initial and boundary conditions. Temperature, wind direction, wind speed and water vapor are nudged every 3 <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> towards the NARR product. Chemistry initial and boundary conditions are provided by the Model for Ozone and Related Chemistry Tracers (MOZART; <uri>https://www.acom.ucar.edu/wrf-chem/mozart.shtml</uri>, last access: 21 October 2019). Anthropogenic emissions are driven by the National Emissions Inventory 2011 (NEI 11), with a scaling factor to match the total emissions to 2012 emission from the Environmental Protection Agency <xref ref-type="bibr" rid="bib1.bibx16" id="paren.21"/>. Biogenic emissions are driven by the Model of Emissions of Gases and Aerosol from Nature (MEGAN; <xref ref-type="bibr" rid="bib1.bibx20" id="altparen.22"/>). We use a customized version of the Regional Atmospheric Chemistry Mechanism version 2 (RACM2); the details are described by <xref ref-type="bibr" rid="bib1.bibx55" id="text.23"/>.</p>
      <p id="d1e937">The default lightning parameterization used in WRF-Chem is based on cloud-top height (CTH). The parameterized lightning flash rates are proportional to a power of cloud-top height with linear scaling varied by region:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M63" display="block"><mml:mrow><mml:mi>f</mml:mi><mml:mo>=</mml:mo><mml:mfenced open="{" close=""><mml:mrow><mml:mtable class="array" columnalign="left left"><mml:mtr><mml:mtd><mml:mrow><mml:mn mathvariant="normal">3.44</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi>H</mml:mi><mml:mn mathvariant="normal">4.9</mml:mn></mml:msup></mml:mrow></mml:mtd><mml:mtd><mml:mtext>continental</mml:mtext></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mn mathvariant="normal">6.20</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi>H</mml:mi><mml:mn mathvariant="normal">1.73</mml:mn></mml:msup></mml:mrow></mml:mtd><mml:mtd><mml:mtext>marine</mml:mtext></mml:mtd></mml:mtr></mml:mtable><mml:mo>,</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M64" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> is the CG flash rate in each grid and <inline-formula><mml:math id="M65" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> is the colocated cloud-top height in units of kilometers.</p>
      <p id="d1e1015">We also implement an alternative lightning parameterization wherein lightning flash rates are defined to be proportional to the product of the convective available potential energy (CAPE) and precipitation rate (PR).
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M66" display="block"><mml:mrow><mml:mi>f</mml:mi><mml:mo>=</mml:mo><mml:mfenced open="{" close=""><mml:mtable class="array" columnalign="left left"><mml:mtr><mml:mtd><mml:mrow><mml:mn mathvariant="normal">0.9</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup><mml:mo>×</mml:mo><mml:mi>E</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="normal">PR</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mtext>southeastern CONUS</mml:mtext></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mn mathvariant="normal">1.8</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup><mml:mo>×</mml:mo><mml:mi>E</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="normal">PR</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mtext>elsewhere CONUS</mml:mtext></mml:mtd></mml:mtr></mml:mtable></mml:mfenced></mml:mrow></mml:math></disp-formula>
          Here, <inline-formula><mml:math id="M67" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> is the CG flash rate in each grid cell, <inline-formula><mml:math id="M68" display="inline"><mml:mi>E</mml:mi></mml:math></inline-formula> the convective available potential energy and PR the convective precipitation rate. Southeastern CONUS in this context is the region between 94–76<inline-formula><mml:math id="M69" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W and 25–37<inline-formula><mml:math id="M70" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N. This parameterization was proposed by <xref ref-type="bibr" rid="bib1.bibx46" id="text.24"/>. <xref ref-type="bibr" rid="bib1.bibx46" id="text.25"/> used a year-round observation of lightning and meteorological parameters and found a good correlation between observed lightning flash densities and observed CAPE times PR over CONUS. CAPE-PR was further examined in <xref ref-type="bibr" rid="bib1.bibx50" id="text.26"/>, who computed the proxy in a numerical forecast model and found a fairly good agreement between the spatial pattern of the daily CG flash rate and the forecast proxy over 2003–2016. To our knowledge the CAPE-PR parameterization has not previously been coupled with chemistry. Note that we compute these two meteorological variables every 72 s in our model setup and produce lightning flash rates in a much shorter time step compared to <xref ref-type="bibr" rid="bib1.bibx46" id="text.27"/> and <xref ref-type="bibr" rid="bib1.bibx50" id="text.28"/>. We also apply a regional scaling factor of 0.5 to the southeastern US (see Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/>).</p>
      <p id="d1e1132">We analyze WRF-Chem outputs from three model runs. The first run, referred to as G3/CTH, is consistent with <xref ref-type="bibr" rid="bib1.bibx28" id="text.29"/>; it selects the Grell 3-D ensemble cumulus convective scheme <xref ref-type="bibr" rid="bib1.bibx18 bib1.bibx19" id="paren.30"/> and the CTH lightning parameterization. The Grell 3-D convective scheme readily computes the neutral buoyancy level that serves as the optimal proxy for cloud-top height <xref ref-type="bibr" rid="bib1.bibx54" id="paren.31"/>. The G3/CTH run is the only option for the coupled convective–lighting parameterization used in WRF-Chem at a non-cloud-resolving resolution (12 km). In addition, we run WRF-Chem with the CTH lightning parameterization coupled with the Kain–Fritsch cumulus convective scheme <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx24" id="paren.32"/> (KF/CTH) to test the effect of switching convective schemes. In the KF/CTH parameterization, the cloud-top height is the level at which the updraft vertical velocity equals zero. Another run, referred to as KF/CAPE-PR, selects the Kain–Fritsch cumulus convective scheme and the CAPE-PR lightning parameterization described above. Compared to the Grell 3-D convective scheme, the Kain–Fritsch uses the depletion of at least 90 % of the CAPE as the closure assumption and calculates CAPE on the basis of entraining parcels instead of undiluted parcels, which also improves the calculation of precipitation rate <xref ref-type="bibr" rid="bib1.bibx24" id="paren.33"/>. The lightning <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate is defined to be 500 mol <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> flash<inline-formula><mml:math id="M73" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The CG : IC ratio and the <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> post-convection vertical distribution are the same as used by <xref ref-type="bibr" rid="bib1.bibx28" id="text.34"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>ENTLN lightning observation network</title>
