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  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-18-16729-2018</article-id><title-group><article-title>Intercomparison of midlatitude tropospheric and lower-stratospheric water
vapor measurements and comparison<?xmltex \hack{\break}?> to ECMWF humidity data</article-title><alt-title>Midlatitude water vapor intercomparison</alt-title>
      </title-group><?xmltex \runningtitle{Midlatitude water vapor intercomparison}?><?xmltex \runningauthor{S. Kaufmann et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Kaufmann</surname><given-names>Stefan</given-names></name>
          <email>stefan.kaufmann@dlr.de</email>
        <ext-link>https://orcid.org/0000-0002-0767-1996</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Voigt</surname><given-names>Christiane</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8925-7731</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Heller</surname><given-names>Romy</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Jurkat-Witschas</surname><given-names>Tina</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Krämer</surname><given-names>Martina</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2888-1722</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Rolf</surname><given-names>Christian</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5329-0054</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Zöger</surname><given-names>Martin</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8291-345X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Giez</surname><given-names>Andreas</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Buchholz</surname><given-names>Bernhard</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Ebert</surname><given-names>Volker</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-1394-3097</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6 aff7">
          <name><surname>Thornberry</surname><given-names>Troy</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7478-1944</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Schumann</surname><given-names>Ulrich</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-5255-6869</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Deutsches Zentrum für Luft- und Raumfahrt, Institut für Physik der Atmosphäre, 82234 Oberpfaffenhofen, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Johannes Gutenberg-Universität, Institut für Physik der Atmosphäre, 55128 Mainz, Germany</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Forschungszentrum Jülich, Institute for Energy and Climate Research (IEK-7), 52428 Jülich, Germany</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Deutsches Zentrum für Luft- und Raumfahrt, Flight Experiments, 822234 Oberpfaffenhofen, Germany</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Physikalisch-Technische Bundesanstalt Braunschweig, 38116 Braunschweig, Germany</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>NOAA Earth System Research Laboratory, Chemical Sciences Division, Boulder, Colorado, USA</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>Cooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, Boulder, Colorado,  USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Stefan Kaufmann (stefan.kaufmann@dlr.de)</corresp></author-notes><pub-date><day>27</day><month>November</month><year>2018</year></pub-date>
      
      <volume>18</volume>
      <issue>22</issue>
      <fpage>16729</fpage><lpage>16745</lpage>
      <history>
        <date date-type="received"><day>20</day><month>July</month><year>2018</year></date>
           <date date-type="rev-request"><day>24</day><month>July</month><year>2018</year></date>
           <date date-type="rev-recd"><day>11</day><month>October</month><year>2018</year></date>
           <date date-type="accepted"><day>6</day><month>November</month><year>2018</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018.html">This article is available from https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018.pdf</self-uri>
      <abstract>
    <p id="d1e224">Accurate measurement of water vapor in the climate-sensitive region near the
tropopause is very challenging. Unexplained systematic discrepancies between
measurements at low water vapor mixing ratios made by different instruments
on airborne platforms have limited our ability to adequately address a number
of relevant scientific questions on the humidity distribution, cloud
formation and climate impact in that region. Therefore, during the past
decade, the scientific community has undertaken substantial efforts to
understand these discrepancies and improve the quality of water vapor
measurements. This study presents a comprehensive intercomparison of airborne
state-of-the-art in situ hygrometers deployed on board the DLR (German
Aerospace Center) research aircraft HALO (High Altitude and LOng Range Research Aircraft) during the Midlatitude CIRRUS
(ML-CIRRUS) campaign conducted in 2014 over central Europe. The instrument
intercomparison shows that the hygrometer measurements agree within their
combined accuracy (<inline-formula><mml:math id="M1" display="inline"><mml:mo lspace="0mm">±</mml:mo></mml:math></inline-formula>10 % to 15 %, depending on the humidity regime);
total mean values agree within 2.5 %. However, systematic differences on
the order of 10 % and up to a maximum of 15 % are found for mixing
ratios below 10 parts per million (ppm) <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. A comparison of
relative humidity within cirrus clouds does not indicate a systematic
instrument bias in either water vapor or temperature measurements in the
upper troposphere. Furthermore, in situ measurements are compared to model
data from the European Centre for Medium-Range Weather Forecasts (ECMWF)
which are interpolated along the ML-CIRRUS flight tracks. We find a mean
agreement within <inline-formula><mml:math id="M3" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>10 % throughout the troposphere and a
significant wet bias in the model on the order of 100 % to 150 % in
the stratosphere close to the tropopause. Consistent with previous studies,
this analysis indicates that the model deficit is mainly caused by too weak
of a humidity gradient at the tropopause.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e261">Water vapor is one of the most important trace gases in Earth's atmosphere
due to its large influence on the radiation budget and atmospheric dynamics.
It absorbs and emits infrared radiation throughout the entire profile of the
atmosphere (Kiehl and Trenberth, 1997). The radiative effect of small changes
in water vapor concentration is most pronounced in the upper troposphere and
lower stratosphere (UTLS), where absolute <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratios are
2–4 orders of magnitude lower than at ground level (e.g., Ramanathan and
Inamdar, 2006; Solomon et al., 2010; Riese et<?pagebreak page16730?> al., 2012). Besides the direct
radiative effect, water vapor also provides one of the strongest feedback
parameters to temperature changes in the atmosphere (Manabe and Wetherald,
1967; Dessler et al., 2008).</p>
      <p id="d1e277">Additionally, water vapor is the most important parameter for cloud formation
and lifetime. From an energy perspective, clouds not only influence the
radiation balance but also redistribute energy through latent heat during
condensation and evaporation. Changes in latent heat fluxes influence global
dynamics like the Hadley circulation and extratropical storm tracks (Schneider
et al., 2010). The radiative effect of clouds is more complex than the effect
of greenhouse gases due to very inhomogeneous cloud cover and different
microphysical and thus radiative properties of clouds at different altitudes.
The opposing effects of the reflection of solar shortwave radiation and the
trapping of longwave radiation determine the net radiative effect of clouds,
whether cooling or heating, depending on cloud properties, surface albedo,
sun elevation etc. (e.g., Liou, 1986; Lynch, 1996; Lee et al., 2009).</p>
      <p id="d1e280">The various atmospheric processes related to water vapor impose challenges
for its measurement. The measurement accuracy and resolution required to
improve our understanding of the atmosphere strongly depend on the research
question. Regarding the radiative effect of stratospheric <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, the
main challenge is the absolute accuracy at mixing ratios below 10 parts per
million (ppm, equivalent to <inline-formula><mml:math id="M6" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>mol mol<inline-formula><mml:math id="M7" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) since small changes of
less than 1 ppm significantly impact the radiation budget (Solomon et al.,
2010). For cloud effects, the challenge is even bigger, especially in very
cold ice clouds where ice supersaturation and cloud properties are strongly
linked (Jensen et al., 2005; Shilling et al., 2006; Krämer et al., 2009).
