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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-18-6039-2018</article-id><title-group><article-title>The importance of vertical resolution in the free troposphere for modeling
intercontinental plumes</article-title><alt-title>The importance of vertical resolution in the free troposphere</alt-title>
      </title-group><?xmltex \runningtitle{The importance of vertical resolution in the free troposphere}?><?xmltex \runningauthor{J. Zhuang et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Zhuang</surname><given-names>Jiawei</given-names></name>
          <email>jiaweizhuang@g.harvard.edu</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Jacob</surname><given-names>Daniel J.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Eastham</surname><given-names>Sebastian D.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2476-4801</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>School of Engineering and Applied Sciences, Harvard University,
Cambridge, MA 02138, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Laboratory for Aviation and the Environment, Department of Aeronautics
and Astronautics, Massachusetts Institute of Technology, Cambridge, MA
02139, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Jiawei Zhuang (jiaweizhuang@g.harvard.edu)</corresp></author-notes><pub-date><day>2</day><month>May</month><year>2018</year></pub-date>
      
      <volume>18</volume>
      <issue>8</issue>
      <fpage>6039</fpage><lpage>6055</lpage>
      <history>
        <date date-type="received"><day>4</day><month>December</month><year>2017</year></date>
           <date date-type="rev-request"><day>8</day><month>December</month><year>2017</year></date>
           <date date-type="rev-recd"><day>10</day><month>April</month><year>2018</year></date>
           <date date-type="accepted"><day>10</day><month>April</month><year>2018</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>
      <abstract>
    <p id="d1e104">Chemical plumes in the free troposphere can preserve their identity for more
than a week as they are transported on intercontinental scales. Current
global models cannot reproduce this transport. The plumes dilute far too
rapidly due to numerical diffusion in sheared flow. We show how model
accuracy can be limited by either horizontal resolution (<inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>) or
vertical resolution (<inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>). Balancing horizontal and vertical numerical
diffusion, and weighing computational cost, implies an optimal grid
resolution ratio (<inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M4" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>)<inline-formula><mml:math id="M6" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">opt</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M7" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1000
for simulating the plumes. This is considerably higher than current global
models (<inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M9" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M11" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20) and explains the rapid plume
dilution in the models as caused by insufficient vertical resolution. Plume
simulations with the Geophysical Fluid Dynamics Laboratory Finite-Volume
Cubed-Sphere Dynamical Core (GFDL-FV3) over a range of
horizontal and vertical grid resolutions confirm this limiting behavior. Our
highest-resolution simulation (<inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M13" display="inline"><mml:mo>≈</mml:mo></mml:math></inline-formula> 25 km, <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M15" display="inline"><mml:mo>≈</mml:mo></mml:math></inline-formula> 80 m) preserves the maximum mixing ratio in the plume to
within 35 % after 8 days in strongly sheared flow, a drastic improvement
over current models. Adding free tropospheric vertical levels in global
models is computationally inexpensive and would also improve the simulation
of water vapor.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e247">Global transport of pollution mainly takes place in the free troposphere
where winds are strong and pollutant lifetimes are long. The free troposphere
extends from the top of the planetary boundary layer (PBL, typically 2 km
altitude) up to the tropopause. It is a prevailingly stable environment with
strong wind shear. Much of pollution transport in the free troposphere takes
place as plumes, typically <inline-formula><mml:math id="M16" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 km thick in the vertical, that fan out
horizontally over a <inline-formula><mml:math id="M17" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1000 km scale and may preserve their coherent
structure for up to 1–2 weeks (Newell et al., 1999; Stoller et al., 1999;
Thouret et al., 2000; Heald et al., 2003; Crawford et al., 2004; Liang et
al., 2007). Global Eulerian models dilute these plumes too rapidly because of
numerical diffusion introduced by the advection schemes. Although the
high-order advection schemes used in models are highly accurate under uniform
flows, the accuracy breaks down in realistic sheared/stretched flows where
plumes filament, and the ability to resolve cross-plume gradients is rapidly
compromised (Rastigejev et al., 2010). Eastham and Jacob (2017) found that
increasing the horizontal resolution of models to address this problem is
only of marginal benefit and suggested that the main limitation is vertical
resolution. Here, we use the Geophysical Fluid Dynamics Laboratory
Finite-Volume Cubed-Sphere Dynamical Core (GFDL-FV3), a global 3-D dynamical
core that explicitly solves atmospheric dynamic equations, to understand the
horizontal and vertical resolution requirements for models to simulate
global-scale plume transport.</p>
      <p id="d1e264">Preserving the structure of chemical plumes during global-scale transport is
important for representing non-linear chemical and aerosol processes (Wild
and Prather, 2006) and for quantifying intercontinental influences on surface
air (Lin et al., 2012; Zhang et al., 2014). For example, models are unable to
capture the plumes of Asian ozone pollution frequently observed at 2–5 km
altitude over California (Hudman et al., 2004; Nowak et al., 2004). Air
quality agencies<?pagebreak page6040?> in California have claimed that they cannot meet the current
surface ozone standard because of this Asian pollution influence (Neuman et
al., 2012). Models find Asian pollution influence in surface air over
California to be only a few ppb (Goldstein et al., 2004; Zhang et al., 2008),
but since they cannot resolve the structure of Asian pollution plumes
crossing the Pacific they have little credibility.</p>
      <p id="d1e267">General circulation models (GCMs) used for global simulations of atmospheric
dynamics including meteorological data assimilation have increased their
resolutions 1000-fold over the past 50 years, buoyed by the growth of
computing power (Balaji, 2015). Increasing horizontal resolution has been
privileged, and attention to vertical resolution has mainly focused on the
PBL. For example, assimilated meteorological data produced operationally by
the NASA Goddard Earth Observing System (GEOS) started in the 1990s with
2<inline-formula><mml:math id="M18" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M19" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2.5<inline-formula><mml:math id="M20" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> horizontal resolution and 20 vertical
levels (GEOS-1; Schubert et al., 1993). Today, the operational GEOS forward
processing (GEOS-FP) product uses a cubed-sphere C720 horizontal resolution
(<inline-formula><mml:math id="M21" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 0.125<inline-formula><mml:math id="M22" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>) and 72 vertical levels (Lucchesi, 2017). This
represents a 20-fold increase in horizontal resolution but only a 4-fold
increase in vertical resolution. In the free troposphere at 2–10 km
altitude, the vertical resolution has increased by only a factor of 2 from
GEOS-1 (8 levels) to GEOS-FP (15 levels). In NOAA's Next Generation Global
Prediction System (NGGPS) program, several state-of-the-science dynamical
cores are tested at horizontal resolutions of 12 km and 3 km but only with
128 vertical layers – not trying to improve on the current generation of
models (Michalakes et al., 2015). ECMWF's Integrated Forecasting System (IFS)
increased its horizontal resolution from 16 km to 9 km in 2016 but its
vertical resolution remains at 137 levels (Haiden et al., 2016). On the
Sunway TaihuLight supercomputer, a dynamical core is tested at an
unprecedentedly high global horizontal resolution of 488 m but with only 128
vertical layers (Yang et al., 2016).</p>
      <p id="d1e311">There are important reasons why horizontal resolution is a priority in GCMs,
as reviewed by Haarsma et al. (2016). Increasing horizontal resolution
improves the simulation of large-scale features such as the El
Niño–Southern Oscillation (ENSO), as well as small-scale features such
as tropical cyclones. It has been argued that increasing vertical resolution
should follow suit. Pecnick and Keyser (1989) recommend an optimal
relationship between horizontal and vertical grid spacing to resolve fronts:
          <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M23" display="block"><mml:mrow><mml:msub><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mi>s</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M24" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula> is the frontal slope, and <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> are the
horizontal and vertical grid spacings, respectively. <inline-formula><mml:math id="M27" display="inline"><mml:mi>s</mml:mi></mml:math></inline-formula> typically ranges
from 0.005 to 0.02 for synoptic-scale fronts, so the optimal <inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M29" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> would be in the range 50–200. Lindzen and
Fox-Rabinovitz (1989) recommend the following equation for resolving quasi-geostrophic
flows:

              <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M31" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>N</mml:mi><mml:mi>f</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

        where <inline-formula><mml:math id="M32" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> is the Brunt–Väisälä frequency and <inline-formula><mml:math id="M33" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> is the Coriolis
parameter. <inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>/</mml:mo><mml:mi>f</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M35" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100 is Prandtl's ratio, measuring the ratio between
the horizontal and vertical scales of geostrophic flows (Dritschel and
McKiver, 2015). Based on both Eqs. (1) and (2), <inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M37" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>
in GCMs is recommended to be of the order of 100 (Chapter 3.2.1 of Warner,
2010). The current generation of GCMs with <inline-formula><mml:math id="M39" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M40" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 km and
<inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M42" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5 km (thus, <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M44" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M46" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20) in
the free troposphere is beginning to fall outside that range.</p>
      <p id="d1e573">Preserving chemical plume gradients in the free troposphere may have its own
resolution requirements. In idealized tests by Kent et al. (2012), where
plumes were advected by a solid-body rotation flow coupled with vertical
oscillation, doubling the vertical resolution brought down the numerical
diffusion error by more than half. Numerical diffusion of plumes is
considerably more severe in realistic sheared/stretched atmospheric flows
(Rastigejev et al., 2010). Eastham and Jacob (2017) used GEOS-FP
meteorological data with 0.25<inline-formula><mml:math id="M47" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M48" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.3125<inline-formula><mml:math id="M49" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> horizontal
resolution and 72 vertical levels to drive the offline GEOS-Chem chemical
transport model (CTM) with horizontal resolutions ranging from
0.25<inline-formula><mml:math id="M50" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M51" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.3125<inline-formula><mml:math id="M52" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> to 4<inline-formula><mml:math id="M53" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M54" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 5<inline-formula><mml:math id="M55" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>,
all with 72 vertical levels and using conservative regridding of the native
meteorological fields for the coarser simulations. They found that increasing
the horizontal resolution is effective in preserving plumes in 2-D
simulations (horizontal-only, no vertical dimension) but fails with 3-D
plumes because the coarse vertical resolution of the native GEOS-FP data
incurs large vertical numerical diffusion. They could not increase the
vertical resolution in the GEOS-FP environment and thus could not explore the
issue further.</p>
      <p id="d1e652">Solution of the advection equation in models should conserve the mixing ratio
for the transported species (mass of species per unit mass of air) but
should also account for the filamentation of plumes down to the millimeter
Kolmogorov scale where molecular diffusion takes over to complete the
dissipation process. An Eulerian model computing advection with no error
would underestimate the actual diffusion process if it did not account for
subgrid filamentation, which is often parameterized by adding a turbulent
diffusion term to the advection equation. D'Isidoro et al. (2010) examined
the relative importance of numerical and actual (physical) turbulent
horizontal diffusion in air quality models and found that numerical diffusion
dominates for grid cell sizes larger than <inline-formula><mml:math id="M56" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 km. Numerical diffusion
is also expected to dominate in the vertical because the prevailing stable
conditions in the free troposphere suppress vertical turbulence. Thus, the
transport of intercontinental plumes in global models incurs numerical
diffusion far in excess of physical turbulent diffusion. This is manifest in
the failure of the models to preserve the plumes.</p>
      <?pagebreak page6041?><p id="d1e662"><?xmltex \hack{\newpage}?>Increasing free tropospheric vertical resolution in GCMs would also have
meteorological implications for the transport of water vapor, similar to
chemical plumes (Tompkins and Emanuel, 2000; Pope et al., 2001). Water vapor
in the free troposphere is layered in the same way as other chemical species
(Newell et al., 1999; Thouret et al., 2000). An early intercomparison of GCMs
found that the radiative effect of water vapor is relatively insensitive to
model vertical resolution (Ingram, 2002), which might explain the lack of
attention to this issue. However, all GCMs in that intercomparison had coarse
resolution that would make them inadequate for addressing the problem
properly.</p>
      <p id="d1e666">Here, we use the GFDL-FV3 dynamical core as a computationally flexible
framework to explore the horizontal and vertical resolution requirements for
free tropospheric plume transport. The dynamical core solves the atmospheric
dynamics equations with no complications from physical parameterizations such
as boundary layer mixing or deep convection. In a full GCM, one would need to
account for the vertical resolution dependence of physical parameterization
schemes (Lane et al., 2000; Kent et al., 2012). In a dry dynamical core, we
are free to choose any horizontal and vertical resolutions to solve the
dynamics equations. A realistic sheared/stretched atmospheric flow can be
simulated in a dry dynamical core by triggering baroclinic instability
(Jablonowski and Williamson, 2006).</p>
</sec>
<sec id="Ch1.S2">
  <title>Theoretical analysis</title>
<sec id="Ch1.S2.SS1">
  <title>Numerical diffusion and its relation to grid resolution</title>
      <p id="d1e680">Numerical diffusion for a given species in a Eulerian chemical transport
model is caused by the error when numerically solving the 3-D advection
equation:

                <disp-formula id="Ch1.E3" content-type="numbered"><mml:math id="M57" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>v</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>w</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math id="M58" display="inline"><mml:mi>C</mml:mi></mml:math></inline-formula> is the species mixing ratio (kilogram of species per kilogram of
air), and (<inline-formula><mml:math id="M59" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M60" display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M61" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>) are the horizontal and vertical wind components.
Exact solution of the advection equation translates the mixing ratio downwind
while conserving its magnitude, even in divergent flow (Chapter 7.2 of
Brasseur and Jacob, 2017). However, the discretization of the model grid
requires a numerical solution. Numerical schemes in models typically use
high-order approximations to the upstream derivatives. But a first-order
scheme allows here a simple analysis, and is relevant to our problem because
higher-order schemes degrade to first order as a plume gets stretched to be
resolved by only a few grid cells (Huynh, 1997; Rastigejev et al., 2010).</p>
      <?pagebreak page6042?><p id="d1e784">Using a 3-D first-order upwind scheme with no cross terms, applied to a grid
cell (<inline-formula><mml:math id="M62" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M63" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M64" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>) with time level <inline-formula><mml:math id="M65" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> and wind vector components (<inline-formula><mml:math id="M66" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula>,
<inline-formula><mml:math id="M67" display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M68" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>), Eq. (3) is approximated by

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M69" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>C</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>C</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hspace*{5mm}}?><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>C</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>C</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hspace*{5mm}}?><mml:mo>+</mml:mo><mml:mi>v</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>C</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>C</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E4"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hspace*{5mm}}?><mml:mo>+</mml:mo><mml:mi>w</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>C</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>C</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            Here, we have assumed that the wind components are positive so that the
first-order approximation of the upwind derivatives is given by backward
finite difference. Let us apply the Taylor expansion to each term in Eq. (4);
for example,

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M70" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>C</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mi>C</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E5"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><?xmltex \hack{\hspace*{5mm}}?><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>o</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            which yields for that term

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M71" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>-</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>C</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>C</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E6"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hspace*{5mm}}?><mml:mo>=</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>o</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            The right-hand side of Eq. (6) is the truncation error between the
<inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mi>u</mml:mi><mml:mo>(</mml:mo><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M73" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> term in the true equation (Eq. 3) and its
numerical approximation in Eq. (4). Adding up the error for each term in
Eq. (3), we obtain the total truncation error <inline-formula><mml:math id="M75" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula>:

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M76" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>v</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>w</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E7"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hspace*{5mm}}?><mml:mo>+</mml:mo><mml:mi>o</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            In typical truncation error analysis, terms like <inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> are important as
indicators of the order of accuracy of the scheme, while terms like
<inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M79" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> are just coefficients. The scheme here
is first order because the error decreases linearly with <inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>. The
modified equation approach (Chapter 3.3.2 of Durran, 2010; Warming and Hyett,
1974) provides a different view. We can modify the advection equation (Eq. 3)
to add the error terms from Eq. (7) on the right-hand side:

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M82" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>v</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>w</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E8"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hspace*{5mm}}?><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>v</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>w</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            Using the same scheme (Eq. 4) to solve this modified equation, the error
becomes second order, i.e., decreases quadratically (<inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>):