      <p id="d1e1204">To assess the performance of the lightning parameterizations we compare to lightning flashes from the Earth Networks Total Lightning Network (ENTLN). ENTLN employs over 100 sensors across the United States and observes both CG and IC pulses (<uri>https://www.earthnetworks.com/why-us/networks/lightning/</uri>, last access: 21 October 2019). All lightning pulses within 10 <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula> and 700 <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">ms</mml:mi></mml:mrow></mml:math></inline-formula> of each other are grouped as a single flash. The IC and CG flashes are summed over the grid spacing defined in WRF-Chem.</p>
      <p id="d1e1226">Compared to the National Lightning Detection Network (NLDN), ENTLN is selected for high detection efficiencies of both CG and IC flashes. The average detection efficiency for total flashes observed by ENTLN was 88 % over CONUS relative to the space-based Tropical Rainfall Measurement Mission (TRMM) Lightning Imaging Sensor (LIS) (<xref ref-type="bibr" rid="bib1.bibx27" id="altparen.35"/>; Jeff Lapierre, private communication, 2018). As shown in Fig. S2 in the Supplement, we matched the ENTLN data to LIS flashes both in time and space after the correction of LIS data based on its detection efficiency <xref ref-type="bibr" rid="bib1.bibx9" id="paren.36"/> during 13 May–23 June 2012. It shows a median correlation (<inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.51</mml:mn></mml:mrow></mml:math></inline-formula>) with a slope of 1.0, indicating that the ENTLN data during the study time period are in agreement with the LIS observation. We use the ENTLN for analysis as reported and consider the detection efficiency of ENTLN as a source of uncertainty when comparing the modeled lightning flashes.</p><?xmltex \hack{\newpage}?>
</sec>
<?pagebreak page13070?><sec id="Ch1.S2.SS3">
  <label>2.3</label><title>In situ aircraft measurements</title>
      <p id="d1e1259">We compare our simulations to observations from aircraft campaigns that focus on deep convection. The Deep Convective Clouds and Chemistry (DC3) campaign <xref ref-type="bibr" rid="bib1.bibx3" id="paren.37"/> took place during May and June of 2012 over Colorado, Oklahoma, Texas and Alabama. Studies of Emissions and Atmospheric Composition, Clouds, and Climate Coupling by Regional Surveys (SEAC4RS) <xref ref-type="bibr" rid="bib1.bibx51" id="paren.38"/> took place during August and September of 2013; most of the flight tracks occurred over the southeastern US. Both aircraft campaigns flew into and out of storms and sampled deep convection. The combination of these two aircraft campaigns covers the regions with the most active lightning in the domain.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Satellite measurements</title>
      <p id="d1e1276">The Ozone Monitoring Instrument (OMI) is an ultraviolet–visible (UV–Vis) nadir solar backscatter spectrometer launched in July 2004 onboard the Aura satellite. It detects backscattered radiance in the range of 270–500 <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:math></inline-formula> and the spectra are used to derive column <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at a spatial resolution of <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:mn mathvariant="normal">13</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">24</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> at nadir <xref ref-type="bibr" rid="bib1.bibx32" id="paren.39"/>. The OMI overpass time is <inline-formula><mml:math id="M81" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 13:30 local time.</p>
      <p id="d1e1328">We use the Berkeley High Resolution (BEHR) v3.0B OMI <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrieval <xref ref-type="bibr" rid="bib1.bibx30" id="paren.40"/>. The air mass factor (AMF) is calculated based on the high-spatial-resolution a priori input data including surface reflectance, surface elevation and <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical profiles. In this study we apply an experimental branch of the BEHR product that differs from v3.0B  in several ways. First, instead of calculation based on temperature profiles from WRF-Chem, the tropopause pressure is switched to GEOS-5 monthly tropopause pressure that is consistent with the NASA Standard Product (SP2) <xref ref-type="bibr" rid="bib1.bibx36" id="paren.41"/>. Analysis shows that the algorithm used in BEHR v3.0B to calculate the WRF-derived tropopause pressure is very much dependent on the vertical spacing predefined in the WRF-Chem setup, which causes biases when the vertical layers are at a coarse resolution. Second, the <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical profiles are outputs using the modified lightning parameterization described in Eq. (<xref ref-type="disp-formula" rid="Ch1.E2"/>).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Comparison with observed lightning flash density</title>
      <p id="d1e1389">The lightning parameterizations are compared against observations from ENTLN in Fig. <xref ref-type="fig" rid="Ch1.F1"/>. Each of the datasets is averaged from 13 May to 23 June 2012, covering the DC3 field campaign. The ENTLN data are summed to the <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:mn mathvariant="normal">12</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">12</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:mrow></mml:math></inline-formula> WRF grid. The G3/CTH parameterization fails to reproduce the spatial pattern of flashes observed by ENTLN over CONUS. Compared to the G3/CTH, the KF/CTH parameterization improves the spatial correlation in the southeast region of the US and yields a lower number of lightning flashes. It indicates that the KF convective scheme produces smaller cumulus cloud-top heights than the G3 scheme by including entrainment and detrainment processes during the convection. The result is consistent with <xref ref-type="bibr" rid="bib1.bibx56" id="text.42"/>. The KF/CAPE-PR parameterization better captures the spatial distribution of flash densities in both the southeast region and elsewhere in CONUS. However, the KF/CAPE-PR parameterization still fails to capture the gradients in flash occurrence within smaller regions. For instance, ENTLN shows that more lightning occurs along the east coast than the west coast in Florida; however, WRF-Chem generates a lightning flash density of the same magnitude over both areas. Nevertheless, the KF/CAPE-PR substantially improves the model performance in reproducing lightning spatial patterns.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e1419">Observed flash densities from the ENTLN dataset <bold>(a)</bold> and WRF-Chem using three coupled convective–lightning parameterizations, the G3/CTH parameterization <bold>(b)</bold>, the KF/CTH parameterization <bold>(c)</bold> and the KF/CAPE-PR parameterization <bold>(d)</bold>. The correlation of total flash density per day between WRF-Chem outputs and ENTLN for the southeastern US (denoted by the red box in panels <bold>a–d</bold>) is shown in panel <bold>(e)</bold> and the correlation for elsewhere in CONUS is shown in panel <bold>(f)</bold>. The model using G3/CTH is in red, KF/CTH is in green and KF/CAPE-PR is in blue. Dashed lines are corresponding fits. For slope and <inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, see Table <xref ref-type="table" rid="Ch1.T1"/>.</p></caption>
          <?xmltex \igopts{width=441.017717pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/13067/2019/acp-19-13067-2019-f01.png"/>

