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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-19-11821-2019</article-id><title-group><article-title>European <inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in WRF-Chem derived from OMI: impacts on summertime surface ozone</article-title><alt-title>OMI-derived <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions: impacts on surface <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></alt-title>
      </title-group><?xmltex \runningtitle{OMI-derived {$\chem{NO_{\mathit{x}}}$} emissions: impacts on surface {$\chem{O_{{3}}}$}}?><?xmltex \runningauthor{A. J. Visser et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Visser</surname><given-names>Auke J.</given-names></name>
          <email>auke.visser@wur.nl</email>
        <ext-link>https://orcid.org/0000-0001-9595-6037</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Boersma</surname><given-names>K. Folkert</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-4591-7635</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Ganzeveld</surname><given-names>Laurens N.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff3">
          <name><surname>Krol</surname><given-names>Maarten C.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3506-2477</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Wageningen University, Meteorology and Air Quality Section, Wageningen, the Netherlands</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Royal Netherlands Meteorological Institute, R&amp;D Satellite Observations, de Bilt, the Netherlands</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Utrecht University, Institute for Marine and Atmospheric Research Utrecht, Utrecht, the Netherlands</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Auke J. Visser (auke.visser@wur.nl)</corresp></author-notes><pub-date><day>24</day><month>September</month><year>2019</year></pub-date>
      