A 10 % difference in relative humidity with respect to ice
(RH<inline-formula><mml:math id="M8" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula>), which falls within the combined uncertainty in water vapor
and temperature measurements, can result in substantially different cloud
properties.</p>
      <p id="d1e324">During the past several decades, a number of <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> measurement
intercomparisons during field campaigns including aircraft in situ,
balloon-borne and satellite instruments revealed that the relative
measurement uncertainty in water vapor mixing ratio was significantly higher
than 10 %, even occasionally exceeding 100 % at the lowest mixing
ratios in the lower stratosphere (e.g., Oltmans et al., 2000; Vömel et
al., 2007; Weinstock et al., 2009). These large discrepancies motivated the
comprehensive intercomparison campaign AquaVIT-1 at
the AIDA (Aerosol Interaction and Dynamics in the Atmosphere) cloud chamber
in Karlsruhe in 2007 (Fahey et al., 2014) and the follow-up but as-yet
undocumented campaigns AquaVIT-2 and -3 in 2013 and 2015, respectively. In
the controlled environment of the cloud chamber, the agreement between the
instruments during AquaVIT-1 was better compared to the measurements on the
different airborne platforms but still in the 20 % range for mixing
ratios between 1 and 10 ppm. As a consequence, novel concepts and
instruments (e.g., Thornberry et al., 2013; Kaufmann et al., 2014, 2016;
Buchholz et al., 2017) and improved techniques for in-flight (Rollins et al.,
2011) and ground calibration (Meyer et al., 2015) were developed to improve
the accuracy of <inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> measurements.</p>
      <p id="d1e354">Since space and measurement time on research aircraft are limited and
expensive, intercomparable airborne data sets of water vapor measurements are
scarce (e.g., Kiemle et al., 2008; Jensen et al., 2017a). The most recent
comprehensive intercomparison was conducted in 2011 on the NASA WB-57
high-altitude aircraft during the MACPEX (Mid-latitude Airborne Cirrus Properties EXperiment) campaign (Rollins et al., 2014). Similar
to the present study, five different hygrometers using differing water vapor
detection techniques were mounted on the aircraft. In the dry regime below
10 ppm, instruments were found to typically agree within their stated
combined accuracies. However, the authors argue that the remaining
discrepancies are very likely of systematic nature and result from
undetermined offsets in flight (Rollins et al., 2014). Referring to the
accuracy required to address the questions noted above, it seems that
significant progress has been made in recent years. However, the current
measurement accuracy still limits our ability to appropriately assess
questions regarding, for instance, stratospheric water vapor trends.</p>
      <p id="d1e357">The aim of this study is to provide another step towards a better
understanding of the accuracy of airborne water vapor measurements. We
present a comprehensive intercomparison of the primary airborne
state-of-the-art hygrometers operated by the German research community. This unique data
set is used to assess the performance of the individual instruments and to
provide a solid basis for comparison to the Integrated Forecast System (IFS)
of the European Centre for Medium-Range Weather Forecasts (ECMWF). Section 2
briefly describes the ML-CIRRUS campaign during which five independent in
situ hygrometers were operated simultaneously. Section 3 provides a summary
of the different instruments. The methodology of the intercomparison is
described in Sect. 4, while the intercomparison itself is discussed in
Sect. 5. In addition, this section also includes a comparison of relative
humidity inside of cirrus clouds as well as an intercomparison of in situ
measurements with ECMWF IFS model data.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e363">Measurement technique, range and uncertainty of the different
instruments. Resolution values in brackets are time resolutions used for this
intercomparison.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Instrument</oasis:entry>
         <oasis:entry colname="col2">Technique</oasis:entry>
         <oasis:entry colname="col3">Measured quantity</oasis:entry>
         <oasis:entry colname="col4">Range [ppm]</oasis:entry>
         <oasis:entry colname="col5">Resolution [s]</oasis:entry>
         <oasis:entry colname="col6">Uncertainty</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">AIMS</oasis:entry>
         <oasis:entry colname="col2">Mass spectrometry</oasis:entry>
         <oasis:entry colname="col3">Gas phase <inline-formula><mml:math id="M11" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">1–500</oasis:entry>
         <oasis:entry colname="col5">0.3 (1)</oasis:entry>
         <oasis:entry colname="col6">7 % to 15 %</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3">mixing ratio</oasis:entry>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">FISH</oasis:entry>
         <oasis:entry colname="col2">Lyman-<inline-formula><mml:math id="M12" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> fluorescence</oasis:entry>
         <oasis:entry colname="col3">Total <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">1–1000</oasis:entry>
         <oasis:entry colname="col5">1</oasis:entry>
         <oasis:entry colname="col6">6 % <inline-formula><mml:math id="M14" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.4 ppm</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">SHARC</oasis:entry>
         <oasis:entry colname="col2">TDL</oasis:entry>
         <oasis:entry colname="col3">Gas phase <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">10–50 000</oasis:entry>
         <oasis:entry colname="col5">1</oasis:entry>
         <oasis:entry colname="col6">5 % <inline-formula><mml:math id="M16" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 ppm</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">HAI (1.4 <inline-formula><mml:math id="M17" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m closed-</oasis:entry>
         <oasis:entry colname="col2">TDL</oasis:entry>
         <oasis:entry colname="col3">Total <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">20–40 000</oasis:entry>
         <oasis:entry colname="col5">0.7 (1)</oasis:entry>
         <oasis:entry colname="col6">4.3 % <inline-formula><mml:math id="M19" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3 ppm</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">path channel)</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4"/>
         <oasis:entry colname="col5"/>
         <oasis:entry colname="col6">4.3 % <inline-formula><mml:math id="M20" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3 ppm</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">WARAN</oasis:entry>
         <oasis:entry colname="col2">TDL</oasis:entry>
         <oasis:entry colname="col3">Total <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4">100–40 000</oasis:entry>
         <oasis:entry colname="col5">2.3</oasis:entry>
         <oasis:entry colname="col6">50 ppm or 5 %</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2">
  <title>ML-CIRRUS campaign</title>
      <p id="d1e666">The ML-CIRRUS campaign with the DLR (German
Aerospace Center) research aircraft HALO (High Altitude and LOng Range Research Aircraft) took place in
March and April 2014 with the aircraft based in Oberpfaffenhofen, Germany. A
detailed summary of the scientific goals, the flight strategy and the
instrumentation is given in Voigt et al. (2017). During the campaign period,
HALO performed 16 research flights with 88 flight hours in total. The flights
were designed for a comprehensive characterization of<?pagebreak page16731?> midlatitude cirrus and
contrail cirrus using in situ as well as remote-sensing instruments.
