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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-18-65-2018</article-id><title-group><article-title>Influence of temperature on the molecular composition of ions <?xmltex \hack{\break}?> and charged clusters during pure biogenic nucleation</article-title><alt-title>Influence of temperature on the molecular composition of ions and charged clusters</alt-title>
      </title-group><?xmltex \runningtitle{Influence of temperature on the molecular composition of ions and charged clusters}?><?xmltex \runningauthor{C.~Frege et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Frege</surname><given-names>Carla</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7833-8771</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Ortega</surname><given-names>Ismael K.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Rissanen</surname><given-names>Matti P.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-0463-8098</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Praplan</surname><given-names>Arnaud P.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9944-3084</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff4 aff5">
          <name><surname>Steiner</surname><given-names>Gerhard</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3008-1414</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Heinritzi</surname><given-names>Martin</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Ahonen</surname><given-names>Lauri</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2534-6898</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Amorim</surname><given-names>António</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4 aff18">
          <name><surname>Bernhammer</surname><given-names>Anne-Kathrin</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-0614-3649</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff3">
          <name><surname>Bianchi</surname><given-names>Federico</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2996-3604</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4 aff5 aff6">
          <name><surname>Brilke</surname><given-names>Sophia</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4 aff19">
          <name><surname>Breitenlechner</surname><given-names>Martin</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Dada</surname><given-names>Lubna</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1105-9043</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>Dias</surname><given-names>António</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff8">
          <name><surname>Duplissy</surname><given-names>Jonathan</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8819-0264</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff8 aff20">
          <name><surname>Ehrhart</surname><given-names>Sebastian</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-6517-5341</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>El-Haddad</surname><given-names>Imad</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2461-7238</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Fischer</surname><given-names>Lukas</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-3141-9088</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Fuchs</surname><given-names>Claudia</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Garmash</surname><given-names>Olga</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-9675-3271</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9">
          <name><surname>Gonin</surname><given-names>Marc</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4 aff18">
          <name><surname>Hansel</surname><given-names>Armin</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1062-2394</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Hoyle</surname><given-names>Christopher R.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1369-9143</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Jokinen</surname><given-names>Tuija</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1280-1396</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff17">
          <name><surname>Junninen</surname><given-names>Heikki</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6 aff8">
          <name><surname>Kirkby</surname><given-names>Jasper</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2341-9069</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Kürten</surname><given-names>Andreas</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff3">
          <name><surname>Lehtipalo</surname><given-names>Katrianne</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1660-2706</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4 aff6">
          <name><surname>Leiminger</surname><given-names>Markus</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3343-5425</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff16">
          <name><surname>Mauldin</surname><given-names>Roy Lee</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Molteni</surname><given-names>Ugo</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1623-1933</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff10">
          <name><surname>Nichman</surname><given-names>Leonid</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Petäjä</surname><given-names>Tuukka</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1881-9044</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Sarnela</surname><given-names>Nina</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1874-3235</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff14">
          <name><surname>Schobesberger</surname><given-names>Siegfried</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Simon</surname><given-names>Mario</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Sipilä</surname><given-names>Mikko</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Stolzenburg</surname><given-names>Dominik</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1014-1360</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff11">
          <name><surname>Tomé</surname><given-names>António</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9144-7120</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff8">
          <name><surname>Vogel</surname><given-names>Alexander L.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1293-6370</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Wagner</surname><given-names>Andrea C.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3159-9434</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Wagner</surname><given-names>Robert</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Xiao</surname><given-names>Mao</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Yan</surname><given-names>Chao</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-5735-9597</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff12 aff15">
          <name><surname>Ye</surname><given-names>Penglin</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-6954-4028</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Curtius</surname><given-names>Joachim</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3153-4630</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff12">
          <name><surname>Donahue</surname><given-names>Neil M.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3054-2364</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff13">
          <name><surname>Flagan</surname><given-names>Richard C.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Kulmala</surname><given-names>Markku</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3464-7825</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff14 aff15">
          <name><surname>Worsnop</surname><given-names>Douglas R.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Winkler</surname><given-names>Paul M.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Dommen</surname><given-names>Josef</given-names></name>
          <email>josef.dommen@psi.ch</email>
        <ext-link>https://orcid.org/0000-0002-0006-0009</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Baltensperger</surname><given-names>Urs</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-0079-8713</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Paul Scherrer Institute, Laboratory of Atmospheric Chemistry, 5232 Villigen, Switzerland</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>ONERA – The French Aerospace Lab, 91123 Palaiseau, France</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>University of Helsinki, Department of Physics, P.O. Box 64, University of Helsinki, 00014 Helsinki, Finland</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>University of Innsbruck, Institute of Ion Physics and Applied Physics, Technikerstraße 25, 6020 Innsbruck, Austria</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>University of Vienna, Faculty of Physics, Boltzmanngasse 5, 1090 Vienna, Austria</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>Institute for Atmospheric and Environmental Sciences, Goethe University Frankfurt, 60438 Frankfurt am Main, Germany</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>Universidade de Lisboa, Ed. C8, Campo Grande, 1749-016 Lisbon, Portugal</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>CERN, Geneva, Switzerland</institution>
        </aff>
        <aff id="aff9"><label>9</label><institution>Tofwerk AG, 3600 Thun, Switzerland</institution>
        </aff>
        <aff id="aff10"><label>10</label><institution>School of Earth and Environmental Sciences, University of Manchester, Manchester, M13 9PL, UK</institution>
        </aff>
        <aff id="aff11"><label>11</label><institution>IDL – Universidade da Beira Interior, Av. Marquês D'Avila e Bolama, 6201-001 Covilhã, Portugal</institution>
        </aff>
        <aff id="aff12"><label>12</label><institution>Center for Atmospheric Particle Studies, Carnegie Mellon University, Pittsburgh, Pennsylvania, 15213, USA</institution>
        </aff>
        <aff id="aff13"><label>13</label><institution>Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, 91125, USA</institution>
        </aff>
        <aff id="aff14"><label>14</label><institution>University of Eastern Finland, Department of Applied Physics, 70211 Kuopio, Finland</institution>
        </aff>
        <aff id="aff15"><label>15</label><institution>Aerodyne Research Inc., Billerica, Massachusetts, 01821, USA</institution>
        </aff>
        <aff id="aff16"><label>16</label><institution>Department of Atmospheric and Oceanic Sciences, University of Colorado, Boulder, Colorado, 80309-0311, USA</institution>
        </aff>
        <aff id="aff17"><label>17</label><institution>University of Tartu, Institute of Physics, 50090 Tartu, Estonia</institution>
        </aff>
        <aff id="aff18"><label>18</label><institution>Ionicon Analytik GmbH, Eduard-Bodem Gasse 3, 6020 Innsbruck, Austria</institution>
        </aff>
        <aff id="aff19"><label>a</label><institution>now at: Harvard University, School of Engineering and Applied Sciences, Cambridge, MA 02138, USA</institution>
        </aff>
        <aff id="aff20"><label>b</label><institution>now at: Max-Planck Institute of Chemistry, Atmospheric Chemistry Department, 55128 Mainz, Germany</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Josef Dommen (josef.dommen@psi.ch)</corresp></author-notes><pub-date><day>4</day><month>January</month><year>2018</year></pub-date>
      
      <volume>18</volume>
      <issue>1</issue>
      <fpage>65</fpage><lpage>79</lpage>
      <history>
        <date date-type="received"><day>5</day><month>May</month><year>2017</year></date>
           <date date-type="rev-request"><day>29</day><month>May</month><year>2017</year></date>
           <date date-type="rev-recd"><day>31</day><month>October</month><year>2017</year></date>
           <date date-type="accepted"><day>10</day><month>November</month><year>2017</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>
      <abstract>
    <p id="d1e692">It was recently shown by the CERN CLOUD experiment that biogenic highly
oxygenated molecules (HOMs) form particles under atmospheric conditions in
the absence of sulfuric acid, where ions enhance the nucleation rate by 1–2 orders of magnitude. The biogenic HOMs were produced from ozonolysis of
<inline-formula><mml:math id="M1" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene at 5 <inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. Here we extend this study to compare the
molecular composition of positive and negative HOM clusters measured with
atmospheric pressure interface time-of-flight mass spectrometers (APi-TOFs),
at three different temperatures (25, 5 and <inline-formula><mml:math id="M3" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M4" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C). Most negative HOM clusters include a
nitrate (NO<inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) ion, and the spectra are similar to those seen in the nighttime
boreal forest. On the other hand, most positive HOM clusters include an
ammonium (NH<inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) ion, and the spectra are characterized by mass bands
that differ in their molecular weight by <inline-formula><mml:math id="M7" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 C atoms,
corresponding to HOM dimers. At lower temperatures the average oxygen to
carbon (O : C) ratio of the HOM clusters decreases for both polarities,
reflecting an overall reduction of HOM formation with decreasing temperature.