      <volume>19</volume>
      <issue>18</issue>
      <fpage>11821</fpage><lpage>11841</lpage>
      <history>
        <date date-type="received"><day>27</day><month>March</month><year>2019</year></date>
           <date date-type="rev-request"><day>29</day><month>April</month><year>2019</year></date>
           <date date-type="rev-recd"><day>27</day><month>August</month><year>2019</year></date>
           <date date-type="accepted"><day>28</day><month>August</month><year>2019</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2019 </copyright-statement>
        <copyright-year>2019</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e153">Ozone (<inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) is a secondary air pollutant that negatively affects human and ecosystem health. Ozone simulations with regional air quality models suffer from unexplained biases over Europe, and uncertainties in the emissions of ozone precursor group nitrogen oxides (<inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow><mml:mo>=</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula>) contribute to these biases. The goal of this study is to use <inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column observations from the Ozone Monitoring Instrument (OMI) satellite sensor to infer top-down <inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in the regional Weather Research and Forecasting model with coupled chemistry (WRF-Chem) and to evaluate the impact on simulated surface <inline-formula><mml:math id="M8" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with in situ observations. We first perform a simulation for July 2015 over Europe and evaluate its performance against in situ observations from the AirBase network. The spatial distribution of mean ozone concentrations is reproduced satisfactorily. However, the simulated maximum daily 8 h ozone concentration (MDA8 <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) is underestimated (mean bias error  of <inline-formula><mml:math id="M10" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.2 <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M12" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), and its spread is too low. We subsequently derive satellite-constrained surface <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions using a mass balance approach based on the relative difference between OMI and WRF-Chem <inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns. The method accounts for feedbacks through OH, <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>'s dominant daytime oxidant. Our optimized European <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions amount to 0.50 Tg N (for July 2015), which is 0.18 Tg N higher than the bottom-up emissions (which lacked agricultural soil <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions). Much of the increases occur across Europe, in regions where agricultural soil <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions dominate. Our best estimate of soil <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in July 2015 is 0.1 Tg N, much higher than the bottom-up 0.02 Tg N natural soil <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions from the Model of Emissions of Gases and Aerosols from Nature (MEGAN). A simulation with satellite-updated <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions reduces the systematic bias between WRF-Chem and OMI <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (slope <inline-formula><mml:math id="M23" display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.98</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.84</mml:mn></mml:mrow></mml:math></inline-formula>) and reduces the low bias against independent surface <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measurements by 1.1 <inline-formula><mml:math id="M26" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M27" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">56</mml:mn></mml:mrow></mml:math></inline-formula> %). Following these <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission changes, daytime ozone is strongly affected, since <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission changes particularly affect daytime ozone formation. Monthly averaged simulated daytime ozone increases by 6.0 <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M32" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and increases of <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> are seen in regions with large emission increases. With respect to the initial simulation, MDA8 <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> has an improved spatial distribution, expressed by an increase in <inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> from 0.40 to 0.53, and a decrease of the mean bias by 7.4 <inline-formula><mml:math id="M38" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M39" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (48 %). Overall, our results highlight the dependence of surface ozone on its precursor <inline-formula><mml:math id="M40" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and demonstrate that simulations of surface ozone benefit from constraining surface <inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions by satellite <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column observations.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <?pagebreak page11822?><p id="d1e601">Ozone (<inline-formula><mml:math id="M43" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) is an air pollutant that affects human and ecosystem health <xref ref-type="bibr" rid="bib1.bibx53 bib1.bibx2" id="paren.1"/>. It also affects radiative forcing directly as a greenhouse gas <xref ref-type="bibr" rid="bib1.bibx41" id="paren.2"/> and indirectly by impacting ecosystem carbon uptake via deposition <xref ref-type="bibr" rid="bib1.bibx80" id="paren.3"/>. Despite decreases in ozone concentrations in Europe starting from 2000 <xref ref-type="bibr" rid="bib1.bibx17" id="paren.4"/>, peak ozone concentrations still exceed the World Health Organization (WHO) air quality guideline of 100 <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M45" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and the European long-term objective of 120 <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M47" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx27" id="paren.5"/>. For example, 87 % of European air quality stations did not meet this long-term objective <xref ref-type="bibr" rid="bib1.bibx25" id="paren.6"/> in 2015, and vegetation exposure thresholds were exceeded in large parts of the continent during this year, particularly in southern and central Europe <xref ref-type="bibr" rid="bib1.bibx76" id="paren.7"/>.</p>
      <p id="d1e678">The formation of ozone in the lower troposphere is a photochemical process that depends non-linearly on concentrations of its precursor species nitrogen oxides (<inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow><mml:mo>=</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow><mml:mo>+</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mrow></mml:math></inline-formula>) and volatile organic compounds (VOCs) <xref ref-type="bibr" rid="bib1.bibx79" id="paren.8"><named-content content-type="pre">e.g.,</named-content></xref>. In <inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-limited conditions, ozone production increases with <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions and is less sensitive to VOC emissions. However, ozone production under <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-saturated conditions increases with VOC emissions but decreases with increasing <inline-formula><mml:math id="M52" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions. European <inline-formula><mml:math id="M53" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions are dominated by the anthropogenic contribution from fossil fuel combustion for transportation, electricity generation and industry. In summer, there are additional contributions from soils and lightning, which together comprise 40 % of the total European <inline-formula><mml:math id="M54" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission budget <xref ref-type="bibr" rid="bib1.bibx42" id="paren.9"/>. Soil <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in turn have an anthropogenic component, since nitrogen-containing fertilizers are partly re-emitted to the atmosphere as <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx84" id="paren.10"/>.</p>
      <p id="d1e807">Anthropogenic emissions in Europe have decreased due to air pollution abatement measures and the economic crisis that started in 2008 <xref ref-type="bibr" rid="bib1.bibx16" id="paren.11"/>. Bottom-up anthropogenic emission inventories suggest a continued reduction of <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in more recent years. This is consistent with the ongoing development of European air quality conditions towards the <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-limited regime <xref ref-type="bibr" rid="bib1.bibx44" id="paren.12"/>, which is projected to continue in the future <xref ref-type="bibr" rid="bib1.bibx7" id="paren.13"/>. Downward anthropogenic emission trends have also been suggested as an important driver of the decreasing trend in peak ozone concentrations in Europe <xref ref-type="bibr" rid="bib1.bibx29" id="paren.14"/>.</p>
      <p id="d1e845">Regional air quality (AQ) models are important tools for studying and forecasting ozone pollution. These models simulate processes relevant for ozone pollution at a resolution that can better capture observed spatial gradients compared to coarser global models. Regional AQ models can therefore be applied to simulate polluted conditions in or surrounding urban areas or for air quality impact assessments. Coupled (or “online”) meteorology–chemistry models resolve meteorology, transport, chemical transformation and removal of pollutants at the same spatial and temporal resolution. The coupled treatment of meteorology and chemistry is mandatory, because ozone concentrations depend on feedbacks between meteorological and chemical processes: (1) <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> sources such as chemical formation depend on radiation, temperature and water vapor <xref ref-type="bibr" rid="bib1.bibx72 bib1.bibx19" id="paren.15"/>, and (2) <inline-formula><mml:math id="M60" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> sinks, such as dry deposition, also largely depend on meteorological drivers <xref ref-type="bibr" rid="bib1.bibx18 bib1.bibx45" id="paren.16"/>. However, coupled regional air quality models are subject to several sources of uncertainties. These uncertainties are related to the limited knowledge on ozone precursor emissions <xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx70" id="paren.17"/>, the representation of boundary conditions <xref ref-type="bibr" rid="bib1.bibx32" id="paren.18"/>, tropospheric chemistry in the chemical mechanism <xref ref-type="bibr" rid="bib1.bibx47" id="paren.19"/> and the land surface and its feedbacks with tropospheric chemistry <xref ref-type="bibr" rid="bib1.bibx5" id="paren.20"/>.</p>
      <p id="d1e890">Many regional AQ models have been applied to simulate <inline-formula><mml:math id="M61" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in European summers, for research and forecasting purposes. Models tend to underestimate summertime <inline-formula><mml:math id="M63" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> compared to rural background in situ observations <xref ref-type="bibr" rid="bib1.bibx87 bib1.bibx60" id="paren.21"/>. Comparison against satellite <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column observations also revealed underestimations at regional scales <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx1" id="paren.22"/>. Another study found both positive as well as negative biases, which were attributed to the coarse resolution of the emission inventories <xref ref-type="bibr" rid="bib1.bibx69" id="paren.23"/>. AQ models satisfactorily reproduce the spatial distribution in summer <inline-formula><mml:math id="M65" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. However, mean <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> can be under- or overestimated depending on the model and chemical mechanism <xref ref-type="bibr" rid="bib1.bibx87 bib1.bibx60" id="paren.24"/>. In addition, many models consistently underestimate peak ozone values that typically occur in the afternoon <xref ref-type="bibr" rid="bib1.bibx88 bib1.bibx81 bib1.bibx61 bib1.bibx39" id="paren.25"/>. This is problematic for air pollution impact assessments, since the peak ozone values are important for determining the detrimental effects on human health and ecosystems.</p>
      <p id="d1e975">The sensitivity of <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to its precursor <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, which is particularly pronounced in summer <xref ref-type="bibr" rid="bib1.bibx44" id="paren.26"><named-content content-type="pre">e.g.,</named-content></xref>, suggests that there is good potential to improve <inline-formula><mml:math id="M69" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> simulations by constraining simulated <inline-formula><mml:math id="M70" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> with observations. The past 20 years have seen the development of methods to estimate <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions with satellite-based <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns in a mass balance approach, where biases in the model-simulated and satellite-observed <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns are used to update <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions. The technique has been applied in global models <xref ref-type="bibr" rid="bib1.bibx62 bib1.bibx49 bib1.bibx93" id="paren.27"/> and more recently also in regional models <xref ref-type="bibr" rid="bib1.bibx31" id="paren.28"><named-content content-type="pre">e.g.,</named-content></xref>. Applications of the technique include emission trend analysis <xref ref-type="bibr" rid="bib1.bibx51" id="paren.29"><named-content content-type="pre">e.g.,</named-content></xref> and source-specific constraints on <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions <xref ref-type="bibr" rid="bib1.bibx31 bib1.bibx93 bib1.bibx94 bib1.bibx92" id="paren.30"><named-content content-type="pre">e.g.,</named-content></xref>. Changes in <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions impact tropospheric chemistry, and therefore changes in <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are expected. This was shown by <xref ref-type="bibr" rid="bib1.bibx31" id="text.31"/>, who found local changes in surface <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mole fractions up to 10 ppb over India after satellite-based <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission scaling. <xref ref-type="bibr" rid="bib1.bibx92" id="text.32"/> reported ozone increases up to 8 ppb at 800 hPa (<inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula> km) in China after scaling local <inline-formula><mml:math id="M81" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions with Ozone Monitoring Instrument (OMI) observations and found that simulated free-tropospheric ozone between 3 and 9 km was in better agreement with tropospheric <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns observed by the Tropospheric Emission Sounder (TES). However, ozone changes at the surface after constraining <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions with satellite observations have thus far not been evaluated with in situ data to our knowledge.</p>
      <p id="d1e1197">Considering the importance of <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for simulations of ozone and the previously reported ozone changes after applying satellite-based <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, we here investigate<?pagebreak page11823?> the potential improvement in simulated surface ozone concentrations over Europe due to the application of satellite observations of <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to adjust <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions. To this end, we use the  Weather Research and Forecasting model with coupled chemistry (WRF-Chem)  <xref ref-type="bibr" rid="bib1.bibx33" id="paren.33"/> to simulate surface ozone in Europe in July 2015, at the approximate peak of the ozone season. We first perform a model evaluation with AirBase in situ <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations <xref ref-type="bibr" rid="bib1.bibx26" id="paren.34"/> and OMI <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column measurements from the recently released Quality Assurance for Essential Climate Variables (QA4ECV) dataset <xref ref-type="bibr" rid="bib1.bibx13" id="paren.35"/>. We subsequently derive a new, OMI-based (“top-down”) <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission inventory and evaluate its effects on WRF-Chem simulations of surface <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M93" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with the independent AirBase observations.</p>
      <p id="d1e1321">The structure of the paper is as follows. We describe the model setup and observations in Sect. 2. Section 3 presents the method to calculate OMI-derived <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions. In Sect. 4, we evaluate a WRF-Chem setup with bottom-up emissions in situ and column observations, and in Sect. 5 we describe the derived modified surface <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions. We evaluate the impacts on surface <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with independent in situ observations in Sect. 6. We conclude with a discussion (Sect. 7) and summarize our conclusions in Sect. 8.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Model and data description</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>WRF-Chem</title>
      <p id="d1e1383">We perform simulations with the coupled meteorology–chemistry model WRF-Chem, version 3.7.1 <xref ref-type="bibr" rid="bib1.bibx33" id="paren.36"/>. The model domain consists of 170 by 170 cells at <inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:mn mathvariant="normal">20</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M99" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> horizontal resolution covering Europe, centered at 51.98<inline-formula><mml:math id="M100" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and 5.66<inline-formula><mml:math id="M101" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E. Vertically, the domain extends from the Earth's surface up to 50 hPa and consists of 27 layers with 13 layers in the lowermost 1500 m. Chemistry simulations of <inline-formula><mml:math id="M102" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and its precursor groups (<inline-formula><mml:math id="M103" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and VOCs) are performed with the Carbon Bond Mechanism Z (CBM-Z) gas-phase chemical mechanism <xref ref-type="bibr" rid="bib1.bibx99" id="paren.37"/>. Simulations of atmospheric chemistry with this mechanism compare well with the European multi-model mean for summer <inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in a gas-phase mechanism comparison study <xref ref-type="bibr" rid="bib1.bibx47" id="paren.38"/>. A complete list of parameterization options adopted in our WRF-Chem setup can be found in Table S1 of the Supplement. Our simulations were performed with a time stepping of 180 s for a period of 38 d (24 June–31 July 2015), allowing a 1-week spin-up to analyze the model output for July. An evaluation of large-scale meteorological performance with ERA-Interim reanalysis fields can be found in Sect. S2 of the Supplement.</p>
      <p id="d1e1468">We used anthropogenic emissions from the Netherlands Organisation for Applied Scientific Research – Monitoring Atmospheric Composition and Climate (TNO-MACC-III) inventory <xref ref-type="bibr" rid="bib1.bibx48" id="paren.39"/> for 2011, the most recent inventory available when the model experiments were performed. TNO-MACC-III contains anthropogenic emissions for lumped species groups (<inline-formula><mml:math id="M105" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and VOCs). <inline-formula><mml:math id="M106" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions were partitioned assuming that 97 % is emitted as NO and 3 % as <inline-formula><mml:math id="M107" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. VOC emissions were divided over 15 emission categories in CBM-Z, following the VOC speciation by <xref ref-type="bibr" rid="bib1.bibx4" id="text.40"/>. This speciation procedure is further described in Table S3 of the Supplement. Point-source emissions were distributed over the five lowermost model layers following sector-specific emission altitude profiles <xref ref-type="bibr" rid="bib1.bibx8" id="paren.41"/>.</p>
      <p id="d1e1514">Biogenic emissions of VOCs and soil <inline-formula><mml:math id="M108" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were calculated online with the Model of Emissions of Gases and Aerosols from Nature (MEGAN) implementation within WRF-Chem <xref ref-type="bibr" rid="bib1.bibx34 bib1.bibx35" id="paren.42"/>. The domain-total biogenic isoprene emissions are 1.82 Tg of isoprene, which is slightly lower than the 9-year spread of 2–4.5 Tg isoprene for July, based on an inverse modeling study using OMI HCHO column measurements for 2005–2013 <xref ref-type="bibr" rid="bib1.bibx6" id="paren.43"/>. We simulate lightning <inline-formula><mml:math id="M109" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions using a parameterization based on cloud-top height <xref ref-type="bibr" rid="bib1.bibx71 bib1.bibx97" id="paren.44"/>, using a flash rate of 80 mol flash<inline-formula><mml:math id="M110" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> based on a recent satellite-based estimate <xref ref-type="bibr" rid="bib1.bibx68" id="paren.45"/>. Simulations with higher flash rates of 500 mol flash<inline-formula><mml:math id="M111" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>  <xref ref-type="bibr" rid="bib1.bibx67" id="paren.46"/> and 310 mol flash<inline-formula><mml:math id="M112" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>  <xref ref-type="bibr" rid="bib1.bibx64" id="paren.47"/> resulted in overestimated upper-tropospheric contributions to the <inline-formula><mml:math id="M113" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns relative to OMI.</p>
      <p id="d1e1606">Anthropogenic emissions are the dominant <inline-formula><mml:math id="M114" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> source over Europe in July, with a total monthly emission strength of 304 Gg N (76 %). Minor contributions are associated with lightning (81.4 Gg N; 20 %) and soils (15.0 Gg N; 4 %). We note that especially soil <inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions are low compared to previous studies, in which soils, including agricultural areas, have been estimated to contribute 40 % to the total European <inline-formula><mml:math id="M116" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission budget <xref ref-type="bibr" rid="bib1.bibx42 bib1.bibx30" id="paren.48"/>.</p>
      <p id="d1e1646">Meteorological initial and boundary conditions were taken from ERA-Interim reanalysis data <xref ref-type="bibr" rid="bib1.bibx22" id="paren.49"/>. Chemical boundary conditions for <inline-formula><mml:math id="M117" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, NO, <inline-formula><mml:math id="M118" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, CO and peroxyacetyl nitrate (PAN) are taken from the Copernicus Atmosphere Monitoring Service (CAMS) chemical reanalysis product for Europe <xref ref-type="bibr" rid="bib1.bibx40" id="paren.50"><named-content content-type="post">retrieved at <uri>http://apps.ecmwf.int/datasets/data/cams-nrealtime/levtype=sfc/</uri> (last access: 18 September 2019)</named-content></xref>. Upper boundary conditions for ozone were prescribed with climatological values (retrieved at <uri>https://www2.acom.ucar.edu/wrf-chem/wrf-chem-tools-community</uri>, last access: 17 September 2019).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><?xmltex \opttitle{AirBase {$\protect\chem{NO_{2}}$} and {$\protect\chem{O_{3}}$} in situ measurements}?><title>AirBase <inline-formula><mml:math id="M119" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in situ measurements</title>
      <p id="d1e1716">Surface measurements are taken from the European Air Quality Data Portal operated by the European Environment Agency, hereafter referred to as AirBase <xref ref-type="bibr" rid="bib1.bibx26" id="paren.51"/>. We<?pagebreak page11824?> used all data at rural background stations from the validated E1a data stream. The large availability of the data allows us to make a strict selection on data availability. For monthly averages, we discard stations if data are missing for more than 24 h. Stations used for the evaluation of monthly averages at 12:00 UTC may have a maximum data gap of one data point. This resulted in a final selection of 184–397 stations, depending on the performance metric (see Table <xref ref-type="table" rid="Ch1.T1"/>). In our analysis of <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M122" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, we evaluate monthly time series and midday (12:00 UTC) concentrations (denoted as [<inline-formula><mml:math id="M123" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>]<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">12</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:mrow></mml:msup></mml:math></inline-formula> and [<inline-formula><mml:math id="M125" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>]<inline-formula><mml:math id="M126" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mn mathvariant="normal">12</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:mrow></mml:msup></mml:math></inline-formula>, respectively). We additionally calculate the maximum daily 8 h mean ozone concentration (MDA8 <inline-formula><mml:math id="M127" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>), a widely applied metric for <inline-formula><mml:math id="M128" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> health impacts.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e1822">Performance statistics of WRF-Chem bottom-up and top-down simulations for July 2015 for several conventionally applied performance metrics (mean bias error (MBE), RMSE, slope and intercept of a linear regression fit of simulations against observations, and <inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> from orthogonal distance regression), as well as the index of agreement <xref ref-type="bibr" rid="bib1.bibx96" id="paren.52"><named-content content-type="pre"><inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:mi>d</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>O</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mo>|</mml:mo><mml:msubsup><mml:mi>P</mml:mi><mml:mi>i</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:mo>|</mml:mo><mml:mo>+</mml:mo><mml:mo>|</mml:mo><mml:msubsup><mml:mi>O</mml:mi><mml:mi>i</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:mo>|</mml:mo><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>; </named-content></xref>, where <inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M132" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represent simulations and observations, respectively. MBE, RMSE and intercept are in units of <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>; slope, <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M136" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula> are unitless.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="14">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right" colsep="1"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:colspec colnum="11" colname="col11" align="right"/>
     <oasis:colspec colnum="12" colname="col12" align="right"/>
     <oasis:colspec colnum="13" colname="col13" align="right"/>
     <oasis:colspec colnum="14" colname="col14" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry rowsep="1" namest="col3" nameend="col8" align="center">Bottom-up </oasis:entry>
         <oasis:entry rowsep="1" namest="col9" nameend="col14" align="center">Top-down </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M137" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3">MBE</oasis:entry>
         <oasis:entry colname="col4">RMSE</oasis:entry>
         <oasis:entry colname="col5">Slope</oasis:entry>
         <oasis:entry colname="col6">Intercept</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col8"><inline-formula><mml:math id="M139" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col9">MBE</oasis:entry>
         <oasis:entry colname="col10">RMSE</oasis:entry>
         <oasis:entry colname="col11">Slope</oasis:entry>
         <oasis:entry colname="col12">Intercept</oasis:entry>
         <oasis:entry colname="col13"><inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col14"><inline-formula><mml:math id="M141" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M142" display="inline"><mml:mover accent="true"><mml:mrow><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">289</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.37</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">2.50</oasis:entry>
         <oasis:entry colname="col5">0.26</oasis:entry>
         <oasis:entry colname="col6">54.27</oasis:entry>
         <oasis:entry colname="col7">0.32</oasis:entry>
         <oasis:entry colname="col8">0.60</oasis:entry>
         <oasis:entry colname="col9">2.18</oasis:entry>