ML-CIRRUS aimed for a better understanding of cirrus cloud formation in
different meteorological conditions (Krämer et al., 2016; Luebke et al.,
2016; Wernli et al., 2016; Urbanek et al., 2017) to improve our estimation of
the radiative impact of cirrus (Krisna et al., 2018) as well as for air
traffic impacts on high cloud cover (Schumann et al., 2017; Grewe et al.,
2017). Therefore, the flight plans were mainly designed to obtain a maximum
number of flight hours either within cirrus clouds for in situ measurements
or approximately 1 km above cirrus for lidar and dropsonde measurements. The
implications of the flight strategy on the water vapor intercomparison are
discussed in Sect. 4.1. Looking for cirrus cloud life cycle under different
meteorological conditions, the flights covered almost the entire region of
central Europe from the northern British coast down to Portugal (Fig. 1).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e671">Flight tracks of 12 research flights during the ML-CIRRUS campaign
in March/April 2014 used for this study. Latitudes between 36
and 57<inline-formula><mml:math id="M22" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N were covered mainly over central and western Europe.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018-f01.png"/>

      </fig>

      <p id="d1e689">To achieve the scientific goals of the mission, the HALO payload for
ML-CIRRUS comprised instruments to measure cloud particles, aerosols, trace
gases and dynamic parameters. The aircraft cabin was equipped with several
novel in situ instruments for trace gases and aerosols, dropsondes and a
differential absorption lidar (DIAL) system for water vapor and cloud
measurements. Furthermore, cloud particles and aerosols were measured in situ
using a set of nine wing probes. Since this paper focusses on the
intercomparison of the in situ water vapor measurements during ML-CIRRUS,
only those instruments will be described here in detail. A full list of
instruments, their descriptions and references can be found in Voigt et
al. (2017).</p>
</sec>
<sec id="Ch1.S3">
  <title>Instruments</title>
      <p id="d1e698">The HALO payload for ML-CIRRUS included five different water vapor
instruments, which provides the opportunity to compare different measurement
methods and a comparison of both gas phase and total water measurements. In
particular, three completely independent measurement principles for water
vapor were used: mass spectrometry (AIMS-<inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>), Lyman-<inline-formula><mml:math id="M24" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>
photofragment fluorescence spectroscopy (FISH) and tunable diode laser
absorption spectroscopy (SHARC, HAI and WARAN). While AIMS-<inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> and
SHARC measured gas phase water vapor via a backward-facing inlet, FISH, HAI
and WARAN measured total water (gas phase <inline-formula><mml:math id="M26" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> evaporated cloud particles)
using forward-facing inlets. A summary of key parameters for each instrument
is given in Table 1.</p>
<sec id="Ch1.S3.SS1">
  <?xmltex \opttitle{AIMS-{$\chem{H_{{2}}O}$}}?><title>AIMS-<inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula></title>
      <p id="d1e759">The Atmospheric Ionization Mass Spectrometer for water vapor (AIMS) is a
linear quadrupole mass spectrometer designed to measure low water vapor
mixing ratios typical for the upper troposphere and lower stratosphere
(Kaufmann et al., 2016; Thornberry et al., 2013) and, in a different
configuration, HCl, HNO<inline-formula><mml:math id="M28" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> and SO<inline-formula><mml:math id="M29" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (Jurkat et al., 2016). The
instrument samples gas phase water vapor through a backward-facing heated
inlet. After passing a pressure regulation valve, sample air is directly
ionized in an electrical discharge ion source. Inside the ion source multiple
ion–molecule reactions form <inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:msub><mml:mfenced open="(" close=")"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:mfenced><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ion clusters with <inline-formula><mml:math id="M31" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M32" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0…2.<?pagebreak page16732?> The
abundance of these ion clusters is then measured by the mass spectrometer and
used to quantify the original water vapor molar mixing ratio in the ambient
air. In order to accurately link the ion count rate with the <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
mixing ratio, the instrument is calibrated in flight by regularly adding a
water vapor standard generated by the catalytic reaction of hydrogen and
oxygen to form <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> on a heated Pt surface (Rollins et al., 2011).
AIMS operates at a measurement range between 1 and 500 ppm with an overall
accuracy of 7 % to 15 %, mainly depending on the actual water vapor
concentration (Kaufmann et al., 2016). During ML-CIRRUS ambient air was
sampled through 8.5 mm ID Synflex tubing, and a bypass flow was used to
reduce the residence time of air in the inlet line to below 0.2 s. This
results in a real measurement frequency of <inline-formula><mml:math id="M35" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 4 Hz, corresponding to
around 50 m horizontal resolution. In order to achieve the best possible
accuracy of the instrument, it was calibrated once or twice during each
research flight. The stability of the calibration standard was guaranteed by
six ground reference measurements against a MBW 373LX dew point mirror during
the campaign period.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>FISH</title>
      <p id="d1e863">FISH (Fast In situ Stratospheric Hygrometer) is a closed-cell Lyman-<inline-formula><mml:math id="M36" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>
photofragment fluorescence hygrometer which has been operated on various
research aircraft for more than 20 years (Meyer et al., 2015; Schiller et
al., 2009). The operating principle of the instrument is described in detail
by Zöger et al. (1999). It uses the Lyman-<inline-formula><mml:math id="M37" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> radiation of an UV
lamp at 121.6 nm to dissociate water molecules into single H atoms and
excited-state OH molecules. Returning to the ground state, the OH molecules
emit radiation at a wavelength between 285 and 330 nm. The intensity of this
radiation is proportional to the water vapor molar mixing ratio in the
measurement cell and is quantified using a photomultiplier tube. FISH is
calibrated regularly at ground level to relate the measured signal to the water
vapor mixing ratio using a MBW DP30 dew point mirror as a reference instrument. A
detailed description of the calibration procedure can be found in Meyer et
al. (2015). FISH is able to measure water vapor mixing ratios in a range from
1 to 1000 ppm. The overall uncertainty during ML-CIRRUS was determined to be
6 % relative and <inline-formula><mml:math id="M38" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.4 ppm absolute offset uncertainty. FISH was
connected to a forward-facing inlet to sample total water. The pressure
difference between inlet (static <inline-formula><mml:math id="M39" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> dynamic) and gas exhaust (only static)
ensures a flow rate &gt; 10 standard L min<inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and thus allows
for fast measurements in UTLS and cirrus conditions.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS3">
  <title>SHARC</title>
      <p id="d1e913">SHARC (Sophisticated Hygrometer for Atmospheric ResearCh) is a tunable diode
laser (TDL) hygrometer developed at DLR Flight Experiments. It is a closed-cell
hygrometer which uses the absorption line of water vapor at
1.37 <inline-formula><mml:math id="M41" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. To cover a wide humidity range, SHARC uses a dual-path
Herriott type cell with a single-pass absorption length of approximately
0.17 m and a multi-pass absorption length of approximately 8 m. The cell is
completely fiber-coupled to minimize parasitic absorption outside the
measurement volume and has a very compact volume of 83 cm<inline-formula><mml:math id="M42" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>. The
measurement range is from 10 to 50 000 ppm, constrained by the detection
limit of the absorption signal at low water vapor mixing ratios. The overall
uncertainty is 5 % relative and <inline-formula><mml:math id="M43" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1 ppm absolute offset uncertainty.