This indicates a decrease in the rate of autoxidation with temperature due to
a rather high activation energy as has previously been determined by quantum
chemical calculations. Furthermore, at the lowest temperature
(<inline-formula><mml:math id="M8" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M9" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C),
the presence of C<inline-formula><mml:math id="M10" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula> clusters shows that HOM monomers start to
contribute to the nucleation of positive clusters. These experimental
findings are supported by quantum chemical calculations of the binding
energies of representative neutral and charged clusters.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<?pagebreak page66?><sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e791">Atmospheric aerosol particles directly affect climate by influencing the
transfer of radiant energy through the atmosphere (Boucher et al., 2013). In
addition, aerosol particles can indirectly affect climate, by serving as
cloud condensation nuclei (CCN) and ice nuclei (IN). They are of natural or
anthropogenic origin, and result from direct emissions (primary particles)
or from oxidation of gaseous precursors (secondary particles). Understanding
particle formation processes in the atmosphere is important since more than
half of the atmospheric aerosol particles may originate from nucleation
(Dunne et al., 2016; Merikanto et al., 2009).</p>
      <p id="d1e794">Due to its widespread presence and low saturation vapor pressure, sulfuric
acid is believed to be the main vapor responsible for new particle
formation (NPF) in the atmosphere. Indeed, particle nucleation is dependent on its
concentration, albeit with large variability (Kulmala et al., 2004).
The combination of sulfuric acid with ammonia and amines increases
nucleation rates due to a higher stability of the initial clusters (Almeida et
al., 2013; Kirkby et al., 2011; Kürten et al., 2016). However, these
clusters alone cannot explain the particle formation rates observed in the
atmosphere. Nucleation rates are greatly enhanced when oxidized organics are
present together with sulfuric acid, resulting in NPF rates that closely
match those observed in the atmosphere (Metzger et al., 2010;
Riccobono et al., 2014). An important characteristic of the organic
molecules participating in nucleation is their high oxygen content and
consequently low vapor pressure. The formation of these highly oxygenated
molecules (HOMs) has been described by Ehn et al. (2014),
who found that, following the well-known initial steps of
<inline-formula><mml:math id="M11" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene ozonolysis through a Criegee intermediate leading to the formation
of an RO<inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>⋅</mml:mo></mml:mrow></mml:math></inline-formula> radical, several repeated cycles of intramolecular
hydrogen abstractions and O<inline-formula><mml:math id="M13" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> additions produce progressively more
oxygenated RO<inline-formula><mml:math id="M14" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> radicals, a mechanism called autoxidation
(Crounse et al., 2013). The (extremely) low
volatility of the HOMs results in efficient NPF and growth, even in the
absence of sulfuric acid (Kirkby et al., 2016; Tröstl et al., 2016). The
chemical composition of HOMs during NPF has been identified from <inline-formula><mml:math id="M15" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene
and pinanediol oxidation by Praplan et al. (2015) and Schobesberger et al. (2013), respectively.</p>
      <p id="d1e841">Charge has also been shown to enhance nucleation (Kirkby et al., 2011). Ions are produced in
the atmosphere mainly by galactic cosmic rays and radon. The primary ions
are N<inline-formula><mml:math id="M16" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>, N<inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, O<inline-formula><mml:math id="M18" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>, O<inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, H<inline-formula><mml:math id="M20" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M21" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>, O<inline-formula><mml:math id="M22" display="inline"><mml:msup><mml:mi/><mml:mo>-</mml:mo></mml:msup></mml:math></inline-formula>
and O<inline-formula><mml:math id="M23" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (Shuman et al., 2015). These generally
form clusters with water (e.g., (H<inline-formula><mml:math id="M24" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O)H<inline-formula><mml:math id="M25" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>); after further
collisions the positive and negative charges are transferred to trace
species with highest and lowest proton affinities, respectively
(Ehn et al., 2010). Ions are expected to
promote NPF by increasing the cluster binding energy and reducing
evaporation rates (Hirsikko et al., 2011).
Recent laboratory experiments showed that ions increase the nucleation rates
of HOMs from the oxidation of <inline-formula><mml:math id="M27" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene by 1–2 orders of
magnitude compared to neutral conditions (Kirkby et al., 2016). This is due to two
effects, of which the first is more important: (1) an increase in cluster
binding energy, which decreases evaporation, and (2) an enhanced collision
probability, which increases the condensation of polar vapors on the charged
clusters (Lehtipalo et al., 2016; Nadykto, 2003).</p>
      <p id="d1e961">Temperature plays an important role in nucleation, resulting in strong
variations of NPF at different altitudes. Kürten et al. (2016) studied the effect of
temperature on nucleation for the sulfuric-acid–ammonia system, finding
that low temperatures decrease the needed concentration of H<inline-formula><mml:math id="M28" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>SO<inline-formula><mml:math id="M29" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>
to maintain a certain nucleation rate. Similar results have been found for
sulfuric-acid–water binary nucleation (Duplissy et al., 2016; Merikanto et al.,
2016), where temperatures below 0 <inline-formula><mml:math id="M30" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C were needed for NPF to occur at
atmospheric concentrations. Up to now, no studies have addressed the
temperature effect on NPF driven by HOMs from biogenic precursors such as <inline-formula><mml:math id="M31" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene.</p>
      <p id="d1e999">In this study we focus on the chemical characterization of the ions and the
influence of temperature on their chemical composition during organic
nucleation in the absence of sulfuric acid. The importance of such sulfuric-acid-free clusters for NPF has been shown in the laboratory (Kirkby et<?pagebreak page67?> al.,
2016; Tröstl et al., 2016) as well as in the field (Bianchi et al.,
2016). We present measurements of the NPF process from the detection of
primary ions (e.g., N<inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, O<inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, NO<inline-formula><mml:math id="M34" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>) to the formation
of clusters in the size range of small particles, all under atmospherically
relevant conditions. The experiments were conducted at three different
temperatures (<inline-formula><mml:math id="M35" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>25, 5 and 25 <inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) enabling the simulation of pure
biogenic NPF representative of different tropospheric conditions. This spans
the temperature range where NPF might occur in tropical or sub-tropical
latitudes (25 <inline-formula><mml:math id="M37" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C), high-latitude boreal regions (5 <inline-formula><mml:math id="M38" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C)
and the free troposphere (<inline-formula><mml:math id="M39" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C). For example, NPF events were
reported to occur in an Australian Eucalypt forest (Suni et
al., 2008) and at the boreal station in Hyytiälä (Kulmala et al., 2013). Nucleation by organic
vapors was also observed at a high mountain station (Bianchi et al, 2016).
High aerosol particle concentrations were measured in the upper troposphere
over the Amazon Basin and tentatively attributed to the oxidation of
biogenic volatile organic compounds (Andreae et al., 2017).</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>The CLOUD chamber</title>
      <p id="d1e1097">We conducted experiments at the CERN CLOUD chamber (Cosmics Leaving Outdoor
Droplets). With a volume of 26.1 m<inline-formula><mml:math id="M41" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>, the chamber is built of
electropolished stainless steel and equipped with a precisely controlled gas
system. The temperature inside the chamber is measured with a string of six
thermocouples (TC, type K), which were mounted horizontally between the
chamber wall and the center of the chamber at distances of 100, 170, 270,
400, 650 and 950 mm from the chamber wall (Hoyle
et al., 2016). The temperature is controlled accurately (with a precision of
<inline-formula><mml:math id="M42" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.1 <inline-formula><mml:math id="M43" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) at any tropospheric temperature between <inline-formula><mml:math id="M44" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>65 and
30 <inline-formula><mml:math id="M45" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (in addition, the temperature can be raised to 100 <inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C
for cleaning). The chamber enables atmospheric simulations under highly
stable experimental conditions with low particle wall loss and low
contamination levels (more details of the CLOUD chamber can be found in
Kirkby et al., 2011 and Duplissy et al., 2016). At
the beginning of the campaign the CLOUD chamber was cleaned by rinsing the
walls with ultra-pure water, followed by heating to 100 <inline-formula><mml:math id="M47" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and
flushing at a high rate with humidified synthetic air and elevated ozone
(several ppmv) (Kirkby et al., 2016). This
resulted in SO<inline-formula><mml:math id="M48" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and H<inline-formula><mml:math id="M49" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>SO<inline-formula><mml:math id="M50" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> concentrations that were below the
detection limit (<inline-formula><mml:math id="M51" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 15 pptv and <inline-formula><mml:math id="M52" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 5 <inline-formula><mml:math id="M53" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M54" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math id="M55" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
respectively), and total organics (largely comprising high
volatility C<inline-formula><mml:math id="M56" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>–C<inline-formula><mml:math id="M57" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> compounds) that were below 150 pptv.</p>
      <p id="d1e1248">The air in the chamber is ionized by galactic cosmic rays (GCRs); higher ion
generation rates can be induced by a pion beam (<inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">π</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>) from the CERN
Proton Synchrotron enabling controlled simulation of galactic cosmic rays
throughout the troposphere. Therefore, the total ion-pair production rate in
the chamber is between 2 (no beam) and 100 cm<inline-formula><mml:math id="M59" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (maximum
available beam intensity, Franchin et al., 2015).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Instrumentation</title>
      <p id="d1e1292">The main instruments employed for this study were atmospheric pressure
interface time-of-flight (APi-TOF, Aerodyne Research Inc. &amp; Tofwerk AG)
mass spectrometers. The instrument has two main parts. The first is the
atmospheric pressure interface (APi), where ions are transferred from
atmospheric pressure to low pressures via three differentially pumped vacuum
stages. Ions are focused and guided by two quadrupoles and ion lenses. The
second is the time-of-flight mass analyzer (TOF), where the pressure is
approximately 10<inline-formula><mml:math id="M61" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> mbar. The sample flow from the chamber was 10 L min<inline-formula><mml:math id="M62" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
and the core-sampled flow into the APi was 0.8 L min<inline-formula><mml:math id="M63" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, with the remaining
flow being discarded.</p>
      <p id="d1e1331">There is no direct chemical ionization in front of the instrument. The
APi-TOF measures the positive or negative ions and cluster ions as they are
present in the ambient atmosphere. As described above, in the CLOUD chamber
ions are formed by GCRs or deliberately by the <inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">π</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> beam, leading to ion
concentrations of a few hundred to thousands per cm<inline-formula><mml:math id="M65" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>, respectively. In
our chamber the dominant ionizing species are NH<inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
NO<inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (see below). These ions mainly form clusters with the organic
molecules, which is driven by the cluster energies. Therefore, the signals
obtained do not provide a quantitative measure of the concentrations of the
compounds. The higher the cluster energy with certain compounds, the higher
the ion cluster concentration will be.</p>
      <p id="d1e1378">We calibrated the APi-TOF using trioctylammonium bis(trifluoromethylsulfonyl)imide
(MTOA-B3FI, C<inline-formula><mml:math id="M68" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">27</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M69" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">54</mml:mn></mml:msub></mml:math></inline-formula>F<inline-formula><mml:math id="M70" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:math></inline-formula>N<inline-formula><mml:math id="M71" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M72" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>S<inline-formula><mml:math id="M73" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) to facilitate exact ion
mass determination in both positive and negative ion modes. We employed two
calibration methods, the first one by nebulizing MTOA-B3FI and separating cluster
ions with a high-resolution ultra-fine differential mobility analyzer (UDMA)
(see Steiner et al., 2014 for more information); the
second one by using electrospray ionization of a MTOA-B3FI solution. The
calibration with the electrospray ionization was performed three times, one
for each temperature. These calibrations enabled mass/charge (<inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>/</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>) measurements
with high accuracy up to 1500 Th in the positive ion mode and 900 Th in the
negative ion mode.</p>
      <p id="d1e1448">Additionally, two peaks in the positive ion mode were identified as
contaminants and also used for calibration purposes at the three different
temperatures: C<inline-formula><mml:math id="M75" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M76" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula>OH<inline-formula><mml:math id="M77" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula> and C<inline-formula><mml:math id="M78" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M79" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">28</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M80" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M81" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>.