         <oasis:entry colname="col10">17.03</oasis:entry>
         <oasis:entry colname="col11">0.34</oasis:entry>
         <oasis:entry colname="col12">53.23</oasis:entry>
         <oasis:entry colname="col13">0.41</oasis:entry>
         <oasis:entry colname="col14">0.68</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mrow><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mrow><mml:mn mathvariant="normal">12</mml:mn><mml:mi>h</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">397</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15.07</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">24.68</oasis:entry>
         <oasis:entry colname="col5">0.33</oasis:entry>
         <oasis:entry colname="col6">51.63</oasis:entry>
         <oasis:entry colname="col7">0.43</oasis:entry>
         <oasis:entry colname="col8">0.63</oasis:entry>
         <oasis:entry colname="col9"><inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7.56</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col10">19.09</oasis:entry>
         <oasis:entry colname="col11">0.41</oasis:entry>
         <oasis:entry colname="col12">51.13</oasis:entry>
         <oasis:entry colname="col13">0.58</oasis:entry>
         <oasis:entry colname="col14">0.74</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">MDA8 <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">289</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">14.24</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">24.79</oasis:entry>
         <oasis:entry colname="col5">0.28</oasis:entry>
         <oasis:entry colname="col6">55.98</oasis:entry>
         <oasis:entry colname="col7">0.40</oasis:entry>
         <oasis:entry colname="col8">0.61</oasis:entry>
         <oasis:entry colname="col9"><inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7.38</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col10">19.99</oasis:entry>
         <oasis:entry colname="col11">0.36</oasis:entry>
         <oasis:entry colname="col12">55.72</oasis:entry>
         <oasis:entry colname="col13">0.53</oasis:entry>
         <oasis:entry colname="col14">0.70</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M150" display="inline"><mml:mover accent="true"><mml:mrow><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">184</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.49</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">3.86</oasis:entry>
         <oasis:entry colname="col5">0.73</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.28</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">0.42</oasis:entry>
         <oasis:entry colname="col8">0.70</oasis:entry>
         <oasis:entry colname="col9"><inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.09</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col10">3.09</oasis:entry>
         <oasis:entry colname="col11">0.89</oasis:entry>
         <oasis:entry colname="col12"><inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.12</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col13">0.46</oasis:entry>
         <oasis:entry colname="col14">0.80</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:msup><mml:mover accent="true"><mml:mrow><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mrow><mml:mn mathvariant="normal">12</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">250</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.96</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">3.56</oasis:entry>
         <oasis:entry colname="col5">0.30</oasis:entry>
         <oasis:entry colname="col6"><inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.03</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col7">0.25</oasis:entry>
         <oasis:entry colname="col8">0.51</oasis:entry>
         <oasis:entry colname="col9"><inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.59</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col10">3.28</oasis:entry>
         <oasis:entry colname="col11">0.33</oasis:entry>
         <oasis:entry colname="col12">0.04</oasis:entry>
         <oasis:entry colname="col13">0.23</oasis:entry>
         <oasis:entry colname="col14">0.53</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><?xmltex \opttitle{OMI {$\protect\chem{NO_{2}}$} column measurements}?><title>OMI <inline-formula><mml:math id="M159" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column measurements</title>
      <p id="d1e2571">We use tropospheric <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns from OMI aboard NASA's Earth Observing System (EOS) Aura mission <xref ref-type="bibr" rid="bib1.bibx54" id="paren.53"/>. The polar-orbiting instrument detects radiation backscattered from the Earth's atmosphere. Retrieval of tropospheric vertical column densities (VCDs) from space follows a three-step procedure <xref ref-type="bibr" rid="bib1.bibx15" id="paren.54"/>. First, total slant columns (SCDs; i.e., columns along the average light path through the atmosphere) are obtained from a spectral fit to the OMI-measured reflectance spectra in the visible wavelength range using the differential optical absorption spectroscopy (DOAS) method. Then, the stratospheric contribution component is separated from the total <inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column via data assimilation into the TM5 global chemistry transport model <xref ref-type="bibr" rid="bib1.bibx23" id="paren.55"/>. The final step is to obtain tropospheric VCDs by dividing the SCDs by a tropospheric air mass factor (AMF) that describes the vertical sensitivity of the instrument to atmospheric <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx28" id="paren.56"/>. This is a function of satellite viewing geometry, surface albedo, terrain height, cloud properties and a priori <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile.</p>
      <p id="d1e2631">The recent EU FP7  QA4ECV project has led to the development of a new OMI <inline-formula><mml:math id="M164" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> data product <xref ref-type="bibr" rid="bib1.bibx13" id="paren.57"/>. The underlying consortium retrieval algorithm is based on the <inline-formula><mml:math id="M165" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column retrieval principles described in <xref ref-type="bibr" rid="bib1.bibx9" id="text.58"/> but with improvements in the three aforementioned steps <xref ref-type="bibr" rid="bib1.bibx15" id="paren.59"/>. <xref ref-type="bibr" rid="bib1.bibx98" id="text.60"/> described how better wavelength calibration and inclusion of liquid water absorption and an intensity offset correction reduced uncertainties in <inline-formula><mml:math id="M166" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> SCDs to <inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.7</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.8</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<inline-formula><mml:math id="M168" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (up to <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">35</mml:mn></mml:mrow></mml:math></inline-formula> %). <xref ref-type="bibr" rid="bib1.bibx57" id="text.61"/> improved the AMF calculation method via the extension of the AMF look-up table with more reference points and a correction for the sphericity of the atmosphere. The ancillary data for the AMF calculation have also improved relative to earlier algorithms such as DOMINO v2 <xref ref-type="bibr" rid="bib1.bibx11" id="paren.62"/>: surface albedo from the 5-year OMI albedo climatology <xref ref-type="bibr" rid="bib1.bibx46" id="paren.63"/>, cloud information from the improved OMI <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M171" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> algorithm <xref ref-type="bibr" rid="bib1.bibx91" id="paren.64"/> and a priori <inline-formula><mml:math id="M172" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles from TM5-MP at 1<inline-formula><mml:math id="M173" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M174" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M175" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx95" id="paren.65"/>. The  study by <xref ref-type="bibr" rid="bib1.bibx57" id="text.66"/> also showed that substantial differences between AMFs arise when different a priori <inline-formula><mml:math id="M176" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles (as well as surface albedo and cloud properties) are used in the retrieval. This underlines that a recalculation of the tropospheric AMFs based on simulated WRF-Chem <inline-formula><mml:math id="M177" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles at <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mn mathvariant="normal">20</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M179" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>, replacing the coarse TM5-MP 1<inline-formula><mml:math id="M180" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M181" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M182" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M183" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles, may help to reduce model–satellite differences <xref ref-type="bibr" rid="bib1.bibx50 bib1.bibx94" id="paren.67"/>, and we will explore this further below.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>AMF recalculation</title>
      <p id="d1e2891">We take care to remove inconsistencies in the model–satellite comparison introduced by different assumptions about the vertical <inline-formula><mml:math id="M184" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile in the satellite product compared to the model. The AMF calculation requires assumptions about the vertical profile of <inline-formula><mml:math id="M185" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to convert slant columns into vertical columns. We replace the a priori TM5-MP <inline-formula><mml:math id="M186" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles (at 1<inline-formula><mml:math id="M187" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M188" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M189" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) by WRF-Chem <inline-formula><mml:math id="M190" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles at a <inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:mn mathvariant="normal">20</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M192" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> resolution. This has two advantages: (1) model–satellite comparisons are no longer affected by differences in model assumptions between WRF-Chem and TM5-MP that lead to different vertical <inline-formula><mml:math id="M193" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles, and (2) the higher-resolution WRF-Chem setup resolves spatial gradients in the a priori profile that are not appropriately captured in TM5-MP due to the coarser model resolution. Single-orbit results indicate that recalculation of the AMFs leads to retrieved columns that are <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<inline-formula><mml:math id="M195" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> higher in densely populated areas and lower or unaffected in surrounding non-urban regions. This effect has been seen before in earlier studies <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx36 bib1.bibx77 bib1.bibx59 bib1.bibx94" id="paren.68"/>.</p>
      <p id="d1e3027">We apply the method described by <xref ref-type="bibr" rid="bib1.bibx50" id="text.69"/> and <xref ref-type="bibr" rid="bib1.bibx12" id="text.70"/> to replace the TM5-MP vertical <inline-formula><mml:math id="M196" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile by the WRF-Chem profile in the calculation of the AMF:
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M197" display="block"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mrow><mml:mi mathvariant="normal">trop</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">WC</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>M</mml:mi><mml:mrow><mml:mi mathvariant="normal">trop</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">TM</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msub><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>l</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>L</mml:mi></mml:msubsup><mml:msub><mml:mi>A</mml:mi><mml:mrow><mml:mi mathvariant="normal">trop</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>l</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">WC</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>l</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>L</mml:mi></mml:msubsup><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>l</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">WC</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">trop</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the tropospheric AMF based on an assumed profile from WRF-Chem (WC) or TM5, <inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mrow><mml:mi mathvariant="normal">trop</mml:mi><mml:mo>,</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the tropospheric averaging kernel element for layer <inline-formula><mml:math id="M200" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>l</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">WRF</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Chem</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the <inline-formula><mml:math id="M202" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column density in model layer <inline-formula><mml:math id="M203" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula>, and <inline-formula><mml:math id="M204" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> is the uppermost TM5-MP layer in the troposphere. The tropospheric averaging kernel in Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>) is defined as follows <xref ref-type="bibr" rid="bib1.bibx14" id="paren.71"/>: <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mi mathvariant="normal">trop</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mo>×</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mi>M</mml:mi><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">trop</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M206" display="inline"><mml:mi>M</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mi mathvariant="normal">trop</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> refer to the AMF and the tropospheric AMF, respectively. Note that the WRF-Chem vertical <inline-formula><mml:math id="M208" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile has been sampled at the TM5-MP vertical layer structure, so <inline-formula><mml:math id="M209" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula> refers to TM5-MP model layers.</p><?xmltex \hack{\newpage}?>
</sec>
</sec>
<?pagebreak page11825?><sec id="Ch1.S3">
  <label>3</label><?xmltex \opttitle{Top-down {$\protect\chem{NO_{\mathit{x}}}$} emissions: methods}?><title>Top-down <inline-formula><mml:math id="M210" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions: methods</title>
      <p id="d1e3311">Satellite-detected <inline-formula><mml:math id="M211" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns are sensitive to <inline-formula><mml:math id="M212" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions at the surface. We exploit this dependence to derive satellite-based surface <inline-formula><mml:math id="M213" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions using local OMI <inline-formula><mml:math id="M214" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns. We apply an improved version of the mass balance procedure <xref ref-type="bibr" rid="bib1.bibx62 bib1.bibx51 bib1.bibx94" id="paren.72"/>, which accounts for non-linear feedback from <inline-formula><mml:math id="M215" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission changes on <inline-formula><mml:math id="M216" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations via OH:
          <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M217" display="block"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">td</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">bu</mml:mi></mml:msub><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi mathvariant="italic">β</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">OMI</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">WC</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">WC</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">bu</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">td</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represent <inline-formula><mml:math id="M220" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions from the bottom-up inventory (bu) and the satellite-based top-down estimate (td), respectively. <inline-formula><mml:math id="M221" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">WC</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> represents the monthly averaged <inline-formula><mml:math id="M222" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical column density (VCD) simulated by WRF-Chem, and <inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">OMI</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the monthly averaged modified QA4ECV OMI <inline-formula><mml:math id="M224" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD using air mass factors based on the original WRF-Chem <inline-formula><mml:math id="M225" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical profile (<inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">WC</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>; see Sect. <xref ref-type="sec" rid="Ch1.S2.SS4"/>). WRF-Chem <inline-formula><mml:math id="M227" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCDs are co-sampled with valid OMI observations. We only use OMI and WRF-Chem data for pixels with valid satellite observations for at least 4 d in July 2015 to minimize the random error in the satellite retrieval.</p>
      <p id="d1e3587">We account for the non-linear <inline-formula><mml:math id="M228" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-OH chemistry feedback via a dimensionless scaling factor <inline-formula><mml:math id="M229" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>, for which we performed a perturbation simulation with surface emissions increased by 20 %:
          <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M230" display="block"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mi mathvariant="normal">bu</mml:mi><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1.2</mml:mn></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">bu</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">bu</mml:mi><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1.2</mml:mn></mml:mrow></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">bu</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">0.2</mml:mn><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">bu</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">bu</mml:mi><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1.2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">bu</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the <inline-formula><mml:math id="M232" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns after a WRF-Chem simulation with bottom-up <inline-formula><mml:math id="M233" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, and <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">bu</mml:mi><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1.2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the change in <inline-formula><mml:math id="M235" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns after perturbing bottom-up <inline-formula><mml:math id="M236" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions by <inline-formula><mml:math id="M237" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> %.
In low-<inline-formula><mml:math id="M238" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> environments, this perturbation leads to higher OH levels and thus to more efficient <inline-formula><mml:math id="M239" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> loss to <inline-formula><mml:math id="M240" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HNO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, so that a <inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> is needed to achieve column agreement. In <inline-formula><mml:math id="M242" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-rich environments, however, OH levels are suppressed by enhanced <inline-formula><mml:math id="M243" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions so that the relative increase in <inline-formula><mml:math id="M244" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns is larger than 20 %, resulting in a <inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>. The use of <inline-formula><mml:math id="M246" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> to account for the sensitivity of the <inline-formula><mml:math id="M247" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column to local emissions is essentially a linearization step of non-linear effects due to chemistry.</p>
      <p id="d1e3881">Application of Eqs. (<xref ref-type="disp-formula" rid="Ch1.E2"/>) and (<xref ref-type="disp-formula" rid="Ch1.E3"/>) would lead to updated <inline-formula><mml:math id="M248" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions and consequently also to modifications in the WRF-Chem <inline-formula><mml:math id="M249" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile shapes in response to the updates <xref ref-type="bibr" rid="bib1.bibx94" id="paren.73"><named-content content-type="pre">e.g.,</named-content></xref>. This is accounted for via <inline-formula><mml:math id="M250" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula>, which we also obtain from the simulation with <inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> % perturbed emissions:
          <disp-formula id="Ch1.E4" content-type="numbered"><label>4</label><mml:math id="M252" display="block"><mml:mrow><mml:mi mathvariant="italic">γ</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">OMI</mml:mi><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1.2</mml:mn></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">OMI</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">OMI</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">WC</mml:mi><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1.2</mml:mn></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">WC</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">WC</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">bu</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">WC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represents the WRF-Chem <inline-formula><mml:math id="M254" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical column density (VCD), and <inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">OMI</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represents the OMI <inline-formula><mml:math id="M256" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD retrieved using WRF-Chem <inline-formula><mml:math id="M257" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical profiles from the bottom-up simulation (<inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">WC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>), for the bottom-up (subscript bu) and emission perturbation simulation (subscript 1.2), respectively. Our approach to calculate <inline-formula><mml:math id="M259" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> differs from <xref ref-type="bibr" rid="bib1.bibx94" id="text.74"/>, who derived <inline-formula><mml:math id="M260" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> from a separate simulation after accounting for <inline-formula><mml:math id="M261" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>. Our approach requires one less forward simulation and is thus computationally more efficient, with little impact (<inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> %) on total derived emissions compared to the approach by <xref ref-type="bibr" rid="bib1.bibx94" id="text.75"/>.</p>
      <p id="d1e4131">We calculate the scaling factors <inline-formula><mml:math id="M263" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M264" display="inline"><mml:mi mathvariant="italic">γ</mml:mi></mml:math></inline-formula> for all land-based and shipping lane WRF-Chem cells based on monthly mean <inline-formula><mml:math id="M265" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns (i.e., ocean-based pixels with emissions above a threshold value of 1 mol km<inline-formula><mml:math id="M266" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h<inline-formula><mml:math id="M267" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). These pixels thus also include shipping lanes and offshore oil platforms. OMI-inferred emission changes are calculated locally, i.e., for each individual model cell for which the aforementioned data availability criteria are fulfilled. This differs from previous work where these factors were calculated for regions containing multiple model cells <xref ref-type="bibr" rid="bib1.bibx93 bib1.bibx94" id="paren.76"/> or for individual pixels in global models with a coarse resolution <xref ref-type="bibr" rid="bib1.bibx51" id="paren.77"><named-content content-type="pre">e.g.,</named-content></xref>.</p>
      <p id="d1e4192">We discard the effect of transport of <inline-formula><mml:math id="M268" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> away from the source region (“smearing”). In July, solar intensity in Europe is close to its annual peak, which means that the <inline-formula><mml:math id="M269" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lifetime<?pagebreak page11826?> is short due to efficient oxidation. Therefore, the clear-sky monthly mean <inline-formula><mml:math id="M270" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column difference between model and satellite is indicative of local <inline-formula><mml:math id="M271" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission updates. Previous studies showed that this method reduces the model–satellite <inline-formula><mml:math id="M272" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column difference but does not resolve it completely <xref ref-type="bibr" rid="bib1.bibx94 bib1.bibx31" id="paren.78"><named-content content-type="pre">e.g.,</named-content></xref> as a result of the linearization that is applied in the perturbation calculation. Nonetheless, we will show in this study that the systematic bias between WRF-Chem and OMI <inline-formula><mml:math id="M273" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns is largely removed after application of Eqs. (<xref ref-type="disp-formula" rid="Ch1.E2"/>)–(<xref ref-type="disp-formula" rid="Ch1.E4"/>).</p>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Bottom-up model evaluation</title>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><?xmltex \opttitle{Surface {$\protect\chem{O_{3}}$}}?><title>Surface <inline-formula><mml:math id="M274" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e4297">We start our evaluation of <inline-formula><mml:math id="M275" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> chemistry in WRF-Chem (with bottom-up <inline-formula><mml:math id="M276" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, i.e., not yet based on the OMI-inferred <inline-formula><mml:math id="M277" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions) by a comparison of monthly averaged 24 h mean surface ozone simulations with AirBase observations (Fig. <xref ref-type="fig" rid="Ch1.F1"/>a and b; Table <xref ref-type="table" rid="Ch1.T1"/>). WRF-Chem reproduces the spatial distribution of surface ozone satisfactorily, with an increase in surface <inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations from north to south, as reported elsewhere <xref ref-type="bibr" rid="bib1.bibx60" id="paren.79"><named-content content-type="pre">e.g.,</named-content></xref>. Highest concentrations are found around the Mediterranean basin. <inline-formula><mml:math id="M279" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations over central and southern Europe are underestimated in WRF-Chem. Simulated monthly averaged concentrations do not exceed 110 <inline-formula><mml:math id="M280" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M281" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, while higher concentrations were observed at several stations in the southern part of the domain. Most notably, WRF-Chem does not capture observed high concentrations of <inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">130</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M283" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M284" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in northern Italy. The good agreement between WRF-Chem and in situ data in the western part of the domain close to the model boundaries with a prevailing westerly circulation indicates that the model boundary conditions describe inflow of long-lived compounds such as <inline-formula><mml:math id="M285" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from the western boundary well.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><label>Figure 1</label><caption><p id="d1e4429">Monthly averaged surface <inline-formula><mml:math id="M286" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and simulated by WRF-Chem with bottom-up <inline-formula><mml:math id="M287" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions <bold>(a, c)</bold> and observed at AirBase stations <bold>(b, d)</bold>. Panels <bold>(a)</bold> and <bold>(b)</bold> are monthly averages, and <bold>(b)</bold> and <bold>(d)</bold> are sampled at 12:00 UTC.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f01.png"/>