        </fig>

      <p id="d1e1463">To evaluate the agreement quantitatively, we regress the WRF daily regional average flash densities against those measured by ENTLN. The daily regional averaged flash density is calculated by summing the total flash rates and dividing them by the corresponding regional size. The regressions are shown in Fig. <xref ref-type="fig" rid="Ch1.F1"/>e and f; the correlation statistics are shown in Table <xref ref-type="table" rid="Ch1.T1"/>. The regressions by forcing and intercept equal to zero are also tested, and the results are unaffected.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e1474">Correlation statistics between observed and modeled (G3/CTH, KF/CTH, KF/CAPE-PR) flash density per day averaged by region.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.99}[.99]?><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2"/>

         <oasis:entry colname="col3">G3/CTH</oasis:entry>

         <oasis:entry colname="col4">KF/CTH</oasis:entry>

         <oasis:entry colname="col5">KF/CAPE-PR</oasis:entry>

       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>

         <oasis:entry rowsep="1" colname="col1" morerows="1">Southeastern</oasis:entry>

         <oasis:entry colname="col2">Slope</oasis:entry>

         <oasis:entry colname="col3">2.08</oasis:entry>

         <oasis:entry colname="col4">0.94</oasis:entry>

         <oasis:entry colname="col5">0.96</oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col2"><inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col3">0.30</oasis:entry>

         <oasis:entry colname="col4">0.67</oasis:entry>

         <oasis:entry colname="col5">0.72</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1" morerows="1">Elsewhere</oasis:entry>

         <oasis:entry colname="col2">Slope</oasis:entry>

         <oasis:entry colname="col3">0.98</oasis:entry>

         <oasis:entry colname="col4">0.54</oasis:entry>

         <oasis:entry colname="col5">1.19</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2"><inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col3">0.27</oasis:entry>