                <disp-formula id="Ch1.E9" content-type="numbered"><mml:math id="M84" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mi>o</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          Thus, we can say that, instead of representing the original advection
equation (Eq. 3), the numerical scheme (Eq. 4) better represents the
advection–diffusion equation (Eq. 8) with the diffusion term
            <disp-formula id="Ch1.E10" content-type="numbered"><mml:math id="M85" display="block"><mml:mrow><mml:mi>D</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>v</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>w</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          This view is different from Eq. (7) in that terms like
<inline-formula><mml:math id="M86" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M87" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> can now be interpreted as explicit
diffusion in the differential equation while terms like <inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> become
just coefficients. The magnitude of the diffusion term decreases as the
resolution increases, i.e., as the grid spacing <inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> decreases,
bringing the numerical scheme closer to the original equation (Eq. 3).</p>
      <p id="d1e2068">The time derivative (<inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>)<inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M93" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> in
Eq. (10) is not a standard diffusion term and does not have a clear physical
meaning, but we can show following Odman (1997) that in the 1-D upwind scheme
it is approximated by the spatial derivative (see Appendix A for proof):
            <disp-formula id="Ch1.E11" content-type="numbered"><mml:math id="M95" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>≈</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>=</mml:mo><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> is the Courant–Friedrichs–Lewy
(CFL) number. Eulerian advection schemes require <inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:mfenced close="|" open="|"><mml:mi mathvariant="italic">α</mml:mi></mml:mfenced><mml:mo>≤</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>
for stability (CFL condition). This means, as long as the CFL condition is
satisfied, that the time discretization error will not be larger than the
spatial discretization error and will not limit the overall accuracy. We omit
it in what follows and only consider
            <disp-formula id="Ch1.E12" content-type="numbered"><mml:math id="M98" display="block"><mml:mrow><mml:mi>D</mml:mi><mml:mo>≈</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>v</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>w</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          If the horizontal grid spacings (<inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:math></inline-formula>) decrease while the
vertical grid spacing (<inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>) remains the same, we will eventually reach
a point where
            <disp-formula id="Ch1.E13" content-type="numbered"><mml:math id="M102" display="block"><mml:mrow><mml:mfenced close="|" open="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mfenced close="|" open="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>v</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>≪</mml:mo><mml:mfenced close="|" open="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>w</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mspace linebreak="nobreak" width="0.125em"/></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          which implies
            <disp-formula id="Ch1.E14" content-type="numbered"><mml:math id="M103" display="block"><mml:mrow><mml:mi>D</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>≈</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>w</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          Under this condition, the numerical diffusion is independent of the
horizontal resolution and only depends on the vertical resolution.
Equation (14) explains why Eastham and Jacob (2017) found that increasing the
horizontal resolution beyond 1<inline-formula><mml:math id="M104" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M105" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1<inline-formula><mml:math id="M106" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> in their model
did not lead to further improvement in plume preservation. Similarly, if the
vertical resolution increases, the numerical diffusion will eventually be
determined by the horizontal resolution.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Balancing horizontal and vertical numerical diffusion</title>
      <?pagebreak page6043?><p id="d1e2535">To avoid being limited by one dimension, the horizontal and vertical
diffusion terms in Eq. (12) should have similar magnitude:
            <disp-formula id="Ch1.E15" content-type="numbered"><mml:math id="M107" display="block"><mml:mrow><mml:mfenced open="|" close="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mfenced close="|" open="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>v</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>≈</mml:mo><mml:mfenced close="|" open="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>w</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          There is general isotropy in the horizontal dimensions; thus, we have
            <disp-formula id="Ch1.E16" content-type="numbered"><mml:math id="M108" display="block"><mml:mrow><mml:mfenced close="|" open="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>≈</mml:mo><mml:mfenced close="|" open="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>v</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>y</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          The optimal grid spacing can then be obtained by equating horizontal and
vertical diffusion:
            <disp-formula id="Ch1.E17" content-type="numbered"><mml:math id="M109" display="block"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mfenced close="|" open="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mfenced open="|" close="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>w</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          Rearranging, we obtain an expression for the optimal ratio between
horizontal and vertical grid resolution to balance the effect of numerical
diffusion:
            <disp-formula id="Ch1.E18" content-type="numbered"><mml:math id="M110" display="block"><mml:mrow><mml:msub><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">|</mml:mi><mml:mi>w</mml:mi><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mi mathvariant="normal">|</mml:mi></mml:mrow><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="normal">|</mml:mi><mml:mi>u</mml:mi><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mi mathvariant="normal">|</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          Let <inline-formula><mml:math id="M111" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M112" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> be the horizontal and vertical extents of the plume and <inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> be the change in mixing ratio from the center of the plume to the
background. We have
            <disp-formula id="Ch1.E19" content-type="numbered"><mml:math id="M114" display="block"><mml:mrow><mml:mfenced open="|" close="|"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>≈</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:msup><mml:mi>L</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo><mml:mfenced open="|" close="|"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>≈</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:msup><mml:mi>H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          The above approximation can be obtained by either scale analysis (Chapter 2.4
of Holton, 2004) or a finite-difference approximation at the center of the
plume (<inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>):

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M116" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mrow><mml:mi mathvariant="normal">|</mml:mi><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>≈</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">|</mml:mi><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mi>L</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">|</mml:mi><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mi>L</mml:mi></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi mathvariant="normal">|</mml:mi><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:msup><mml:mi>L</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E20"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:msup><mml:mi>L</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            Placing Eq. (19) into Eq. (18), we get
            <disp-formula id="Ch1.E21" content-type="numbered"><mml:math id="M117" display="block"><mml:mrow><mml:msub><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>w</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi>u</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>L</mml:mi><mml:mi>H</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          Equation (21) means that the optimal ratio of horizontal and vertical grid
resolutions depends on the wind velocity and the plume aspect ratio. To get
an intuition for this, consider two extreme cases: (1) if <inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, i.e., the
3-D advection problem degrades to 2-D, there will be no vertical diffusion
and thus no requirement on the vertical resolution (<inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>→</mml:mo><mml:mi mathvariant="normal">∞</mml:mi></mml:mrow></mml:math></inline-formula>); (2) if <inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:mi>H</mml:mi><mml:mo>→</mml:mo></mml:mrow></mml:math></inline-formula> 0, i.e., the plume is infinitely thin, we will
need infinitely small vertical grids to resolve it (<inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>→</mml:mo></mml:mrow></mml:math></inline-formula> 0). In the real atmosphere with typical large-scale wind speeds <inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:mi>u</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> m s<inline-formula><mml:math id="M123" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> cm s<inline-formula><mml:math id="M125" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and typical plume sizes <inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:mi>L</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:math></inline-formula> km, <inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> km, we get (<inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M129" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula>, larger than the dynamical criteria reviewed in the introduction
(Eqs. 1 and 2). Although this numerical value is little more than an
order-of-magnitude estimate, considering the uncertainty in the individual
terms, it suggests that numerical diffusion of chemical plumes may place
greater restriction on model vertical resolution than atmospheric dynamics.
The estimated plume aspect ratio <inline-formula><mml:math id="M131" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M132" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:math></inline-formula> applies to the bulk of
the plume but might not be appropriate for small filaments. Later in this
paper (Sect. 4.3), we will use numerical simulations to derive (<inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M135" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>)<inline-formula><mml:math id="M137" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">opt</mml:mi></mml:msub></mml:math></inline-formula> and compare it to the result of this simple
theoretical analysis.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Applying computational cost considerations</title>
      <p id="d1e3407">In practice, the trade-off between horizontal resolution (<inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>) and
vertical resolution (<inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>) must be considered in the context of a given
allocation of computational resources. Increasing horizontal resolution by a
factor <inline-formula><mml:math id="M140" display="inline"><mml:mi>m</mml:mi></mml:math></inline-formula> increases the number of grid cells by <inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:msup><mml:mi>m</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, since the increase
is applied to both the <inline-formula><mml:math id="M142" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M143" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> dimensions. In addition, the time step
must generally be decreased by a factor <inline-formula><mml:math id="M144" display="inline"><mml:mi>m</mml:mi></mml:math></inline-formula> to satisfy the CFL condition, so
that the computation cost scales as <inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:msup><mml:mi>m</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>. Increasing vertical resolution
does not generally affect the CFL condition because vertical winds are weak
relative to <inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>. A fixed amount of computation can thus be expressed
by <inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula> (where <inline-formula><mml:math id="M148" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula> is a constant), ignoring the CFL
condition, or by <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>, accounting for the CFL condition.</p>
      <p id="d1e3541">Here, we consider the general problem of minimizing the numerical diffusion
for a given allocation of computational resources and with a trade-off
parameter <inline-formula><mml:math id="M150" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>, where <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> represents equal costs for decreasing <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> represents a quadratic cost of decreasing <inline-formula><mml:math id="M155" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>
(because of corresponding decrease in <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:math></inline-formula>), and <inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> represents a
cubic cost of decreasing <inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> (factoring in the CFL condition):
            <disp-formula id="Ch1.E22" content-type="numbered"><mml:math id="M159" display="block"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi>P</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          From Eqs. (12) and (16), the magnitude of the numerical diffusion term can be
written as
            <disp-formula id="Ch1.E23" content-type="numbered"><mml:math id="M160" display="block"><mml:mrow><mml:mi>D</mml:mi><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>+</mml:mo><mml:mi>B</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M161" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M162" display="inline"><mml:mi>B</mml:mi></mml:math></inline-formula> are coefficients:
            <disp-formula id="Ch1.E24" content-type="numbered"><mml:math id="M163" display="block"><mml:mrow><mml:mi>A</mml:mi><mml:mo>=</mml:mo><mml:mfenced close="|" open="|"><mml:mrow><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>,</mml:mo><mml:mi>B</mml:mi><mml:mo>=</mml:mo><mml:mfenced open="|" close="|"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>w</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          In Sect. 2.2, and following Eq. (21), we estimated <inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mo>/</mml:mo><mml:mi>A</mml:mi><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula> for
typical atmospheric conditions.</p>
      <p id="d1e3784">For a given amount of computing <inline-formula><mml:math id="M165" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>, the optimal <inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M167" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M168" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>
ratio is the one that minimizes the numerical diffusion term <inline-formula><mml:math id="M169" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>. This
minimum is readily found graphically, as illustrated in Fig. 1. In this
figure, the filled contours are isolines of <inline-formula><mml:math id="M170" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> as given by Eq. (23) with
<inline-formula><mml:math id="M171" display="inline"><mml:mi>B</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M172" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula>. The solid lines are the computational trade-offs <inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>. For a given value of <inline-formula><mml:math id="M176" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>,
the numerical diffusion is minimized when the contour lines of <inline-formula><mml:math id="M177" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>(<inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>) and <inline-formula><mml:math id="M180" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>(<inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>) are parallel, i.e., when
their gradients have the same direction:
            <disp-formula id="Ch1.E25" content-type="numbered"><mml:math id="M183" display="block"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>P</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfenced><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>∝</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>D</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          From Eq. (22), <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>P</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M185" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. From Eq. (23),
<inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>D</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mi>A</mml:mi><mml:mo>,</mml:mo><mml:mi>B</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Thus, Eq. (25) becomes
            <disp-formula id="Ch1.E26" content-type="numbered"><mml:math id="M188" display="block"><mml:mrow><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>k</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced><mml:mo>∝</mml:mo><mml:mo>(</mml:mo><mml:mi>A</mml:mi><mml:mo>,</mml:mo><mml:mi>B</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          which yields
            <disp-formula id="Ch1.E27" content-type="numbered"><mml:math id="M189" display="block"><mml:mrow><mml:msub><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>k</mml:mi><mml:mi>B</mml:mi></mml:mrow><mml:mi>A</mml:mi></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          In Sect. 2.2, we implicitly assumed that the computational costs of adjusting
<inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> would be the same, i.e., <inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> in Eq. (22).
Equation (27) is then the same as Eq. (18), and using the same estimate <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mo>/</mml:mo><mml:mi>A</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula> as in Sect. 2.2 yields <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula>.
Accounting for higher computational cost when increasing horizontal
resolution (<inline-formula><mml:math id="M195" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> &gt; 1) results in a higher optimal ratio. The
dashed lines in Fig. 1 show the optimal <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M197" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> ratios
derived for <inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula>. For <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>, we find <inline-formula><mml:math id="M202" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:math></inline-formula>, and for <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> we find (<inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M205" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1500</mml:mn></mml:mrow></mml:math></inline-formula>. It is actually remarkable that the dependence of
this optimal ratio on <inline-formula><mml:math id="M207" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is linear rather than exponential. The reason is
that it is based on the relative contributions of numerical diffusion in the
horizontal vs. vertical directions; if numerical diffusion is caused by a
coarse horizontal grid, then increasing vertical resolution (even if cheap)
will not provide benefit.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e4452">Optimal combination of horizontal and vertical grid resolutions
(<inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>) for minimizing numerical diffusion of chemical
plumes within a given amount of computational resources. Results are from the
theoretical analysis of Sect. 2.3. The filled contours show the magnitude of
the numerical diffusion term <inline-formula><mml:math id="M210" display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> from Eq. (23) as a function of <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:mi>B</mml:mi><mml:mo>/</mml:mo><mml:mi>A</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">500</mml:mn></mml:mrow></mml:math></inline-formula>. The solid lines indicate a fixed amount of
computational resources (<inline-formula><mml:math id="M214" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>) in the trade-off between horizontal and
vertical resolution, either using a fixed time step (<inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>) or accounting for the CFL condition (<inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>). The
dashed lines from Eq. (27) indicate the corresponding optimal <inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M218" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> ratios to minimize numerical diffusion.</p></caption>
          <?xmltex \igopts{width=170.716535pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/6039/2018/acp-18-6039-2018-f01.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S3">
  <title>Atmospheric plume simulation in the GFDL-FV3 dynamical core</title>
      <p id="d1e4609">We conduct an 8-day simulation of a chemically inert plume in the GFDL-FV3
(<uri>https://www.gfdl.noaa.gov/fv3/</uri>, “FV3” hereinafter) global 3-D
dynamical core, with realistic sheared/stretched turbulent flow generated
through a baroclinic instability test. FV3 uses the cubed-sphere geometry of
Putman and Lin (2007) and the vertically Lagrangian discretization of
Lin (2004). It includes a capability for transporting inert chemicals
(“tracers”). The horizontal tracer transport algorithm is a high-dimension
extension of the third-order piecewise parabolic method (PPM) (Lin and Rood,
1996) but is formally second-order accurate due to operator splitting between
the two dimensions (Ullrich et al., 2010). The cubed-sphere grid avoids the
polar singularity in the regular latitude–longitude grid and therefore
permits efficient global high-resolution simulations on massively parallel
machines. An intuitive explanation of the cubed-sphere geometry and
resolution notation can be found<?pagebreak page6044?> at
<uri>http://acmg.seas.harvard.edu/geos/cubed_sphere.html</uri>. FV3 has been
implemented as a dynamical core in many global models including the NASA
Goddard Earth Observing System (GEOS-5), the NCAR Community Earth System
Model (CESM), the NCEP Global Forecast System (GFS) and the high-performance
version of GEOS-Chem (GCHP) (see
<uri>https://www.gfdl.noaa.gov/fv3/fv3-applications/</uri>).</p>
      <p id="d1e4621">Numerical diffusion takes place in FV3 during Eulerian horizontal advection
(due to finite differencing of the spatial derivatives) and during vertical
remapping of the Lagrangian surfaces to the model grid (due to interpolation
error). Vertical remapping can use a larger time step than horizontal
advection, but the interpolation scheme can be very diffusive if monotonicity
is required. Our own comparisons of the vertically Lagrangian scheme to a
high-order Eulerian scheme show that they have similar vertical diffusion
(Appendix B).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p id="d1e4626">Atmospheric flow generated by the FV3 dynamical core in a baroclinic
instability test, 16 days after initialization of the test and 8 days after
the release of the chemical plume. Shown are surface pressures, 700 hPa flow
streamlines and Lyapunov exponents <inline-formula><mml:math id="M220" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> measuring the stretching of the
flow. Panel <bold>(a)</bold> shows results from the lowest horizontal resolution (C48,
<inline-formula><mml:math id="M221" display="inline"><mml:mo>≈</mml:mo></mml:math></inline-formula> 200 km) and <bold>(b)</bold> shows results from the highest
horizontal resolution (C384, <inline-formula><mml:math id="M222" display="inline"><mml:mo>≈</mml:mo></mml:math></inline-formula> 25 km), both with 20 vertical
levels (L20). Increasing vertical resolution has little effect on the
dynamics, as discussed in the text.</p></caption>
        <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/6039/2018/acp-18-6039-2018-f02.png"/>