        </fig>

      <p id="d1e4479">Monthly averaged ozone concentrations are an important and widely used metric to evaluate model skill but are not necessarily indicative of the peak ozone concentrations that typically occur in the afternoon. These monthly averages include the nocturnal conditions with generally the presence of stable boundary layers, in which the titration of ozone in the <inline-formula><mml:math id="M288" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-saturated regions is difficult to model <xref ref-type="bibr" rid="bib1.bibx39" id="paren.80"><named-content content-type="pre">e.g.,</named-content></xref>. The simulated and observed monthly averaged ozone concentrations at 12:00 UTC (Fig. <xref ref-type="fig" rid="Ch1.F1"/>c, d) demonstrate a similar geographical distribution compared to the monthly average but with higher values because photochemical ozone production generally peaks during daytime. This figure demonstrates that peak ozone values occur around the Mediterranean basin, most prominently in northern Italy and Spain, where the levels of sunlight and ozone precursor concentrations are high. WRF-Chem shows elevated ozone with respect to adjacent areas, but maximum simulated ozone levels do not exceed 120 <inline-formula><mml:math id="M289" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M290" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. This underestimation of peak ozone concentrations is also apparent from in Fig. <xref ref-type="fig" rid="Ch1.F8"/>b (discussed in more detail in Sect. <xref ref-type="sec" rid="Ch1.S6"/>), which shows the simulated versus the observed 12:00 UTC ozone concentrations.</p>
      <?pagebreak page11827?><p id="d1e4526">Our results are in agreement with previous regional chemistry model evaluations for Europe. Such studies typically focus on seasonal variability; we compare our results with the results for European summer (JJA) from those studies. <xref ref-type="bibr" rid="bib1.bibx39" id="text.81"/> found that a model ensemble underestimates the daytime maximum <inline-formula><mml:math id="M291" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration for sites where observed <inline-formula><mml:math id="M292" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations exceed 120–140 <inline-formula><mml:math id="M293" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M294" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which agrees with our results. In that study, the ensemble mean model bias tends to become more negative for observed concentrations above 80 <inline-formula><mml:math id="M295" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M296" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx39" id="paren.82"/>. The two ensemble members that use CBM-Z chemistry, similar to our WRF-Chem model setup, are qualitatively in line with the ensemble mean, lending support to the use of CBM-Z in this study. <xref ref-type="bibr" rid="bib1.bibx60" id="text.83"/> compared two chemical mechanisms in a WRF-Chem evaluation study over Europe and reported large differences in the representation of peak summer (JJA) ozone: one chemistry model (MOZART) overestimates mean and MDA8 ozone, while simulations with the other chemistry scheme (RADM2) shows underestimations of peak ozone that are in line with our findings. We will discuss the dependence of ozone simulation on the chemical mechanism choice in detail in Sect. <xref ref-type="sec" rid="Ch1.S7"/>. The ensemble model mean daytime ozone concentration in <xref ref-type="bibr" rid="bib1.bibx81" id="text.84"/> is underestimated by 10–30 <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M298" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in four subregions of the European continent. <xref ref-type="bibr" rid="bib1.bibx88" id="text.85"/> analyzed WRF-Chem <inline-formula><mml:math id="M299" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations for 2007 and found that yearly averaged midday ozone is underestimated by approximately 10 <inline-formula><mml:math id="M300" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M301" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The model performance in the aforementioned studies is qualitatively similar to our findings and the magnitude compares well. Overall, most studies consistently show underestimated daytime <inline-formula><mml:math id="M302" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, regardless of the chemical mechanism, model resolution and other model assumptions. To further explore the potential role of a model misrepresentation of <inline-formula><mml:math id="M303" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations in explaining this model <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> bias, the next sections will focus on a model comparison with in situ and remote sensing data for <inline-formula><mml:math id="M305" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><label>Figure 2</label><caption><p id="d1e4708">As Fig. <xref ref-type="fig" rid="Ch1.F1"/> but for <inline-formula><mml:math id="M306" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f02.png"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><?xmltex \opttitle{Surface {$\protect\chem{NO_{2}}$}}?><title>Surface <inline-formula><mml:math id="M307" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e4749">Figure <xref ref-type="fig" rid="Ch1.F2"/>a and b present a comparison of monthly averaged surface concentrations of <inline-formula><mml:math id="M308" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> between WRF-Chem and AirBase (note the logarithmic scale). Performance statistics are shown in Table <xref ref-type="table" rid="Ch1.T1"/>. We find that WRF-Chem reproduces the spatial distribution well, with peak <inline-formula><mml:math id="M309" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> occurring in northwest Europe and northern Italy. In these regions with high <inline-formula><mml:math id="M310" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, average WRF-Chem-simulated concentrations are however underestimated by up to 10 <inline-formula><mml:math id="M311" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M312" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> compared to observations. AirBase concentrations show a region with elevated <inline-formula><mml:math id="M313" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations in southwest Germany. WRF-Chem also shows elevated <inline-formula><mml:math id="M314" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations in this region but does not reach such elevated concentrations. Overall, WRF-Chem shows more spatial heterogeneity in surface <inline-formula><mml:math id="M315" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations than is apparent from the observations. Observed <inline-formula><mml:math id="M316" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations in background areas in Spain, France and eastern Europe are 2–5 <inline-formula><mml:math id="M317" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M318" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> or higher, while the model consistently simulates values <inline-formula><mml:math id="M319" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M320" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M321" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in these regions. This overall underestimation is also seen  in Fig. <xref ref-type="fig" rid="Ch1.F8"/>, where the simulated daily mean <inline-formula><mml:math id="M322" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration is shown against AirBase observations. The model performance of our WRF-Chem setup is in line with previous WRF-Chem studies. <xref ref-type="bibr" rid="bib1.bibx60" id="text.86"/> found small overestimations (0.67–2.96 <inline-formula><mml:math id="M323" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M324" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) in mean <inline-formula><mml:math id="M325" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Another study found an annual average mean bias of <inline-formula><mml:math id="M326" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.9</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M327" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M328" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, caused by underestimations of peak <inline-formula><mml:math id="M329" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in WRF-Chem <xref ref-type="bibr" rid="bib1.bibx88" id="paren.87"/>.</p>
      <p id="d1e4998">A comparison between WRF-Chem and AirBase monthly averaged 12:00 UTC <inline-formula><mml:math id="M330" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations is presented in Fig. <xref ref-type="fig" rid="Ch1.F2"/>c and d and Table <xref ref-type="table" rid="Ch1.T1"/>. We find that WRF-Chem on average strongly underestimates midday <inline-formula><mml:math id="M331" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations by 2.96 <inline-formula><mml:math id="M332" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M333" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (38.5 %).</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><?xmltex \opttitle{{$\protect\chem{NO_{2}}$} VCD}?><title><inline-formula><mml:math id="M334" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD</title>
      <p id="d1e5067">Before we perform a comparison between <inline-formula><mml:math id="M335" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCDs from WRF-Chem and OMI, we first discuss the effect of the <inline-formula><mml:math id="M336" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile shape on the OMI-retrieved columns. Figure <xref ref-type="fig" rid="Ch1.F3"/> shows the change in the monthly averaged OMI <inline-formula><mml:math id="M337" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column density after replacing TM5-MP <inline-formula><mml:math id="M338" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles by WRF-Chem profiles using the procedure described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS4"/>. The OMI <inline-formula><mml:math id="M339" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCDs change most prominently over urban/industrial areas such as the Netherlands, Paris, Berlin, Madrid, Milan and Rome. The background areas are largely unaffected or show small (<inline-formula><mml:math id="M340" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<inline-formula><mml:math id="M341" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) <inline-formula><mml:math id="M342" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD increases (e.g., Spain) or decreases (regions in France, Germany, Poland, Ukraine and Romania). The vertical <inline-formula><mml:math id="M343" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profile over sea regions in western Europe strongly peaks at the surface, because shipping <inline-formula><mml:math id="M344" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in WRF-Chem is emitted in the lowermost model layer. Overall, the average <inline-formula><mml:math id="M345" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column change over non-land regions is small (<inline-formula><mml:math id="M346" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> %).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><label>Figure 3</label><caption><p id="d1e5216">Change in monthly averaged OMI-retrieved <inline-formula><mml:math id="M347" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns after using WRF-Chem vertical <inline-formula><mml:math id="M348" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> profiles to calculate the air mass factors (AMFs) in the OMI retrieval, as described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS4"/>.</p></caption>
          <?xmltex \igopts{width=179.252362pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f03.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><?xmltex \currentcnt{4}?><label>Figure 4</label><caption><p id="d1e5252">Monthly averaged tropospheric <inline-formula><mml:math id="M349" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical column densities from <bold>(a)</bold> WRF-Chem with bottom-up <inline-formula><mml:math id="M350" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, <bold>(b)</bold> OMI and <bold>(c)</bold> their difference (WRF-Chem – OMI). WRF-Chem <inline-formula><mml:math id="M351" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns have been co-sampled with OMI, and pixels are shown when <inline-formula><mml:math id="M352" display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f04.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><label>Figure 5</label><caption><p id="d1e5321">Surface <inline-formula><mml:math id="M353" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions for <bold>(a)</bold> the bottom-up simulation (TNO-MACC-III anthropogenic plus MEGAN soil <inline-formula><mml:math id="M354" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions) and <bold>(b)</bold> the top-down simulation; panel <bold>(c)</bold> depicts the change in surface <inline-formula><mml:math id="M355" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions after the recalculation procedure.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f05.png"/>