These peaks were present before the addition of ozone in the chamber
(therefore being most likely not products of <inline-formula><mml:math id="M82" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene ozonolysis)
and were also detected by a proton transfer reaction time-of-flight mass
spectrometer (PTR-TOF-MS). Both peaks appeared at the same <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>/</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> at all three
temperatures. Therefore, based on the calibrations with the UDMA, the
electrospray and the two organic<?pagebreak page68?> calibration peaks, we expect an accurate
mass calibration at the three temperatures.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Experimental conditions</title>
      <p id="d1e1540">All ambient ion composition data reported here were obtained during
nucleation experiments from pure <inline-formula><mml:math id="M84" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene ozonolysis. The
experiments were conducted under dark conditions, at a relative humidity (RH)
of 38 % with an O<inline-formula><mml:math id="M85" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> mixing ratio between 33 and 43 ppbv
(Table 1). The APi-TOF measurements were made under
both galactic cosmic ray (GCR) and <inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">π</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> beam conditions, with
ion-pair concentrations around 700 and 4000 cm<inline-formula><mml:math id="M87" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e1585">Experiments performed at the CLOUD chamber.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="center"/>
     <oasis:colspec colnum="5" colname="col5" align="center"/>
     <oasis:colspec colnum="6" colname="col6" align="left"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Campaign</oasis:entry>
         <oasis:entry colname="col2">Experiment</oasis:entry>
         <oasis:entry colname="col3">Ionization</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M88" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene</oasis:entry>
         <oasis:entry colname="col5">O<inline-formula><mml:math id="M89" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col6">Mass spectrometer</oasis:entry>
         <oasis:entry colname="col7">Temperature</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">no.</oasis:entry>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4">(pptv)</oasis:entry>
         <oasis:entry colname="col5">(ppbv)</oasis:entry>
         <oasis:entry colname="col6">polarity</oasis:entry>
         <oasis:entry colname="col7">(<inline-formula><mml:math id="M90" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">CLOUD 8</oasis:entry>
         <oasis:entry colname="col2">1211.02</oasis:entry>
         <oasis:entry colname="col3">GCR</oasis:entry>
         <oasis:entry colname="col4">258</oasis:entry>
         <oasis:entry colname="col5">33.8</oasis:entry>
         <oasis:entry colname="col6">Negative</oasis:entry>
         <oasis:entry colname="col7">5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CLOUD 10</oasis:entry>
         <oasis:entry colname="col2">1710.04</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">π</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> beam</oasis:entry>
         <oasis:entry colname="col4">618</oasis:entry>
         <oasis:entry colname="col5">41.5</oasis:entry>
         <oasis:entry colname="col6">Positive</oasis:entry>
         <oasis:entry colname="col7">5</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CLOUD 10</oasis:entry>
         <oasis:entry colname="col2">1712.04</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">π</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> beam</oasis:entry>
         <oasis:entry colname="col4">511</oasis:entry>
         <oasis:entry colname="col5">40.3</oasis:entry>
         <oasis:entry colname="col6">Negative and positive</oasis:entry>
         <oasis:entry colname="col7">25</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">CLOUD 10</oasis:entry>
         <oasis:entry colname="col2">1727.04</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">π</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> beam</oasis:entry>
         <oasis:entry colname="col4">312</oasis:entry>
         <oasis:entry colname="col5">43.3</oasis:entry>
         <oasis:entry colname="col6">Negative and positive</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M94" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p id="d1e1823">Positive spectra at 5 <inline-formula><mml:math id="M95" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. <bold>(a)</bold> Low mass region, where
primary ions from galactic cosmic rays are observed, as well as secondary ions
such as NH<inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, which are formed by charge transfer to contaminants.
<bold>(b)</bold> Higher mass region during pure biogenic nucleation, which shows
broad bands in steps of C<inline-formula><mml:math id="M97" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>. Most of the peaks represent clusters with NH<inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/65/2018/acp-18-65-2018-f01.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS4">
  <title>Quantum chemical calculations</title>
      <p id="d1e1887">Quantum chemical calculations were performed on the cluster ion formation
from the oxidation products of <inline-formula><mml:math id="M99" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene. The Gibbs free energies of
formation of representative HOM clusters were calculated using the MO62X
functional (Zhao and Truhlar, 2008), and the
6-31<inline-formula><mml:math id="M100" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>G(d) basis set (Ditchfield, 1971) using the
Gaussian09 program (Frisch et al., 2009). This method has been previously
applied for clusters containing large organic molecules (Kirkby et al., 2016).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <title>Ion composition</title>
      <p id="d1e1916">Under dry conditions (RH <inline-formula><mml:math id="M101" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0 %) and GCR ionization, the main detected
positive ions were N<inline-formula><mml:math id="M102" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M103" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula> and O<inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. With increasing RH up
to <inline-formula><mml:math id="M105" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 30 % we observed the water clusters H<inline-formula><mml:math id="M106" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M107" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>,
(H<inline-formula><mml:math id="M108" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O) <inline-formula><mml:math id="M109" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> H<inline-formula><mml:math id="M110" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M111" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula> and (H<inline-formula><mml:math id="M112" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O)<inline-formula><mml:math id="M113" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M114" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> H<inline-formula><mml:math id="M115" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M116" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>
as well as NH<inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, C<inline-formula><mml:math id="M118" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M119" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:math></inline-formula>NH<inline-formula><mml:math id="M120" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula> (protonated
pyridine), Na<inline-formula><mml:math id="M121" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula> and K<inline-formula><mml:math id="M122" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula> (Fig. 1a). The concentrations of the
precursors of some of the latter ions are expected to be very low; for
example, NH<inline-formula><mml:math id="M123" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> mixing ratios were previously found to be in the range of
0.3 pptv (at <inline-formula><mml:math id="M124" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M125" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C), 2 pptv (at 5 <inline-formula><mml:math id="M126" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) and 4.3 pptv
(at 25 <inline-formula><mml:math id="M127" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) (Kürten et al., 2016).