SHARC was operated with a 6.35 mm backward-facing stainless-steel inlet
during ML-CIRRUS sampling gas phase <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> with a total flow of
15 standard L min<inline-formula><mml:math id="M45" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at ground level, decreasing to
1.5 standard L min<inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> at the highest flight levels. The real-time data
reduction uses a multi-line Voigt fit at 5 Hz to calculate the water vapor
mixing ratio. For the intercomparison, the data were averaged to 1 Hz. The
instrument was calibrated on the ground against a MBW 373LX dew point mirror.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>HAI</title>
      <p id="d1e984">HAI (Hygrometer for Atmospheric Investigations) is a four-channel TDL
hygrometer which uses two different absorption wavelengths (1.37
and 2.6 <inline-formula><mml:math id="M47" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m) in both closed- and open-cell geometries (Buchholz et
al., 2017). HAI uses a complete physical model in combination with spectral
water absorption line parameters mostly measured at the
Physikalisch-Technische Bundesanstalt Braunschweig (PTB) (Pogány et al., 2015) and
monitors pressure, temperature and absorption path length in order to
calculate the water vapor concentration for a given absorption spectrum
without prior calibration. The accuracy of this approach was verified
recently by a side-by-side comparison (Buchholz et al., 2014) of a previous
PTB laser absorption spectrometer with the German national primary humidity
standard. HAI has 1.5 m optical path length for the closed cell and 4.2 m
for the open path. For this work, we use data from the 1.37 <inline-formula><mml:math id="M48" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m
closed-cell channel of HAI in the range of 20 to 40 000 ppm since only that
channel provided data within the required uncertainty margin during
ML-CIRRUS. The overall uncertainty for this channel is 4.3 % relative and
<inline-formula><mml:math id="M49" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>3 ppm absolute offset uncertainty. The closed cell was connected to a
12.7 mm forward-facing stainless-steel inlet and was actively pumped. The
effective time resolution of the instrument is 0.7 s, corresponding to a
spatial resolution at flight altitude of around 150 m.</p><?xmltex \hack{\newpage}?>
</sec>
<?pagebreak page16733?><sec id="Ch1.S3.SS5">
  <title>WARAN</title>
      <p id="d1e1015">The WARAN (WAter vapoR ANalyzer) instrument consists of a commercial WVSS-II
(SpectraSensors Inc., USA) tunable diode laser instrument in combination with
a custom inlet and an additional pump for the flow through the measurement
cell (Kaufmann et al., 2014; Groß et al., 2014). While the instrument was
operated on other campaigns parallel to a frost point hygrometer (Heller et
al., 2017), during ML-CIRRUS the WARAN was integrated in the AIMS rack and
connected to a forward-facing inlet to sample total water. The inlet pylon
was the same as used for AIMS-<inline-formula><mml:math id="M50" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. As for the other instruments
operating with a forward-facing inlet, only cloud-free measurement sequences
are used for the intercomparison. The instrument was calibrated on the ground
after the ML-CIRRUS campaign using a MBW 373LX dew point mirror as a reference.
Due to the high detection limit of the instrument (&gt; 50 ppm,
stated by the manufacturer), the intercomparison of this instrument is
limited to tropospheric conditions. During ML-CIRRUS the WARAN was mainly
used to detect cloud water. Due to the enhancement of ice particles in the
inlet by a factor between 20 and 35, measured total-water mixing ratios are
relatively high (Afchine et al., 2018). Hence the instrument detection limit
allows for cloud water quantification for most clouds except for very thin
cirrus.</p>
</sec>
<sec id="Ch1.S3.SS6">
  <title>Additional instrumentation</title>
      <p id="d1e1037">For data evaluation with respect to relative humidity, cloud detection and
model intercomparison, we use additional parameters measured on board HALO
during ML-CIRRUS. Static pressure and static temperature are measured by the
Basis HALO Measurement and Sensor System (BAHAMAS; Krautstrunk and Giez,
2012; Giez et al., 2017). The accuracy of the pressure sensor is 0.3 hPa;
the accuracy of the static temperature measurement is 0.5 K. The SHARC
hygrometer (see Sect. 3.3) is also part of BAHAMAS. Cloud detection was done
using data from the Cloud and Aerosol Spectrometer with Detection of
Polarization (CAS-DPOL), which was mounted under the wing of HALO (Baumgardner
et al., 2001; Voigt et al., 2017). The cloud probe measures particles in a
size range between 0.5 and 50 <inline-formula><mml:math id="M51" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m and is thus sensitive
to natural cirrus as well as contrail ice particles.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Methodology and conditions for intercomparison</title>
      <p id="d1e1054">Similar to previous approaches (e.g., Rollins et al., 2014; Fahey et
al., 2014; Meyer et al., 2015) we use the data set from the entire
ML-CIRRUS campaign in order to achieve good statistics. This section
describes the framework of the intercomparison and the methodology of the
data evaluation including the determination of a water vapor reference value.</p><?xmltex \hack{\newpage}?>
<sec id="Ch1.S4.SS1">
  <title>Flight strategy</title>
      <p id="d1e1063">A discussion of the flight strategy during ML-CIRRUS is important since the
campaign did not aim for a statistically uniform sampling in terms of water
vapor but rather the investigation of cirrus clouds. The flight patterns
typically consist of three components:
<list list-type="order"><list-item>
      <p id="d1e1068">sampling inside cirrus clouds in order to obtain in situ information on
particle distribution and their interaction with trace gases and aerosols,</p></list-item><list-item>
      <p id="d1e1072">remote-sensing segments of cirrus clouds by lidar and radiation measurements
where HALO flew <inline-formula><mml:math id="M52" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 km above the cirrus,</p></list-item><list-item>
      <p id="d1e1083">transferring flight
segments to approach specific weather systems like warm conveyor belts or
mountain lee wave regions over western Europe (dark blue and magenta flight
tracks in Fig. 1).</p></list-item></list>
In total, we have around 160 000 1 Hz data points in the UTLS with
<inline-formula><mml:math id="M53" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratios between 3 and 1000 ppm. Of those data points,
approximately 22 % are in stratospheric conditions
(<inline-formula><mml:math id="M54" display="inline"><mml:mi mathvariant="italic">θ</mml:mi></mml:math></inline-formula> &gt; 350 K), and 33 % are in-cloud measurements.</p>
      <p id="d1e1107">The dedicated search for cirrus conditions leads to a higher detection
frequency of both in-cirrus and above-cirrus sampling relative to their
natural occurrence. Since we expect the mode value of the RH<inline-formula><mml:math id="M55" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> distribution to
be close to 100 % inside cirrus (e.g., Ovarlez et al., 2002; Jensen et
al., 2017b), this allows for an independent check of the absolute values of
the gas phase water vapor measurements. However, extensive in situ sampling
in cirrus limits the data for intercomparison of total and gas phase
instruments. The remote-sensing legs and the transfer segments provide a
comprehensive water vapor data set within the lower stratosphere. The lidar
requires a certain vertical distance from the cirrus upper edge; hence most
of the stratospheric data were sampled roughly 1 km above that level.