        </fig>

      <?pagebreak page11828?><p id="d1e5373">We subsequently compare WRF-Chem to this modified OMI product. The monthly averaged <inline-formula><mml:math id="M356" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical column densities from WRF-Chem and OMI are displayed in Fig. <xref ref-type="fig" rid="Ch1.F4"/>. The model is sampled at 12:00 UTC, close to the OMI overpass time of <inline-formula><mml:math id="M357" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 13:30 LT, and is co-sampled with valid satellite observations. There is good agreement in the spatial distribution of monthly averaged <inline-formula><mml:math id="M358" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCDs (<inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.68</mml:mn></mml:mrow></mml:math></inline-formula>). <inline-formula><mml:math id="M360" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns are underestimated by <inline-formula><mml:math id="M361" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<inline-formula><mml:math id="M362" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> on average, with strong underestimations of up to <inline-formula><mml:math id="M363" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<inline-formula><mml:math id="M364" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in urban and industrial northwestern Europe. WRF-Chem overestimates <inline-formula><mml:math id="M365" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns in some isolated urban areas with high <inline-formula><mml:math id="M366" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions such as London, Madrid, Rome and in parts of eastern Europe.</p>
      <p id="d1e5511">We note that Fig. <xref ref-type="fig" rid="Ch1.F4"/> shows small underestimations of the simulated <inline-formula><mml:math id="M367" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD compared to OMI (<inline-formula><mml:math id="M368" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<inline-formula><mml:math id="M369" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) in background regions (e.g., the Alps, rural Spain and France, Scandinavia) and over the oceans. Simulated <inline-formula><mml:math id="M370" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns therefore show stronger spatial gradients than OMI-retrieved columns, which is in line with <xref ref-type="bibr" rid="bib1.bibx38" id="text.88"/>. Other distinct underestimations in the simulated <inline-formula><mml:math id="M371" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns compared to OMI indicate a misrepresentation of emissions. For example, the simulated <inline-formula><mml:math id="M372" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column in northwestern Spain is underestimated by <inline-formula><mml:math id="M373" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<inline-formula><mml:math id="M374" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> compared to OMI. The enhanced <inline-formula><mml:math id="M375" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns in this region mainly reflect the contribution to atmospheric <inline-formula><mml:math id="M376" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> by power plant emissions. Although emissions from power plants should have decreased in recent years in this region <xref ref-type="bibr" rid="bib1.bibx100" id="paren.89"/>, these emissions seem to be underestimated in WRF-Chem. However, since these results are only representative of July 2015, a more dedicated analysis is needed to further corroborate this hypothesis.</p>
      <p id="d1e5646">We have shown that our WRF-Chem setup with bottom-up emissions underestimates <inline-formula><mml:math id="M377" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with respect to both surface and column measurements. To combine these model comparisons against different data sources, we already discuss parts of Fig. <xref ref-type="fig" rid="Ch1.F9"/>, which compares the agreement between simulations with bottom-up and top-down emissions. Figure <xref ref-type="fig" rid="Ch1.F9"/>a shows the relative difference of WRF-Chem against AirBase and OMI <inline-formula><mml:math id="M378" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> binned as a function of bottom-up anthropogenic emission strength. This shows an overall underestimation of WRF-Chem at the surface and in the troposphere, except for regions with strongest emissions. There is a relatively larger model underestimation of surface <inline-formula><mml:math id="M379" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> than of the <inline-formula><mml:math id="M380" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD in regions with comparatively low emissions. Given that the surface <inline-formula><mml:math id="M381" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratios are more sensitive to surface emissions than the <inline-formula><mml:math id="M382" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column <xref ref-type="bibr" rid="bib1.bibx55" id="paren.90"/>, this suggests that emissions are generally too low in WRF-Chem, but especially that emissions in rural background regions are underestimated. This, in turn, suggests that the representation of surface <inline-formula><mml:math id="M383" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in WRF-Chem (anthropogenic emissions for 2011 and online calculated natural soil emissions) are too low to explain the observations in July 2015. In the following section, we will derive satellite-constrained <inline-formula><mml:math id="M384" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions and discuss potential reasons for this mismatch.</p>
</sec>
</sec>
<?pagebreak page11829?><sec id="Ch1.S5">
  <label>5</label><?xmltex \opttitle{Satellite-derived {$\protect\chem{NO_{\mathit{x}}}$} emissions}?><title>Satellite-derived <inline-formula><mml:math id="M385" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions</title>
<sec id="Ch1.S5.SS1">
  <label>5.1</label><title>Top-down emissions</title>
      <p id="d1e5774">We derive top-down <inline-formula><mml:math id="M386" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions using the method described in Sect. <xref ref-type="sec" rid="Ch1.S3"/>. Figure <xref ref-type="fig" rid="Ch1.F5"/> shows the July total bottom-up and top-down surface <inline-formula><mml:math id="M387" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions and their difference. Top-down <inline-formula><mml:math id="M388" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions amount to 498 Gg N, which is 56 % higher than the bottom-up inventory, and increases occur across the domain (Fig. <xref ref-type="fig" rid="Ch1.F5"/>c). <inline-formula><mml:math id="M389" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions are reduced in several isolated grid cells that generally correspond to urban areas. The difference between top-down and bottom-up emissions is larger than the 16 % increase reported by <xref ref-type="bibr" rid="bib1.bibx65" id="text.91"/>, although that study found strong (40 %–67 %) local increases in areas with high <inline-formula><mml:math id="M390" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions such as Belgium, western Germany and northern Italy.</p>
      <p id="d1e5842">Our top-down emissions are much higher than the bottom-up emissions over Germany and Poland. Over Belgium and the Netherlands, the difference between top-down and bottom-up emissions is also substantial but notably smaller despite larger differences between OMI and WRF-Chem <inline-formula><mml:math id="M391" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns over the low countries (Fig. <xref ref-type="fig" rid="Ch1.F4"/>c). This reflects the chemical regime with very high bottom-up <inline-formula><mml:math id="M392" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in this region, resulting in suppressed midday OH concentrations and consequently longer <inline-formula><mml:math id="M393" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lifetimes (as diagnosed by low beta values over northwestern Europe in Fig. S1 of the Supplement).</p>
      <p id="d1e5880">We subsequently replace bottom-up emissions with our observation-constrained top-down <inline-formula><mml:math id="M394" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions and perform a new WRF-Chem simulation. As expected, the new <inline-formula><mml:math id="M395" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns agree much better with the OMI <inline-formula><mml:math id="M396" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns than those from the simulation with bottom-up emissions  (Fig. <xref ref-type="fig" rid="Ch1.F6"/>). WRF-Chem with bottom-up emissions generally underestimates OMI <inline-formula><mml:math id="M397" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns by 23.4 %. As expected, the simulations with the top-down emissions agree better with OMI, and the slope of 0.98 between the new WRF-Chem and OMI <inline-formula><mml:math id="M398" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns (Fig. <xref ref-type="fig" rid="Ch1.F6"/>b) suggests that the systematic underestimation in the model is effectively resolved by applying the top-down emissions. The mean relative error is reduced to <inline-formula><mml:math id="M399" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7.5</mml:mn></mml:mrow></mml:math></inline-formula> %, and the spatial correlation coefficient between WRF-Chem and OMI <inline-formula><mml:math id="M400" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> also improves considerably (from 0.68 to 0.84).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><?xmltex \currentcnt{6}?><label>Figure 6</label><caption><p id="d1e5967"><inline-formula><mml:math id="M401" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical column density scatter plots of WRF-Chem against OMI, presented as a heat map with a bin size of <inline-formula><mml:math id="M402" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.25</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<inline-formula><mml:math id="M403" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for WRF-Chem with bottom-up emissions <bold>(a)</bold> and WRF-Chem with OMI-derived top-down surface <inline-formula><mml:math id="M404" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions <bold>(b)</bold>. The OMI <inline-formula><mml:math id="M405" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCDs in panels <bold>(a)</bold> and <bold>(b)</bold> are calculated with AMFs based on <inline-formula><mml:math id="M406" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical profiles of the WRF-Chem simulations against which they are compared, to ensure a consistent model–satellite comparison. The solid black lines represent the <inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> line, and the dashed lines display the orthogonal distance regression fits.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f06.png"/>

        </fig>

</sec>
<sec id="Ch1.S5.SS2">
  <label>5.2</label><title>Attribution to emission sources</title>
      <p id="d1e6079">Figure <xref ref-type="fig" rid="Ch1.F7"/> shows the bottom-up and top-down <inline-formula><mml:math id="M408" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions as a function of the bottom-up anthropogenic emission strength. This comparison demonstrates that top-down <inline-formula><mml:math id="M409" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions are higher than bottom-up emissions regardless of the emission strength. However, top-down emissions are 50 %–100 % higher than bottom-up estimates for relatively weak emissions between 0.5 and 50 Mg N month<inline-formula><mml:math id="M410" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cell<inline-formula><mml:math id="M411" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and only up to 20 % higher for some urban and industrial hotspots (Fig. <xref ref-type="fig" rid="Ch1.F7"/>b). This 0.5–50 Mg N month<inline-formula><mml:math id="M412" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> range is dominated by WRF-Chem grid cells located in the rural areas of Europe, excluding the largest urban agglomerations as well as low-emission regions such as mountainous areas. Our substantially larger top-down emissions partly reflect a required increase in <inline-formula><mml:math id="M413" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in areas where soil NO emissions are expected to be a dominant <inline-formula><mml:math id="M414" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> source. Soil NO emissions are simulated in WRF-Chem using an implementation of the MEGAN biogenic emission model. The observed discrepancy between the WRF-Chem-simulated and OMI-observed <inline-formula><mml:math id="M415" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD triggers to assess how much of this discrepancy can be attributed to this model's representation of soil NO emissions.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><?xmltex \currentcnt{7}?><label>Figure 7</label><caption><p id="d1e6180">Difference between bottom-up and top-down surface <inline-formula><mml:math id="M416" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, expressed as <bold>(a)</bold> a bar plot (note the logarithmic scale) of median emissions binned by bottom-up anthropogenic <inline-formula><mml:math id="M417" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions (error bars indicate the interquartile range) and <bold>(b)</bold> a bar plot of relative emission differences <inline-formula><mml:math id="M418" display="inline"><mml:mrow><mml:mfenced close=")" open="("><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi mathvariant="normal">posterior</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">prior</mml:mi></mml:mrow><mml:mi mathvariant="normal">prior</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:math></inline-formula> between the bars in panel <bold>(a)</bold>. In panel <bold>(b)</bold>, we define the relative anthropogenic emission difference to be the median of the relative change between top-down and bottom-up emissions in anthropogenic-dominated regions (shaded, with bottom-up emissions <inline-formula><mml:math id="M419" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> Mg N month<inline-formula><mml:math id="M420" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cell<inline-formula><mml:math id="M421" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=179.252362pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f07.png"/>

        </fig>

      <?pagebreak page11830?><p id="d1e6276">To separate the soil <inline-formula><mml:math id="M422" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> contribution from the anthropogenic emission updates, we perform a simple budget calculation as a first-order constraint on the partitioning of the top-down emissions between their anthropogenic and soil-based sources. We assume that the relative difference in anthropogenic sources is uniform over the emission bins in Fig. <xref ref-type="fig" rid="Ch1.F7"/>. This factor is calculated as the median of the relative change in emissions for the three highest bins (<inline-formula><mml:math id="M423" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula> Mg N cell<inline-formula><mml:math id="M424" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for July; see Fig. <xref ref-type="fig" rid="Ch1.F7"/>) and amounts to 0.22. This allows us to attribute the remaining emission difference to soils. Based on this crude first estimate, we derive top-down soil <inline-formula><mml:math id="M425" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions to be 112 Gg N month<inline-formula><mml:math id="M426" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> versus WRF-Chem-/MEGAN-simulated bottom-up soil NO emissions of only 15 Gg N month<inline-formula><mml:math id="M427" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The anthropogenic enhancement factor is relatively uncertain but does not strongly impact our derived posterior soil <inline-formula><mml:math id="M428" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission estimate: if, instead of the median (<inline-formula><mml:math id="M429" display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.22</mml:mn></mml:mrow></mml:math></inline-formula>), we use the mean relative change in emissions for the three highest bins (<inline-formula><mml:math id="M430" display="inline"><mml:mrow><mml:mi mathvariant="italic">μ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.41</mml:mn></mml:mrow></mml:math></inline-formula>), our soil contribution is still a factor <inline-formula><mml:math id="M431" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> larger (69.0 Gg N month<inline-formula><mml:math id="M432" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) compared to WRF-Chem's simulated bottom-up soil NO source. Therefore, this first-order estimation suggests that a substantial fraction (43 %–69 %) of the <inline-formula><mml:math id="M433" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission increment after optimization can be attributed to soils.</p>
      <p id="d1e6422">To evaluate the derived total soil <inline-formula><mml:math id="M434" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, we perform a comparison with literature-based estimates in Table <xref ref-type="table" rid="Ch1.T2"/>. We find that bottom-up soil <inline-formula><mml:math id="M435" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions are underestimated by a factor of 5–7 compared to previous studies. In some of those studies <xref ref-type="bibr" rid="bib1.bibx30" id="paren.92"><named-content content-type="pre">e.g.,</named-content></xref>, land use management practices (fertilizer and manure application) provide a substantial contribution to European soil NO emissions, a feature that appears to be missing in the representation of soil NO emissions in WRF-Chem. This supports our hypothesis that a substantial fraction of the increase in surface <inline-formula><mml:math id="M436" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions may be attributed to soils. We will discuss this further in Sect. <xref ref-type="sec" rid="Ch1.S7"/>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><?xmltex \currentcnt{2}?><label>Table 2</label><caption><p id="d1e6471">Comparison of WRF-Chem surface <inline-formula><mml:math id="M437" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in July (in Tg N month<inline-formula><mml:math id="M438" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, unless indicated otherwise) with literature-reported values.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Year</oasis:entry>
         <oasis:entry colname="col3">Region</oasis:entry>
         <oasis:entry colname="col4">Surface</oasis:entry>
         <oasis:entry colname="col5">Anthropogenic</oasis:entry>
         <oasis:entry colname="col6">Soils</oasis:entry>
         <oasis:entry colname="col7">Soils (%)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">This study, bottom-up</oasis:entry>
         <oasis:entry colname="col2">2015</oasis:entry>
         <oasis:entry colname="col3">Maps in this  study</oasis:entry>
         <oasis:entry colname="col4">0.32</oasis:entry>
         <oasis:entry colname="col5">0.30</oasis:entry>
         <oasis:entry colname="col6">0.015</oasis:entry>
         <oasis:entry colname="col7">4.7</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">This study, top-down, after</oasis:entry>
         <oasis:entry colname="col2">2015</oasis:entry>
         <oasis:entry colname="col3">Maps in this  study</oasis:entry>
         <oasis:entry colname="col4">0.50</oasis:entry>
         <oasis:entry colname="col5">0.39–0.43</oasis:entry>
         <oasis:entry colname="col6">0.07–0.11</oasis:entry>
         <oasis:entry colname="col7">14–22</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">bias attribution (see Sect. <xref ref-type="sec" rid="Ch1.S5.SS2"/>)</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">
                    <xref ref-type="bibr" rid="bib1.bibx85" id="text.93"/>
                  </oasis:entry>
         <oasis:entry colname="col2">1994</oasis:entry>
         <oasis:entry colname="col3">34.9–72.1<inline-formula><mml:math id="M440" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, <inline-formula><mml:math id="M441" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">24.6</mml:mn></mml:mrow></mml:math></inline-formula>–41.9<inline-formula><mml:math id="M442" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
         <oasis:entry colname="col6">–</oasis:entry>
         <oasis:entry colname="col7">17.6<inline-formula><mml:math id="M443" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">
                    <xref ref-type="bibr" rid="bib1.bibx30" id="text.94"/>
                  </oasis:entry>
         <oasis:entry colname="col2">2000</oasis:entry>
         <oasis:entry colname="col3">34–64<inline-formula><mml:math id="M444" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, <inline-formula><mml:math id="M445" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:math></inline-formula>–41<inline-formula><mml:math id="M446" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
         <oasis:entry colname="col6">0.14</oasis:entry>
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">
                    <xref ref-type="bibr" rid="bib1.bibx42" id="text.95"/>
                  </oasis:entry>
         <oasis:entry colname="col2">2000</oasis:entry>
         <oasis:entry colname="col3">35–60<inline-formula><mml:math id="M447" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, <inline-formula><mml:math id="M448" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula>–45<inline-formula><mml:math id="M449" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E</oasis:entry>
         <oasis:entry colname="col4">0.59</oasis:entry>
         <oasis:entry colname="col5">0.35</oasis:entry>
         <oasis:entry colname="col6">0.25</oasis:entry>
         <oasis:entry colname="col7">42.3</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">
                    <xref ref-type="bibr" rid="bib1.bibx65" id="text.96"/>
                  </oasis:entry>
         <oasis:entry colname="col2">2005–2014</oasis:entry>
         <oasis:entry colname="col3">35–60<inline-formula><mml:math id="M450" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, <inline-formula><mml:math id="M451" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>–30<inline-formula><mml:math id="M452" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E</oasis:entry>
         <oasis:entry colname="col4">0.33–0.38</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
         <oasis:entry colname="col6">–</oasis:entry>
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">
                    <xref ref-type="bibr" rid="bib1.bibx21" id="text.97"/>
                  </oasis:entry>
         <oasis:entry colname="col2">2005–2007</oasis:entry>
         <oasis:entry colname="col3">35–70<inline-formula><mml:math id="M453" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, <inline-formula><mml:math id="M454" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula>–35<inline-formula><mml:math id="M455" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
         <oasis:entry colname="col6">0.09</oasis:entry>
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><xref ref-type="bibr" rid="bib1.bibx52" id="text.98"/> referenced</oasis:entry>
         <oasis:entry colname="col2">1983–1995</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M456" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula>–35<inline-formula><mml:math id="M457" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E, 35–70<inline-formula><mml:math id="M458" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
         <oasis:entry colname="col4">–</oasis:entry>
         <oasis:entry colname="col5">–</oasis:entry>
         <oasis:entry colname="col6">0.13</oasis:entry>
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">in <xref ref-type="bibr" rid="bib1.bibx21" id="text.99"/></oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
         <oasis:entry colname="col7"/>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p id="d1e6497"><inline-formula><mml:math id="M439" display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> This estimate is based on summer (JJA) estimates.</p></table-wrap-foot></table-wrap>