         <oasis:entry colname="col4">0.48</oasis:entry>

         <oasis:entry colname="col5">0.62</oasis:entry>

       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

      <p id="d1e1599">Both models using the KF/CTH and KF/CAPE-PR parameterizations improve the correlation between modeled and observed lightning flash densities over the US domain. In the southeastern US, changing from the G3 to KF convective scheme substantially increases the <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> from 0.30 to 0.67 and reduces the slope from 2.08 to 0.94. Switching from the CTH to CAPE-PR lightning parameterization only contributes a slight increment on the correlation. While the slopes are close to unity for both KF/CTH and KF/CAPE-PR, we note that the improved scaling of the slope in KF/CAPE-PR is mainly caused by the scaling factor of 0.5 applied to the southeast region. In this simulation, a constant linear coefficient for CAPE-PR is not adequate to represent the observed lightning over CONUS, in contrast to the finding of <xref ref-type="bibr" rid="bib1.bibx46" id="text.43"/>.
Elsewhere in CONUS, changes in both the convective scheme and lightning parameterization yield a better representation of lightning flash densities compared to the observation.
The <inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> for KF/CAPE-PR improves significantly to 0.62 compared to both G3/CTH and KF/CTH. The slope for KF/CAPE-PR is 1.19, which is within the uncertainty of the<?pagebreak page13071?> detection efficiency of ENTLN. In general the KF/CAPE-PR lightning parameterization captures the day-to-day variation in flash densities better than the G3/CTH and KF/CTH parameterizations, as shown by the improved <inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> values.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Comparison with observed vertical profiles</title>
      <p id="d1e1646">We compare the WRF <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile to the average vertical profile of <inline-formula><mml:math id="M93" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measured during DC3 and SEAC4RS in Fig. <xref ref-type="fig" rid="Ch1.F2"/>. Data points are matched in time and space by finding the WRF-Chem output nearest in time and closest in space to a given observation. We only compare <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles from WRF-Chem using KF/CAPE-PR against the one using G3/CTH.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e1686">Comparison of WRF-Chem and aircraft <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles from the <bold>(a, b)</bold> DC3 and <bold>(c, d)</bold> SEAC4RS campaigns. Vertical <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles are shown in panels <bold>(a)</bold> and <bold>(c)</bold>; the solid line is the mean of all profiles and the bars are 1 standard deviation for each binned level. The corresponding absolute difference compared to observations is shown in panels <bold>(b)</bold> and <bold>(d)</bold>. Aircraft measurements are shown in black, with WRF-Chem using the G3/CTH parameterization in red and WRF-Chem using the KF/CAPE-PR parameterization in blue.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/13067/2019/acp-19-13067-2019-f02.png"/>

        </fig>

      <p id="d1e1736">The effect of lightning <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> on the profiles is indistinguishable close to the surface. In the upper and middle troposphere, both model simulations yield similar <inline-formula><mml:math id="M98" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical profiles compared to the measurements from DC3. WRF-Chem using KF/CAPE-PR performs slightly better between 200 and 400 <inline-formula><mml:math id="M99" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">hPa</mml:mi></mml:mrow></mml:math></inline-formula>, but the negative bias still exists. <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> from<?pagebreak page13072?> both the observations and the models is very small in the middle troposphere between 400 and 700 <inline-formula><mml:math id="M101" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">hPa</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e1789"><xref ref-type="bibr" rid="bib1.bibx31" id="text.44"/> previously identified a high bias of WRF-Chem UT <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> versus SEAC4RS in the southeast US when using the G3/CTH parameterization. The model using the KF/CAPE-PR parameterization reduces this high bias of <inline-formula><mml:math id="M103" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the middle and upper troposphere. The KF/CAPE-PR parameterization slightly overestimates <inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the middle troposphere (400–530 <inline-formula><mml:math id="M105" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">hPa</mml:mi></mml:mrow></mml:math></inline-formula>) and underestimates it in the upper troposphere (<inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">280</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">hPa</mml:mi></mml:mrow></mml:math></inline-formula>), which is consistent with the comparison to observations from the DC3 campaign.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><?xmltex \opttitle{Impact on BEHR {$\protect\chem{NO_{2}}$} retrievals}?><title>Impact on BEHR <inline-formula><mml:math id="M108" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrievals</title>
      <p id="d1e1874">In space-based retrievals of <inline-formula><mml:math id="M109" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, the AMF is required to convert the slant column density (SCD) obtained by fitting the observed radiances into a vertical column density (VCD). The AMF depends on scattering weights (which describe the sensitivity of the measurement to different levels of the atmosphere) and an <inline-formula><mml:math id="M110" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile that is either measured or simulated by a chemical transport model, such as WRF-Chem. Over a dark surface, the scattering weights in the UT are up to 10 times greater than near the surface due to the greater probability that a photon that reaches the lower troposphere will be absorbed by the surface. Therefore, errors in the UT <inline-formula><mml:math id="M111" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile can have large effects on the AMF <xref ref-type="bibr" rid="bib1.bibx28" id="paren.45"><named-content content-type="pre">e.g.,</named-content></xref>. Here, we investigate how the <inline-formula><mml:math id="M112" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles simulated by the KF/CAPE-PR parameterization affect the BEHR <inline-formula><mml:math id="M113" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrievals.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e1940">Relative change in BEHR <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD over the southeastern US switching the source of a priori <inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles from WRF-Chem outputs using G3/CTH to one using the KF/CAPE-PR lightning parameterization. Panel <bold>(a)</bold> shows the mean spatial distribution of the changes from 1 August to 23 September 2013 and panel <bold>(b)</bold> shows the temporal variation over urban and rural areas. Only observations with a cloud fraction less than 20 % are included. Medium to large cities are marked by stars in panel <bold>(a)</bold>: Atlanta, GA; Huntsville, AL; Birmingham, AL; Tallahassee, FL; Orlando, FL; and Baton Rouge, LA.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/13067/2019/acp-19-13067-2019-f03.png"/>