However, in a freshly cleaned chamber we expect ammonia levels below 1 pptv
even at the higher temperatures. For the negative ions, NO<inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> was
the main detected background signal. Before adding any trace gas to the
chamber the signal of HSO<inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> was at a level of 1 % of the
NO<inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> signal (corresponding to <inline-formula><mml:math id="M131" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 5 <inline-formula><mml:math id="M132" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M133" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> molecules cm<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, Kirkby et al., 2016),
excluding any contribution of sulfuric acid to nucleation in our experiments.</p>
      <p id="d1e2237">After initiating <inline-formula><mml:math id="M135" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene ozonolysis, more than 460 different peaks
from organic ions were identified in the positive spectrum. The majority of
peaks were clustered with NH<inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, while only 10.2 % of the
identified peaks were composed of protonated organic molecules. In both
cases the organic core was of the type C<inline-formula><mml:math id="M137" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">7</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M138" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">10</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M139" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula> for
the monomer region and C<inline-formula><mml:math id="M140" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">17</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M141" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">24</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">32</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M142" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">19</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula> for the dimer region.</p>
      <p id="d1e2344">In the negative spectrum we identified more than 530 HOMs, of which
<inline-formula><mml:math id="M143" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 62 % corresponded to organic clusters with NO<inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
or, to a lesser degree, HNO<inline-formula><mml:math id="M145" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M146" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. The rest of the
peaks were negatively charged organic molecules. In general, the organic
core of the molecules was of the type C<inline-formula><mml:math id="M148" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">7</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M149" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">9</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">16</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M150" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>
in the monomer region and C<inline-formula><mml:math id="M151" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">17</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M152" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">19</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">32</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M153" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">10</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula> in the dimer
region. For brevity we refer to the monomer, dimer (and <inline-formula><mml:math id="M154" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula>-mer) as C<inline-formula><mml:math id="M155" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>,
C<inline-formula><mml:math id="M156" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> (and C<inline-formula><mml:math id="M157" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">10</mml:mn><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula>), respectively. Here, the subscript indicates the
maximum number of carbon atoms in these molecules, even though the bands
include species with slightly fewer carbon atoms.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p id="d1e2519">Comparison of the negative ion composition during <inline-formula><mml:math id="M158" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene
ozonolysis in CLOUD and during nighttime in the boreal forest at Hyytiälä
(Finland). <bold>(a)</bold> CLOUD spectrum on a logarithmic scale. <bold>(b)</bold> CLOUD
spectrum on a linear scale. <bold>(c)</bold> Typical nighttime spectrum from the
boreal forest at Hyytiälä (Finland), adapted from Ehn et al. (2010).</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/65/2018/acp-18-65-2018-f02.pdf"/>

        </fig>

<sec id="Ch1.S3.SS1.SSS1">
  <title>Positive spectrum</title>
      <p id="d1e2550">The positive spectrum is characterized by bands of high intensity at
C<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> intervals, as shown in Fig. 1b. Although we detected the monomer
band (C<inline-formula><mml:math id="M160" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>), its integrated intensity was much lower than the C<inline-formula><mml:math id="M161" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>
band; furthermore, the trimer and pentamer bands were almost completely
absent. Based on chemical ionization mass spectrometry measurements, Kirkby
et al. (2016) calculated that the HOM molar yield at 5 <inline-formula><mml:math id="M162" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C was
3.2 % for the ozonolysis of <inline-formula><mml:math id="M163" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, with a fractional yield of
10 to 20 % for dimers. A combination reaction of two oxidized peroxy
radicals has been previously reported to explain the rapid formation of
dimers resulting in covalently bound molecules (see Sect. 3.3). The
pronounced dimer signal with NH<inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> indicates that (low-volatility)
dimers are necessary for positive ion nucleation and initial growth. We
observed growth by dimer steps up to C<inline-formula><mml:math id="M165" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">80</mml:mn></mml:msub></mml:math></inline-formula> and possibly even C<inline-formula><mml:math id="M166" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">100</mml:mn></mml:msub></mml:math></inline-formula>.
A cluster of two dimers, C<inline-formula><mml:math id="M167" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula>, with a mass/charge in the range of
<inline-formula><mml:math id="M168" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 700–1100 Th, has a mobility diameter around 1.5 nm (based on Ehn et al., 2011).</p>
      <p id="d1e2643">Our observation of HOM–NH<inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> clusters implies strong hydrogen
bonding between the two species. This is confirmed by quantum chemical
calculations which shall be discussed in Sect. 3.3. Although hydrogen bonding could also be
expected between HOMs and H<inline-formula><mml:math id="M170" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M171" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula>, we do not observe such clusters.
This probably arises from the higher proton affinity of NH<inline-formula><mml:math id="M172" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, 203.6 kcal mol<inline-formula><mml:math id="M173" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
compared with H<inline-formula><mml:math id="M174" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O, 164.8 kcal mol<inline-formula><mml:math id="M175" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Hunter and
Lias, 1998). Thus, most H<inline-formula><mml:math id="M176" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M177" display="inline"><mml:msup><mml:mi/><mml:mo>+</mml:mo></mml:msup></mml:math></inline-formula> ions in CLOUD will transfer their
proton to NH<inline-formula><mml:math id="M178" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> to form NH<inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S3.SS1.SSS2">
  <title>Negative spectrum</title>
      <p id="d1e2764">In the negative spectra, the monomer, dimer, and trimer bands are observed
during nucleation (Fig. 2). Monomers and dimers have similar signal
intensities, whereas the trimer intensity is at least 10 times lower (Fig. 2a
and b). The trimer signal is reduced since it is a cluster of two gas
phase species (C<inline-formula><mml:math id="M180" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M181" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M182" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>). Additionally, a lower transmission in
the APi-TOF may also be a reason for the reduced signal.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p id="d1e2794">Positive <bold>(a–c)</bold> and negative <bold>(d–f)</bold> mass spectra
during pure biogenic nucleation induced by ozonolysis of <inline-formula><mml:math id="M183" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene at
three temperatures: 25 <inline-formula><mml:math id="M184" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C <bold>(a, d)</bold>, 5 <inline-formula><mml:math id="M185" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C <bold>(b, e)</bold>
and <inline-formula><mml:math id="M186" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M187" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C <bold>(c, f)</bold>. A progressive shift towards a lower oxygen
content and lower masses is observed in all bands as the temperature decreases.
Moreover, the appearance of C<inline-formula><mml:math id="M188" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula> species can be seen in the positive
spectrum at the lowest temperature <bold>(c)</bold>.</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/65/2018/acp-18-65-2018-f03.pdf"/>

          </fig>

      <p id="d1e2873">In Fig. 2, we compare the CLOUD negative-ion spectrum with the one from
nocturnal atmospheric measurements from the boreal forest at
Hyytiälä as reported by Ehn et al. (2010). Figure 2a and b show the negative spectrum of <inline-formula><mml:math id="M189" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene
ozonolysis in the CLOUD chamber on logarithmic<?pagebreak page69?> and linear scales,
respectively. Figure 2c shows the Hyytiälä spectrum for comparison.