</sec>
</sec>
<sec id="Ch1.S6">
  <label>6</label><?xmltex \opttitle{Emission scaling impacts on surface {$\protect\chem{NO_{2}}$} and {$\protect\chem{O_{3}}$}}?><title>Emission scaling impacts on surface <inline-formula><mml:math id="M459" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M460" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></title>
<sec id="Ch1.S6.SS1">
  <label>6.1</label><title>Nitrogen dioxide</title>
      <p id="d1e7031">Table <xref ref-type="table" rid="Ch1.T1"/> summarizes the model performance of our bottom-up and top-down WRF-Chem simulations against a large number of AirBase <inline-formula><mml:math id="M461" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations throughout Europe in July 2015. The simulation with top-down emissions improves upon the a priori run in all metrics. Most notably, the model index of agreement (<inline-formula><mml:math id="M462" display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula>) improves by 0.10 (14 %). The modified model setup still slightly underestimates the monthly averaged observed <inline-formula><mml:math id="M463" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations, as indicated by a slope of 0.89. However, the low bias in WRF-Chem surface <inline-formula><mml:math id="M464" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations with respect to AirBase improves from <inline-formula><mml:math id="M465" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.5</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M466" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M467" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M468" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><?xmltex \currentcnt{8}?><label>Figure 8</label><caption><p id="d1e7119">Scatter plots of monthly averaged simulated concentrations of <bold>(a)</bold> <inline-formula><mml:math id="M469" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <bold>(b)</bold> <inline-formula><mml:math id="M470" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> against AirBase observations. Panel <bold>(a)</bold> shows monthly averages for 00:00–23:00 UTC, while panel <bold>(b)</bold> is sampled at 12:00 UTC. The black solid lines represent the <inline-formula><mml:math id="M471" display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>:</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> line.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f08.png"/>

        </fig>

      <p id="d1e7175">Compared to the monthly average, we find little improvement in WRF-Chem's skill to predict surface <inline-formula><mml:math id="M472" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at 12:00 UTC. The model's low bias in <inline-formula><mml:math id="M473" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reduces from <inline-formula><mml:math id="M474" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3.0</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M475" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.6</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M476" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M477" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and the index of agreement improves by only 0.02 (4 %). This more modest improvement in performance can be understood from midday surface <inline-formula><mml:math id="M478" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations being more strongly driven by photochemical removal processes and boundary layer development than the 24 h mean <inline-formula><mml:math id="M479" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> levels, which are more sensitive to <inline-formula><mml:math id="M480" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions due to strongly reduced mixing and photochemistry at night. Figure <xref ref-type="fig" rid="Ch1.F8"/> displays WRF-Chem monthly 24 h mean <inline-formula><mml:math id="M481" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations against AirBase observations for the bottom-up (black) and top-down (red) simulations. The model orthogonal distance regression (ODR) slope improves considerably, while the explained variance of the model improves slightly to 0.46.</p>
      <p id="d1e7288">Figure <xref ref-type="fig" rid="Ch1.F9"/> shows the relative biases between WRF-Chem and observed <inline-formula><mml:math id="M482" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> as a function of (binned) bottom-up anthropogenic NO emission strength. Both the WRF-Chem simulations with bottom-up emissions (Fig. <xref ref-type="fig" rid="Ch1.F9"/>a) as well as the simulation with top-down emissions (Fig. <xref ref-type="fig" rid="Ch1.F9"/>b) show a low bias against OMI and AirBase for regions with low emissions and a positive relative bias in regions with stronger emissions. The relative bias is however considerably reduced in the simulation with top-down <inline-formula><mml:math id="M483" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, both at the surface and in the column. However, WRF-Chem still displays a stronger relative bias compared to AirBase than compared to OMI. This feature can likely be attributed to a difference in spatial scales between the <inline-formula><mml:math id="M484" display="inline"><mml:mrow><mml:mn mathvariant="normal">20</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M485" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> resolution model and the footprint area of local AirBase measurements, which can be easily influenced by a nearby <inline-formula><mml:math id="M486" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> source that is less<?pagebreak page11831?> well captured in the model, due to instantaneous mixing over a larger volume. Another potential explanation for lower relative bias of WRF-Chem compared to AirBase than compared to OMI is interference of in situ measurements with molybdenum converters (see Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/>). This is in line with our previous finding that the slope of the top-down <inline-formula><mml:math id="M487" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column regression fit approaches 1, while the slope of the fit for in situ <inline-formula><mml:math id="M488" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations is still below 1. We also note that the spread in the relative bias compared to AirBase increased for the top-down simulation, with more positive relative bias values for all bins. Nonetheless, the results shown in Fig. <xref ref-type="fig" rid="Ch1.F9"/> provide confidence regarding application of the model as a tool to reconcile local-scale bottom-up emissions and concentrations with larger-scale remote-sensing-based <inline-formula><mml:math id="M489" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measurements.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><?xmltex \currentcnt{9}?><label>Figure 9</label><caption><p id="d1e7392">Relative bias <inline-formula><mml:math id="M490" display="inline"><mml:mrow><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">RB</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi mathvariant="normal">model</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="normal">observations</mml:mi></mml:mrow><mml:mi mathvariant="normal">observations</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> of WRF-Chem against land-based OMI <inline-formula><mml:math id="M491" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vertical column densities (box plots) and AirBase in situ <inline-formula><mml:math id="M492" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measurements (green scatter), binned by bottom-up anthropogenic NO emission strength, for the bottom-up <bold>(a)</bold> and top-down <bold>(b)</bold> WRF-Chem simulations. Green diamonds indicate the median WRF-Chem RB against AirBase observations for pixels within every emissions bin.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f09.png"/>

        </fig>

</sec>
<sec id="Ch1.S6.SS2">
  <label>6.2</label><title>Ozone</title>
      <p id="d1e7460">Next, we address our main question whether the improved simulation of <inline-formula><mml:math id="M493" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> leads to better model performance for surface ozone simulations. We find that WRF-Chem with top-down emissions improves upon the bottom-up simulation for both the 24 h mean, as well as the 12:00 UTC and MDA8 ozone metrics. The model index of agreement improves by 0.08–0.11 (13 %–17 %; Table <xref ref-type="table" rid="Ch1.T1"/>). However, the top-down model still simulates too-low surface <inline-formula><mml:math id="M494" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, especially over southern, eastern and central Europe, where observed surface <inline-formula><mml:math id="M495" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> exceeds 80 <inline-formula><mml:math id="M496" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M497" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at 12:00 UTC (see Fig. <xref ref-type="fig" rid="Ch1.F11"/>).</p>
      <p id="d1e7521">A comparison between monthly averaged midday <inline-formula><mml:math id="M498" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations from the bottom-up and top-down simulations (Fig. <xref ref-type="fig" rid="Ch1.F11"/>a and b, respectively) shows that ozone increases across the model domain. This particularly improves the WRF-Chem–AirBase agreement in large parts of western and central Europe. The simulated ozone values in northern Italy remain underestimated.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><label>Figure 10</label><caption><p id="d1e7539">July 2015 monthly median diurnal ozone concentrations for six representative regions in Europe, as simulated by WRF-Chem with bottom-up <inline-formula><mml:math id="M499" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions (green line) and top-down <inline-formula><mml:math id="M500" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions (red line), and as observed at AirBase stations in these regions. Shaded areas and whiskers indicate the interquartile range. Results represent the median over all model–observation comparisons per region. The sample size for the comparison is displayed on the top right of each subplot.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f10.png"/>

        </fig>

      <?pagebreak page11832?><p id="d1e7571">Surface ozone concentrations display a strong increase due to the use of top-down <inline-formula><mml:math id="M501" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions (Fig. <xref ref-type="fig" rid="Ch1.F11"/>). The areas where ozone concentrations increase by <inline-formula><mml:math id="M502" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M503" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M504" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> largely coincide with regions where top-down <inline-formula><mml:math id="M505" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions are much higher than the bottom-up emissions (Fig. <xref ref-type="fig" rid="Ch1.F5"/>c), such as in northern Spain, southern Germany, southern Poland, Croatia, Serbia, western Greece and southern Romania. There are also strong simulated ozone increases in central France and over the Adriatic Sea. These regions are all characterized as (rural) background areas, where ozone formation is strongly sensitive to the increases introduced in the <inline-formula><mml:math id="M506" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions for the relatively low bottom-up anthropogenic and soil emissions. We find decreases in ozone around the main shipping lanes, where the higher <inline-formula><mml:math id="M507" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions further enhance ozone titration. The enhanced titration also reduced simulated surface ozone around urban regions such as Barcelona, Rome and Paris. The increases in surface <inline-formula><mml:math id="M508" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in the BeNeLux region and western Germany slightly increase simulated midday surface ozone. Ozone production is less sensitive to <inline-formula><mml:math id="M509" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in these high <inline-formula><mml:math id="M510" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-emitting regions compared to the unpolluted background <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx60 bib1.bibx44" id="paren.100"/>.</p>
      <p id="d1e7690">Figure <xref ref-type="fig" rid="Ch1.F8"/> shows that <inline-formula><mml:math id="M511" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> simulations with the higher top-down <inline-formula><mml:math id="M512" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions lead to a somewhat better match between modeled and observed surface <inline-formula><mml:math id="M513" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, with an improvement in spatial correlation coefficient from 0.43 to 0.57, and an increase in slope from 0.33 to 0.41. Overall, the model low bias has reduced from <inline-formula><mml:math id="M514" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M515" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M516" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M517" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which indicates that the use of OMI <inline-formula><mml:math id="M518" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> VCD data to constrain WRF-Chem surface <inline-formula><mml:math id="M519" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions results in a considerable improvement regarding simulation of surface layer <inline-formula><mml:math id="M520" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><?xmltex \currentcnt{11}?><label>Figure 11</label><caption><p id="d1e7804">Monthly averaged 12:00 UTC surface <inline-formula><mml:math id="M521" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration with bottom-up (bu, panel <bold>a</bold>) and top-down (td, panel <bold>b</bold>) <inline-formula><mml:math id="M522" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions. Panel <bold>(c)</bold> shows the difference between the two monthly averages (td–bu).</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/19/11821/2019/acp-19-11821-2019-f11.png"/>