        </fig>

      <p id="d1e1980">Figure <xref ref-type="fig" rid="Ch1.F3"/>a shows the relative change in tropospheric VCD averaged between 1 August and 23 September 2013 induced by changing the a priori profiles from the model using G3/CTH to the one using the KF/CAPE-PR lightning parameterization. The relative enhancement of VCD is 19 % on average over the southeast US, but it varies significantly.</p>
      <p id="d1e1986">We follow the same algorithm used in <xref ref-type="bibr" rid="bib1.bibx28" id="text.46"/> to determine if the result is significant. The<?pagebreak page13073?> overall uncertainty due to AMF calculation for BEHR v3.0B is smaller than 30 % during the study period (Sect. 6 in the Supplement from <xref ref-type="bibr" rid="bib1.bibx31" id="altparen.47"/>). Over 90 % of the uncertainty is attributed to the a prior <inline-formula><mml:math id="M116" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles, the tropopause and cloud pressures. As each grid in Fig. <xref ref-type="fig" rid="Ch1.F3"/>a  is the average of <inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:mn mathvariant="normal">45</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:math></inline-formula> pixels, the reduced uncertainty is less than 4.5 %. The overall change in VCD is 4 times larger than the reduced uncertainty. The switch of lightning parameterization leads to changes in VCD exceeding the averaged uncertainty in <inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">94</mml:mn></mml:mrow></mml:math></inline-formula> % of pixels in the southeast region of the US.</p>
      <p id="d1e2031">The spatial pattern in Fig. <xref ref-type="fig" rid="Ch1.F3"/>a suggests that the magnitude of the improved representation of lightning is quite different in urban and rural areas. The cities indicated by stars and their vicinity regions are associated with a substantial increase in <inline-formula><mml:math id="M119" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD. To quantify this, we define urban and rural areas by the difference in column <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> calculated from WRF-Chem without <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Urban ares are the top 5 % of columns with an average VCD of <inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> mole cm<inline-formula><mml:math id="M123" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The selected rural areas have the same size as urban areas and the average VCD is <inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.72</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> mole cm<inline-formula><mml:math id="M125" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.
Figure <xref ref-type="fig" rid="Ch1.F3"/>b shows the relative change in VCD over urban and rural areas as a function of time. The increase in VCD due to the change in profiles is more pronounced over urban areas, with an averaged relative change of <inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">38</mml:mn></mml:mrow></mml:math></inline-formula> % compared to the average change of <inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">24</mml:mn></mml:mrow></mml:math></inline-formula> % in rural areas.  Changes in urban VCDs span <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> % to 135 %. In contrast, using the <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles produced by the KF/CAPE-PR simulation leads to a maximum increase of only 58.3 % in VCD over rural areas.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e2171">Differences for BEHR AMFs and tropospheric VCDs when using the a priori <inline-formula><mml:math id="M130" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles from models with CTH vs. CAPE-PR parameterizations in the AMF calculation. For definitions of “urban” and “rural”, see the text.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2"/>

         <oasis:entry colname="col3">AMF G3/CTH</oasis:entry>

         <oasis:entry colname="col4">AMF KF/CAPE-PR</oasis:entry>

         <oasis:entry colname="col5">%<inline-formula><mml:math id="M131" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>AMF</oasis:entry>

         <oasis:entry colname="col6">VCD G3/CTH</oasis:entry>

         <oasis:entry colname="col7">VCD KF/CAPE-PR</oasis:entry>

         <oasis:entry colname="col8">%<inline-formula><mml:math id="M132" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>VCD</oasis:entry>

       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>

         <oasis:entry rowsep="1" colname="col1" morerows="1">10 Sep</oasis:entry>

         <oasis:entry colname="col2">Urban</oasis:entry>

         <oasis:entry colname="col3">1.64</oasis:entry>

         <oasis:entry colname="col4">0.72</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">56.0</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col6"><inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.19</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col7"><inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:mn mathvariant="normal">5.16</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col8">134.9</oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col2">Rural</oasis:entry>

         <oasis:entry colname="col3">1.96</oasis:entry>

         <oasis:entry colname="col4">1.33</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">32.0</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col6"><inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.11</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col7"><inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.63</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col8">44.9</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1" morerows="1">24 Aug</oasis:entry>

         <oasis:entry colname="col2">Urban</oasis:entry>

         <oasis:entry colname="col3">1.07</oasis:entry>

         <oasis:entry colname="col4">0.95</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">11.3</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col6"><inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.56</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col7"><inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.64</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col8">3.1</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">Rural</oasis:entry>