Although the figure shows unit mass resolution, the high-resolution analysis
confirms the identical composition for the main peaks:
C<inline-formula><mml:math id="M190" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M191" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">12</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M192" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M193" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>,
C<inline-formula><mml:math id="M195" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M196" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M197" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M198" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>,
C<inline-formula><mml:math id="M200" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M201" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M202" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">8</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M203" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>,
C<inline-formula><mml:math id="M205" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M206" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M207" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">9</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M208" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>,
C<inline-formula><mml:math id="M210" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M211" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">16</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M212" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M213" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
C<inline-formula><mml:math id="M215" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M216" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M217" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">11</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M218" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (marked in the monomer
region), and C<inline-formula><mml:math id="M220" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M221" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">28</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M222" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">11</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M223" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M224" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>,
C<inline-formula><mml:math id="M225" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M226" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">28</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M227" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">12</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M228" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M229" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>,
C<inline-formula><mml:math id="M230" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M231" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M232" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">12</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M233" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>,
C<inline-formula><mml:math id="M235" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">19</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M236" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">28</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M237" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M238" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>,
C<inline-formula><mml:math id="M240" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M241" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M242" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M243" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M244" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>,
C<inline-formula><mml:math id="M245" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M246" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">32</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M247" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">15</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M248" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>,
C<inline-formula><mml:math id="M250" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M251" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M252" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">16</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M253" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M254" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>,
C<inline-formula><mml:math id="M255" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M256" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M257" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">17</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M258" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and
C<inline-formula><mml:math id="M260" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M261" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M262" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">18</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M263" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (marked in the dimer
region). The close correspondence in terms of composition of the main HOMs
from the lab and the field both in the monomer and dimer region indicates a
close reproduction of the atmospheric nighttime conditions at
Hyytiälä by the CLOUD experiment. In both cases the ion composition
was dominated by HOMs clustered with NO<inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. However,
Ehn et al. (2010) did not report nocturnal
nucleation, possibly because of a higher ambient condensation sink than in
the CLOUD chamber.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Temperature dependence</title>
      <p id="d1e3598">Experiments at three different temperatures (25, 5 and <inline-formula><mml:math id="M266" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M267" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) were conducted at similar relative humidity and
ozone mixing ratios (Table 1 and Fig. 3). Mass
defect plots are shown for the same data in Fig. 4. The mass defect is the
difference between the exact and the integer mass and is shown on the <inline-formula><mml:math id="M268" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis
versus the mass/charge on the <inline-formula><mml:math id="M269" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis. Each point represents a distinct
atomic composition of a molecule or cluster. Although the observations
described in the following are valid for both polarities, the trends at the
three temperatures are better seen in the positive mass spectra due to a
higher sensitivity at high <inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:mi>m</mml:mi><mml:mo>/</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e3643">The first point to note is the change in the distribution of the signal
intensity seen in Fig. 3 (height of the peaks) and in Fig. 4 (size of
the dots) with temperature. In the positive ion mode, the dimer band has the
highest intensity at 25 and 5 <inline-formula><mml:math id="M271" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (see also Fig. 1b), while at
<inline-formula><mml:math id="M272" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M273" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C the intensity of the monomer becomes comparable to that of
the dimer. This indicates a reduced rate of dimer formation at
<inline-formula><mml:math id="M274" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M275" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, or that the intensity of the ion signal depends on both the
concentration of the neutral compound and on the stability of the ion
cluster. Although the monomer concentration is higher than that of the
dimers (Tröstl et al., 2016), the C<inline-formula><mml:math id="M276" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> ions
are<?pagebreak page70?> the more stable ion clusters as they can form more easily two hydrogen
bonds with NH<inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (see Sect. 3.3). Thus,
positive clusters formed from monomers may not be stable enough at higher
temperatures. Moreover, charge transfer to dimers is also favored.</p>
      <p id="d1e3709">The data also show a “shift” in all band distributions towards higher
masses with increasing temperature, denoting a higher concentration of the
more highly oxygenated molecules and the appearance of progressively more
oxygenated compounds at higher temperatures. The shift is even more
pronounced in the higher mass bands, as clearly seen in the C<inline-formula><mml:math id="M278" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula> band of
the positive ion mode in Fig. 3a–c. In this case the combination of two
HOM dimers to a C<inline-formula><mml:math id="M279" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula> cluster essentially doubles the shift of the band
towards higher mass/charge at higher temperatures compared to the
C<inline-formula><mml:math id="M280" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> band. Moreover, the width of each band increases with temperature, as
clearly seen in the positive ion mode in Fig. 4, especially for the
C<inline-formula><mml:math id="M281" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula> band. At high temperatures, the production of more highly
oxygenated HOMs seems to increase the possible combinations of clusters,
resulting in a wider band distribution.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p id="d1e3751">Signal weighted average O : C ratios for positive and negative
spectra at 25, 5 and <inline-formula><mml:math id="M282" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M283" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:colspec colnum="3" colname="col3" align="center"/>
     <oasis:colspec colnum="4" colname="col4" align="center"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:colspec colnum="6" colname="col6" align="center"/>
     <oasis:colspec colnum="7" colname="col7" align="center"/>
     <oasis:colspec colnum="8" colname="col8" align="center"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry rowsep="1" namest="col2" nameend="col8">O <inline-formula><mml:math id="M284" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C </oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Temperature</oasis:entry>
         <oasis:entry rowsep="1" namest="col2" nameend="col4">Positive mode </oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry rowsep="1" namest="col6" nameend="col8">Negative mode </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">(<inline-formula><mml:math id="M285" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C)</oasis:entry>
         <oasis:entry colname="col2">Monomer</oasis:entry>
         <oasis:entry colname="col3">Dimer</oasis:entry>
         <oasis:entry colname="col4">Total</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6">Monomer</oasis:entry>
         <oasis:entry colname="col7">Dimer</oasis:entry>
         <oasis:entry colname="col8">Total</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">25</oasis:entry>
         <oasis:entry colname="col2">0.37</oasis:entry>
         <oasis:entry colname="col3">0.57</oasis:entry>
         <oasis:entry colname="col4">0.54</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6">0.94</oasis:entry>
         <oasis:entry colname="col7">0.81</oasis:entry>
         <oasis:entry colname="col8">0.90</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">5</oasis:entry>
         <oasis:entry colname="col2">0.34</oasis:entry>
         <oasis:entry colname="col3">0.51</oasis:entry>
         <oasis:entry colname="col4">0.49</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6">0.88</oasis:entry>
         <oasis:entry colname="col7">0.66</oasis:entry>
         <oasis:entry colname="col8">0.75</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M286" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25</oasis:entry>
         <oasis:entry colname="col2">0.31</oasis:entry>
         <oasis:entry colname="col3">0.38</oasis:entry>
         <oasis:entry colname="col4">0.36</oasis:entry>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6">0.79</oasis:entry>
         <oasis:entry colname="col7">0.65</oasis:entry>
         <oasis:entry colname="col8">0.68</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p id="d1e3953">Mass defect plots with the color code denoting the O : C ratio (of
the organic core) at 25, 5 and <inline-formula><mml:math id="M287" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M288" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for positive <bold>(a–c)</bold>
and negative ion mode <bold>(d–f)</bold>. A lower O : C ratio is observed in
the positive ion mode than in the negative ion mode. The intensity of the main
peaks (linearly proportional to the size of the dots) changes with temperature
for both polarities due to a lower degree of oxygenation at lower temperature.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/65/2018/acp-18-65-2018-f04.pdf"/>

        </fig>

      <p id="d1e3984">This trend in the spectra indicates that the unimolecular autoxidation
reaction accelerates at higher temperatures in competition to the
bimolecular termination reactions with HO<inline-formula><mml:math id="M289" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and RO<inline-formula><mml:math id="M290" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. This is
expected. If unimolecular and bimolecular reactions are competitive, the
unimolecular process will have a much higher barrier because the
pre-exponential term for a unimolecular process is a vibrational frequency
while the pre-exponential term for the bimolecular process is at most the
bimolecular collision frequency, which is 4 orders of magnitude lower.
Quantum chemical calculations determine activation energies between
22.56 and 29.46 kcal mol<inline-formula><mml:math id="M291" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the autoxidation of different RO<inline-formula><mml:math id="M292" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> radicals
from <inline-formula><mml:math id="M293" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene (Rissanen et al., 2015). Thus, such a high barrier will strongly reduce the autoxidation
rate at the low temperatures.</p>
      <?pagebreak page71?><p id="d1e4033">The change in the rate of autoxidation is also reflected in the O : C ratio,
both in the positive ion mode (Fig. 4a–c), and the negative ion mode
(Fig. 4d–f), showing a clear increase with increasing temperature. The average O : C
ratios (weighted by the peak intensities) are presented in
Table 2 for both polarities and the three
temperatures, for all the identified peaks (total) and separately for the
monomer and dimer bands. For a temperature change from 25 to <inline-formula><mml:math id="M294" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M295" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C
the O : C ratio decreases for monomers, dimers and total number of peaks. At
high masses (e.g., for the C<inline-formula><mml:math id="M296" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M297" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula> bands), the O : C ratio may
be slightly biased since accurate identification of the molecules is less
straightforward: as an example, C<inline-formula><mml:math id="M298" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">39</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M299" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">56</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M300" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">25</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M301" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M302" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
has an exact mass-to-charge ratio of 942.34 Th (O <inline-formula><mml:math id="M303" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C <inline-formula><mml:math id="M304" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.64),
which is very similar to C<inline-formula><mml:math id="M305" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M306" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">60</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M307" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">24</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M308" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M309" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> at
942.38 Th (O <inline-formula><mml:math id="M310" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C <inline-formula><mml:math id="M311" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.60). However, such possible
misidentification would not influence the calculated total O <inline-formula><mml:math id="M312" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C by more
than 0.05, and the main conclusions presented here remain robust.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p id="d1e4202">Comparison of the positive ion mode spectrum measured (blue), the
C<inline-formula><mml:math id="M313" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula> band obtained by the combination of all C<inline-formula><mml:math id="M314" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> molecules (light
gray),
and the C<inline-formula><mml:math id="M315" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula> band obtained by combination of only the C<inline-formula><mml:math id="M316" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> molecules
with O <inline-formula><mml:math id="M317" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C <inline-formula><mml:math id="M318" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.4 (dark gray). The low or absent signals at the lower
masses obtained by permutation suggest that only the highly oxygenated dimers
are able to cluster and form C<inline-formula><mml:math id="M319" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/65/2018/acp-18-65-2018-f05.png"/>

        </fig>

      <p id="d1e4271">The O : C ratios are higher for the negative ions than for the positive ions
at any of the three temperatures. Although some of the organic cores are the
same in the positive and negative ion mode, the intensity of the peaks of
the most oxygenated species is higher in the negative spectra. While the
measured O : C ratio ranges between 0.4 and 1.2 in the negative ion mode, it
is between 0.1 and 1.2 in the positive ion mode. An O : C ratio of 0.1, which
was detected only in the positive ion mode, corresponds to monomers and
dimers with two oxygen atoms. The presence of molecules with such low oxygen
content was also confirmed with a<?pagebreak page73?> proton transfer reaction time-of-flight
mass spectrometer (PTR-TOF-MS), at least in the monomer region. Ions with
O : C ratio less than 0.3 are probably from the main known oxidation products
like pinonaldehyde, pinonic acid, etc., but also from minor products like
pinene oxide and other not yet identified compounds. It is likely that these
molecules, which were detected only in the positive mode, contribute only to
the growth of the newly formed particles (if at all) rather than to
nucleation, owing to their high volatility (Tröstl et al., 2016). In
this sense, the positive spectrum could reveal both the molecules that
participate in the new particle formation and those that contribute to
growth. The differences in the O : C ratios between the two polarities are a
result of the affinities of the organic molecules to form clusters either
with NO<inline-formula><mml:math id="M320" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> or NH<inline-formula><mml:math id="M321" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, which, in turn, depends on the
molecular structure and the functional groups. Hyttinen
et al. (2015) reported the binding energies of selected highly oxygenated
products of cyclohexene detected by a nitrate CIMS, finding that the