Directly above cirrus level fewer data points are sampled. During the
transfer segments, flight altitude and horizontal position of the aircraft
are independent of meteorological conditions; however, due to the typical
high flight altitude of HALO, most of these data points are within the lower
stratosphere.</p>
      <p id="d1e1119">Overall, the ML-CIRRUS flight strategy shifts the sampling of water vapor
compared to unbiased sampling of the UTLS in a way that there is a higher
detection frequency of humid upper-tropospheric air within cirrus clouds,
higher detection frequency of stratospheric measurements at a distance of
around 1 to 1.5 km to the tropopause and only a small detection frequency of
data in dry tropospheric conditions and directly above the tropopause.
However, the measurement strategy should only affect the amount of data in
certain water vapor ranges and not the performance of each instrument within
its specification.</p><?xmltex \hack{\newpage}?>
</sec>
<?pagebreak page16734?><sec id="Ch1.S4.SS2">
  <title>Data processing and filtering</title>
      <p id="d1e1129">In order to construct a consistent data set from all five water vapor
instruments on board HALO, the specific time resolutions and response
characteristics are considered for each instrument. The goal is to retain as
much information as possible while minimizing data-processing-related
artifacts. Since all instruments reported data either with a non-uniform
frequency or in 1 Hz intervals, the latter was used to unify the data. For
AIMS, the 1 Hz data are created by averaging over three data points. Data
from FISH are on a 1 Hz integer time basis. For SHARC and HAI, the 1 Hz
resolution data are interpolated onto integer values. The only instrument
with a lower time resolution than 1 Hz is the WARAN with <inline-formula><mml:math id="M56" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.4 Hz. Since it is not useful to interpolate this data set onto a 1 Hz
interval, each measured value is assigned to the closest integer time value.
This processing allows comparison of the <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> measurements directly
without imposing any substantial interpolation artifacts in the measured
values which could affect the interpretation of the intercomparison.</p>
      <p id="d1e1152">Since three instruments (FISH, HAI and WARAN) measured total water, cloud
sequences were filtered out for the comparison of gas phase <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>.
The cloud filtering was done in a two-step process using both the total water
measurements themselves and cloud probe particle measurements by the
CAS-DPOL. To make sure that in-cloud data are definitely filtered out, all
data with total water concentrations above saturation are flagged as
“in-cloud”. However, this implies that supersaturated cloud-free conditions
are left out as well. As a quality check for the filtering procedure, particle
concentrations measured by the CAS-DPOL are used to double-check the cloud
mask. In this step, very few additional data points are rejected, which might
be due to very thin sublimating clouds or the different positions of cloud
probe under the wing and water vapor inlets at the top fuselage.</p>
      <p id="d1e1168">Further data filtering was applied manually in order to clear data that
suffer from obvious sampling artifacts. Concerning AIMS, the pressure
regulation of the instrument (Kaufmann et al., 2016) during ML-CIRRUS was not
fast enough to compensate for the pressure drop during the fast first ascent
on each flight. For this reason, <inline-formula><mml:math id="M59" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> data in that region are not
reliable and not included in the archived data set. Furthermore, there are a
few ascent and descent sequences where one or more instruments showed a
significant time lag of a couple of seconds compared to the other
instruments. The causes of these lags and their intermittent occurrence are
not clear, and the respective sequences are filtered out.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Reference value</title>
      <p id="d1e1190">The determination of a reference value for the intercomparison is guided by
various considerations. One possibility is the agreement on a common
reference instrument. The airborne intercomparison during MACPEX (Rollins et
al., 2014), for example, used the Harvard Lyman-<inline-formula><mml:math id="M60" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> as a single instrument
reference. However this approach is complicated for the instrument
combination deployed during ML-CIRRUS since there was no instrument on HALO
which measured gas phase <inline-formula><mml:math id="M61" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> and simultaneously covered the
complete range of mixing ratios. For that reason, we follow the approach of
the AquaVIT campaign described in Fahey et al. (2014), where the mean value
of a set of instruments was used as a reference. This allows for a combined
intercomparison of data in the lower stratosphere (AIMS, FISH) and in the
upper troposphere in cirrus clouds (AIMS, SHARC) and clear sky (AIMS, FISH,
SHARC, HAI). We further compare the middle troposphere at higher
<inline-formula><mml:math id="M62" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratios (SHARC, HAI, WARAN). The reference value for each
1 s step is calculated as the mean of AIMS, FISH, SHARC and HAI data points
with the condition that at least two instruments provided valid data for a
single time step. For the lower stratosphere, the reference is the mean value
of AIMS and FISH measurements. For the troposphere, generally all four
instruments are used for the calculation of the reference except for cloud
sequences and depending on data availability. Data from the WARAN are not
included in the reference calculation since their uncertainty is
significantly higher.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p id="d1e1228">Water vapor molar mixing ratio measurements for the research flight
on 3 April 2014. AIMS (black) and SHARC (green) measured in situ gas phase
<inline-formula><mml:math id="M63" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, while FISH (blue), HAI (orange) and WARAN (red) measured total
water. Panels <bold>(a)</bold> and <bold>(b)</bold> are profiles of <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> in situ measurements
plotted against potential temperature, showing the descent between