      </fig>

      <p id="d1e4662">An effective way to emulate realistic turbulent atmospheric flows in a
dynamical core is the baroclinic instability test, originally developed by
Jablonowski and Williamson (2006) as a dynamical core benchmark and
subsequently used in tracer transport simulations (Jablonowski et al., 2008;
Ullrich et al., 2016). Baroclinic instability is the main mechanism for
cyclogenesis in midlatitudes. Instability can be triggered by applying a
small perturbation to an initial reference state in geostrophic and
hydrostatic balance. Starting from the initial perturbation, the baroclinic
wave typically becomes observable around model day 4 and generates strong
cyclones by day 8 (Jablonowski and Williamson, 2006).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p id="d1e4668">The 8-day simulation of plume transport in the FV3 dynamical core at
C384L160 resolution (<inline-formula><mml:math id="M223" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 25 km in horizontal and 6 hPa in vertical).
The plume is initialized at 625 hPa over Alaska with a normalized mixing
ratio of unity over a domain 1000 <inline-formula><mml:math id="M224" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1000 km<inline-formula><mml:math id="M225" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> in the horizontal
and 50 hPa thickness in the vertical. Panel <bold>(a)</bold> shows the vertical and
longitudinal transport of the plume as the meridionally averaged mixing
ratio. Panel <bold>(b)</bold> shows the horizontal transport of the plume as
column-averaged mixing ratios. Because mixing ratios are plotted here as
meridional or vertical averages, the values are much lower than the actual
values in the plume.</p></caption>
        <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/6039/2018/acp-18-6039-2018-f03.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p id="d1e4708">Plume dilution due to numerical diffusion at different model grid
resolutions. The plume is released in the free troposphere at northern
midlatitudes with an initial mixing ratio of unity. Plume dilution is
measured by the decrease in the maximum mixing ratio as a function of time.
Model horizontal resolution is defined by a cubed-sphere grid ranging from
C48 (<inline-formula><mml:math id="M226" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 200 km) to C384 (<inline-formula><mml:math id="M227" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 25 km). Vertical resolution is
defined by an equally spaced isobaric grid ranging from L20 (20 levels, each
50 hPa thick) to L160 (160 levels, each 6 hPa thick).</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/6039/2018/acp-18-6039-2018-f04.png"/>

      </fig>

      <p id="d1e4731">Here, we first run the baroclinic instability simulation for 8 days so that
cyclones become intense enough for realistic flow shearing/stretching. We
then initialize an inert tracer plume with uniform mixing ratio at the
location where flow stretching is the strongest. This initial plume extends
horizontally and vertically over a number of grid cells depending on the
grid resolution, as detailed below. We continue the simulation for 8 days
and diagnose the transport of the plume. Tracer transport involves solely
advection. There is no subgrid turbulent diffusion or convection.</p>
      <p id="d1e4734">We conduct simulations at horizontal cubed-sphere resolutions ranging from
C48 (<inline-formula><mml:math id="M228" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 200 km) to C384 (<inline-formula><mml:math id="M229" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 25 km) and vertical resolutions
ranging from L20 (20 vertical layers) to L160. The vertical layers are
equally spaced in pressure from the surface (1000 hPa in the reference
state) to 1 hPa altitude. Thus, L20 has a vertical resolution of 50 hPa,
corresponding to 0.6 km in the free troposphere at 600 hPa, which is
roughly the vertical resolution of the GEOS-FP product used in the current
version of GEOS-Chem. L160 has a vertical resolution of 6 hPa (roughly 80 m
in the free troposphere), well beyond the resolution of any of the current
global models. The same grid resolution is used for computing dynamics and
tracer transport.</p>
      <p id="d1e4751">The time step for the Lagrangian remapping is 30 min for the lowest
horizontal resolution case (C48) and is reduced proportionally at higher
horizontal resolutions. Within this time step are eight sub-steps for
horizontal dynamics calculations. The frequency of horizontal tracer
advection calculations is determined on the fly based on the CFL criterion.</p>
      <p id="d1e4755">The plume is initialized with a uniform mixing ratio normalized to unity over
a horizontal area corresponding to 6 <inline-formula><mml:math id="M230" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 6 C48 grid squares (roughly
1000 km <inline-formula><mml:math id="M231" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1000 km) and vertically in a single layer in the L20
case (roughly 0.6 km thick) centered at 625 hPa (4 km) altitude. Thus, our
coarsest simulation C48L20 resolves the initial plume with
6 <inline-formula><mml:math id="M232" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 6 <inline-formula><mml:math id="M233" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1 grid cells, while our finest simulation C384L160
resolves it with 48 <inline-formula><mml:math id="M234" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 48 <inline-formula><mml:math id="M235" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 8 grid cells. The initialization
is intended to describe a pollution plume once it has been lifted to the free
troposphere and undergone fast initial horizontal fanning (Andreae et al.,
1988; Heald et al., 2003). CTMs are generally successful at simulating this
initial fanning but then fail to preserve the plume's coherent structure
during the subsequent intercontinental transport (Heald et al., 2006; Zhang
et al., 2008). The sensitivity of our results to the initial plume size will
be discussed in Sect. 4.3.</p>
</sec>
<sec id="Ch1.S4">
  <title>Results and discussion</title>
<sec id="Ch1.S4.SS1">
  <title>Plume transport and stretching</title>
      <p id="d1e4812">Figure 2 shows the surface pressures and 700 hPa wind fields on day 8 of the
plume simulation, at C48L20 and<?pagebreak page6045?> C384L20 resolutions. The simulation describes
a typical quasi-geostrophic system at midlatitudes with low and high
pressure centers and the associated geostrophic winds. We find that
increasing the horizontal resolution intensifies the cyclones, as shown in
previous studies (Jablonowski and Williamson, 2006; Lauritzen et al., 2010),
while increasing vertical resolution from L20 to L160 has almost no effect.
Hence, the GCM emphasis on increasing horizontal resolution.</p>
      <p id="d1e4815">Also shown in Fig. 2 is the local Lyapunov exponent <inline-formula><mml:math id="M236" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> of the wind
field. <inline-formula><mml:math id="M237" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> is the rate constant at which nearby air parcels separate in
the direction of the flow, i.e., the intensity of flow stretching.
Rastigejev et al. (2010) showed theoretically that the Lyapunov exponent
should be a predictor of numerical diffusion in Eulerian models, and Eastham
and Jacob (2017) confirmed this in GEOS-Chem model simulations. We calculate
the Lyapunov exponent locally, using the formula derived by Eastham and Jacob (2017):
            <disp-formula id="Ch1.E28" content-type="numbered"><mml:math id="M238" display="block"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>≈</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mfenced close="|" open="|"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>u</mml:mi></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mfenced open="|" close="|"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>v</mml:mi></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>u</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M240" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>v</mml:mi></mml:mrow></mml:math></inline-formula> are the changes in wind speed between the
local grid cell and the grid cell downwind, and <inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi></mml:mrow></mml:math></inline-formula> are
the corresponding grid spacings. Between 30<inline-formula><mml:math id="M243" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N and 60<inline-formula><mml:math id="M244" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N
where the plume transport takes place, the Lyapunov exponents are of order
10<inline-formula><mml:math id="M245" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M246" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, consistent with values<?pagebreak page6046?> derived from the GEOS-FP wind
data (Eastham and Jacob, 2017). Higher horizontal resolution increases
stretching because small-scale eddies are better resolved, which offsets some
of the reduction in numerical diffusion (Rastigejev et al., 2010). We find
the 700 hPa vertical wind speed <inline-formula><mml:math id="M247" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> at 30–60<inline-formula><mml:math id="M248" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N of
<inline-formula><mml:math id="M249" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.1 <inline-formula><mml:math id="M250" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1.0 cm s<inline-formula><mml:math id="M251" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (mean <inline-formula><mml:math id="M252" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1 SD), typical of the range of
large-scale vertical wind speeds in the real atmosphere. Thus, the FV3
simulation provides a realistic environment to investigate how global-scale
transport of chemical plumes is sensitive to model grid resolution. It does
not account for deep convection or boundary layer turbulence, but our focus
here is on the free troposphere under the prevailing stable conditions that
allow for plume preservation during global-scale transport. The plume may
originate from a convective updraft, and it may be eventually entrained and
mixed in the turbulent boundary layer, but convection and boundary layer
turbulence are out of scope.</p>
      <p id="d1e5005">Figure 3 illustrates the evolution of the plume over the 8-day period in the
C384L160 case (<inline-formula><mml:math id="M253" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 25 km, 6 hPa resolution). The plume is
initialized over Alaska, reaches eastern North America by day 4, and Eurasia
by day 8, with strong filamentation along the way due to wind shear. Such
rapid transport and filamentation are typical of free tropospheric plumes at
northern midlatitudes (Stohl et al., 2002). The plume gradually subsides and
dilutes vertically over the 8-day period, with a subsidence rate typical of
observations (Crawford et al., 2004). The spreading and dilution of the plume
apparent in Fig. 3 are due in part to the plotting of column and meridional
average mixing ratios for visualization purposes; the actual numerical
diffusion is less and can be quantified by the mixing ratio decay and entropy
increase for the actual plume, as described in Sect. 4.2.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Numerical diffusion at different grid resolutions</title>
      <p id="d1e5021">Exact solution to the advection equation conserves the mixing ratio, even for
divergent or sheared flow (Chapter 7.2 of Brasseur and Jacob, 2017). Our
simulation includes advection as the only process. It follows that any mixing
ratio decay in the model plume must be due solely to numerical diffusion and
provides a metric for this diffusion.</p>
      <p id="d1e5024">Figure 4 shows the rate of decay of the maximum mixing ratio in the plume for
the different horizontal and vertical resolutions of our simulations. The
timescale for this decay diagnoses the rate of plume dissipation from
numerical diffusion and can be used to compare different grid resolutions
(Rastigejev et al., 2010; Eastham and Jacob, 2017).</p>
      <p id="d1e5027">At the lowest resolution (C48L20), the maximum mixing ratio in the plume
drops from 1.0 to 0.1 after 8 days. Such rapid diffusion is consistent with
the midlatitude results of Eastham and Jacob (2017) using GEOS-FP winds.
Starting from C48L20, solely increasing the vertical resolution has no
benefit in reducing numerical diffusion (Fig. 4, top left panel). Solely
increasing horizontal resolution has some<?pagebreak page6047?> benefit for the first 4 days of
aging, but by day 5 the benefit is gone (Fig. 4, bottom left panel). This is
consistent with the theory in Sect. 2.1 that inadequate resolution in one
direction will limit the overall accuracy, making grid refinement in the
other direction useless.</p>
      <p id="d1e5030">However, once the resolution of one dimension is high enough that it is no
longer a limiting factor, grid refinement in the other direction becomes
effective. This is illustrated in the right panels of Fig. 4. Increasing
vertical resolution in a C384 simulation has sustained benefit from L20 to
L160, and increasing horizontal resolution in a L160 simulation has sustained
benefit from C48 to C384. At the highest resolution (C384L160), the decay in
the maximum mixing ratio is only 35 % after 8 days of transport, a
drastic improvement over the simulation cases presented by Rastigejev et
al. (2010) and Eastham and Jacob (2017).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p id="d1e5036">Vertical profile of the maximum mixing ratio for each model vertical
level after 8 days of simulation, at low model resolution (C48L20), high
model resolution (C384L160) and intermediate cases where only horizontal
resolution or vertical resolution is increased from the low-resolution case
(C384L20, C48L160).</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/6039/2018/acp-18-6039-2018-f05.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p id="d1e5047">Same as Fig. 4 but with entropy instead of maximum mixing ratio as a
diagnostic for numerical diffusion. The entropy is initialized on day 0 with
a value of 1. Pure advection conserves entropy but diffusion increases it.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/6039/2018/acp-18-6039-2018-f06.png"/>

        </fig>

      <p id="d1e5056">The behavior of decay rates in Fig. 4 lends further insights into numerical
diffusion. We see that the decay rates are initially slow and then abruptly
increase. This is because the plume is initially well resolved on the grid,
but as the plume gradually filaments and becomes poorly resolved, fast
numerical diffusion takes over. Increasing horizontal resolution delays the
onset of this fast numerical diffusion, as seen most dramatically in the
bottom left panel of Fig. 4. Thus, a factor in the choice of resolution should
be the extent of time over which the model plumes must be preserved,
considering that molecular diffusion will eventually dissipate the plumes in
the actual atmosphere as they filament down to the millimeter Kolmogorov
scale (Chapter 8 of Brasseur and Jacob, 2017). Observations show that
intercontinental free tropospheric plumes can retain their structure for at
least a week (Heald et al., 2003; Zhang et al., 2008), so there is benefit in
the highest range of resolutions investigated in our simulations.</p>
      <p id="d1e5059">Figure 5 shows the vertical profile of maximum mixing ratios for each model
level after 8 days of simulation, at the lowest model resolution (C48L20),
the highest model resolution (C384L160) and intermediate cases where only
horizontal or vertical resolution is increased from the low-resolution case
(C384L20, C48L160). Starting from C48L20, solely increasing either the
horizontal resolution (to C384L20) or the vertical resolution (to C48L160)
has limited improvement on the vertical profile. This is the familiar picture
of models being unable to preserve the vertical structure of pollution plumes
on intercontinental scales (Heald et al., 2003). Increasing both horizontal
and vertical resolutions (to C384L160) drastically improves the preservation
of the vertical profile and largely fixes the problem. The surface
concentrations are close to zero in all cases but this is because the FV3
dynamical core does not include boundary layer physics. From the
concentrations at 900–950 hPa, we can conclude that the high-resolution
simulation when implemented in a full GCM would lead to much stronger
localized impact of the subsiding plume on surface concentrations.</p>
      <p id="d1e5062">Maximum mixing ratio in the plume is an extreme value diagnostic that is
relevant for plume observation and impact but is an imperfect measure of
plume dilution (Eastham and Jacob, 2017). As shown in Fig. 3, the plume
shears into multiple filaments as it ages but the maximum mixing ratio
diagnoses just one of these filaments. Also, numerical diffusion will first
erode the plume as its edges while preserving the maximum mixing ratio at the
center. Eastham and Jacob (2017) used the expanding size of the plume as an
alternate diagnostic but this relies on an arbitrary concentration threshold.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p id="d1e5068">Optimal combination of horizontal and vertical grid resolutions
(<inline-formula><mml:math id="M254" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>) for minimizing numerical diffusion of chemical
plumes within a given amount of computational resources. Results are from the
FV3 simulation (data from Figs. 4 and 6) and can be compared to Fig. 1 that
shows similar results from theoretical analysis. The filled contours show the
maximum plume mixing ratio <bold>(a)</bold> or entropy <bold>(b)</bold> on day 8 of
the simulations as metrics of numerical diffusion. High maximum mixing ratio
and low entropy are indicative of low numerical diffusion. The red dots are
the data points used to construct the contours, with each point corresponding to a
simulation at a given resolution. The solid lines indicate a fixed amount of
computational resources (<inline-formula><mml:math id="M256" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula>) in the trade-off between horizontal and
vertical resolution, either using a fixed time step (<inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>) or accounting for the CFL condition (<inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>). The
yellow dashed lines show different <inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M260" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M261" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> ratios (400,
500, 700).</p></caption>
          <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/6039/2018/acp-18-6039-2018-f07.png"/>