         <oasis:entry colname="col3">1.23</oasis:entry>

         <oasis:entry colname="col4">1.25</oasis:entry>

         <oasis:entry colname="col5">1.60</oasis:entry>

         <oasis:entry colname="col6"><inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.91</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col7"><inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.82</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4.6</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e2495">Table <xref ref-type="table" rid="Ch1.T2"/> presents the AMF and VCD obtained using a priori profiles with the G3/CTH or KF/CAPE-PR lightning parameterization as well as the relative changes on 10 September and 24 August 2013. The corresponding a priori <inline-formula><mml:math id="M145" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles and scattering weights over urban and rural areas are shown in Fig. S3. The G3/CTH parameterization has substantially more lightning than observed and thus places a large fraction of <inline-formula><mml:math id="M146" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the upper troposphere, whereas the KF/CAPE-PR has less lightning and is more consistent with observations. The resulting profiles of modeled <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are more dominated by boundary-layer <inline-formula><mml:math id="M148" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and less sensitive to lightning.
10 September is an example of one day when the change in <inline-formula><mml:math id="M149" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles has a very large impact on the <inline-formula><mml:math id="M150" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCDs. WRF-Chem using the G3/CTH parameterization places a large amount of <inline-formula><mml:math id="M151" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> between 200 and 600 <inline-formula><mml:math id="M152" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">hPa</mml:mi></mml:mrow></mml:math></inline-formula>, with the maximum value comparable to near-surface <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> over urban areas. The calculated AMF is predominantly determined by lightning <inline-formula><mml:math id="M154" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> due to the combination of higher scattering weight and larger <inline-formula><mml:math id="M155" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the middle and upper troposphere. The change in AMF is <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">56.0</mml:mn></mml:mrow></mml:math></inline-formula> % over urban areas and <inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">32.0</mml:mn></mml:mrow></mml:math></inline-formula> % over rural areas; the corresponding VCD increases by 134.9 % and 44.9 %, respectively. In contrast, 24 August is an example in which the lightning parameterization has very little effect. While the positive bias in <inline-formula><mml:math id="M158" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> aloft is also observed by using the G3/CTH parameterization, the amount of <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the middle and upper troposphere is smaller than on 10 September. It leads to lower sensitivity of AMF to the erroneous <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> caused by the lightning parameterization. With a smaller relative change in AMF, the relative change in VCD is 3.1 % over urban areas and <inline-formula><mml:math id="M161" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4.6</mml:mn></mml:mrow></mml:math></inline-formula> % over rural areas.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e2686">Difference in <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD  between BEHR retrievals and WRF-Chem (WRF-Chem <inline-formula><mml:math id="M163" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> BEHR). Panel <bold>(a)</bold> excludes <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in model simulation, and panel <bold>(b)</bold> adds <inline-formula><mml:math id="M165" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions with a production rate of  500 mol NO flash<inline-formula><mml:math id="M166" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.  Panel <bold>(c)</bold> includes the same <inline-formula><mml:math id="M167" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions as panel <bold>(b)</bold> but uses <inline-formula><mml:math id="M168" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles scaled upward by 60 % at pressure lower than 400 <inline-formula><mml:math id="M169" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">hPa</mml:mi></mml:mrow></mml:math></inline-formula>. The average time covers 13 May to 23 June 2012. Pixels with a cloud fraction larger than 0.2 are filtered out in the analysis.</p></caption>
          <?xmltex \igopts{width=469.470472pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/13067/2019/acp-19-13067-2019-f04.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Discussion</title>
      <?pagebreak page13074?><p id="d1e2800">Here, we apply the improved KF/CAPE-PR simulation to the problem of constraining <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production over CONUS. To do so, we vary the lightning <inline-formula><mml:math id="M171" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate prescribed in WRF-Chem to produce the simulated map of <inline-formula><mml:math id="M172" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD and compare against OMI <inline-formula><mml:math id="M173" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> retrievals using a priori profiles from model simulations with the same <inline-formula><mml:math id="M174" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate. In our model–satellite comparisons the averaging kernel is applied to remove the representative errors introduced by a priori knowledge of <inline-formula><mml:math id="M175" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical profiles <xref ref-type="bibr" rid="bib1.bibx6" id="paren.48"/>. Figure <xref ref-type="fig" rid="Ch1.F4"/> shows the difference between satellite-retrieved <inline-formula><mml:math id="M176" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD and model-simulated <inline-formula><mml:math id="M177" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD without lightning <inline-formula><mml:math id="M178" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (a) and with a lightning <inline-formula><mml:math id="M179" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate of 500 mol NO flash<inline-formula><mml:math id="M180" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (b) averaged between 13 May and 23 June 2012. Figure S4 shows difference plots with varied lightning <inline-formula><mml:math id="M181" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rates (400 and 665 mol NO flash<inline-formula><mml:math id="M182" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). The corresponding root mean square errors (RMSEs) are included in Table S1. The <inline-formula><mml:math id="M183" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate of 500 mol NO flash<inline-formula><mml:math id="M184" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> yields the lowest RMSE of <inline-formula><mml:math id="M185" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.41</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> mole cm<inline-formula><mml:math id="M186" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> between modeled and observed <inline-formula><mml:math id="M187" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD over CONUS. This is at the high end of previous estimates of the lightning <inline-formula><mml:math id="M188" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate (16–700 mol NO flash<inline-formula><mml:math id="M189" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>).</p>