54 904 and 58 522 s and the descent between 59 139
and 61 398 s, respectively. Panel <bold>(c)</bold> is the time series of the complete flight including
the HALO flight altitude in gray.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018-f02.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p id="d1e1274">Scatterplots of data from the five in situ water vapor instruments
on HALO during ML-CIRRUS. <bold>(a)</bold> Clear-sky measurements of AIMS and
FISH covering the stratosphere and upper troposphere, <bold>(b)</bold> AIMS and SHARC
measuring gas phase <inline-formula><mml:math id="M65" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. This plot thus includes in-cloud gas phase
<inline-formula><mml:math id="M66" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> data. <bold>(c)</bold> HAI vs. FISH for clear-sky upper-tropospheric
mixing ratios. <bold>(d)</bold> WARAN vs. SHARC data extending up to
10 000 ppm with a lower cutoff of the WARAN at 100 ppm. The strong wet
bias of the WARAN that occasionally occurs during the first ascent of the
plane is marked orange. These data points are left out for the further
intercomparison.</p></caption>
          <?xmltex \igopts{width=355.659449pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018-f03.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p id="d1e1325">Relative difference of the measurements of AIMS, FISH, SHARC, HAI
and WARAN from the mean <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> molar mixing ratio value which is used as
a reference (details see text). The small dots are the single measurement
points (1 Hz values). The big squares, triangle and circle are mean values
of the relative difference for specific bins of <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratio. The
broad bars represent the 25th–75th percentile, while the narrow bars stand
for the 10th–90th percentile within the bins. All points with a deviation
between <inline-formula><mml:math id="M69" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1 % and <inline-formula><mml:math id="M70" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>1 % fall on the <inline-formula><mml:math id="M71" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>1 line. Values in the gray
box on the left-hand side represent the overall mean values for the
different instruments.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018-f04.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
</sec>
<?pagebreak page16735?><sec id="Ch1.S5">
  <title>Intercomparison</title>
      <p id="d1e1391">The basis for the intercomparison of <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> data during ML-CIRRUS is
time series from each instrument, an example sequence of which is shown in
Fig. 2c for the flight on 3 April 2014. For all total-water instruments, only
cloud-free data are used for the intercomparison. This flight aimed for in
situ and remote measurements of thin cirrus over Germany which were
potentially influenced by Saharan dust (Weger et al., 2018). Flight altitude
and water vapor mixing ratios in Fig. 2 show the alternation of tropospheric
in situ legs (<inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M74" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 30…120 ppm) and lidar legs in the
stratosphere (<inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M76" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5 ppm). Except for the WARAN, which
seems to measure too high at the beginning of the flight, all instruments
agree reasonably well in both upper troposphere and lower stratosphere.
Figure 2a shows a profile for the upper troposphere and lower stratosphere
using data from the second descent (indicated by dotted lines in Fig. 2c).
The instruments follow the same structures in both regions with a much higher
variation in <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratios in the upper troposphere. The
agreement also holds for the second profile down to 3 km altitude (Fig. 2b);
however mixing ratios there are too high to be measured by AIMS and FISH. The
short ascent to 8 km after the profile shows a significant deviation between
SHARC, HAI and WARAN. Both total-water instruments (HAI and WARAN) measure
higher values than the SHARC, which is most likely due to wet contamination of
their measurement cells when encountering liquid clouds during the descent.
Sequences with such contamination are identified for the entire data set and
filtered out for the intercomparison (less than 1 % of the data).</p>
<sec id="Ch1.S5.SS1">
  <title>Correlation of single instruments</title>
      <p id="d1e1466">To investigate the overall performance of the different measurement systems,
12 ML-CIRRUS flights were combined similar to the one shown in Fig. 2.
This complete data set is used to produce the scatterplots in Fig. 3, where
selections of four combinations of instrument pairs are displayed. The
scatterplot of AIMS and FISH in Fig. 3a shows a very close correlation from
below 4 ppm up to <inline-formula><mml:math id="M78" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 600 ppm corresponding, to the upper limit
of AIMS. For stratospheric mixing ratios below 10 ppm the correlation
broadens, with AIMS exhibiting a tendency to higher humidity values and FISH
to lower humidity values. Figure 3b shows the correlation between AIMS and
SHARC, the two instruments measuring solely gas phase <inline-formula><mml:math id="M79" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>, and is thus
the only correlation plot where in-cloud data are displayed together with
clear-sky data. Consistent with Fig. 3a this correlation is very<?pagebreak page16736?> narrow,
slightly widening only for the high concentrations at the upper AIMS
measurement limit. A similar narrow correlation is found for HAI vs. FISH
(Fig. 3c) from 20 ppm up to 1000 ppm. For all three scatterplots
(Fig. 3a–c) correlation coefficients are higher than 0.99. In contrast to
panels a–c, Fig. 3d spans the range to higher humidity from 10 to
10 000 ppm, displaying data from WARAN and SHARC. Between 100 and 300 ppm,
the WARAN shows a slight dry bias, which disappears for higher mixing ratios.
Compared to the other instruments, the WARAN exhibits a significantly larger
scatter, with complete sequences lying well above the one-to-one line. These
sequences are associated with initial ascent during the flights, where the
WARAN occasionally shows a wet bias (data points marked orange in Fig. 3d).