        </fig>

      <p id="d1e5180">As a more general diagnostic of plume preservation, we calculate the entropy
that takes into account all grid cells in the global domain (Lauritzen and
Thuburn, 2012). The entropy <inline-formula><mml:math id="M262" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> of a 3-D mixing ratio field can be calculated
by
            <disp-formula id="Ch1.E29" content-type="numbered"><mml:math id="M263" display="block"><mml:mrow><mml:mi>S</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>k</mml:mi><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>n</mml:mi></mml:munderover><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mi>log⁡</mml:mi><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M264" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> is the total number of grid cells of index <inline-formula><mml:math id="M265" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the
mixing ratio, <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the mass of air in the grid cell, and <inline-formula><mml:math id="M268" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is a
scaling factor such that the initial entropy is unity. Pure advection
conserves entropy but diffusion increases it, and <inline-formula><mml:math id="M269" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> is maximized when the
mixing ratio field <inline-formula><mml:math id="M270" display="inline"><mml:mi>C</mml:mi></mml:math></inline-formula> becomes uniform (complete mixing). A non-monotonic
advection scheme can unphysically decrease entropy, but here we use strictly
monotonic schemes in both horizontal
and vertical dimensions so this would not happen.
Entropy would increase in a real-world plume as filamentation leads to
eventual plume dissipation by molecular diffusion, but numerical diffusion is
much faster on our scales of relevance (D'Isidoro et al., 2010). Thus, our
goal here is to minimize entropy, i.e., minimize numerical diffusion.</p>
      <p id="d1e5293">Figure 6 shows the increase in entropy as the plume dilutes at different
model grid resolutions. Results are similar to the maximum mixing ratio
diagnostic (Fig. 4) in showing the limiting effects of either horizontal or
vertical resolution, and the benefit of coupling the two to improve the
simulation. One difference is the absence of a time lag for plume dilution.
Whereas the maximum mixing ratio is initially sheltered from numerical
diffusion if the plume is resolved by a number of grid cells, numerical
diffusion erodes the plume edges and the thinner filaments, and this is
captured by the entropy diagnostic. The entropy diagnostic also shows a
slowdown of plume dilution with time, particularly at coarse resolution, and
this is due to the smoothing of the plume that allows concentration gradients
to be better represented by the numerical schemes. Nevertheless, the entropy
continues to increase even as plume edges become smoother. Ultimately, the
choice of maximum mixing ratio or entropy as a diagnostic of plume
dissipation may depend on the<?pagebreak page6049?> application, but the implied requirements for
grid resolution are similar. This is discussed further below (Sect. 4.3).</p>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Optimal combination of horizontal and vertical grid resolution</title>
      <p id="d1e5302">The results from Sect. 4.2, following on the theoretical analysis of Sect. 2,
show that preserving plumes in global models may be limited by either
horizontal or vertical resolution. It follows that there must be an optimal
ratio of horizontal to vertical grid spacing (<inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M272" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>)<inline-formula><mml:math id="M274" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">opt</mml:mi></mml:msub></mml:math></inline-formula> for simulating the global-scale transport of plumes, as
there is for the dynamical criteria reviewed in the introduction. We derived
such a ratio from theoretical analysis in Sect. 2, and here we derive it from
the FV3 plume simulations.</p>
      <p id="d1e5341">Figure 7 illustrates the trade-offs between horizontal and vertical
resolution in the FV3 plume simulations, presented in a similar manner to the
results of the theoretical analysis in Fig. 1. The contours measure the
preservation of the plume after 8 days, as diagnosed by either the maximum
mixing ratio or the entropy, using the day 8 data from Figs. 4 and 6 with
additional simulations at intermediate resolutions to better define the
contours. As in Sect. 2.3, we aim to preserve the maximum mixing ratio and/or
minimize entropy under the computational trade-offs <inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M276" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>. The actual computational costs of our
GFDL-FV3 simulations follow the <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula> curve, since the
time step is reduced proportionally with the horizontal resolution. The solid
lines show the computational trade-offs. Along each trade-off line, it is
generally beneficial to move away from <inline-formula><mml:math id="M278" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M279" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> &lt; 100 (the upper left region of Fig. 7, <inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">25</mml:mn></mml:mrow></mml:math></inline-formula>–50 km,
<inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.6</mml:mn></mml:mrow></mml:math></inline-formula> km) and toward <inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M284" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M286" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1000
(the bottom region of Fig. 7, <inline-formula><mml:math id="M287" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">50</mml:mn></mml:mrow></mml:math></inline-formula>–200 km, <inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.08</mml:mn></mml:mrow></mml:math></inline-formula> km), since it leads to better preservation of the plume without
incurring more computational cost. Thus, we already see that the current
generation of models (<inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M290" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M291" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M292" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20) is out of
balance in privileging horizontal over vertical resolution.</p>
      <p id="d1e5561">As in Sect. 2.3, the optimal ratio (<inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M294" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>)<inline-formula><mml:math id="M296" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">opt</mml:mi></mml:msub></mml:math></inline-formula> is defined by the point where the computational trade-off
line parallels the contour line. Different ratios <inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M298" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M299" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>
are shown as yellow dashed lines in Fig. 7. For the <inline-formula><mml:math id="M300" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>
trade-off (the red solid lines in Fig. 7), the optimal <inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M302" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M303" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> is in the range 400–700. For the <inline-formula><mml:math id="M304" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>
trade-off (white solid lines), the optimal <inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M306" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> is
around 400. This is consistent with the theoretical derivation in Sect. 2.3
where the optimal <inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M309" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M310" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> is of order 1000.</p>
      <p id="d1e5753">We conducted sensitivity tests with plumes of different initial vertical
thicknesses and horizontal extents, and found similar results. Thicker plumes
have better initial preservation of the maximum mixing ratio but this
advantage is rapidly lost as the plume filaments. Although the theoretical
analysis of Sect. 2 implies that (<inline-formula><mml:math id="M311" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M312" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>)<inline-formula><mml:math id="M314" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">opt</mml:mi></mml:msub></mml:math></inline-formula>
should depend on the plume size, this applies to the stretched rather than to
the initial plume. During model transport, plumes of different initial
thicknesses tend to be stretched to similar steady-state thicknesses where
the stretching rate (thinning the plume) is balanced by the numerical
diffusion rate (thickening the plume) (Rastigejev et al., 2010).</p>
      <p id="d1e5793">The estimated (<inline-formula><mml:math id="M315" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M316" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M317" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">opt</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> should not greatly
depend on the advection scheme used, since fast numerical diffusion occurs
when the plume has filamented to the point where gradients cannot be resolved
and any advection scheme collapses to first-order accurate. One concern is
whether FV3 represents realistically the ratio of vertical-to-horizontal
shear that would occur in a wet atmosphere; this should be tested in
simulations in an actual GCM. Nevertheless, it appears that the vertical
resolution requirements for global simulation of chemical plumes are larger
than the ratio (<inline-formula><mml:math id="M318" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M319" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M320" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">opt</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M321" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100
derived from dynamical concerns of resolving fronts and gravity waves, and
that current models have inadequate vertical resolutions.</p>
      <p id="d1e5868">Our recommendation to increase vertical resolution in the free troposphere is
specific to global models, and our emphasis on an optimal <inline-formula><mml:math id="M322" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M323" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> is to make the point that the simulation of global-scale
plumes with large horizontal/vertical aspect ratios (reflecting the strong
horizontal wind shear and vertically stable conditions of the free
troposphere) is currently limited by vertical rather than by horizontal model
resolution. The situation would be very different in cloud-resolving models
(<inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> &lt; 1 km) where turbulence is much more isotropic.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions and implications for global modeling of chemical
plumes</title>
      <p id="d1e5916">Current global models are unable to simulate the observed persistence of
chemical plumes in the free troposphere on intercontinental scales. The
plumes dilute too rapidly due to numerical diffusion in sheared flow. This is
a major problem for global simulations of atmospheric composition and for
diagnosing intercontinental pollution influences on surface air quality. We
investigated how this problem could be solved through increasing horizontal
and vertical grid resolutions, and in what optimal combination. We used for
this purpose the GFDL-FV3 global dynamical core to perform plume transport
simulations, driven by flow with realistic shear as generated from a
baroclinic instability test. The flexibility of this dynamical core allowed
us to conduct simulations over cubed-sphere horizontal resolutions ranging
from C48 (<inline-formula><mml:math id="M326" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 200 km) to C384 (<inline-formula><mml:math id="M327" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 25 km) and vertical
resolutions ranging from L20 (50 hPa) to L160 (6 hPa).</p>
      <p id="d1e5933">We began with a theoretical analysis of the plume advection problem to show
that numerical diffusion may be limited by either horizontal grid resolution
(<inline-formula><mml:math id="M328" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>) or vertical resolution (<inline-formula><mml:math id="M329" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>). This analysis must take
into account that increasing horizontal resolution is more costly than
increasing vertical resolution, as expressed by <inline-formula><mml:math id="M330" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mi>P</mml:mi></mml:mrow></mml:math></inline-formula>
where <inline-formula><mml:math id="M331" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula> denotes the amount of computational resources available and <inline-formula><mml:math id="M332" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> (fixed time step) or <inline-formula><mml:math id="M333" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula> (time step<?pagebreak page6050?> adjusted for the CFL
condition). We derived from this analysis an optimal ratio (<inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M335" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M336" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">opt</mml:mi></mml:msub><mml:mo>≈</mml:mo><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>w</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi>u</mml:mi><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:mi>L</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:math></inline-formula> for
resolving the long-range transport of plumes, where <inline-formula><mml:math id="M337" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M338" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> are the
horizontal and vertical components of the wind, and <inline-formula><mml:math id="M339" display="inline"><mml:mi>L</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M340" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> are the
horizontal and vertical dimensions of the plume. This is larger than the
optimal ratio (<inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M342" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M343" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msub><mml:mo>)</mml:mo><mml:mi mathvariant="normal">opt</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M344" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 100
derived from dynamical considerations of resolving fronts and gravity waves.
Current global atmospheric models have <inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M346" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M347" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> in
the free troposphere (<inline-formula><mml:math id="M348" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M349" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 km, <inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M351" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5 km), with an emphasis on continued improvement in horizontal
resolution to the neglect of vertical resolution. This explains why
excessively fast dilution of chemical plumes takes place in these models. The
problem would not apply in the boundary layer, where plumes are more
isotropic (much lower <inline-formula><mml:math id="M352" display="inline"><mml:mrow><mml:mi>L</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula>) and models have larger <inline-formula><mml:math id="M353" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M354" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M355" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> ratios. But global-scale plume transport takes place mainly in the free
troposphere.</p>
      <p id="d1e6249">We applied the FV3 dynamical core to simulate the transport over 8 days of a
chemically inert free tropospheric plume at northern midlatitudes. Transport
in the dynamical core is solely by advection, and exact solution should
therefore preserve the initial mixing ratio in the plume. We diagnosed
numerical diffusion over the 8-day simulation by the decay of the maximum
mixing ratio and the increase in entropy. We demonstrated how improvements in
preserving the plume during transport can be limited by either horizontal or
vertical resolution, in a manner consistent with the theoretical analysis.
Our highest-resolution simulation (C384L160) preserved the maximum mixing
ratio in the plume to within 35 % after 8 days in strongly sheared flow,
retained the vertical structure of the plume and led to much larger local
intercontinental impacts on surface air than the coarser-resolution
simulations. The required vertical resolution in the free troposphere is
6 hPa (<inline-formula><mml:math id="M356" display="inline"><mml:mo lspace="0mm">≈</mml:mo></mml:math></inline-formula> 80 m), considerably finer than in current global models.</p>
      <p id="d1e6259"><?xmltex \hack{\newpage}?>There are strong reasons for GCMs to focus on increasing horizontal
resolution, as this allows better representation of cyclogenesis and other
aspects of the meteorological simulation. However, simulations of global
chemical transport require higher vertical resolution in the free
troposphere. Considering that the free troposphere accounts for only about a
third of all vertical levels in the current generation of models, adding
vertical resolution only to that part of the atmosphere would not be
expensive. A proper vertical resolution in the free troposphere would also
benefit the simulation of water vapor with implications for the radiative
budget and for cloud formation. Within the framework of current GCMs, it may
be possible to improve chemical transport by conducting offline CTM
simulations with high vertical resolution, interpolating the meteorological
archive from the parent GCM. The feasibility of such hybrid-resolution
simulations has been studied by Methven and Hoskins (1999). Adaptive mesh
refinement (AMR) is also a computationally efficient approach to improve
plume simulations (Semakin and Rastigejev, 2016), but implementing AMR in
existing CTMs requires significant engineering efforts especially on
parallelization.</p>
</sec>

      
      </body>
    <back><notes notes-type="codeavailability">

      <p id="d1e6267">The FV3 source code was obtained from
<uri>https://www.gfdl.noaa.gov/cubed-sphere-quickstart/</uri>. All scripts for model configuration and data analysis are
available at <uri>https://github.com/JiaweiZhuang/FV3_util</uri> (<ext-link xlink:href="https://doi.org/10.5281/zenodo.1214605" ext-link-type="DOI">10.5281/zenodo.1214605</ext-link>). A Python package named
“cubedsphere”
(<uri>https://github.com/JiaweiZhuang/cubedsphere</uri>, <ext-link xlink:href="https://doi.org/10.5281/zenodo.1095677" ext-link-type="DOI">10.5281/zenodo.1095677</ext-link>) was developed by the lead author for
analyzing data on the cubed-sphere grid. We use xarray (Hoyer and Hamman,
2017) to process NetCDF data that are larger than computer memory.</p>
  </notes><?xmltex \hack{\clearpage}?><app-group>

<?pagebreak page6051?><app id="App1.Ch1.S1">
  <?xmltex \opttitle{Relating $\partial^{{2}}C/\partial t^{{2}}$ and
$\partial^{{2}}C/\partial x^{{2}}$ through the advection equation}?><title>Relating <inline-formula><mml:math id="M357" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M358" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> through the advection equation</title>
      <p id="d1e6339">Following Odman (1997), we start with the 1-D advection equation:

              <disp-formula id="App1.Ch1.E1" content-type="numbered"><mml:math id="M359" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        The equation is solved by the 1-D upwind scheme:

              <disp-formula id="App1.Ch1.E2" content-type="numbered"><mml:math id="M360" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>C</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>C</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>C</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mi>C</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>n</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        Using the modified equation approach introduced in Sect. 2, we find the
numerical scheme better represents the equation

              <disp-formula id="App1.Ch1.E3" content-type="numbered"><mml:math id="M361" display="block"><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{9.5}{9.5}\selectfont$\displaystyle}?><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>o</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo><?xmltex \hack{$\egroup}?></mml:mrow></mml:math></disp-formula>

        We apply the operation <inline-formula><mml:math id="M362" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:mo>∂</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to Eq. (A3):

              <disp-formula specific-use="align" content-type="numbered"><mml:math id="M363" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mo>∂</mml:mo><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="[" close="]"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mo>∂</mml:mo><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close="" open="["><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="App1.Ch1.E4"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><?xmltex \hack{\hspace*{5mm}}?><mml:mfenced close="]" open=""><mml:mrow><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>o</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          The right-hand side of Eq. (A4) only contains high-order terms such as
<inline-formula><mml:math id="M364" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M365" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>, so it can be simply written as <inline-formula><mml:math id="M366" display="inline"><mml:mrow><mml:mi>o</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>:

              <disp-formula id="App1.Ch1.E5" content-type="numbered"><mml:math id="M367" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mi>o</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        We subtract Eq. (A5) from Eq. (A3) to cancel the (<inline-formula><mml:math id="M368" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>)(<inline-formula><mml:math id="M369" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M370" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>
<inline-formula><mml:math id="M371" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) term:

              <disp-formula id="App1.Ch1.E6" content-type="numbered"><mml:math id="M372" display="block"><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{9.3}{9.3}\selectfont$\displaystyle}?><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>o</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo><?xmltex \hack{$\egroup}?></mml:mrow></mml:math></disp-formula>

        Compared to Eq. (A3), the second-order time derivative (<inline-formula><mml:math id="M373" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>)(<inline-formula><mml:math id="M374" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M375" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M376" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is now replaced by the
mixed derivative (<inline-formula><mml:math id="M377" display="inline"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>)(<inline-formula><mml:math id="M378" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M379" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M380" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>).</p>
      <p id="d1e7184">To further eliminate this mixed derivative, we apply the operation (<inline-formula><mml:math id="M381" display="inline"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>)(<inline-formula><mml:math id="M382" display="inline"><mml:mo lspace="0mm">∂</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M383" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M384" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>) to Eq. (A6)

              <disp-formula specific-use="align" content-type="numbered"><mml:math id="M385" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mo>∂</mml:mo><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="[" close="]"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mo>∂</mml:mo><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="App1.Ch1.E7"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><?xmltex \hack{\hspace*{5mm}}?><mml:mfenced open="[" close="]"><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>o</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          Again, the right-hand side of Eq. (A7) can be simply written as <inline-formula><mml:math id="M386" display="inline"><mml:mrow><mml:mi>o</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>:

              <disp-formula id="App1.Ch1.E8" content-type="numbered"><mml:math id="M387" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mi>o</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        We add Eq. (A8) to Eq. (A6) to cancel the (<inline-formula><mml:math id="M388" display="inline"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>)(<inline-formula><mml:math id="M389" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M390" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M391" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula>) term:

              <disp-formula specific-use="align" content-type="numbered"><mml:math id="M392" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="App1.Ch1.E9"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hspace*{5mm}}?><mml:mo>+</mml:mo><mml:mi>o</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          Now, all time derivatives except the original <inline-formula><mml:math id="M393" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M394" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M395" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula>
are removed. The time step <inline-formula><mml:math id="M396" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula> can also be removed by introducing the
CFL number <inline-formula><mml:math id="M397" display="inline"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mo>=</mml:mo><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:math></inline-formula>. The first term on the right-hand
side of Eq. (A9) becomes

              <disp-formula id="App1.Ch1.E10" content-type="numbered"><mml:math id="M398" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        Thus, Eq. (A9) can be further simplified to

              <disp-formula id="App1.Ch1.E11" content-type="numbered"><mml:math id="M399" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>u</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mi>o</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        Comparing Eq. (A11) to Eq. (A3), the time derivative (<inline-formula><mml:math id="M400" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>)(<inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M402" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>) is approximated by the spatial
derivative (<inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:mi mathvariant="italic">α</mml:mi><mml:mi>u</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>)(<inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M406" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M407" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>).
This means that, as long as the CFL condition is satisfied, the time
discretization error will not limit the overall accuracy. This conclusion
still applies to a 3-D advection equation, although the above mathematical
derivation will produce mixed derivatives like
<inline-formula><mml:math id="M408" display="inline"><mml:mrow><mml:msup><mml:mo>∂</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>C</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M409" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M410" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi><mml:mo>∂</mml:mo><mml:mi>y</mml:mi></mml:mrow></mml:math></inline-formula>, so a compact formula like
Eq. (A11) cannot be easily obtained.</p>
</app>

<app id="App1.Ch1.S2">
  <title>Comparing vertical numerical diffusion in FV3 and TPCORE schemes</title>
      <p id="d1e8064">Here, we use the GEOS-Chem CTM to compare vertical numerical diffusion in
FV3's advection scheme to that in TPCORE, a 3-D Eulerian advection scheme
(Lin and Rood, 1996). TPCORE is the standard advection scheme in the
“classic” version of the GEOS-Chem CTM (Bey et al., 2001), while FV3 is
used in the high-performance version of GEOS-Chem (GCHP; Long et al., 2017;
Yu et al., 2018). Unlike FV3, TPCORE uses a regular latitude–longitude
geometry and a vertically Eulerian discretization. When the CFL number is
less than 1, the horizontal tracer transport uses the monotonic PPM as in
FV3; otherwise, a semi-Lagrangian method is used. The vertical tracer
transport uses PPM with Huynh's second constraint (Huynh, 1997). We use a C48
horizontal resolution for GEOS-Chem with FV3 and a corresponding
2<inline-formula><mml:math id="M411" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M412" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 2.5<inline-formula><mml:math id="M413" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> resolution for GEOS-Chem with TPCORE. Both
versions use the native GEOS-FP 72-level hybrid sigma-pressure vertical
coordinate and a time step of 15 min.</p>

      <?xmltex \floatpos{ht!}?><fig id="App1.Ch1.F1"><caption><p id="d1e8094">Comparing vertical diffusion in the GEOS-Chem CTM using either the
TPCORE Eulerian advection scheme <bold>(b–d)</bold> or the FV3 vertically
Lagrangian advection scheme <bold>(e–g)</bold>. A Hadley-like circulation test is
applied to both schemes with rising motion in the first 12 h followed by
return to the original state in the next 12 h (Kent et al., 2014). The
tracer field is independent of longitude. The true solution at the final
state (<inline-formula><mml:math id="M414" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">24</mml:mn></mml:mrow></mml:math></inline-formula> h) should be the same as the initial condition <bold>(a)</bold>, and the
deviation from the initial condition is due to numerical error. The error
<bold>(d, g)</bold> is defined as final state minus initial state.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/6039/2018/acp-18-6039-2018-f08.png"/>

      </fig>

      <p id="d1e8129">We use the idealized Hadley-like circulation test in the 2012 Dynamical Core
Model Intercomparison Project (Kent et al., 2014) to benchmark the vertical
diffusion in both models. The simulation is illustrated in Fig. B1. The
initial tracer layer (Fig. B1, left panel) is advected in the vertical by<?pagebreak page6052?> a
Hadley-like flow (Fig. B1, middle panels) and then gets reverted to the
original state by a reverse flow (Fig. B1, right panels). The true solution
at the final state should be the same as the initial condition, and the
deviation from the initial condition is due to numerical error. The error
norm can be calculated by

              <disp-formula id="App1.Ch1.E12" content-type="numbered"><mml:math id="M415" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>l</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>n</mml:mi></mml:munderover><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced close="|" open="|"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mi>r</mml:mi><mml:mi>u</mml:mi><mml:mi>e</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow><mml:mrow><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>n</mml:mi></mml:munderover><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced close="|" open="|"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mi>r</mml:mi><mml:mi>u</mml:mi><mml:mi>e</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfenced></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

        where <inline-formula><mml:math id="M416" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> is the total number of grid cells of index <inline-formula><mml:math id="M417" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M418" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the mass
of air in the grid cell, <inline-formula><mml:math id="M419" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the mixing ratio at the final state, and
<inline-formula><mml:math id="M420" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">true</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the mixing ratio at the initial state. We find <inline-formula><mml:math id="M421" display="inline"><mml:mrow><mml:mi>l</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">19.0</mml:mn></mml:mrow></mml:math></inline-formula> % for TPCORE and <inline-formula><mml:math id="M422" display="inline"><mml:mrow><mml:mi>l</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">16.2</mml:mn></mml:mrow></mml:math></inline-formula> % for FV3, indicating that the
vertically Lagrangian scheme in FV3 has a diffusion similar to the Eulerian
scheme in TPCORE.</p>
      <p id="d1e8303">There are many equivalences between remapping schemes and advection schemes.
For example, both higher-order remapping and higher-order advection schemes
are not monotonic by default and need additional limiters or constraints to
prevent overshoots. If gradients are sharp, monotonic limiters will degrade
higher-order schemes to first order, at the expense of making the schemes
more diffusive. Increasing the grid resolution will make both remapping and
advection schemes more accurate and less diffusive. Due to these similarities
between advection and remapping, our Eulerian-based theoretical analysis in
Sect. 2 should also apply to vertically Lagrangian schemes.</p><?xmltex \hack{\clearpage}?><supplementary-material position="anchor"><p id="d1e8307">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/acp-18-6039-2018-supplement" xlink:title="zip">https://doi.org/10.5194/acp-18-6039-2018-supplement</inline-supplementary-material>.</p></supplementary-material>
</app>
  </app-group><notes notes-type="competinginterests">