      <p id="d1e3040">The RMSE for urban areas (top 5 % of <inline-formula><mml:math id="M190" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD simulated by WRF-Chem without <inline-formula><mml:math id="M191" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) remains at a high value (<inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.9</mml:mn></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> mole cm<inline-formula><mml:math id="M194" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) when switching the <inline-formula><mml:math id="M195" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate. It indicates that the bias in the modeled VCD over urban areas is more likely due to surface <inline-formula><mml:math id="M196" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. The RMSE for nonurban areas shows pronounced change with a varied <inline-formula><mml:math id="M197" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate. Excluding urban areas lowers the RMSE to <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.37</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> mole cm<inline-formula><mml:math id="M199" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the <inline-formula><mml:math id="M200" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate of 500 mol NO flash<inline-formula><mml:math id="M201" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.
The RMSEs are significant considering the uncertainty for retrievals. During the average time period, <inline-formula><mml:math id="M202" display="inline"><mml:mrow><mml:mn mathvariant="normal">32</mml:mn><mml:mo>±</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> pixels contribute to each value in the plots. While the global mean uncertainty for tropospheric <inline-formula><mml:math id="M203" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD retrievals is <inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> mole cm<inline-formula><mml:math id="M205" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx8" id="paren.49"/>, the reduced uncertainty in our analysis is <inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> mole cm<inline-formula><mml:math id="M207" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The calculated RMSEs are twice the uncertainty.</p>
      <?pagebreak page13075?><p id="d1e3270">However, we note that this lightning <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> estimate is systematically biased high due to the negative bias in the <inline-formula><mml:math id="M209" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> ratio in the middle and upper troposphere. The satellite-observed <inline-formula><mml:math id="M210" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column serves as a proxy for total <inline-formula><mml:math id="M211" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emitted by lightning. The rapid interconversion between <inline-formula><mml:math id="M212" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M213" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reaches the photochemical steady state in a short time (<inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">120</mml:mn></mml:mrow></mml:math></inline-formula> s). Consequently, if the model kinetics result in an incorrect <inline-formula><mml:math id="M215" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M216" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> photochemical steady-state ratio, this error will propagate into the <inline-formula><mml:math id="M217" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production estimate. Comparisons against aircraft measurements show that the <inline-formula><mml:math id="M218" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> ratio in the WRF-Chem simulations is around 40 % smaller than observations in the upper troposphere (Fig. S5). Given that the simulated <inline-formula><mml:math id="M219" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> is too small, the model will simulate smaller <inline-formula><mml:math id="M220" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCDs per unit of <inline-formula><mml:math id="M221" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emitted, requiring a greater <inline-formula><mml:math id="M222" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production efficiency to match satellite <inline-formula><mml:math id="M223" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD observations. A comparison of modeled <inline-formula><mml:math id="M224" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns, recalculated with <inline-formula><mml:math id="M225" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles scaled up by 60 % (the ratio of observed and modeled <inline-formula><mml:math id="M226" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>) at pressure levels at which <inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">400</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M228" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">hPa</mml:mi></mml:mrow></mml:math></inline-formula>, and observations is shown in Fig. <xref ref-type="fig" rid="Ch1.F4"/>c. This suggests that 500 mol NO flash<inline-formula><mml:math id="M229" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is greater than the actual <inline-formula><mml:math id="M230" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate when the bias caused by the <inline-formula><mml:math id="M231" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> ratio is accounted for.</p>
      <p id="d1e3610">Several recent studies also report an underestimate in modeled <inline-formula><mml:math id="M232" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> ratios in the SE US <xref ref-type="bibr" rid="bib1.bibx53 bib1.bibx49" id="paren.50"/>; both feature observations from the SEAC4RS field campaign to validate model simulations. <xref ref-type="bibr" rid="bib1.bibx49" id="text.51"/> suggest that the underestimate is either caused by an unknown labile <inline-formula><mml:math id="M233" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> reservoir species or an error in the reaction rate constant for the <inline-formula><mml:math id="M234" display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reaction and <inline-formula><mml:math id="M235" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> photolysis reaction. In contrast, <xref ref-type="bibr" rid="bib1.bibx40" id="text.52"/> utilize measurements from the DC3 field campaign and demonstrate a positive bias in the modeled <inline-formula><mml:math id="M236" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> ratio compared against observations. Understanding the difference in <inline-formula><mml:math id="M237" display="inline"><mml:mrow class="chem"><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>]</mml:mo><mml:mo>/</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> between models and observations requires additional study but is crucial to reducing the uncertainty in <inline-formula><mml:math id="M238" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">LNO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> estimates.</p>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d1e3758">We implement an alternative lightning parameterization based on convective available potential energy and precipitation rate into WRF-Chem and couple it with the Kain–Fritsch convective scheme. We first validate it by comparing against lightning observations and find that the model reproduces the day-to-day variation of lightning flashes in the southeastern US after the switch of convective scheme and the switch of lightning parameterization contribute to the improvement of the lightning representation elsewhere in the US.
We also compare the simulated <inline-formula><mml:math id="M239" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles against aircraft measurements and find that the simulated <inline-formula><mml:math id="M240" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> using KF/CAPE-PR is more consistent with observations in the middle and upper troposphere.</p>
      <p id="d1e3783">The improved lightning <inline-formula><mml:math id="M241" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> simulation has a significant impact on AMFs and VCD of <inline-formula><mml:math id="M242" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Over the southeastern US the AMF is reduced by 16 % on average, leading to a 19 % increase in the <inline-formula><mml:math id="M243" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD. The effects on AMF and on VCD are very locally dependent. The VCD increase over urban areas is more pronounced and can be over 100 %. This study indicates that the erroneous representation of lightning <inline-formula><mml:math id="M244" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in a priori profiles is an important source of bias for satellite retrievals.
The model–satellite <inline-formula><mml:math id="M245" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column comparison suggests that 500 mol NO flash<inline-formula><mml:math id="M246" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is the upper bound for estimates of the lightning <inline-formula><mml:math id="M247" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> production rate.</p>
</sec>