These data points are omitted from the intercomparison. The dry bias and
larger scatter are also reflected in the correlation coefficient, which is
0.94 for Fig. 3d. The comparison with WARAN measurements during other
campaigns suggests that the deviations are likely caused by systematic
offsets in the original calibration of the instrument. Thus, the analysis is
probably only valid for this specific instrument during the ML-CIRRUS
campaign. Overall, the correlation plots indicate a good agreement for AIMS,
FISH, SHARC and HAI throughout the entire campaign.</p>
</sec>
<sec id="Ch1.S5.SS2">
  <title>Deviation with respect to reference value</title>
      <?pagebreak page16737?><p id="d1e1495">In order to quantify the performance of each instrument, the deviations of
each instrument from the reference value (see Sect. 4.3) are displayed in
Fig. 4, similar to previous studies (Fahey et al., 2014; Rollins et al.,
2014). On the <inline-formula><mml:math id="M80" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis, the <inline-formula><mml:math id="M81" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> reference value is shown. The
<inline-formula><mml:math id="M82" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis denotes the relative difference for each instrument from that
reference value. The small dots are the measured 1 Hz values; the big
symbols are mean values for logarithmic bins in <inline-formula><mml:math id="M83" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>. Additionally,
the broad bars represent the interquartile range in each bin, and the narrow
bars are the 10th–90th percentiles. In the gray box on the left, mean values
and respective percentiles for the entire data set of each instrument are
shown. As shown in Table 2, the mean deviations of AIMS, FISH, SHARC and HAI
are below 2.5 %, indicating that there is no consistent systematic bias
when averaging over the entire data set. The situation looks different for
the WARAN instrument, where the dry bias at low <inline-formula><mml:math id="M84" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratios
can be clearly seen in the <inline-formula><mml:math id="M85" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>-resolved deviation but not in the
overall mean (Fig. 4e).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p id="d1e1568">Statistic summary of the five instruments including number of points
entering the comparison, mean deviation and spread of the data.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1"/>
         <oasis:entry colname="col2">Number of</oasis:entry>
         <oasis:entry colname="col3">Mean deviation from</oasis:entry>
         <oasis:entry colname="col4">Spread: quartiles (10th<inline-formula><mml:math id="M86" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula>90th</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Instrument</oasis:entry>
         <oasis:entry colname="col2">data points</oasis:entry>
         <oasis:entry colname="col3">reference [%]</oasis:entry>
         <oasis:entry colname="col4">percentiles) [%]</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">AIMS</oasis:entry>
         <oasis:entry colname="col2">151 947</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M87" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1.4</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M88" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.2<inline-formula><mml:math id="M89" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>5.3 (<inline-formula><mml:math id="M90" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>5.8<inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>9.5)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">FISH</oasis:entry>
         <oasis:entry colname="col2">94 392</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M92" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.2</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M93" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.6<inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>0.6 (<inline-formula><mml:math id="M95" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>9.0<inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>3.6)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">SHARC</oasis:entry>
         <oasis:entry colname="col2">149 741</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M97" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.4</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M98" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.6<inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>0.6 (<inline-formula><mml:math id="M100" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>6.4<inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>3.1)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">HAI</oasis:entry>
         <oasis:entry colname="col2">92 277</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M102" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>2.3</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M103" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.4<inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>3.1 (<inline-formula><mml:math id="M105" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>2.1<inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>6.4)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">WARAN</oasis:entry>
         <oasis:entry colname="col2">19 550</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M107" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>7.5</oasis:entry>
         <oasis:entry colname="col4"><inline-formula><mml:math id="M108" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.3<inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>-</mml:mo></mml:mrow></mml:math></inline-formula>1.7 (<inline-formula><mml:math id="M110" display="inline"><mml:mo lspace="0mm">-</mml:mo></mml:math></inline-formula>20.3<inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:mo>/</mml:mo><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>4.1)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e1899">When looking at Fig. 4a and b in more detail, the agreement between AIMS and FISH
in the lower stratosphere below 10 ppm seems good with single values of both
instruments mostly falling within <inline-formula><mml:math id="M112" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>15 %. Since these are the only two
instruments measuring in the low ppm range, the plot is a direct comparison
of both instruments. In fact, there is a systematic difference between both
instruments for humidity conditions between 4 and 10 ppm. In that region the
mean values of the instruments differ by 4 % to 16 %, with AIMS measuring
higher and FISH measuring lower mixing ratios. Interestingly, the difference
between the instruments for the driest conditions (3.5 to 4.5 ppm) is
smaller than for the next several bins (2.4 % vs. 6.5 %). However,
the spread in the data is too large to judge if this difference is
significant. Examining all of the time series plots from the campaign (not
shown) reveals that there are some distinct stratospheric legs where AIMS is up to 1 ppm
higher than FISH (corresponding to a relative deviation of
<inline-formula><mml:math id="M113" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 %). The reason for this deviation is not completely
clear; one explanation could be a contamination of the AIMS vacuum system.
However, it is unlikely that this is the only cause since the behavior
changes occasionally from one leg to another within the same flight. For
upper-tropospheric measurements (where more than the two instruments
contribute to the reference value), the agreement of the mean values with the
reference is better than 5 %. The same holds for the SHARC measurements
(Fig. 4c) throughout its complete range with a slight tendency to lower
mixing ratios (3 % to 4 %) compared to the reference between 30 and 200 ppm.
HAI data (Fig. 4d) also fall in the same range of variation, with mean
values being consistently slightly higher by about 3 % than the reference
value in the range between 30 and 2000 ppm. For both SHARC and HAI, the
single measurement scatter is within <inline-formula><mml:math id="M114" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>20 % with respect to the
reference. Considering the fact that all four instruments contribute to the
reference value, one can state that FISH and SHARC tend to consistently
report slightly lower mixing ratios than AIMS and HAI. The WARAN measurements
(Fig. 4e) fall off compared to the other four instruments, exhibiting a
significant low bias for mixing ratios below 300 ppm. However, these data are
still within the uncertainty specifications of the instrument (see Table 1).</p>
</sec>
<sec id="Ch1.S5.SS3">
  <title>Comparison of relative humidity in clouds</title>
      <p id="d1e1929">The comparison of relative humidity measurements in clouds can be considered
as a further measure for the quality of the <inline-formula><mml:math id="M115" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> measurements which
is independent from any kind of reference value. In contrast to measurements
in liquid clouds, much stronger deviations of RH<inline-formula><mml:math id="M116" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> from saturation are
possible in ice clouds due to their higher thermodynamic inertia. RH<inline-formula><mml:math id="M117" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> inside cirrus clouds can be very variable
due to advection as well as small-scale turbulence inside the cloud (e.g.,
Gettelman et al., 2006; Petzold et al., 2017). However, if the measurements
include a sufficiently even sampling of meteorological conditions, a
distribution of RH<inline-formula><mml:math id="M118" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> with a mode value close to 100 % would be expected. In
order to calculate RH<inline-formula><mml:math id="M119" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> from the measured <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratios, we have
used the static temperature and static pressure measurements on board HALO to
calculate water vapor partial pressure and saturation pressure. The
saturation pressure over ice is calculated using Eq. (7) from Murphy and
Koop (2005).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p id="d1e1997">PDFs of relative humidity with respect to ice calculated from AIMS
(black) and SHARC (green) data and the static air temperature measurement on
HALO inside cirrus clouds for the entire campaign. Dark green indicates
overlap regions. The cloud flag is the same used for filtering the total
water measurements. The center of the respective distribution is 94 % for
SHARC and 97 % for AIMS.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018-f05.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p id="d1e2008">Mean values for RH<inline-formula><mml:math id="M121" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> inside cirrus measured by AIMS (black) and SHARC
(green) for each ML-CIRRUS flight. Broad bars denote the interquartile range;
narrow bars denote the 10th–90th-percentile range.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018-f06.png"/>

        </fig>

      <p id="d1e2027">Here, we compare in-cloud measurements of RH<inline-formula><mml:math id="M122" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> for the two water vapor
instruments with backward-facing inlets, AIMS and SHARC (see also Fig. 3b).