        </fig>

      <?pagebreak page11833?><p id="d1e7844">We additionally analyzed changes in the temporal evolution of ozone concentrations resulting from <inline-formula><mml:math id="M523" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission changes (Fig. <xref ref-type="fig" rid="Ch1.F10"/>). Daytime median <inline-formula><mml:math id="M524" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations are better captured in the Po Valley, central Spain and Poland. The <inline-formula><mml:math id="M525" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission changes lead to a model overestimation of surface <inline-formula><mml:math id="M526" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations for central France and south Germany, while concentrations change only slightly in the BeNeLux and Ruhr areas. In those regions, the mean bias error increases, while the hourly correlation coefficient and RMSE values improve for all regions (Table S4 of the Supplement). In all areas, changes in <inline-formula><mml:math id="M527" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions led to increased ozone concentrations particularly during daytime. Enhancements in simulated nighttime concentrations are only observed in central Spain. In other areas, nighttime <inline-formula><mml:math id="M528" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations are overestimated in both simulations. Peak daytime <inline-formula><mml:math id="M529" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations are better captured in all areas, as evidenced by the increase of the 75th percentile of simulated <inline-formula><mml:math id="M530" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations with top-down emissions. However, peak <inline-formula><mml:math id="M531" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations remain underestimated in the Po Valley, central Spain and southern Germany. Additionally, nighttime <inline-formula><mml:math id="M532" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration overestimations remain, likely due to issues related to model resolution and vertical mixing. Overall, the <inline-formula><mml:math id="M533" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission changes most effectively increase <inline-formula><mml:math id="M534" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations during periods with elevated ozone (Fig. S3 of the Supplement), which coincide with high solar radiation and temperatures and thus have a strongly <inline-formula><mml:math id="M535" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-dependent <inline-formula><mml:math id="M536" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> formation.</p>
</sec>
</sec>
<sec id="Ch1.S7">
  <label>7</label><title>Discussion</title>
      <p id="d1e8014">In this study, we demonstrate the added value of deriving satellite-based <inline-formula><mml:math id="M537" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in (regional) air pollution models for simulations of summertime ozone, focusing on July 2015 over Europe. We use a modified version of the mass balance approach introduced by <xref ref-type="bibr" rid="bib1.bibx62" id="text.101"/>, with further improvements by <xref ref-type="bibr" rid="bib1.bibx51" id="text.102"/> and <xref ref-type="bibr" rid="bib1.bibx94" id="text.103"/>. Although many studies report differences in simulated (surface) ozone concentrations after applying this mass balance approach <xref ref-type="bibr" rid="bib1.bibx31" id="paren.104"><named-content content-type="pre">e.g.,</named-content></xref>, we are aware of only one other study that used observations to validate subsequent ozone changes. <xref ref-type="bibr" rid="bib1.bibx92" id="text.105"/> used TES <inline-formula><mml:math id="M538" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations in the global chemistry model TM5 in a study on transcontinental transport of Asian air pollution and found an improved model–satellite agreement in lower-tropospheric ozone. However, their approach did not allow for an evaluation of model performance closer to the surface.</p>
      <p id="d1e8057">The mass balance approach that we used to derive observation-constrained European <inline-formula><mml:math id="M539" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions has several important advantages over more formal inversion methods that are applied in the literature <xref ref-type="bibr" rid="bib1.bibx64 bib1.bibx65" id="paren.106"><named-content content-type="pre">e.g.,</named-content></xref>. The method is highly traceable due to the simple calculation of scaling parameters from model output for a baseline and perturbation simulation, and column <inline-formula><mml:math id="M540" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measurements. However, the linearization (see Sect. <xref ref-type="sec" rid="Ch1.S3"/>) oversimplifies the non-linearity of the <inline-formula><mml:math id="M541" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M542" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> chemistry, which means that the model–satellite discrepancy is not resolved completely after one iteration. Additionally, the approach is only applicable on a pixel basis when the <inline-formula><mml:math id="M543" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> lifetime is sufficiently short to discard the contribution of transport from adjacent model <inline-formula><mml:math id="M544" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns. The model–satellite difference for a simulation we performed for March 2015 (not shown) shows less spatial heterogeneity over regions with a diffuse spatial distribution of <inline-formula><mml:math id="M545" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> sources (e.g., Germany). These shortcomings can be resolved by averaging the signal over multiple grid cells or by applying more formal inversion methods.</p>
      <?pagebreak page11834?><p id="d1e8145">Our results demonstrate that surface <inline-formula><mml:math id="M546" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in our WRF-Chem configuration are increased substantially after applying an emission scaling approach. In a first-order budget calculation, we derive that 43 %–69 % of this total increase can be attributed to soil <inline-formula><mml:math id="M547" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. This is diagnosed from the notably higher relative increase in emissions in regions with moderate anthropogenic emissions compared to regions with low and high anthropogenic emissions. We therefore conclude that the contribution of soil <inline-formula><mml:math id="M548" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to total surface emissions is likely underestimated in our model setup. Additionally, our top-down soil <inline-formula><mml:math id="M549" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission estimate, derived with a budget calculation, agrees well with previous estimates for European summer (Table <xref ref-type="table" rid="Ch1.T2"/>). Our findings are in line with a previous study <xref ref-type="bibr" rid="bib1.bibx66" id="paren.107"/> that, using WRF-Chem with MEGAN soil <inline-formula><mml:math id="M550" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, found a strong underestimation of <inline-formula><mml:math id="M551" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in a high-temperature agricultural region.</p>
      <p id="d1e8220">Several studies previously investigated the relation between soil <inline-formula><mml:math id="M552" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions and <inline-formula><mml:math id="M553" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> formation. For example, one study estimated that European soil <inline-formula><mml:math id="M554" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions contribute 4 ppb to the daily maximum concentration <xref ref-type="bibr" rid="bib1.bibx85" id="paren.108"/>. A sensitivity study by <xref ref-type="bibr" rid="bib1.bibx56" id="text.109"/> indicates that a strong upscaling of soil <inline-formula><mml:math id="M555" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions by a factor of 5 indeed leads to a better representation of the peak ozone concentration. It has further been shown that an improved process-based representation of soil <inline-formula><mml:math id="M556" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions leads to MDA8 <inline-formula><mml:math id="M557" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> changes by up to 6 ppb <xref ref-type="bibr" rid="bib1.bibx74" id="paren.110"/> and a reduced mean bias for ozone concentrations, particularly in agricultural areas <xref ref-type="bibr" rid="bib1.bibx75" id="paren.111"/>. Together, these findings provide support for the hypothesis that underestimated soil <inline-formula><mml:math id="M558" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions, in particular those from agricultural areas, contribute to underestimated peak ozone concentrations.</p>
      <p id="d1e8314">The comparison against in situ <inline-formula><mml:math id="M559" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations from the AirBase network may be hindered by interference of reactive N species for measurements with molybdenum converters. The type of converter is not reported in the database. Literature-reported estimates of measurement overestimations due to this interference are 22 % <xref ref-type="bibr" rid="bib1.bibx24" id="paren.112"/> and 5 %–18 % <xref ref-type="bibr" rid="bib1.bibx10" id="paren.113"/> at urban sites and 20 %–42 % at a rural site <xref ref-type="bibr" rid="bib1.bibx83" id="paren.114"/>. A correction factor can be applied to obtain corrected <inline-formula><mml:math id="M560" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measurements from observations using a molybdenum converter, which is on average 0.4–0.6 in summer, but with a large spread (0.2–0.8) <xref ref-type="bibr" rid="bib1.bibx49 bib1.bibx50" id="paren.115"/>. The strongest corrections of molybdenum-based in situ <inline-formula><mml:math id="M561" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> measurements are needed in remote environments, where <inline-formula><mml:math id="M562" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is a relatively smaller component of the total reactive nitrogen budget compared to areas closer to <inline-formula><mml:math id="M563" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> sources <xref ref-type="bibr" rid="bib1.bibx49" id="paren.116"/>. We hypothesize that this can partially explain the remaining model–observation mismatch for <inline-formula><mml:math id="M564" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> after the use of top-down emissions.</p>
      <p id="d1e8399">Despite the demonstrated improvement in ozone simulations, our simulation with OMI-derived top-down  <inline-formula><mml:math id="M565" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions still misrepresents the high tail of the ozone distribution. We believe that there is a potential explanatory role for local to regional meteorological processes. The representation of several mesoscale phenomena requires a higher model resolution than <inline-formula><mml:math id="M566" display="inline"><mml:mrow><mml:mn mathvariant="normal">20</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M567" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>. For example, <xref ref-type="bibr" rid="bib1.bibx63" id="text.117"/> demonstrated that local recirculation of residual air masses from higher aloft, containing elevated <inline-formula><mml:math id="M568" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> transported aloft during previous days, can be entrained in the boundary layer and contribute substantially to air pollution episodes in southern Europe. This is supported by an analysis of measured ozone (precursors) in northeast Spain by <xref ref-type="bibr" rid="bib1.bibx73" id="text.118"/>, where this mesoscale circulation pattern was found to contribute to concentrations that exceed the information threshold value set by the European Union (180 <inline-formula><mml:math id="M569" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M570" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>), alongside contributions from locally emitted <inline-formula><mml:math id="M571" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and biogenic VOCs.</p>
      <p id="d1e8483">Simulations of surface ozone in AQ models are also impacted by the choice of chemical parameterization. Recently, several studies have investigated the influence of the chemical mechanism on simulated <inline-formula><mml:math id="M572" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M573" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations. Regarding ozone chemistry, chemical mechanisms differ predominantly in two aspects: (1) the grouping of VOC species in species categories (“lumping”) according to their chemical structure or number of C atoms and (2) the inorganic rate coefficients involved in the catalytic cycling of <inline-formula><mml:math id="M574" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M575" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M576" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Especially the latter aspect has a strong influence on simulated <inline-formula><mml:math id="M577" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations and can therefore influence the derivation of top-down emission estimates using satellite observations <xref ref-type="bibr" rid="bib1.bibx82" id="paren.119"/>. <xref ref-type="bibr" rid="bib1.bibx19" id="text.120"/> investigated the maximum ozone formation potential in different chemical mechanisms and found that mechanisms with lumped VOC categories led to lower ozone mixing ratios compared to a mechanism with a near-explicit treatment of VOCs. <xref ref-type="bibr" rid="bib1.bibx47" id="text.121"/> found small differences in inorganic rate constants among mechanisms and thus concluded that VOC representation was the dominating source of uncertainty among mechanisms. However, <xref ref-type="bibr" rid="bib1.bibx60" id="text.122"/> performed a WRF-Chem sensitivity study where MOZART inorganic rate constants were applied within RADM2, leading to mean <inline-formula><mml:math id="M578" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration differences of 8 <inline-formula><mml:math id="M579" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M580" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> between those mechanisms.</p>
      <p id="d1e8597">In order to test the importance of inorganic <inline-formula><mml:math id="M581" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M582" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math id="M583" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> reaction rates for ozone formation, we implemented inorganic rate constants from three different mechanisms (CBM-Z, RADM2 and MOZART) in a mixed layer model with simplified chemistry <xref ref-type="bibr" rid="bib1.bibx43" id="paren.123"/>. Further details are given in Sect. S5 of the Supplement. Our analysis shows that varying the temperature-dependent rate constant of <inline-formula><mml:math id="M584" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HNO</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> formation (<inline-formula><mml:math id="M585" display="inline"><mml:mrow><mml:msup><mml:mi>k</mml:mi><mml:mrow><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>+</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) can lead to a spread of 2 ppb for end-of-afternoon ozone values on a typical summer day in a polluted boundary layer. CBM-Z uses the lowest <inline-formula><mml:math id="M586" display="inline"><mml:mrow><mml:msup><mml:mi>k</mml:mi><mml:mrow><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>+</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> among the considered mechanisms and thus leads to a higher <inline-formula><mml:math id="M587" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lifetime and more <inline-formula><mml:math id="M588" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> formation than in other mechanisms. Therefore, we conclude that modification of inorganic reaction rate constants has a modest effect on simulated <inline-formula><mml:math id="M589" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> but is not likely to lead to increases in simulated <inline-formula><mml:math id="M590" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in our WRF-Chem configuration. Nevertheless, the model<?pagebreak page11835?> representation of ozone chemistry should be carefully considered in <inline-formula><mml:math id="M591" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M592" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> air quality studies, besides the representation of <inline-formula><mml:math id="M593" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions.</p>
      <p id="d1e8768">Several studies have considered the resolution dependence of air quality simulations. This is especially relevant for <inline-formula><mml:math id="M594" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, since <inline-formula><mml:math id="M595" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions display strong variation on the <inline-formula><mml:math id="M596" display="inline"><mml:mrow><mml:mn mathvariant="normal">20</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M597" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> scale applied in this study. Increasing model resolution leads to better representation of these local gradients and therefore improves simulations of <inline-formula><mml:math id="M598" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations <xref ref-type="bibr" rid="bib1.bibx78" id="paren.124"/>. <xref ref-type="bibr" rid="bib1.bibx89" id="text.125"/> found that an accurate representation of midday <inline-formula><mml:math id="M599" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns from highly localized sources requires a high model resolution, but regions with more diffuse sources can be simulated at a coarser resolution of <inline-formula><mml:math id="M600" display="inline"><mml:mrow><mml:mo>±</mml:mo><mml:mn mathvariant="normal">10</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M601" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>. Although ozone production regimes do not strongly depend on the model resolution in regional models, high-resolution models perform better at simulating local <inline-formula><mml:math id="M602" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> titration in freshly emitted NO plumes <xref ref-type="bibr" rid="bib1.bibx20" id="paren.126"/>.</p>
      <p id="d1e8881">Besides the representation of meteorological processes, there is an additional uncertainty related to surface–atmosphere exchange of pollutants. Dry deposition constitutes 17 % of the tropospheric sink of ozone and is the second most important removal process after chemical removal <xref ref-type="bibr" rid="bib1.bibx37" id="paren.127"/>. Several studies have recently investigated the role of meteorological drivers that determine ozone removal at the surface. However, these meteorological controls are oversimplified in deposition parameterizations. The vapor pressure deficit strongly controls stomatal uptake of ozone, thereby affecting surface ozone levels in spring to summer in the United States <xref ref-type="bibr" rid="bib1.bibx45" id="paren.128"/>. Analysis of 10-year <inline-formula><mml:math id="M603" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> flux observations in the northeastern United States revealed that the removal of ozone by the land surface exhibits a strong interannual variability, which is not captured in dry deposition parameterizations <xref ref-type="bibr" rid="bib1.bibx18" id="paren.129"/>. Lastly, the role of soil moisture has been proposed as a regulator of surface ozone uptake <xref ref-type="bibr" rid="bib1.bibx86" id="paren.130"/> and is often neglected in parameterizations of dry deposition, even though a recent study found that it can significantly reduce simulated ozone uptake <xref ref-type="bibr" rid="bib1.bibx3" id="paren.131"/>. Improving the biophysical representation of the dry deposition process in WRF-Chem will be one of our foci in the future.</p>
      <p id="d1e8912">Future studies that apply satellite-based constraints on surface <inline-formula><mml:math id="M604" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions can benefit from observations from the recently launched TROPOspheric Monitoring Instrument (TROPOMI) instrument <xref ref-type="bibr" rid="bib1.bibx90" id="paren.132"/>, which delivers <inline-formula><mml:math id="M605" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column data at an unprecedented resolution of <inline-formula><mml:math id="M606" display="inline"><mml:mrow><mml:mn mathvariant="normal">7</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn></mml:mrow></mml:math></inline-formula> km<inline-formula><mml:math id="M607" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>. This has the potential to lead to important improvements in satellite-constrained <inline-formula><mml:math id="M608" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions. Recent work <xref ref-type="bibr" rid="bib1.bibx58" id="paren.133"/> has applied TROPOMI observations in a column model study to derive emissions from Paris. The resolution of the instrument additionally enables the focus on more local areas with one dominating source such as soils in agricultural or bare-soil regions.</p>
</sec>
<sec id="Ch1.S8" sec-type="conclusions">
  <label>8</label><title>Conclusions</title>
      <p id="d1e8984">We performed a WRF-Chem simulation of <inline-formula><mml:math id="M609" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and ozone over Europe for July 2015 and assessed its performance with AirBase in situ observations and OMI <inline-formula><mml:math id="M610" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column measurements. We find that WRF-Chem underestimates high surface ozone concentrations in central and southern Europe, and overestimates lower ozone concentrations in northern Europe. The model also underestimates the spread. The monthly averaged mean bias error (MBE) is relatively small (<inline-formula><mml:math id="M611" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.4</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M612" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M613" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 10 %). WRF-Chem underestimates daytime increases in ozone concentrations, as evidenced by substantial negative MBE values for the midday (12:00 UTC) <inline-formula><mml:math id="M614" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentration and MDA8 <inline-formula><mml:math id="M615" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M616" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15.1</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M617" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">14.2</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M618" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M619" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively). We relate the low bias in surface ozone to biases in ozone precursor concentrations. Of particular relevance are nitrogen oxides, which drive ozone production in much of <inline-formula><mml:math id="M620" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>-limited summertime Europe.</p>
      <p id="d1e9114">For <inline-formula><mml:math id="M621" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, we find that WRF-Chem underestimates surface and column <inline-formula><mml:math id="M622" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> values for most of the domain, with the exception of some high-emission regions. With respect to AirBase, WRF-Chem monthly averaged surface <inline-formula><mml:math id="M623" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is biased low by <inline-formula><mml:math id="M624" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M625" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M626" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M627" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">73</mml:mn></mml:mrow></mml:math></inline-formula> %). The spatial distribution of WRF-Chem column <inline-formula><mml:math id="M628" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> agrees well with OMI (<inline-formula><mml:math id="M629" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.68</mml:mn></mml:mrow></mml:math></inline-formula>) and a mean underestimation of <inline-formula><mml:math id="M630" display="inline"><mml:mrow><mml:mn mathvariant="normal">0.3</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">15</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molec. cm<inline-formula><mml:math id="M631" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (<inline-formula><mml:math id="M632" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">23</mml:mn></mml:mrow></mml:math></inline-formula> %). We attribute the low bias in WRF-Chem <inline-formula><mml:math id="M633" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations to underestimations in surface <inline-formula><mml:math id="M634" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions in WRF-Chem. We subsequently derive optimized <inline-formula><mml:math id="M635" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions based on the WRF-Chem/OMI relative difference using a mass balance approach. Overall emissions increase from 0.32 to 0.50 Tg N, an increase of 0.18 Tg N (<inline-formula><mml:math id="M636" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">56</mml:mn></mml:mrow></mml:math></inline-formula> %), for July 2015. The updates indicate that <inline-formula><mml:math id="M637" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions should be scaled up across the domain. The relative increase in emissions is largest for regions with moderate emission strength (up to 50 Mg N month<inline-formula><mml:math id="M638" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cell<inline-formula><mml:math id="M639" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and coincides with regions where agricultural soil <inline-formula><mml:math id="M640" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions are substantial. Our optimized soil <inline-formula><mml:math id="M641" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions amount to 0.1 Tg N, in much better agreement with values from the literature.</p>
      <p id="d1e9356">A WRF-Chem simulation with optimized <inline-formula><mml:math id="M642" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions removes the model’s systematic bias with respect to OMI <inline-formula><mml:math id="M643" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and leads to an improved spatial agreement (slope <inline-formula><mml:math id="M644" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.98, <inline-formula><mml:math id="M645" display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.84</mml:mn></mml:mrow></mml:math></inline-formula>). An evaluation against AirBase <inline-formula><mml:math id="M646" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> reveals that the top-down simulation improves particularly in the monthly average, where the systematic mismatch is reduced (slope <inline-formula><mml:math id="M647" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.89 instead of 0.73) and the mean bias is reduced by 50 %. For ozone, the model skill improves particularly for midday and MDA8 <inline-formula><mml:math id="M648" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, when local ozone formation occurs and the sensitivity of ozone formation to <inline-formula><mml:math id="M649" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> concentrations is highest. On average, surface <inline-formula><mml:math id="M650" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations increase by 6 <inline-formula><mml:math id="M651" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi></mml:mrow></mml:math></inline-formula>g m<inline-formula><mml:math id="M652" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (6 %). Still, peak (midday) ozone values are underestimated after <inline-formula><mml:math id="M653" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission optimization.</p>
      <?pagebreak page11836?><p id="d1e9487">Overall, our findings demonstrate that air quality model simulations combined with in situ and remote sensing observations can be used to infer missing sources of <inline-formula><mml:math id="M654" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at the surface. By optimizing <inline-formula><mml:math id="M655" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions with satellite observations, substantial improvements in simulated ozone can be achieved. Our work shows that this helps to reduce the persistent biases in <inline-formula><mml:math id="M656" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> that most air quality models are suffering from. Projected decreasing trends in anthropogenic <inline-formula><mml:math id="M657" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions will mean that the contribution of soils to total European <inline-formula><mml:math id="M658" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emissions will likely increase in the future and thus deserves careful attention in (European) air quality assessments, along with detailed assessments of emissions of volatile organic compounds and wildfires, boundary layer mixing and chemistry.</p>
</sec>