      
      </body>
    <back><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e3869">The experimental branch of the BEHR v3.0B product used in this study is hosted by UC Dash <xref ref-type="bibr" rid="bib1.bibx58 bib1.bibx59" id="paren.53"/> as well as at <uri>https://behr.cchem.berkeley.edu/download-behr-data/</uri> (last access: 21 October 2019). The BEHR algorithm is available at <uri>https://github.com/CohenBerkeleyLab/BEHR-core/</uri> (last access: 21 October 2019; <xref ref-type="bibr" rid="bib1.bibx29" id="altparen.54"/>). The revised WRF-Chem code is available at <uri>https://github.com/CohenBerkeleyLab/WRF-Chem-R2SMH/tree/lightning</uri> (last access: 21 October 2019; <xref ref-type="bibr" rid="bib1.bibx57" id="altparen.55"/>).</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e3891">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/acp-19-13067-2019-supplement" xlink:title="pdf">https://doi.org/10.5194/acp-19-13067-2019-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e3900">RCC directed the research and QZ, JLL and RCC designed this study; JLL and QZ developed BEHR products; QZ performed the analysis and prepared the paper with contributions from JLL and RCC. All authors have reviewed and edited the paper.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e3906">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e3912">We acknowledge use of the Savio computational cluster resource provided by the Berkeley Research Computing program at UC Berkeley that is supported by the UC Berkeley Chancellor, Vice Chancellor for Research, and Chief Information Officer. We thank the Earth Networks Company for providing the Earth Networks Total Lightning Network (ENTLN) datasets. We appreciate use of the WRF-Chem preprocessor tool (mozbc) provided by the Atmospheric Chemistry Observations and Modeling Lab (ACOM) of NCAR and use of MOZART-4 global model output available at <uri>https://www.acom.ucar.edu/wrf-chem/mozart.shtml</uri> (last access: 21 October 2019).</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e3920">This research has been supported by NASA (grant nos. NNX14AK89H, NNX15AE37G, and 80NSSC18K0624) and the Smithsonian Astrophysical Observatory (grant no. SV3-83019).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e3926">This paper was edited by Andreas Richter and reviewed by Yuhang Wang and one anonymous referee.</p>
  </notes><ref-list>
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    <!--<article-title-html>Lightning NO<sub>2</sub> simulation over the contiguous US and its effects on satellite NO<sub>2</sub> retrievals</article-title-html>
<abstract-html><p>Lightning is an important NO<sub><i>x</i></sub> source representing  ∼ 10&thinsp;% of the global source of odd N and a much larger percentage in the upper troposphere. The poor understanding of spatial and temporal patterns of lightning contributes to a large uncertainty in understanding upper tropospheric chemistry. We implement a lightning parameterization using the product of convective available potential energy (CAPE) and convective precipitation rate (PR) coupled with the Kain–Fritsch convective scheme (KF/CAPE-PR) into the Weather Research and Forecasting-Chemistry (WRF-Chem) model.
Compared to the cloud-top height (CTH) lightning parameterization combined with the Grell 3-D convective scheme (G3/CTH), we show that the switch of convective scheme improves the correlation of lightning flash density in the southeastern US from 0.30 to 0.67 when comparing against the Earth Networks Total Lightning Network; the switch of lightning parameterization contributes to the improvement of the correlation from 0.48 to 0.62 elsewhere in the US.
The simulated NO<sub>2</sub> profiles using the KF/CAPE-PR parameterization exhibit better agreement with aircraft observations in the middle and upper troposphere. Using a lightning NO<sub><i>x</i></sub> production rate of 500&thinsp;mol&thinsp;NO flash<sup>−1</sup>, the a priori NO<sub>2</sub> profile generated by the simulation with the KF/CAPE-PR parameterization reduces the air mass factor for NO<sub>2</sub> retrievals by 16&thinsp;% on average in the southeastern US in the late spring and early summer compared to simulations using the G3/CTH parameterization. This causes an average change in NO<sub>2</sub> vertical column density 4 times higher than the average uncertainty.</p></abstract-html>
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