addition of OOH groups to the HOM strengthens the binding of the organic
core with NO<inline-formula><mml:math id="M322" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. Even when the number of H-bonds between
NO<inline-formula><mml:math id="M323" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and HOM remains the same, the addition of more oxygen atoms
to the organic compound could strengthen the binding with the NO<inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
ion. Thus, the less oxygenated HOMs were not detected in those experiments,
neither in ours, in the negative mode. The binding energies were calculated
for the positive mode HOMs–NH<inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and are discussed in Sect. 3.3.</p>
      <p id="d1e4348">We also tested to which extent the formation of the C<inline-formula><mml:math id="M326" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula> band could be
reproduced by permutation of the potential C<inline-formula><mml:math id="M327" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> molecules weighted by the
dimer signal intensity. Figure 5 shows the measured spectrum (blue) and two
types of modeled tetramers: one combining all peaks from the C<inline-formula><mml:math id="M328" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> band
(light gray) and one combining only those peaks with an organic core with
O <inline-formula><mml:math id="M329" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C <inline-formula><mml:math id="M330" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.4 – i.e., likely representing non-volatile C<inline-formula><mml:math id="M331" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> molecules (dark gray). The better
agreement of the latter modeled mass spectrum of the tetramer band with the
measured one suggests that only the molecules with O <inline-formula><mml:math id="M332" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C <inline-formula><mml:math id="M333" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.4 are able
to form the tetramer cluster. This would mean that C<inline-formula><mml:math id="M334" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> molecules with
2–7 oxygen atoms are likely not to contribute to the nucleation, but only to
the growth of the newly formed particles. One has to note that the
comparison of modeled and measured spectra relies on the assumption that
the charge distribution of dimers is also reflected in the tetramers.</p>
      <p id="d1e4425">These two observations (change in signal distribution and band “shift”)
are not only valid for positive and negative ions, but also for the neutral
molecules as observed by two nitrate chemical-ionization
atmospheric-pressure-interface time-of-flight mass spectrometers
(CI-APi-TOF; Aerodyne Research Inc. and Tofwerk AG). This confirms that
there is indeed a change in the HOM composition with different temperature
rather than a charge redistribution effect, which would only be observed for
the ions (APi-TOF). The detailed analysis of the neutral molecules detected
by these CI-APi-TOFs will be the subject of another paper and is not discussed here.</p>
      <p id="d1e4428">A third distinctive trend in the positive mode spectra at the three
temperatures is the increase in signal intensity of the C<inline-formula><mml:math id="M335" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula> band at
<inline-formula><mml:math id="M336" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M337" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. The increase in the signal of the trimer also seems to
occur in the negative ion mode when comparing Fig. 3d and f.
For this polarity, data from two campaigns were combined
(Table 1). To avoid a bias by possible differences in the APi-TOF settings, we only compare the temperatures from
the same campaign, CLOUD 10, therefore experiments at 25 and
<inline-formula><mml:math id="M338" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M339" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. The increase in the trimer signal may be due to greater
stability of the monomer–dimer clusters or even of three C<inline-formula><mml:math id="M340" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> molecules
at low temperatures, as further discussed below.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Quantum chemical calculations</title>
      <p id="d1e4488">Three points were addressed in the quantum chemical calculations to
elucidate the most likely formation pathway for the first clusters, and its
temperature dependence. These included (i) the stability of the organic
cores with NO<inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M342" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> depending on the binding
functional group, (ii) the difference between charged and neutral clusters
in terms of clustering energies, and finally (iii) the possible nature of
clusters in the dimer and trimer region.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p id="d1e4517">Quantum chemical calculations of the free energy related to the cluster
formation between NH<inline-formula><mml:math id="M343" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and three structurally similar molecules with
different functional groups: <bold>(a)</bold> acetaldehyde, <bold>(b)</bold> acetic acid
and <bold>(c)</bold> peracetic acid.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/65/2018/acp-18-65-2018-f06.pdf"/>

        </fig>

      <p id="d1e4547">The calculations showed that among the different functional groups the best
interacting groups with NO<inline-formula><mml:math id="M344" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> are in order of importance carboxylic
acids (R–C(<inline-formula><mml:math id="M345" display="inline"><mml:mo lspace="0mm">=</mml:mo></mml:math></inline-formula> O)–OH), hydroxyls (R–OH), peroxy acids (R–C(<inline-formula><mml:math id="M346" display="inline"><mml:mo lspace="0mm">=</mml:mo></mml:math></inline-formula> O)–O–OH),
hydroperoxides (R–O–OH) and carbonyls (R–(R<inline-formula><mml:math id="M347" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula>–) C <inline-formula><mml:math id="M348" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> O). On the
other hand, NH<inline-formula><mml:math id="M349" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> preferably forms a hydrogen bond with the
carbonyl group independent of which functional group the carbonyl group is
linked to; Fig. 6 shows examples of NH<inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> clusters with
corresponding free energies of formation for carbonyls (<inline-formula><mml:math id="M351" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M352" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M353" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>17.98 kcal mol<inline-formula><mml:math id="M354" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>),
carboxylic acid (<inline-formula><mml:math id="M355" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M356" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M357" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>17.32 kcal mol<inline-formula><mml:math id="M358" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) and peroxy acid
(<inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M360" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M361" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>17.46 kcal mol<inline-formula><mml:math id="M362" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>). For the three examples shown, the
interaction of one hydrogen from NH<inline-formula><mml:math id="M363" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> with a C <inline-formula><mml:math id="M364" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> O group is
already very stable with a free energy of cluster ion formation close to <inline-formula><mml:math id="M365" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>18 kcal mol<inline-formula><mml:math id="M366" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p>
      <?pagebreak page74?><p id="d1e4765">To evaluate the effect of the presence of a second C <inline-formula><mml:math id="M367" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> O on the binding of
the organic compound with NH<inline-formula><mml:math id="M368" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, we performed a series of
calculations with a set of surrogates containing two C <inline-formula><mml:math id="M369" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> O groups separated
by different numbers of atoms, as shown in Fig. 7. The addition of a
second functional group allows the formation of an additional hydrogen bond,
increasing the stability of the cluster considerably (almost 2-fold) from
about <inline-formula><mml:math id="M370" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>18 to <inline-formula><mml:math id="M371" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>34.07 kcal mol<inline-formula><mml:math id="M372" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, whereby the position of the second
functional group to form an optimal hydrogen bond (with a 180<inline-formula><mml:math id="M373" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>
angle for N–H–O) strongly influences the stability of the cluster, as can be
seen in Fig. 7. Thus, optimal separation and
conformational flexibility of functional groups is needed to enable
effective formation of two hydrogen bonds with NH<inline-formula><mml:math id="M374" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. This could be
an explanation for the observation that the signal intensity is higher for
dimers than for monomers, as dimers can more easily form two optimal
hydrogen bonds with NH<inline-formula><mml:math id="M375" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p id="d1e4857">Quantum chemical calculations for different organic molecules with a
carbonyl as the interacting functional group with NH<inline-formula><mml:math id="M376" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. Increasing
the interacting groups from one to two increases the stability of the
cluster. The distance between the interacting groups also influences the
cluster stability.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/65/2018/acp-18-65-2018-f07.pdf"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p id="d1e4881">Gibbs free energies of cluster formation <inline-formula><mml:math id="M377" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> at three different
temperatures. <inline-formula><mml:math id="M378" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> for the molecules C<inline-formula><mml:math id="M379" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M380" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M381" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:math></inline-formula> (C<inline-formula><mml:math id="M382" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>)
and C<inline-formula><mml:math id="M383" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M384" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M385" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula> (C<inline-formula><mml:math id="M386" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>) forming neutral, as well as negative
and positive ion clusters.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Cluster process</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M387" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>G</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">25</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M388" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>G</mml:mi><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M389" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>G</mml:mi><mml:mrow><mml:mn mathvariant="normal">25</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">(kcal mol<inline-formula><mml:math id="M390" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col4">(kcal mol<inline-formula><mml:math id="M391" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col5">(kcal mol<inline-formula><mml:math id="M392" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Neutral</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M393" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M394" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M395" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M396" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>7.3</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M397" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5.7</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M398" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.7</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M399" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M400" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M401" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M402" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.2</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M403" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.1</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M404" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.4</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Positive</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M405" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M406" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M408" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>23.4</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M409" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>22.5</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M410" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>21.8</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M411" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M412" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M413" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M414" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>31.8</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M415" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>30.9</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M416" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>30.2</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M417" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M418" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M419" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M420" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M421" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M422" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>12.9</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M423" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.7</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M424" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.9</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M425" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M426" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M427" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M428" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M429" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M430" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>26.0</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M431" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>24.3</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M432" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>23.3</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M433" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M434" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M435" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M436" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M437" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M438" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>17.6</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M439" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>15.9</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M440" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14.8</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Negative</oasis:entry>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M441" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M442" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M443" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">10</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M444" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>22.2</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M445" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20.9</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M446" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20.1</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M447" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M448" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M449" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">10</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M450" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>21.3</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M451" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>19.9</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M452" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>18.9</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M453" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M454" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M455" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M456" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>27.3</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M457" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25.9</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M458" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25.1</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M459" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M460" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M461" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M462" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>26.9</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M463" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25.6</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M464" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>24.7</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">C<inline-formula><mml:math id="M465" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M466" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M467" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M468" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M469" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M470" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.3</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M471" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10.1</oasis:entry>
         <oasis:entry colname="col5"><inline-formula><mml:math id="M472" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>9.2</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e5934">As shown by Kirkby et al. (2016), ions
increase the nucleation rates by 1–2 orders of magnitudes compared to
neutral nucleation. This is expected due to the strong electrostatic
interaction between charged clusters. To understand how the stability
difference relates to the increase in the nucleation rate, the <inline-formula><mml:math id="M473" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula>
of charged and neutral clusters were compared. For this,
C<inline-formula><mml:math id="M474" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M475" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M476" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">7</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M477" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M478" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M479" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">14</mml:mn></mml:msub></mml:math></inline-formula> were selected as
representative molecules of the monomer and dimer region, respectively (Kirkby et al., 2016).