      <p id="d1e8318">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e8324">The authors would like to thank Lucas Harris, Xi Chen and Shian-Jiann Lin at GFDL for general guidance on
the GFDL-FV3 model. Resources supporting this work were provided by the NASA
High-End Computing (HEC) Program through the NASA Advanced
Supercomputing (NAS) Division at Ames Research Center. This work was
supported by the NASA Modeling, Analysis, and Prediction (MAP)
Program.<?xmltex \hack{\newline\newline}?>Edited by: Anja Schmidt <?xmltex \hack{\newline}?> Reviewed by: three
anonymous referees</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bib1"><label>1</label><mixed-citation>Andreae, M. O., Browell, E. V., Garstang, M., Gregory, G. L., Harriss, R. C.,
Hill, G. F., Jacob, D. J., Pereira, M. C., Sachse, G. W., Setzer, a. W.,
Dias, P. L. S., Talbot, R. W., Torres, A. L., and Wofsy, S. C.:
Biomass-burning emissions and associated haze layers over Amazonia, J.
Geophys. Res., 93, 1509–1527, <ext-link xlink:href="https://doi.org/10.1029/JD093iD02p01509" ext-link-type="DOI">10.1029/JD093iD02p01509</ext-link>, 1988.</mixed-citation></ref>
      <ref id="bib1.bib2"><label>2</label><mixed-citation>Balaji, V.: Climate Computing: The State of Play, Comput. Sci. Eng., 17,
9–13, <ext-link xlink:href="https://doi.org/10.1109/MCSE.2015.109" ext-link-type="DOI">10.1109/MCSE.2015.109</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib3"><label>3</label><mixed-citation>
Bey, I., Jacob, D. J., Yantosca, R. M., Logan, J. A., Field, B. D., Fiore, A.
M., Li, Q., Liu, H. Y., Mickley, L. J., and Schultz, M. G.: Global modeling
of tropospheric chemistry with assimilated meteorology: Model description and
evaluation, J. Geophys. Res.-Atmos., 106, 23073–23095, 2001.</mixed-citation></ref>
      <ref id="bib1.bib4"><label>4</label><mixed-citation>
Brasseur, G. P. and Jacob, D. J.: Modeling of Atmospheric Chemistry,
Cambridge University Press, Cambridge, 2017.</mixed-citation></ref>
      <ref id="bib1.bib5"><label>5</label><mixed-citation>Crawford, J. H., Heald, C. L., Fuelberg, H. E., Morse, D. M., Sachse, G. W.,
Emmons, L. K., Gille, J. C., Edward, D. P., Deeter, M. N., Chen, G., Olson,
J. R., Connors, V. S., Kittaka, C., and Hamlin, A. J.: Relationship between
measurements of pollution in the Troposphere (MOPITT) and in situ
observations of CO based on a large-scale feature sampled during TRACE-P, J.
Geophys. Res.-Atmos., 109, 1–10, <ext-link xlink:href="https://doi.org/10.1029/2003JD004308" ext-link-type="DOI">10.1029/2003JD004308</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bib6"><label>6</label><mixed-citation>D'Isidoro, M., Maurizi, A., and Tampieri, F.: Effects of resolution on the
relative importance of numerical and physical horizontal diffusion in
atmospheric composition modelling, Atmos. Chem. Phys., 10, 6213,
<ext-link xlink:href="https://doi.org/10.5194/acp-10-6213-2010" ext-link-type="DOI">10.5194/acp-10-6213-2010</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib7"><label>7</label><mixed-citation>Dritschel, D. G. and McKiver, W. J.: Effect of Prandtl's ratio on balance in
geophysical turbulence, J. Fluid Mech., 777, 569–590,
<ext-link xlink:href="https://doi.org/10.1017/jfm.2015.348" ext-link-type="DOI">10.1017/jfm.2015.348</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bib8"><label>8</label><mixed-citation>Durran, D. R.: Numerical Methods for Fluid Dynamics: With Applications to
Geophysics, <ext-link xlink:href="https://doi.org/10.1007/978-1-4419-6412-0" ext-link-type="DOI">10.1007/978-1-4419-6412-0</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib9"><label>9</label><mixed-citation>Eastham, S. D. and Jacob, D. J.: Limits on the ability of global Eulerian
models to resolve intercontinental transport of chemical plumes, Atmos. Chem.
Phys., 17, 2543–2553, <ext-link xlink:href="https://doi.org/10.5194/acp-17-2543-2017" ext-link-type="DOI">10.5194/acp-17-2543-2017</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bib10"><label>10</label><mixed-citation>Geophysical Fluid Dynamics Laboratory (GFDL): Quickstart Guide: Idealized finite-volume model
<uri>https://www.gfdl.noaa.gov/cubed-sphere-quickstart/</uri>, last access: April
2018.</mixed-citation></ref>
      <ref id="bib1.bib11"><label>11</label><mixed-citation>Goldstein, A. H., Millet, D. B., McKay, M., Jaeglé, L., Horowitz, L.,
Cooper, O., Hudman, R., Jacob, D. J., Oltmans, S., and Clarke, A.: Impact of
Asian emissions on observations at Trinidad Head, California, during ITCT
2K2, J. Geophys. Res.-Atmos., 109, 1–13, <ext-link xlink:href="https://doi.org/10.1029/2003JD004406" ext-link-type="DOI">10.1029/2003JD004406</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bib12"><label>12</label><mixed-citation>Haarsma, R. J., Roberts, M. J., Vidale, P. L., Catherine, A., Bellucci, A.,
Bao, Q., Chang, P., Corti, S., Fučkar, N. S., Guemas, V., Von Hardenberg,
J., Hazeleger, W., Kodama, C., Koenigk, T., Leung, L. R., Lu, J., Luo, J. J.,
Mao, J., Mizielinski, M. S., Mizuta, R., Nobre, P., Satoh, M., Scoccimarro,
E., Semmler, T., Small, J., and Von Storch, J. S.: High Resolution Model
Intercomparison Project (HighResMIP v1.0) for CMIP6, Geosci. Model Dev., 9,
4185–4208, <ext-link xlink:href="https://doi.org/10.5194/gmd-9-4185-2016" ext-link-type="DOI">10.5194/gmd-9-4185-2016</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bib13"><label>13</label><mixed-citation>Haiden, T., Janousek, M., Bidlot, J., Ferranti, L., Prates, F., Vitart, F.,
Bauer, P., and Richardson, D. S.: Evaluation of ECMWF forecasts, including
the 2016 resolution upgrade, ECMWF Tech. Memo., 792(January 2017) [online]
Available from:
<uri>http://www.ecmwf.int/sites/default/files/elibrary/2015/15275-evaluation-ecmwf-forecasts-including-2014-2015-upgrades.pdf</uri>,
2016.</mixed-citation></ref>
      <ref id="bib1.bib14"><label>14</label><mixed-citation>Heald, C. L., Jacob, D. J., Fiore, A. M., Emmons, L. K., Gille, J. C.,
Deeter, M. N., Warner, J., Edwards, D. P., Crawford, J. H., Hamlin, A. J.,
Sachse, G. W., Browell, E. V., Avery, M. A., Vay, S. A., Westberg, D. J.,
Blake, D. R., Singh, H. B., Sandholm, S. T., Talbot, R. W., and Fuelberg, H.
E.: Asian outflow and trans-Pacific transport of carbon monoxide and ozone
pollution: An integrated satellite, aircraft, and model perspective, J.
Geophys. Res.-Atmos., 108,  4804, <ext-link xlink:href="https://doi.org/10.1029/2003JD003507" ext-link-type="DOI">10.1029/2003JD003507</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bib15"><label>15</label><mixed-citation>Heald, C. L., Jacob, D. J., Park, R. J., Alexander, B., Fairlie, T. D.,
Yantosca, R. M., and Chu, D. A.: Transpacific transport of Asian
anthropogenic aerosols and its impact on surface air quality in the United
States, J. Geophys. Res.-Atmos., 111, D14310, <ext-link xlink:href="https://doi.org/10.1029/2005JD006847" ext-link-type="DOI">10.1029/2005JD006847</ext-link>,
2006.</mixed-citation></ref>
      <ref id="bib1.bib16"><label>16</label><mixed-citation>
Holton, J. R.: An Introduction to Dynamic Meteorology, Elsevier,
2004.</mixed-citation></ref>
      <ref id="bib1.bib17"><label>17</label><mixed-citation>Hoyer, S. and Hamman, J. J.: xarray: N-D labeled Arrays and Datasets in
Python, J. Open Res. Softw., 5, 1–6, <ext-link xlink:href="https://doi.org/10.5334/jors.148" ext-link-type="DOI">10.5334/jors.148</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bib18"><label>18</label><mixed-citation>Hudman, R. C., Jacob, D. J., Cooper, O. R., Evans, M. J., Heald, C. L., Park,
R. J., Fehsenfeld, F., Flocke, F., Holloway, J., Hübler, G., Kita, K.,
Koike, M., Kondo, Y., Neuman, A., Nowak, J., Oltmans, S., Parrish, D.,
Roberts, J. M., and Ryerson, T.: Ozone production in transpacific Asian
pollution plumes and implications for ozone air quality in California, J.
Geophys. Res. D Atmos., 109, 1–14, <ext-link xlink:href="https://doi.org/10.1029/2004JD004974" ext-link-type="DOI">10.1029/2004JD004974</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bib19"><label>19</label><mixed-citation>
Huynh, H. T.: Schemes and constraints for advection, in: Fifteenth
International Conference on Numerical Methods in Fluid Dynamics, 498–503,
Springer, Berlin, 1997.</mixed-citation></ref>
      <ref id="bib1.bib20"><label>20</label><mixed-citation>Ingram, W. J.: On the robustness of the water vapor feedback: GCM vertical
resolution and formulation, J. Clim., 15, 917–921,
<ext-link xlink:href="https://doi.org/10.1175/1520-0442(2002)015&lt;0917:OTROTW&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0442(2002)015&lt;0917:OTROTW&gt;2.0.CO;2</ext-link>, 2002.</mixed-citation></ref>
      <?pagebreak page6054?><ref id="bib1.bib21"><label>21</label><mixed-citation>Jablonowski, C. and Williamson, D. L.: A baroclinic instability test case for
atmospheric model dynamical cores, Q. J. Roy. Meteor. Soc., 132, 2943–2975,
<ext-link xlink:href="https://doi.org/10.1256/qj.06.12" ext-link-type="DOI">10.1256/qj.06.12</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bib22"><label>22</label><mixed-citation>Jablonowski, C., Lauritzen, P., Nair, R. D., and Taylor, M.: Idealized test
cases for the dynamical cores of Atmo- spheric General Circulation Models: A
proposal for the NCAR ASP 2008 summer colloquium, 74 pp., available at:
<uri>http://www-personal.umich.edu/~cjablono/NCAR_ASP_2008_idealized_testcases_29May08.pdf</uri>
(last access: April 2018), 2008.</mixed-citation></ref>
      <ref id="bib1.bib23"><label>23</label><mixed-citation>Kent, J., Jablonowski, C., Whitehead, J. P., and Rood, R. B.: Assessing
Tracer Transport Algorithms and the Impact of Vertical Resolution in a
Finite-Volume Dynamical Core, Mon. Weather Rev., 140, 1620–1638,
<ext-link xlink:href="https://doi.org/10.1175/mwr-d-11-00150.1" ext-link-type="DOI">10.1175/mwr-d-11-00150.1</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib24"><label>24</label><mixed-citation>Kent, J., Ullrich, P. A., and Jablonowski, C.: Dynamical core model
intercomparison project: Tracer transport test cases, Q. J. Roy. Meteor.
Soc., 140, 1279–1293, <ext-link xlink:href="https://doi.org/10.1002/qj.2208" ext-link-type="DOI">10.1002/qj.2208</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib25"><label>25</label><mixed-citation>Lane, D. E., Somerville, R. C. J., and Iacobellis, S. F.: Sensitivity of
cloud and radiation parameterizations to changes in vertical resolution, J.
Clim., 13, 915–922,
<ext-link xlink:href="https://doi.org/10.1175/1520-0442(2000)013&lt;0915:SOCARP&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0442(2000)013&lt;0915:SOCARP&gt;2.0.CO;2</ext-link>, 2000.</mixed-citation></ref>
      <ref id="bib1.bib26"><label>26</label><mixed-citation>Lauritzen, P. H. and Thuburn, J.: Evaluating advection/transport schemes
using interrelated tracers, scatter plots and numerical mixing diagnostics,
Q. J. Roy. Meteor. Soc., 138, 906–918, <ext-link xlink:href="https://doi.org/10.1002/qj.986" ext-link-type="DOI">10.1002/qj.986</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib27"><label>27</label><mixed-citation>Lauritzen, P. H., Jablonowski, C., Taylor, M. A., and Nair, R. D.: Rotated
Versions of the Jablonowski Steady-State and Baroclinic Wave Test Cases: A
Dynamical Core Intercomparison, J. Adv. Model. Earth Syst., 2, 34 pp.,
<ext-link xlink:href="https://doi.org/10.3894/james.2010.2.15" ext-link-type="DOI">10.3894/james.2010.2.15</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib28"><label>28</label><mixed-citation>Liang, Q., Jaeglé, L., Hudman, R. C., Turquety, S., Jacob, D. J., Avery,
M. A., Browell, E. V., Sachse, G. W., Blake, D. R., Brune, W., Ren, X.,
Cohen, R. C., Dibb, J. E., Fried, A., Fuelberg, H. E., Porter, M. J., Heikes,
B. G., Huey, G., Singh, H. B., and Wennberg, P. O.: Summertime influence of
Asian pollution in the free troposphere over North America, J. Geophys.
Res.-Atmos., 112, 1–20, <ext-link xlink:href="https://doi.org/10.1029/2006JD007919" ext-link-type="DOI">10.1029/2006JD007919</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bib29"><label>29</label><mixed-citation>Lin, M., Fiore, A. M., Horowitz, L. W., Cooper, O. R., Naik, V., Holloway,
J., Johnson, B. J., Middlebrook, A. M., Oltmans, S. J., Pollack, I. B.,
Ryerson, T. B., Warner, J. X., Wiedinmyer, C., Wilson, J., and Wyman, B.:
Transport of Asian ozone pollution into surface air over the western United
States in spring, J. Geophys. Res.-Atmos., 117, D00V07,
<ext-link xlink:href="https://doi.org/10.1029/2011JD016961" ext-link-type="DOI">10.1029/2011JD016961</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bib30"><label>30</label><mixed-citation>Lin, S.-J.: A “Vertically Lagrangian” Finite-Volume Dynamical Core for
Global Models, Mon. Weather Rev., 132, 2293–2307,
<ext-link xlink:href="https://doi.org/10.1175/1520-0493(2004)132&lt;2293:AVLFDC&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0493(2004)132&lt;2293:AVLFDC&gt;2.0.CO;2</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bib31"><label>31</label><mixed-citation>
Lin, S.-J. and Rood, R. B.: Multidimensional flux-form semi-Lagrangian
transport schemes, Mon. Weather Rev., 124, 2046–2070, 1996.</mixed-citation></ref>
      <ref id="bib1.bib32"><label>32</label><mixed-citation>Lindzen, R. S. and Fox-Rabinovitz, M.: Consistent Vertical and Horizontal
Resolution, Mon. Weather Rev., 117, 2575–2583,
<ext-link xlink:href="https://doi.org/10.1175/1520-0493(1989)117&lt;2575:CVAHR&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0493(1989)117&lt;2575:CVAHR&gt;2.0.CO;2</ext-link>, 1989.</mixed-citation></ref>
      <ref id="bib1.bib33"><label>33</label><mixed-citation>Long, M., Eastham, S., Zhuang, J., Yantosca, R., Sulprizio, M., Lundgren, E.,
Martin, R., Auer, B., and Thompson, M.: Since IGC7?: High-Performance
GEOS-Chem (GCHP) and Flexible Chemistry (FlexChem), 8th Int. GEOS-Chem Meet.
(IGC8), Harvard Univ. 2017, available from:
<uri>http://acmg.seas.harvard.edu/presentations/IGC8/talks/MonA_Overview_long_michael.pdf</uri>
(last access: April 2018), 2017.</mixed-citation></ref>
      <ref id="bib1.bib34"><label>34</label><mixed-citation>Lucchesi, R.: File Specification for GEOS-5 FP. GMAO Office Note No. 4
(Version 1.1), 61 pp., available at:
<uri>https://gmao.gsfc.nasa.gov/products/documents/GEOS_5_FP_File_Specification_ON4v1_1.pdf</uri>
(last access: April 2018), 2017.</mixed-citation></ref>
      <ref id="bib1.bib35"><label>35</label><mixed-citation>
Methven, J. and Hoskins, B.: The advection of high-resolution tracers by low
resolution winds, J. Atmos. Sci., 56, 3262–3285, 1999.</mixed-citation></ref>
      <ref id="bib1.bib36"><label>36</label><mixed-citation>Michalakes, J., Benson, R., Black, T., Duda, M., Govett, M., Henderson, T.,
Madden, P., Mozdzynski, G., Reinecke, A., and Skamarock, W.: Evaluating
Performance and Scalability of Candidate Dynamical Cores for the Next
Generation Global Prediction System, available at:
<uri>https://www2.cisl.ucar.edu/sites/default/files/Michalakes_Slides.pdf</uri>
(last access: April 2018),
2015.</mixed-citation></ref>
      <ref id="bib1.bib37"><label>37</label><mixed-citation>Neuman, J. A., Trainer, M., Aikin, K. C., Angevine, W. M., Brioude, J.,
Brown, S. S., De Gouw, J. A., Dube, W. P., Flynn, J. H., Graus, M., Holloway,
J. S., Lefer, B. L., Nedelec, P., Nowak, J. B., Parrish, D. D., Pollack, I.
B., Roberts, J. M., Ryerson, T. B., Smit, H., Thouret, V., and Wagner, N. L.:
Observations of ozone transport from the free troposphere to the Los Angeles
basin, J. Geophys. Res.-Atmos., 117, D00V09, <ext-link xlink:href="https://doi.org/10.1029/2011JD016919" ext-link-type="DOI">10.1029/2011JD016919</ext-link>,
2012.</mixed-citation></ref>
      <ref id="bib1.bib38"><label>38</label><mixed-citation>Newell, R. E., Thouret, V., Cho, J. Y. N., Stoller, P., Marenco, A., and
Smit, H. G.: Ubiquity of quasi-horizontal layers in the troposphere, Nature,
398, 316–319, <ext-link xlink:href="https://doi.org/10.1038/18642" ext-link-type="DOI">10.1038/18642</ext-link>, 1999.</mixed-citation></ref>
      <ref id="bib1.bib39"><label>39</label><mixed-citation>Nowak, J. B., Parrish, D. D., Neuman, J. A., Holloway, J. S., Cooper, O. R.,
Ryerson, T. B., Nicks, J. K., Flocke, F., Roberts, J. M., Atlas, E., de Gouw,
J. A., Donnelly, S., Dunlea, E., Hübler, G., Huey, L. G., Schauffler, S.,
Tanner, D. J., Warneke, C., and Fehsenfeld, F. C.: Gas-phase chemical
characteristics of Asian emission plumes observed during ITCT 2K2 over the
eastern North Pacific Ocean, J. Geophys. Res.-Atmos., 109, 1–18,
<ext-link xlink:href="https://doi.org/10.1029/2003JD004488" ext-link-type="DOI">10.1029/2003JD004488</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bib40"><label>40</label><mixed-citation>Odman, M. T.: A quantitative analysis of numerical diffusion introduced by
advection algorithms in air quality models, Atmos. Environ., 31, 1933–1940,
<ext-link xlink:href="https://doi.org/10.1016/S1352-2310(96)00354-8" ext-link-type="DOI">10.1016/S1352-2310(96)00354-8</ext-link>, 1997.</mixed-citation></ref>
      <ref id="bib1.bib41"><label>41</label><mixed-citation>Pecnick, M. J. and Keyser, D.: The effect of spatial resolution on the
simulation of upper-tropospheric frontogenesis using a sigma-coordinate
primitive equation model, Meteorol. Atmos. Phys., 40, 137–149,
<ext-link xlink:href="https://doi.org/10.1007/BF01032454" ext-link-type="DOI">10.1007/BF01032454</ext-link>, 1989.</mixed-citation></ref>
      <ref id="bib1.bib42"><label>42</label><mixed-citation>Pope, V. D., Pamment, J. A., Jackson, D. R., and Slingo, A.: The
representation of water vapor and its dependence on vertical resolution in
the Hadley center climate model, J. Clim., 14, 3065–3085,
<ext-link xlink:href="https://doi.org/10.1175/1520-0442(2001)014&lt;3065:TROWVA&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0442(2001)014&lt;3065:TROWVA&gt;2.0.CO;2</ext-link>, 2001.</mixed-citation></ref>
      <ref id="bib1.bib43"><label>43</label><mixed-citation>Putman, W. M. and Lin, S.-J.: Finite-volume transport on various cubed-sphere
grids, J. Comput. Phys., 227, 55–78, <ext-link xlink:href="https://doi.org/10.1016/j.jcp.2007.07.022" ext-link-type="DOI">10.1016/j.jcp.2007.07.022</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bib44"><label>44</label><mixed-citation>Rastigejev, Y., Park, R., Brenner, M. P., and Jacob, D. J.: Resolving
intercontinental pollution plumes in global<?pagebreak page6055?> models of atmospheric transport,
J. Geophys. Res.-Atmos., 115, <ext-link xlink:href="https://doi.org/10.1029/2009JD012568" ext-link-type="DOI">10.1029/2009JD012568</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib45"><label>45</label><mixed-citation>Schubert, S. D., Rood, R. B., and Pfaendtner, J.: An Assimilated Dataset for
Earth Science Applications, B. Am. Meteorol. Soc., 74, 2331–2342,
<ext-link xlink:href="https://doi.org/10.1175/1520-0477(1993)074&lt;2331:AADFES&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0477(1993)074&lt;2331:AADFES&gt;2.0.CO;2</ext-link>, 1993.</mixed-citation></ref>
      <ref id="bib1.bib46"><label>46</label><mixed-citation>Semakin, A. N. and Rastigejev, Y.: Numerical Simulation of Global-Scale
Atmospheric Chemical Transport with High-Order Wavelet-Based Adaptive Mesh
Refinement Algorithm, Mon. Weather Rev., 144, 1469–1486,
<ext-link xlink:href="https://doi.org/10.1175/mwr-d-15-0200.1" ext-link-type="DOI">10.1175/mwr-d-15-0200.1</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bib47"><label>47</label><mixed-citation>Stohl, A., Eckhardt, S., Forster, C., James, P., and Spichtinger, N.: On the
pathways and timescales of intercontinental air pollution transport, J.
Geophys. Res.-Atmos., 107, 1–17, <ext-link xlink:href="https://doi.org/10.1029/2001JD001396" ext-link-type="DOI">10.1029/2001JD001396</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bib48"><label>48</label><mixed-citation>Stoller, P., Cho, J. Y. N., Newell, R. E., Thouret, V., Zhu, Y., Carroll, M.
a., Albercook, G. M., Anderson, B. E., Barrick, J. D. W., Browell, E. V.,
Gregory, G. L., Sachse, G. W., Vay, S., Bradshaw, J. D., and Sandholm, S.:
Measurements of atmospheric layers from the NASA DC-8 and P-3B aircraft
during PEM-Tropics A, J. Geophys. Res., 104, 5745, <ext-link xlink:href="https://doi.org/10.1029/98JD02717" ext-link-type="DOI">10.1029/98JD02717</ext-link>,
1999.</mixed-citation></ref>
      <ref id="bib1.bib49"><label>49</label><mixed-citation>Thouret, V., Cho, J. Y. N., Newell, R. E., Marenco, A., and Smit, H. G. J.:
General characteristics of tropospheric trace constituent layers observed in
the MOZAIC program, J. Geophys. Res., 105, 17379, <ext-link xlink:href="https://doi.org/10.1029/2000JD900238" ext-link-type="DOI">10.1029/2000JD900238</ext-link>,
2000.</mixed-citation></ref>
      <ref id="bib1.bib50"><label>50</label><mixed-citation>Tompkins, A. M. and Emanuel, K. A.: The vertical resolution sensitivity of
simulated equilibrium temperature and water-vapour profiles, Q. J. Roy.
Meteor. Soc., 126, 1219–1238, <ext-link xlink:href="https://doi.org/10.1002/qj.49712656502" ext-link-type="DOI">10.1002/qj.49712656502</ext-link>, 2000.</mixed-citation></ref>
      <ref id="bib1.bib51"><label>51</label><mixed-citation>Ullrich, P. A., Jablonowski, C., and van Leer, B.: High-order finite-volume
methods for the shallow-water equations on the sphere, J. Comput. Phys., 229,
6104–6134, <ext-link xlink:href="https://doi.org/10.1016/j.jcp.2010.04.044" ext-link-type="DOI">10.1016/j.jcp.2010.04.044</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bib52"><label>52</label><mixed-citation>Ullrich, P. A., Jablonowski, C., Reed, K. A., Zarzycki, C., Lauritzen, P. H.,
Nair, R. D., Kent, J., and Verlet-Banide, A.: Dynamical Core Model
Intercomparison Project (DCMIP2016) Test Case Document, 2016.
 </mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bib53"><label>53</label><mixed-citation>Warming, R. F. and Hyett, B. J.: The modified equation approach to the
stability and accuracy analysis of finite-difference methods, J. Comput.
Phys., 14, 159–179, <ext-link xlink:href="https://doi.org/10.1016/0021-9991(74)90011-4" ext-link-type="DOI">10.1016/0021-9991(74)90011-4</ext-link>, 1974.</mixed-citation></ref>
      <ref id="bib1.bib54"><label>54</label><mixed-citation>
Warner, T. T.: Numerical Weather and Climate Prediction, Cambridge University
Press, Cambridge, 2010.</mixed-citation></ref>
      <ref id="bib1.bib55"><label>55</label><mixed-citation>Wild, O. and Prather, M. J.: Global tropospheric ozone modeling: Quantifying
errors due to grid resolution, J. Geophys. Res.-Atmos., 111, D11305,
<ext-link xlink:href="https://doi.org/10.1029/2005JD006605" ext-link-type="DOI">10.1029/2005JD006605</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bib56"><label>56</label><mixed-citation>
Yang, C., Xue, W., Fu, H., You, H., Wang, X., Ao, Y., Liu, F., Gan, L., Xu,
P., and Wang, L.: 10M-core scalable fully-implicit solver for nonhydrostatic
atmospheric dynamics, in: Proceedings of the International Conference for
High Performance Computing, Networking, Storage and Analysis, p. 6. IEEE
Press, 2016.</mixed-citation></ref>
      <ref id="bib1.bib57"><label>57</label><mixed-citation>Yu, K., Keller, C. A., Jacob, D. J., Molod, A. M., Eastham, S. D., and Long,
M. S.: Errors and improvements in the use of archived meteorological data for
chemical transport modeling: an analysis using GEOS-Chem v11-01 driven by
GEOS-5 meteorology, Geosci. Model Dev., 11, 305–319,
<ext-link xlink:href="https://doi.org/10.5194/gmd-11-305-2018" ext-link-type="DOI">10.5194/gmd-11-305-2018</ext-link>, 2018.</mixed-citation></ref>
      <ref id="bib1.bib58"><label>58</label><mixed-citation>Zhang, L., Jacob, D. J., Boersma, K. F., Jaffe, D. a., Olson, J. R., Bowman,
K. W., Worden, J. R., Thompson, a. M., Avery, M. a., Cohen, R. C., Dibb, J.
E., Flock, F. M., Fuelberg, H. E., Huey, L. G., McMillan, W. W., Singh, H.
B., and Weinheimer, A. J.: Transpacific transport of ozone pollution and the
effect of recent Asian emission increases on air quality in North America: an
integrated analysis using satellite, aircraft, ozonesonde, and surface
observations, Atmos. Chem. Phys., 8, 6117–6136, <ext-link xlink:href="https://doi.org/10.5194/acp-8-6117-2008" ext-link-type="DOI">10.5194/acp-8-6117-2008</ext-link>,
2008.</mixed-citation></ref>
      <ref id="bib1.bib59"><label>59</label><mixed-citation>Zhang, L., Jacob, D. J., Yue, X., Downey, N. V., Wood, D. A., and Blewitt,
D.: Sources contributing to background surface ozone in the US Intermountain
West, Atmos. Chem. Phys., 14, 5295–5309, <ext-link xlink:href="https://doi.org/10.5194/acp-14-5295-2014" ext-link-type="DOI">10.5194/acp-14-5295-2014</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bib60"><label>60</label><mixed-citation>Zhuang,  J. and Rothenberg, D.: cubedsphere: v0.1,
available
at: <ext-link xlink:href="https://doi.org/10.5281/zenodo.1095677" ext-link-type="DOI">10.5281/zenodo.1095677</ext-link>, last access: April 2018.</mixed-citation></ref>
      <ref id="bib1.bib61"><label>61</label><mixed-citation>Zhuang, J., Jacob, D. J., and Eastham, S. D.: FV3_util: v0.1.2, available
at: <ext-link xlink:href="https://doi.org/10.5281/zenodo.1214605" ext-link-type="DOI">10.5281/zenodo.1214605</ext-link>, last access: April 2018.</mixed-citation></ref>