      
      </body>
    <back><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d1e9549">WRF-Chem output and recalculated OMI <inline-formula><mml:math id="M659" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns are available upon request, as well as scripts to recalculate the tropospheric AMF and the resulting changes in satellite <inline-formula><mml:math id="M660" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> columns.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e9574">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/acp-19-11821-2019-supplement" xlink:title="pdf">https://doi.org/10.5194/acp-19-11821-2019-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e9583">AJV, KFB and LNG designed the experiment. AJV performed the model simulations and analysis, with support from all co-authors. AJV wrote the manuscript, with contributions from all co-authors.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e9590">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e9596">The authors acknowledge the free availability of the WRF-Chem model (<uri>https://www2.acom.ucar.edu/wrf-chem</uri>, last access: 5 February 2019), in situ data from AirBase (<uri>http://discomap.eea.europa.eu/map/fme/AirQualityExport.htm</uri>, last access: 14 March 2019) and satellite <inline-formula><mml:math id="M661" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> column observations from the OMI instrument (<uri>http://www.qa4ecv.eu</uri>, last access: 12 March 2019). We additionally thank John Paton for his help with downloading AirBase in situ measurements. Lastly, we thank three anonymous referees for their useful and constructive comments, which helped to improve this work.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e9621">This research has been supported by the Dutch Research Council (NWO) and the Netherlands Space Office (NSO) under the User Support Programme Space Research (grant no. ALW-GO 16/17)</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e9627">This paper was edited by Pedro Jimenez-Guerrero and reviewed by three anonymous referees.</p>
  </notes><ref-list>
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    <!--<article-title-html>European NO<sub><i>x</i></sub> emissions in WRF-Chem derived from OMI: impacts on summertime surface ozone</article-title-html>
<abstract-html><p>Ozone (O<sub>3</sub>) is a secondary air pollutant that negatively affects human and ecosystem health. Ozone simulations with regional air quality models suffer from unexplained biases over Europe, and uncertainties in the emissions of ozone precursor group nitrogen oxides (NO<sub><i>x</i></sub> = NO + NO<sub>2</sub>) contribute to these biases. The goal of this study is to use NO<sub>2</sub> column observations from the Ozone Monitoring Instrument (OMI) satellite sensor to infer top-down NO<sub><i>x</i></sub> emissions in the regional Weather Research and Forecasting model with coupled chemistry (WRF-Chem) and to evaluate the impact on simulated surface O<sub>3</sub> with in situ observations. We first perform a simulation for July 2015 over Europe and evaluate its performance against in situ observations from the AirBase network. The spatial distribution of mean ozone concentrations is reproduced satisfactorily. However, the simulated maximum daily 8&thinsp;h ozone concentration (MDA8 O<sub>3</sub>) is underestimated (mean bias error  of −14.2&thinsp;µg&thinsp;m<sup>−3</sup>), and its spread is too low. We subsequently derive satellite-constrained surface NO<sub><i>x</i></sub> emissions using a mass balance approach based on the relative difference between OMI and WRF-Chem NO<sub>2</sub> columns. The method accounts for feedbacks through OH, NO<sub>2</sub>'s dominant daytime oxidant. Our optimized European NO<sub><i>x</i></sub> emissions amount to 0.50&thinsp;Tg&thinsp;N (for July 2015), which is 0.18&thinsp;Tg&thinsp;N higher than the bottom-up emissions (which lacked agricultural soil NO<sub><i>x</i></sub> emissions). Much of the increases occur across Europe, in regions where agricultural soil NO<sub><i>x</i></sub> emissions dominate. Our best estimate of soil NO<sub><i>x</i></sub> emissions in July 2015 is 0.1&thinsp;Tg&thinsp;N, much higher than the bottom-up 0.02&thinsp;Tg&thinsp;N natural soil NO<sub><i>x</i></sub> emissions from the Model of Emissions of Gases and Aerosols from Nature (MEGAN). A simulation with satellite-updated NO<sub><i>x</i></sub> emissions reduces the systematic bias between WRF-Chem and OMI NO<sub>2</sub> (slope&thinsp; = 0.98, <i>r</i><sup>2</sup> = 0.84) and reduces the low bias against independent surface NO<sub>2</sub> measurements by 1.1&thinsp;µg&thinsp;m<sup>−3</sup> (−56&thinsp;%). Following these NO<sub><i>x</i></sub> emission changes, daytime ozone is strongly affected, since NO<sub><i>x</i></sub> emission changes particularly affect daytime ozone formation. Monthly averaged simulated daytime ozone increases by 6.0&thinsp;µg&thinsp;m<sup>−3</sup>, and increases of  &gt; 10&thinsp;µg&thinsp;m<sup>−3</sup> are seen in regions with large emission increases. With respect to the initial simulation, MDA8 O<sub>3</sub> has an improved spatial distribution, expressed by an increase in <i>r</i><sup>2</sup> from 0.40 to 0.53, and a decrease of the mean bias by 7.4&thinsp;µg&thinsp;m<sup>−3</sup> (48&thinsp;%). Overall, our results highlight the dependence of surface ozone on its precursor NO<sub><i>x</i></sub> and demonstrate that simulations of surface ozone benefit from constraining surface NO<sub><i>x</i></sub> emissions by satellite NO<sub>2</sub> column observations.</p></abstract-html>
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