Table 3 shows the calculated free energies of
formation (<inline-formula><mml:math id="M480" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula>) of neutral, positive and negative clusters from these
C<inline-formula><mml:math id="M481" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M482" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> molecules at the three temperatures of the experiment.
Results show that at 5 <inline-formula><mml:math id="M483" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, for example, <inline-formula><mml:math id="M484" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> of the neutral
dimer (C<inline-formula><mml:math id="M485" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M486" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M487" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>) is <inline-formula><mml:math id="M488" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5.76 kcal mol<inline-formula><mml:math id="M489" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> while it decreases to
<inline-formula><mml:math id="M490" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20.9 kcal mol<inline-formula><mml:math id="M491" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> when a neutral and a negative ion form a cluster
(C<inline-formula><mml:math id="M492" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M493" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math id="M494" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">10</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>). Similarly, trimers show a substantial increase in stability
when they are charged – i.e., from <inline-formula><mml:math id="M495" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.1 to
<inline-formula><mml:math id="M496" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>19.9 kcal mol<inline-formula><mml:math id="M497" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, for the neutral and negative cases, respectively. The
reduced values of <inline-formula><mml:math id="M498" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> for the charged clusters (positive and
negative) indicate a substantial decrease in the evaporation rate compared
to that for neutral clusters, and, therefore, higher stability. Comparing
the NH<inline-formula><mml:math id="M499" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NO<inline-formula><mml:math id="M500" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> clusters, the energies of formation
for the monomer are <inline-formula><mml:math id="M501" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>22.5 and <inline-formula><mml:math id="M502" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25.9 kcal mol<inline-formula><mml:math id="M503" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively, showing slightly higher stability for the
negative cluster. Inversely, the covalently bound dimer showed greater
stability for the positive ion (<inline-formula><mml:math id="M504" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>30.9 kcal mol<inline-formula><mml:math id="M505" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) compared to the negative ion
(<inline-formula><mml:math id="M506" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>25.6 kcal mol<inline-formula><mml:math id="M507" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>).</p>
      <p id="d1e6268">The temperature dependence of cluster formation is shown in Fig. 8 for the
positive ion clusters. The blue and brown solid lines represent the needed
<inline-formula><mml:math id="M508" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> for evaporation–collision equilibrium at 0.3 and 1 pptv HOM
mixing ratio, respectively, calculated as described by Ortega et al. (2012). The markers show the calculated
formation enthalpies <inline-formula><mml:math id="M509" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> for each of the possible clusters. For all
cases, the trend shows an evident decrease in <inline-formula><mml:math id="M510" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> with decreasing
temperature, with a correspondingly reduced evaporation rate.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p id="d1e6303">Quantum chemical calculations of Gibbs free energies for cluster
formation at <inline-formula><mml:math id="M511" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25, 5 and 25 <inline-formula><mml:math id="M512" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. Solid lines represent the required
<inline-formula><mml:math id="M513" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> for equilibrium between evaporation and collision rates at 0.3 and
1 pptv of the HOM mixing ratio, respectively. Markers show the <inline-formula><mml:math id="M514" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> for
each cluster (organic core clustered with NH<inline-formula><mml:math id="M515" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>) at the three temperatures.
C<inline-formula><mml:math id="M516" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M517" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M518" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (black circles) represent the monomer,
C<inline-formula><mml:math id="M519" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M520" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M521" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (red circles) represent the covalently bound
dimer, C<inline-formula><mml:math id="M522" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M523" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M524" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M525" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> (green circles) represent the
dimer formed by the clustering of two monomers and C<inline-formula><mml:math id="M526" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M527" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M528" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M529" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
(purple circles) denote the preferential pathway for the trimer cluster (see Table 3).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/65/2018/acp-18-65-2018-f08.pdf"/>

        </fig>

      <?pagebreak page75?><p id="d1e6494"><?xmltex \hack{\newpage}?>At all three temperatures, the monomer cluster C<inline-formula><mml:math id="M530" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M531" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M532" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
falls well below the equilibrium lines, indicating high
stability. Even though the difference between <inline-formula><mml:math id="M533" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 and 25 <inline-formula><mml:math id="M534" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C is just
<inline-formula><mml:math id="M535" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.6 kcal mol<inline-formula><mml:math id="M536" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in free energy, it is enough to produce a substantial
difference in the intensity of the band, increasing the signal at least
8-fold at <inline-formula><mml:math id="M537" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M538" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (as discussed in Sect. 3.2). In the case of the dimers, we consider the
possibility of their formation by collision of a monomer C<inline-formula><mml:math id="M539" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M540" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M541" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
with another C<inline-formula><mml:math id="M542" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> (resulting in a C<inline-formula><mml:math id="M543" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M544" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M545" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M546" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> cluster) or the dimer as
C<inline-formula><mml:math id="M547" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M548" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M549" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> cluster. The calculations show clearly that the
cluster C<inline-formula><mml:math id="M550" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M551" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M552" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M553" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> is not stable at any
of the three temperatures (green line). In contrast, the covalently bound
C<inline-formula><mml:math id="M554" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> forms very stable positive and negative ion clusters (see
Table 3). Trimers are mainly observed at lower
temperatures. Since the C<inline-formula><mml:math id="M555" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M556" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M557" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M558" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> cluster
is not very stable, we discard the possibility of a trimer formation of the
type C<inline-formula><mml:math id="M559" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M560" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M561" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M562" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M563" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. Thus, the trimer is
likely the combination of a monomer and a covalently bound dimer
(C<inline-formula><mml:math id="M564" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M565" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M566" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NH<inline-formula><mml:math id="M567" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>). According to our calculations
(Table 3) the preferred evaporation path for this
cluster is the loss of C<inline-formula><mml:math id="M568" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> rather than the evaporation of
C<inline-formula><mml:math id="M569" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>. Therefore, we have chosen to represent only this path in Fig. 8.
The <inline-formula><mml:math id="M570" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> of this cluster crosses the evaporation–condensation
equilibrium around 5 and 14 <inline-formula><mml:math id="M571" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for a HOM mixing
ratio of 0.3 and 1 pptv, respectively, in good agreement with the
observed signal increase of the trimer at <inline-formula><mml:math id="M572" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M573" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (Fig. 3a–c).
It is important to note that, due to the uncertainty in the calculations,
estimated to be <inline-formula><mml:math id="M574" display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 2 kcal mol<inline-formula><mml:math id="M575" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, we do not consider the crossing as an
exact reference.</p>
      <p id="d1e6924">The <inline-formula><mml:math id="M576" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> of the negative ion clusters, which are also presented in
Table 3, decrease similarly to the positive ion
clusters by around 2 kcal mol<inline-formula><mml:math id="M577" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> between 25 and <inline-formula><mml:math id="M578" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25 <inline-formula><mml:math id="M579" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.