  </ref-list></back>
    <!--<article-title-html>The importance of vertical resolution in the free troposphere for modeling intercontinental plumes</article-title-html>
<abstract-html><p>Chemical plumes in the free troposphere can preserve their identity for more
than a week as they are transported on intercontinental scales. Current
global models cannot reproduce this transport. The plumes dilute far too
rapidly due to numerical diffusion in sheared flow. We show how model
accuracy can be limited by either horizontal resolution (Δ<i>x</i>) or
vertical resolution (Δ<i>z</i>). Balancing horizontal and vertical numerical
diffusion, and weighing computational cost, implies an optimal grid
resolution ratio (Δ<i>x</i>&thinsp;∕&thinsp;Δ<i>z</i>)<sub>opt</sub>&thinsp; ∼ &thinsp;1000
for simulating the plumes. This is considerably higher than current global
models (Δ<i>x</i>&thinsp;∕&thinsp;Δ<i>z</i>&thinsp; ∼ &thinsp;20) and explains the rapid plume
dilution in the models as caused by insufficient vertical resolution. Plume
simulations with the Geophysical Fluid Dynamics Laboratory Finite-Volume
Cubed-Sphere Dynamical Core (GFDL-FV3) over a range of
horizontal and vertical grid resolutions confirm this limiting behavior. Our
highest-resolution simulation (Δ<i>x</i>&thinsp; ≈ &thinsp;25&thinsp;km, Δ<i>z</i>&thinsp; ≈ &thinsp;80&thinsp;m) preserves the maximum mixing ratio in the plume to
within 35&thinsp;% after 8 days in strongly sheared flow, a drastic improvement
over current models. Adding free tropospheric vertical levels in global
models is computationally inexpensive and would also improve the simulation
of water vapor.</p></abstract-html>
<ref-html id="bib1.bib1"><label>1</label><mixed-citation>
Andreae, M. O., Browell, E. V., Garstang, M., Gregory, G. L., Harriss, R. C.,
Hill, G. F., Jacob, D. J., Pereira, M. C., Sachse, G. W., Setzer, a. W.,
Dias, P. L. S., Talbot, R. W., Torres, A. L., and Wofsy, S. C.:
Biomass-burning emissions and associated haze layers over Amazonia, J.
Geophys. Res., 93, 1509–1527, <a href="https://doi.org/10.1029/JD093iD02p01509" target="_blank">https://doi.org/10.1029/JD093iD02p01509</a>, 1988.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>2</label><mixed-citation>
Balaji, V.: Climate Computing: The State of Play, Comput. Sci. Eng., 17,
9–13, <a href="https://doi.org/10.1109/MCSE.2015.109" target="_blank">https://doi.org/10.1109/MCSE.2015.109</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>3</label><mixed-citation>
Bey, I., Jacob, D. J., Yantosca, R. M., Logan, J. A., Field, B. D., Fiore, A.
M., Li, Q., Liu, H. Y., Mickley, L. J., and Schultz, M. G.: Global modeling
of tropospheric chemistry with assimilated meteorology: Model description and
evaluation, J. Geophys. Res.-Atmos., 106, 23073–23095, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>4</label><mixed-citation>
Brasseur, G. P. and Jacob, D. J.: Modeling of Atmospheric Chemistry,
Cambridge University Press, Cambridge, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>5</label><mixed-citation>
Crawford, J. H., Heald, C. L., Fuelberg, H. E., Morse, D. M., Sachse, G. W.,
Emmons, L. K., Gille, J. C., Edward, D. P., Deeter, M. N., Chen, G., Olson,
J. R., Connors, V. S., Kittaka, C., and Hamlin, A. J.: Relationship between
measurements of pollution in the Troposphere (MOPITT) and in situ
observations of CO based on a large-scale feature sampled during TRACE-P, J.
Geophys. Res.-Atmos., 109, 1–10, <a href="https://doi.org/10.1029/2003JD004308" target="_blank">https://doi.org/10.1029/2003JD004308</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>6</label><mixed-citation>
D'Isidoro, M., Maurizi, A., and Tampieri, F.: Effects of resolution on the
relative importance of numerical and physical horizontal diffusion in
atmospheric composition modelling, Atmos. Chem. Phys., 10, 6213,
<a href="https://doi.org/10.5194/acp-10-6213-2010" target="_blank">https://doi.org/10.5194/acp-10-6213-2010</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>7</label><mixed-citation>
Dritschel, D. G. and McKiver, W. J.: Effect of Prandtl's ratio on balance in
geophysical turbulence, J. Fluid Mech., 777, 569–590,
<a href="https://doi.org/10.1017/jfm.2015.348" target="_blank">https://doi.org/10.1017/jfm.2015.348</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>8</label><mixed-citation>
Durran, D. R.: Numerical Methods for Fluid Dynamics: With Applications to
Geophysics, <a href="https://doi.org/10.1007/978-1-4419-6412-0" target="_blank">https://doi.org/10.1007/978-1-4419-6412-0</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>9</label><mixed-citation>
Eastham, S. D. and Jacob, D. J.: Limits on the ability of global Eulerian
models to resolve intercontinental transport of chemical plumes, Atmos. Chem.
Phys., 17, 2543–2553, <a href="https://doi.org/10.5194/acp-17-2543-2017" target="_blank">https://doi.org/10.5194/acp-17-2543-2017</a>, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>10</label><mixed-citation>
Geophysical Fluid Dynamics Laboratory (GFDL): Quickstart Guide: Idealized finite-volume model
<a href="https://www.gfdl.noaa.gov/cubed-sphere-quickstart/" target="_blank">https://www.gfdl.noaa.gov/cubed-sphere-quickstart/</a>, last access: April
2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>11</label><mixed-citation>
Goldstein, A. H., Millet, D. B., McKay, M., Jaeglé, L., Horowitz, L.,
Cooper, O., Hudman, R., Jacob, D. J., Oltmans, S., and Clarke, A.: Impact of
Asian emissions on observations at Trinidad Head, California, during ITCT
2K2, J. Geophys. Res.-Atmos., 109, 1–13, <a href="https://doi.org/10.1029/2003JD004406" target="_blank">https://doi.org/10.1029/2003JD004406</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>12</label><mixed-citation>
Haarsma, R. J., Roberts, M. J., Vidale, P. L., Catherine, A., Bellucci, A.,
Bao, Q., Chang, P., Corti, S., Fučkar, N. S., Guemas, V., Von Hardenberg,
J., Hazeleger, W., Kodama, C., Koenigk, T., Leung, L. R., Lu, J., Luo, J. J.,
Mao, J., Mizielinski, M. S., Mizuta, R., Nobre, P., Satoh, M., Scoccimarro,
E., Semmler, T., Small, J., and Von Storch, J. S.: High Resolution Model
Intercomparison Project (HighResMIP v1.0) for CMIP6, Geosci. Model Dev., 9,
4185–4208, <a href="https://doi.org/10.5194/gmd-9-4185-2016" target="_blank">https://doi.org/10.5194/gmd-9-4185-2016</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>13</label><mixed-citation>
Haiden, T., Janousek, M., Bidlot, J., Ferranti, L., Prates, F., Vitart, F.,
Bauer, P., and Richardson, D. S.: Evaluation of ECMWF forecasts, including
the 2016 resolution upgrade, ECMWF Tech. Memo., 792(January 2017) [online]
Available from:
<a href="http://www.ecmwf.int/sites/default/files/elibrary/2015/15275-evaluation-ecmwf-forecasts-including-2014-2015-upgrades.pdf" target="_blank">http://www.ecmwf.int/sites/default/files/elibrary/2015/15275-evaluation-ecmwf-forecasts-including-2014-2015-upgrades.pdf</a>,
2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>14</label><mixed-citation>
Heald, C. L., Jacob, D. J., Fiore, A. M., Emmons, L. K., Gille, J. C.,
Deeter, M. N., Warner, J., Edwards, D. P., Crawford, J. H., Hamlin, A. J.,
Sachse, G. W., Browell, E. V., Avery, M. A., Vay, S. A., Westberg, D. J.,
Blake, D. R., Singh, H. B., Sandholm, S. T., Talbot, R. W., and Fuelberg, H.
E.: Asian outflow and trans-Pacific transport of carbon monoxide and ozone
pollution: An integrated satellite, aircraft, and model perspective, J.
Geophys. Res.-Atmos., 108,  4804, <a href="https://doi.org/10.1029/2003JD003507" target="_blank">https://doi.org/10.1029/2003JD003507</a>, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>15</label><mixed-citation>
Heald, C. L., Jacob, D. J., Park, R. J., Alexander, B., Fairlie, T. D.,
Yantosca, R. M., and Chu, D. A.: Transpacific transport of Asian
anthropogenic aerosols and its impact on surface air quality in the United
States, J. Geophys. Res.-Atmos., 111, D14310, <a href="https://doi.org/10.1029/2005JD006847" target="_blank">https://doi.org/10.1029/2005JD006847</a>,
2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>16</label><mixed-citation>
Holton, J. R.: An Introduction to Dynamic Meteorology, Elsevier,
2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>17</label><mixed-citation>
Hoyer, S. and Hamman, J. J.: xarray: N-D labeled Arrays and Datasets in
Python, J. Open Res. Softw., 5, 1–6, <a href="https://doi.org/10.5334/jors.148" target="_blank">https://doi.org/10.5334/jors.148</a>, 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>18</label><mixed-citation>
Hudman, R. C., Jacob, D. J., Cooper, O. R., Evans, M. J., Heald, C. L., Park,
R. J., Fehsenfeld, F., Flocke, F., Holloway, J., Hübler, G., Kita, K.,
Koike, M., Kondo, Y., Neuman, A., Nowak, J., Oltmans, S., Parrish, D.,
Roberts, J. M., and Ryerson, T.: Ozone production in transpacific Asian
pollution plumes and implications for ozone air quality in California, J.
Geophys. Res. D Atmos., 109, 1–14, <a href="https://doi.org/10.1029/2004JD004974" target="_blank">https://doi.org/10.1029/2004JD004974</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>19</label><mixed-citation>
Huynh, H. T.: Schemes and constraints for advection, in: Fifteenth
International Conference on Numerical Methods in Fluid Dynamics, 498–503,
Springer, Berlin, 1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>20</label><mixed-citation>
Ingram, W. J.: On the robustness of the water vapor feedback: GCM vertical
resolution and formulation, J. Clim., 15, 917–921,
<a href="https://doi.org/10.1175/1520-0442(2002)015&lt;0917:OTROTW&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0442(2002)015&lt;0917:OTROTW&gt;2.0.CO;2</a>, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>21</label><mixed-citation>
Jablonowski, C. and Williamson, D. L.: A baroclinic instability test case for
atmospheric model dynamical cores, Q. J. Roy. Meteor. Soc., 132, 2943–2975,
<a href="https://doi.org/10.1256/qj.06.12" target="_blank">https://doi.org/10.1256/qj.06.12</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>22</label><mixed-citation>
Jablonowski, C., Lauritzen, P., Nair, R. D., and Taylor, M.: Idealized test
cases for the dynamical cores of Atmo- spheric General Circulation Models: A
proposal for the NCAR ASP 2008 summer colloquium, 74&thinsp;pp., available at:
<a href="http://www-personal.umich.edu/~cjablono/NCAR_ASP_2008_idealized_testcases_29May08.pdf" target="_blank">http://www-personal.umich.edu/~cjablono/NCAR_ASP_2008_idealized_testcases_29May08.pdf</a>
(last access: April 2018), 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>23</label><mixed-citation>
Kent, J., Jablonowski, C., Whitehead, J. P., and Rood, R. B.: Assessing
Tracer Transport Algorithms and the Impact of Vertical Resolution in a
Finite-Volume Dynamical Core, Mon. Weather Rev., 140, 1620–1638,
<a href="https://doi.org/10.1175/mwr-d-11-00150.1" target="_blank">https://doi.org/10.1175/mwr-d-11-00150.1</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>24</label><mixed-citation>
Kent, J., Ullrich, P. A., and Jablonowski, C.: Dynamical core model
intercomparison project: Tracer transport test cases, Q. J. Roy. Meteor.
Soc., 140, 1279–1293, <a href="https://doi.org/10.1002/qj.2208" target="_blank">https://doi.org/10.1002/qj.2208</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>25</label><mixed-citation>
Lane, D. E., Somerville, R. C. J., and Iacobellis, S. F.: Sensitivity of
cloud and radiation parameterizations to changes in vertical resolution, J.
Clim., 13, 915–922,
<a href="https://doi.org/10.1175/1520-0442(2000)013&lt;0915:SOCARP&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0442(2000)013&lt;0915:SOCARP&gt;2.0.CO;2</a>, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>26</label><mixed-citation>
Lauritzen, P. H. and Thuburn, J.: Evaluating advection/transport schemes
using interrelated tracers, scatter plots and numerical mixing diagnostics,
Q. J. Roy. Meteor. Soc., 138, 906–918, <a href="https://doi.org/10.1002/qj.986" target="_blank">https://doi.org/10.1002/qj.986</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>27</label><mixed-citation>
Lauritzen, P. H., Jablonowski, C., Taylor, M. A., and Nair, R. D.: Rotated
Versions of the Jablonowski Steady-State and Baroclinic Wave Test Cases: A
Dynamical Core Intercomparison, J. Adv. Model. Earth Syst., 2, 34&thinsp;pp.,
<a href="https://doi.org/10.3894/james.2010.2.15" target="_blank">https://doi.org/10.3894/james.2010.2.15</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>28</label><mixed-citation>
Liang, Q., Jaeglé, L., Hudman, R. C., Turquety, S., Jacob, D. J., Avery,
M. A., Browell, E. V., Sachse, G. W., Blake, D. R., Brune, W., Ren, X.,
Cohen, R. C., Dibb, J. E., Fried, A., Fuelberg, H. E., Porter, M. J., Heikes,
B. G., Huey, G., Singh, H. B., and Wennberg, P. O.: Summertime influence of
Asian pollution in the free troposphere over North America, J. Geophys.
Res.-Atmos., 112, 1–20, <a href="https://doi.org/10.1029/2006JD007919" target="_blank">https://doi.org/10.1029/2006JD007919</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>29</label><mixed-citation>
Lin, M., Fiore, A. M., Horowitz, L. W., Cooper, O. R., Naik, V., Holloway,
J., Johnson, B. J., Middlebrook, A. M., Oltmans, S. J., Pollack, I. B.,
Ryerson, T. B., Warner, J. X., Wiedinmyer, C., Wilson, J., and Wyman, B.:
Transport of Asian ozone pollution into surface air over the western United
States in spring, J. Geophys. Res.-Atmos., 117, D00V07,
<a href="https://doi.org/10.1029/2011JD016961" target="_blank">https://doi.org/10.1029/2011JD016961</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>30</label><mixed-citation>
Lin, S.-J.: A “Vertically Lagrangian” Finite-Volume Dynamical Core for
Global Models, Mon. Weather Rev., 132, 2293–2307,
<a href="https://doi.org/10.1175/1520-0493(2004)132&lt;2293:AVLFDC&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0493(2004)132&lt;2293:AVLFDC&gt;2.0.CO;2</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>31</label><mixed-citation>
Lin, S.-J. and Rood, R. B.: Multidimensional flux-form semi-Lagrangian
transport schemes, Mon. Weather Rev., 124, 2046–2070, 1996.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>32</label><mixed-citation>
Lindzen, R. S. and Fox-Rabinovitz, M.: Consistent Vertical and Horizontal
Resolution, Mon. Weather Rev., 117, 2575–2583,
<a href="https://doi.org/10.1175/1520-0493(1989)117&lt;2575:CVAHR&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0493(1989)117&lt;2575:CVAHR&gt;2.0.CO;2</a>, 1989.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>33</label><mixed-citation>
Long, M., Eastham, S., Zhuang, J., Yantosca, R., Sulprizio, M., Lundgren, E.,
Martin, R., Auer, B., and Thompson, M.: Since IGC7?: High-Performance
GEOS-Chem (GCHP) and Flexible Chemistry (FlexChem), 8th Int. GEOS-Chem Meet.
(IGC8), Harvard Univ. 2017, available from:
<a href="http://acmg.seas.harvard.edu/presentations/IGC8/talks/MonA_Overview_long_michael.pdf" target="_blank">http://acmg.seas.harvard.edu/presentations/IGC8/talks/MonA_Overview_long_michael.pdf</a>
(last access: April 2018), 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>34</label><mixed-citation>
Lucchesi, R.: File Specification for GEOS-5 FP. GMAO Office Note No. 4
(Version 1.1), 61&thinsp;pp., available at:
<a href="https://gmao.gsfc.nasa.gov/products/documents/GEOS_5_FP_File_Specification_ON4v1_1.pdf" target="_blank">https://gmao.gsfc.nasa.gov/products/documents/GEOS_5_FP_File_Specification_ON4v1_1.pdf</a>
(last access: April 2018), 2017.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>35</label><mixed-citation>
Methven, J. and Hoskins, B.: The advection of high-resolution tracers by low
resolution winds, J. Atmos. Sci., 56, 3262–3285, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>36</label><mixed-citation>
Michalakes, J., Benson, R., Black, T., Duda, M., Govett, M., Henderson, T.,
Madden, P., Mozdzynski, G., Reinecke, A., and Skamarock, W.: Evaluating
Performance and Scalability of Candidate Dynamical Cores for the Next
Generation Global Prediction System, available at:
<a href="https://www2.cisl.ucar.edu/sites/default/files/Michalakes_Slides.pdf" target="_blank">https://www2.cisl.ucar.edu/sites/default/files/Michalakes_Slides.pdf</a>
(last access: April 2018),
2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>37</label><mixed-citation>
Neuman, J. A., Trainer, M., Aikin, K. C., Angevine, W. M., Brioude, J.,
Brown, S. S., De Gouw, J. A., Dube, W. P., Flynn, J. H., Graus, M., Holloway,
J. S., Lefer, B. L., Nedelec, P., Nowak, J. B., Parrish, D. D., Pollack, I.
B., Roberts, J. M., Ryerson, T. B., Smit, H., Thouret, V., and Wagner, N. L.:
Observations of ozone transport from the free troposphere to the Los Angeles
basin, J. Geophys. Res.-Atmos., 117, D00V09, <a href="https://doi.org/10.1029/2011JD016919" target="_blank">https://doi.org/10.1029/2011JD016919</a>,
2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>38</label><mixed-citation>
Newell, R. E., Thouret, V., Cho, J. Y. N., Stoller, P., Marenco, A., and
Smit, H. G.: Ubiquity of quasi-horizontal layers in the troposphere, Nature,
398, 316–319, <a href="https://doi.org/10.1038/18642" target="_blank">https://doi.org/10.1038/18642</a>, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>39</label><mixed-citation>
Nowak, J. B., Parrish, D. D., Neuman, J. A., Holloway, J. S., Cooper, O. R.,
Ryerson, T. B., Nicks, J. K., Flocke, F., Roberts, J. M., Atlas, E., de Gouw,
J. A., Donnelly, S., Dunlea, E., Hübler, G., Huey, L. G., Schauffler, S.,
Tanner, D. J., Warneke, C., and Fehsenfeld, F. C.: Gas-phase chemical
characteristics of Asian emission plumes observed during ITCT 2K2 over the
eastern North Pacific Ocean, J. Geophys. Res.-Atmos., 109, 1–18,
<a href="https://doi.org/10.1029/2003JD004488" target="_blank">https://doi.org/10.1029/2003JD004488</a>, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>40</label><mixed-citation>
Odman, M. T.: A quantitative analysis of numerical diffusion introduced by
advection algorithms in air quality models, Atmos. Environ., 31, 1933–1940,
<a href="https://doi.org/10.1016/S1352-2310(96)00354-8" target="_blank">https://doi.org/10.1016/S1352-2310(96)00354-8</a>, 1997.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>41</label><mixed-citation>
Pecnick, M. J. and Keyser, D.: The effect of spatial resolution on the
simulation of upper-tropospheric frontogenesis using a sigma-coordinate
primitive equation model, Meteorol. Atmos. Phys., 40, 137–149,
<a href="https://doi.org/10.1007/BF01032454" target="_blank">https://doi.org/10.1007/BF01032454</a>, 1989.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>42</label><mixed-citation>
Pope, V. D., Pamment, J. A., Jackson, D. R., and Slingo, A.: The
representation of water vapor and its dependence on vertical resolution in
the Hadley center climate model, J. Clim., 14, 3065–3085,
<a href="https://doi.org/10.1175/1520-0442(2001)014&lt;3065:TROWVA&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0442(2001)014&lt;3065:TROWVA&gt;2.0.CO;2</a>, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>43</label><mixed-citation>
Putman, W. M. and Lin, S.-J.: Finite-volume transport on various cubed-sphere
grids, J. Comput. Phys., 227, 55–78, <a href="https://doi.org/10.1016/j.jcp.2007.07.022" target="_blank">https://doi.org/10.1016/j.jcp.2007.07.022</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>44</label><mixed-citation>
Rastigejev, Y., Park, R., Brenner, M. P., and Jacob, D. J.: Resolving
intercontinental pollution plumes in global models of atmospheric transport,
J. Geophys. Res.-Atmos., 115, <a href="https://doi.org/10.1029/2009JD012568" target="_blank">https://doi.org/10.1029/2009JD012568</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>45</label><mixed-citation>
Schubert, S. D., Rood, R. B., and Pfaendtner, J.: An Assimilated Dataset for
Earth Science Applications, B. Am. Meteorol. Soc., 74, 2331–2342,
<a href="https://doi.org/10.1175/1520-0477(1993)074&lt;2331:AADFES&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0477(1993)074&lt;2331:AADFES&gt;2.0.CO;2</a>, 1993.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>46</label><mixed-citation>
Semakin, A. N. and Rastigejev, Y.: Numerical Simulation of Global-Scale
Atmospheric Chemical Transport with High-Order Wavelet-Based Adaptive Mesh
Refinement Algorithm, Mon. Weather Rev., 144, 1469–1486,
<a href="https://doi.org/10.1175/mwr-d-15-0200.1" target="_blank">https://doi.org/10.1175/mwr-d-15-0200.1</a>, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>47</label><mixed-citation>
Stohl, A., Eckhardt, S., Forster, C., James, P., and Spichtinger, N.: On the
pathways and timescales of intercontinental air pollution transport, J.
Geophys. Res.-Atmos., 107, 1–17, <a href="https://doi.org/10.1029/2001JD001396" target="_blank">https://doi.org/10.1029/2001JD001396</a>, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>48</label><mixed-citation>
Stoller, P., Cho, J. Y. N., Newell, R. E., Thouret, V., Zhu, Y., Carroll, M.
a., Albercook, G. M., Anderson, B. E., Barrick, J. D. W., Browell, E. V.,
Gregory, G. L., Sachse, G. W., Vay, S., Bradshaw, J. D., and Sandholm, S.:
Measurements of atmospheric layers from the NASA DC-8 and P-3B aircraft
during PEM-Tropics A, J. Geophys. Res., 104, 5745, <a href="https://doi.org/10.1029/98JD02717" target="_blank">https://doi.org/10.1029/98JD02717</a>,
1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>49</label><mixed-citation>
Thouret, V., Cho, J. Y. N., Newell, R. E., Marenco, A., and Smit, H. G. J.:
General characteristics of tropospheric trace constituent layers observed in
the MOZAIC program, J. Geophys. Res., 105, 17379, <a href="https://doi.org/10.1029/2000JD900238" target="_blank">https://doi.org/10.1029/2000JD900238</a>,
2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>50</label><mixed-citation>
Tompkins, A. M. and Emanuel, K. A.: The vertical resolution sensitivity of
simulated equilibrium temperature and water-vapour profiles, Q. J. Roy.
Meteor. Soc., 126, 1219–1238, <a href="https://doi.org/10.1002/qj.49712656502" target="_blank">https://doi.org/10.1002/qj.49712656502</a>, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>51</label><mixed-citation>
Ullrich, P. A., Jablonowski, C., and van Leer, B.: High-order finite-volume
methods for the shallow-water equations on the sphere, J. Comput. Phys., 229,
6104–6134, <a href="https://doi.org/10.1016/j.jcp.2010.04.044" target="_blank">https://doi.org/10.1016/j.jcp.2010.04.044</a>, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>52</label><mixed-citation>
Ullrich, P. A., Jablonowski, C., Reed, K. A., Zarzycki, C., Lauritzen, P. H.,
Nair, R. D., Kent, J., and Verlet-Banide, A.: Dynamical Core Model
Intercomparison Project (DCMIP2016) Test Case Document, 2016.

</mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>53</label><mixed-citation>
Warming, R. F. and Hyett, B. J.: The modified equation approach to the
stability and accuracy analysis of finite-difference methods, J. Comput.
Phys., 14, 159–179, <a href="https://doi.org/10.1016/0021-9991(74)90011-4" target="_blank">https://doi.org/10.1016/0021-9991(74)90011-4</a>, 1974.
</mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>54</label><mixed-citation>
Warner, T. T.: Numerical Weather and Climate Prediction, Cambridge University
Press, Cambridge, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>55</label><mixed-citation>
Wild, O. and Prather, M. J.: Global tropospheric ozone modeling: Quantifying
errors due to grid resolution, J. Geophys. Res.-Atmos., 111, D11305,
<a href="https://doi.org/10.1029/2005JD006605" target="_blank">https://doi.org/10.1029/2005JD006605</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>56</label><mixed-citation>
Yang, C., Xue, W., Fu, H., You, H., Wang, X., Ao, Y., Liu, F., Gan, L., Xu,
P., and Wang, L.: 10M-core scalable fully-implicit solver for nonhydrostatic
atmospheric dynamics, in: Proceedings of the International Conference for
High Performance Computing, Networking, Storage and Analysis, p. 6. IEEE
Press, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>57</label><mixed-citation>
Yu, K., Keller, C. A., Jacob, D. J., Molod, A. M., Eastham, S. D., and Long,
M. S.: Errors and improvements in the use of archived meteorological data for
chemical transport modeling: an analysis using GEOS-Chem v11-01 driven by
GEOS-5 meteorology, Geosci. Model Dev., 11, 305–319,
<a href="https://doi.org/10.5194/gmd-11-305-2018" target="_blank">https://doi.org/10.5194/gmd-11-305-2018</a>, 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>58</label><mixed-citation>
Zhang, L., Jacob, D. J., Boersma, K. F., Jaffe, D. a., Olson, J. R., Bowman,
K. W., Worden, J. R., Thompson, a. M., Avery, M. a., Cohen, R. C., Dibb, J.
E., Flock, F. M., Fuelberg, H. E., Huey, L. G., McMillan, W. W., Singh, H.
B., and Weinheimer, A. J.: Transpacific transport of ozone pollution and the
effect of recent Asian emission increases on air quality in North America: an
integrated analysis using satellite, aircraft, ozonesonde, and surface
observations, Atmos. Chem. Phys., 8, 6117–6136, <a href="https://doi.org/10.5194/acp-8-6117-2008" target="_blank">https://doi.org/10.5194/acp-8-6117-2008</a>,
2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>59</label><mixed-citation>
Zhang, L., Jacob, D. J., Yue, X., Downey, N. V., Wood, D. A., and Blewitt,
D.: Sources contributing to background surface ozone in the US Intermountain
West, Atmos. Chem. Phys., 14, 5295–5309, <a href="https://doi.org/10.5194/acp-14-5295-2014" target="_blank">https://doi.org/10.5194/acp-14-5295-2014</a>, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>60</label><mixed-citation>
Zhuang,  J. and Rothenberg, D.: cubedsphere: v0.1,
available
at: <a href="https://doi.org/10.5281/zenodo.1095677" target="_blank">https://doi.org/10.5281/zenodo.1095677</a>, last access: April 2018.
</mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>61</label><mixed-citation>
Zhuang, J., Jacob, D. J., and Eastham, S. D.: FV3_util: v0.1.2, available
at: <a href="https://doi.org/10.5281/zenodo.1214605" target="_blank">https://doi.org/10.5281/zenodo.1214605</a>, last access: April 2018.
</mixed-citation></ref-html>--></article>