The cluster formation energies of the monomer and the dimer with
NO<inline-formula><mml:math id="M580" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> are in agreement with the observed comparable signal
intensity in the spectrum (Fig. 2) in a similar way as the positive ion
clusters. The covalently bonded dimer ion C<inline-formula><mml:math id="M581" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M582" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M583" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
is also more stable compared to the dimer cluster
C<inline-formula><mml:math id="M584" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M585" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M586" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M587" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, suggesting that the observed
composition results from covalently bonded dimers clustering with
NO<inline-formula><mml:math id="M588" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> rather than two individual C<inline-formula><mml:math id="M589" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> clustering to form a dimer.</p>
      <p id="d1e7065">The formation of a covalently bonded trimer seems unlikely, so the formation
of highly oxygenated molecules is restricted to the monomer and dimer
region. The trimer could result from the clustering of C<inline-formula><mml:math id="M590" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> and C<inline-formula><mml:math id="M591" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>
species. Similarly, and based on the C<inline-formula><mml:math id="M592" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> pattern observed in Fig. 1b,
we believe that the formation of the tetramer corresponds to the
collision of two dimers. No calculations were done for this case due to the
complexity related to the sizes of the molecules, which prevents feasible
high-level quantum chemical calculations.</p>
      <p id="d1e7095">Finally, a comparison of the <inline-formula><mml:math id="M593" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> values as presented in
Table 3 confirms the expected higher stability of
charged clusters compared to neutral clusters, decreasing the evaporation
rate of the nucleating clusters and enhancing new particle formation.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusions</title>
      <p id="d1e7115">Ions observed during pure biogenic ion-induced nucleation were comprised of
mainly organics clustered with NO<inline-formula><mml:math id="M594" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and NH<inline-formula><mml:math id="M595" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> and to a
lesser extent charged organic molecules only or organics clustered with
HNO<inline-formula><mml:math id="M596" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>NO<inline-formula><mml:math id="M597" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. We found good correspondence between the negative
ions measured in CLOUD and those observed in the boreal forest of
Hyytiälä. The observed similarity in the composition of the HOMs in
the monomer and dimer region during new-particle formation experiments at
CLOUD suggests that pure biogenic nucleation might be possible during nighttime if the condensation sink is sufficiently low – i.e., comparable to that
in the CLOUD chamber, where the wall loss rate for H<inline-formula><mml:math id="M598" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>SO<inline-formula><mml:math id="M599" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> is
1.8 <inline-formula><mml:math id="M600" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M601" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M602" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Kirkby et
al., 2016). The positive mass<?pagebreak page76?> spectrum showed a distinctive pattern
corresponding to progressive addition of dimers (C<inline-formula><mml:math id="M603" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>), up to cluster
sizes in the range of stable small particles.</p>
      <p id="d1e7222">Temperature strongly influenced the composition of the detected molecules in
several ways. With increasing temperature, a higher oxygen content (O : C
ratio) in the molecules was observed in both the positive and the negative
mode. This indicates an increase in the autoxidation rate of peroxy radicals,
which is in competition with their bimolecular termination reactions with
HO<inline-formula><mml:math id="M604" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and RO<inline-formula><mml:math id="M605" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>.</p>
      <p id="d1e7243">A broader range of organic molecules was found to form clusters with
NH<inline-formula><mml:math id="M606" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> than with NO<inline-formula><mml:math id="M607" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. Quantum chemical calculations using
simplified molecules show that NH<inline-formula><mml:math id="M608" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> preferably forms a hydrogen
bond with a carbonyl group independently of other functional groups nearby.
The addition of a second hydrogen bond was found to increase the cluster
stability substantially. Thus, the C<inline-formula><mml:math id="M609" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> ions are the more stable ion
clusters as they can form more easily two hydrogen bonds with
NH<inline-formula><mml:math id="M610" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>. Although molecules with low oxygen content were measured in
the C<inline-formula><mml:math id="M611" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> band (1–4 oxygen atoms), only the molecules with O <inline-formula><mml:math id="M612" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C <inline-formula><mml:math id="M613" display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.4
seem to be able to combine to form larger clusters.</p>
      <p id="d1e7327">The quantum chemical calculations showed that the covalently bonded dimer
C<inline-formula><mml:math id="M614" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M615" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M616" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> is also more stable than the dimer
cluster C<inline-formula><mml:math id="M617" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>C<inline-formula><mml:math id="M618" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M619" display="inline"><mml:mo>⋅</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math id="M620" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, suggesting that the
observed composition results from covalently bonded molecules clustering
with NO<inline-formula><mml:math id="M621" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn><mml:mo>-</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> rather than C<inline-formula><mml:math id="M622" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula> clusters.</p>
      <p id="d1e7418">Temperature affected cluster formation by decreasing evaporation rates at
lower temperatures, despite  the lower O : C ratio. In the positive mode a
pronounced growth of clusters by addition of C<inline-formula><mml:math id="M623" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">20</mml:mn></mml:msub></mml:math></inline-formula>–HOMs was observed. The
formation of a C<inline-formula><mml:math id="M624" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula> cluster only appeared at the lowest temperature,
which was supported by quantum chemical calculations. In the negative mode
it appeared as well that the signal of the C<inline-formula><mml:math id="M625" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">30</mml:mn></mml:msub></mml:math></inline-formula> clusters became stronger
with lower temperature. The C<inline-formula><mml:math id="M626" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">40</mml:mn></mml:msub></mml:math></inline-formula> and higher clusters were probably not
seen because of too low sensitivity in this mass range due to the applied
instrumental settings. More measurements are needed to determine if the
cluster growth of positive and negative ions proceeds in a similar or different way.</p>
      <p id="d1e7457">Nucleation and early growth is driven by the extremely low volatility
compounds – i.e., dimers and monomers of high O : C ratios (Tröstl et al.,
2016). Here, we observe a reduction of the autoxidation rate leading to
oxidation products with lower O : C ratios with decreasing temperature. We
expect that this is accompanied by a reduction of nucleation rates. However,
a lower temperature reduces evaporation rates of clusters and thereby
supports nucleation. The relative magnitude of these compensating effects
will be subject of further investigations.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e7465">Data related to this article are available online at <ext-link xlink:href="https://doi.org/10.5281/zenodo.1133985" ext-link-type="DOI">10.5281/zenodo.1133985</ext-link>.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e7474">The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e7480">We would like to thank CERN for supporting CLOUD with important technical and
financial resources, and for providing a particle beam from the CERN Proton
Synchrotron. We also thank P. Carrie, L.-P. De Menezes, J. Dumollard, K. Ivanova,
F. Josa, I. Krasin, R. Kristic, A. Laassiri, O. S. Maksumov, B. Marichy,
H. Martinati, S. V. Mizin, R. Sitals, A. Wasem and M. Wilhelmsson
for their important contributions to the experiment. This research has
received funding from the EC Seventh Framework Programme (Marie Curie Initial
Training Network CLOUD-ITN no. 215072, MC-ITN CLOUD-TRAIN no. 316662,
the ERC-Starting grant MOCAPAF no. 57360, the ERC-Consolidator grant
NANODYNAMITE no. 616075 and ERC-Advanced grant ATMNUCLE no. 227463),
European Union's Horizon 2020 research and innovation programme under the
Marie Skłodowska-Curie grant agreement no. 656994, the PEGASOS project funded
by the European Commission under the Framework Programme 7
(FP7-ENV-2010-265148), the German Federal Ministry of Education and Research
(project nos. 01LK0902A and 01LK1222A), the Swiss National Science Foundation
(project nos. 200020_152907, 206021_144947 and
20FI20_159851), the Academy of Finland (Center of Excellence
project no. 1118615), the Academy of Finland (135054, 133872, 251427, 139656,
139995, 137749, 141217, 141451, 299574), the Finnish Funding Agency for
Technology and Innovation, the Väisälä Foundation, the Nessling
Foundation, the University of Innsbruck research grant for young scientists
(Cluster Calibration Unit), the Portuguese Foundation for Science and
Technology (project no. CERN/FP/116387/2010), the Swedish Research Council,
Vetenskapsrådet (grant 2011-5120), the Presidium of the Russian Academy
of Sciences and Russian Foundation for Basic Research (grants 08-02-91006-CERN
and 12-02-91522-CERN), the US National Science Foundation
(grants AGS1447056, and AGS1439551), and the Davidow Foundation. We thank the
<italic>tofTools</italic> team for providing tools for mass spectrometry analysis. <?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: Sergey A. Nizkorodov <?xmltex \hack{\newline}?>
Reviewed by: two anonymous referees</p></ack><ref-list>
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    <!--<article-title-html>Influence of temperature on the molecular composition of ions  and charged clusters during pure biogenic nucleation</article-title-html>
<abstract-html><p>It was recently shown by the CERN CLOUD experiment that biogenic highly
oxygenated molecules (HOMs) form particles under atmospheric conditions in
the absence of sulfuric acid, where ions enhance the nucleation rate by 1–2 orders of magnitude. The biogenic HOMs were produced from ozonolysis of
<i>α</i>-pinene at 5&thinsp;°C. Here we extend this study to compare the
molecular composition of positive and negative HOM clusters measured with
atmospheric pressure interface time-of-flight mass spectrometers (APi-TOFs),
at three different temperatures (25, 5 and −25&thinsp;°C). Most negative HOM clusters include a
nitrate (NO<sub>3</sub><sup>−</sup>) ion, and the spectra are similar to those seen in the nighttime
boreal forest. On the other hand, most positive HOM clusters include an
ammonium (NH<sub>4</sub><sup>+</sup>) ion, and the spectra are characterized by mass bands
that differ in their molecular weight by  ∼ &thinsp;20 C atoms,
corresponding to HOM dimers. At lower temperatures the average oxygen to
carbon (O&thinsp;:&thinsp;C) ratio of the HOM clusters decreases for both polarities,
reflecting an overall reduction of HOM formation with decreasing temperature.
This indicates a decrease in the rate of autoxidation with temperature due to
a rather high activation energy as has previously been determined by quantum
chemical calculations. Furthermore, at the lowest temperature
(−25&thinsp;°C),
the presence of C<sub>30</sub> clusters shows that HOM monomers start to
contribute to the nucleation of positive clusters. These experimental
findings are supported by quantum chemical calculations of the binding
energies of representative neutral and charged clusters.</p></abstract-html>
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