In total, more than 50 000 in-cloud data points were acquired during
ML-CIRRUS, with numbers varying between 2000 and 11 000 for individual
flights. The frequency distribution of RH<inline-formula><mml:math id="M123" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> for the entire data set of the
ML-CIRRUS campaign is shown in Fig. 5. Data from both instruments are almost
normally distributed, with mean values slightly below ice saturation. Fitting
a normal distribution to both data sets, they peak at RH<inline-formula><mml:math id="M124" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math id="M125" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 97 % for
AIMS (52 700 data points) and 94 % for SHARC (56 300 data points). The
full width at half<?pagebreak page16738?> maximum of the distribution is 26.7 % for AIMS and 19.4 % for SHARC.
Both distributions are slightly asymmetric with a tail towards higher
supersaturation which is more pronounced in the SHARC measurements. This
agrees with results from Ovarlez et al. (2002), who find similar asymmetric
distributions for temperatures below <inline-formula><mml:math id="M126" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>40 <inline-formula><mml:math id="M127" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.</p>
      <p id="d1e2081">Considering the instrumental uncertainties, both distributions appear
reasonable. However, the question remains whether the slight shift of the
center of the RH<inline-formula><mml:math id="M128" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> distribution relative to 100 % is caused by systematic
instrument biases (<inline-formula><mml:math id="M129" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> and temperature), inlet issues (e.g.,
sucking in and evaporating ice particles) or a sampling bias in the flight
strategy. If the sampling were biased toward either forming/growing cirrus or
evaporating cirrus, one would expect a positive or negative RH<inline-formula><mml:math id="M130" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> bias with
respect to saturation, respectively. During ML-CIRRUS, individual flights
typically targeted specific meteorological conditions, e.g., the updraft
region of warm conveyor belts or mountain wave cirrus. Hence, a sampling bias
for individual flights is very likely. In order to investigate that, Figure 6
shows the mean values for the in-cloud RH<inline-formula><mml:math id="M131" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> distributions of AIMS and SHARC
including interquartile ranges and 10th–90th-percentile ranges for each flight.
For flight nos. 1–5, AIMS and SHARC deviate by 4 % to 8 % with one
exception on flight no. 3, where the deviation is around 20 %. These data
originate from a two-step profile through cirrus clouds with high updraft
velocities over the Balearic Islands. During that flight, there is a
systematic difference between AIMS and SHARC which is most pronounced during
the two cirrus transects (difference of around 20 % compared to
7 % to 10 % during the rest of the flight). From the high updraft
velocity, one would rather expect supersaturation inside the cirrus. For
flight no. 7, there is not enough in-cloud data from AIMS to produce a
reasonable RH<inline-formula><mml:math id="M132" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> distribution. For flight nos. 8, 9 and 10, the
agreement of both instruments is almost perfect, while for the last two
flights AIMS tended to measure slightly lower RH<inline-formula><mml:math id="M133" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> values than SHARC but with
a difference of less than 3 %. The spread of the RH<inline-formula><mml:math id="M134" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> measurements is
similar for both instruments (AIMS interquartile range: 10 % to 20 %; SHARC
interquartile range: 8 % to 17 %), with the lower values for SHARC arising from
a slightly better precision.</p>
      <p id="d1e2152">The observed trend could be an indication of instrumental drift over the
campaign period; however we cannot state which instrument is subject to a
drift. Flights with mean super- or subsaturation are almost evenly
distributed for AIMS, while SHARC measurements are slightly sub-saturated,
especially during the first half of the campaign. From the present data, we
do not have clear evidence for an overall sampling bias during the campaign.
A possible bias affecting RH<inline-formula><mml:math id="M135" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> derived from both instruments could be a bias
in the static temperature measurement on board HALO since we use the same
temperature information for both instruments. However, the median and mean
values of the distributions deviate by less than 6 % from saturation for
most of the flights, indicating that temperature is not significantly off.</p>
</sec>
<sec id="Ch1.S5.SS4">
  <title>Comparison to the ECMWF numerical weather prediction model</title>
      <p id="d1e2171">The extensive ML-CIRRUS in situ data set of upper-tropospheric and
lower-stratospheric humidity further enables an evaluation of the accuracy of UTLS
humidity in the ECMWF (European Centre for Medium-Range Weather Forecasts)
numerical weather prediction (NWP) model. A correct representation of water vapor
is crucial for weather and climate prediction via various pathways. Besides
the<?pagebreak page16739?> troposphere, where water vapor is obviously important for cloud formation
and precipitation, the stratospheric mean state also influences the
predictability in the troposphere (Douville, 2009). Moreover, biases in
modeled stratospheric water vapor can induce a frequently observed cold bias
in the extratropics (e.g., Boer et al., 1992; Stenke et al., 2008; Chen and
Rasch, 2012).</p>
      <p id="d1e2174">The model data used for analysis of ML-CIRRUS are provided by the Integrated
Forecasting System (IFS) of the ECMWF (IFS Version 40r1). For analysis, we
use a combination of analysis data with hourly forecasts starting every 12 h
from the analysis at 00:00 and 12:00 UTC. The data set covers the region of
20–70<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 60<inline-formula><mml:math id="M137" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W–20<inline-formula><mml:math id="M138" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E. The model
includes 137 vertical model levels, with pressure intervals of 18 hPa near
7 km altitude and 7 hPa near 15 km height. For typical flight altitudes
near 11.5 km (200 hPa) the vertical resolution is around 300 m (10 hPa).
The horizontal resolution of the data used is 0.5<inline-formula><mml:math id="M139" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. Higher
horizontal resolution would be available from IFS but would not provide more
information due to the hourly time resolution. The data are interpolated
linearly to the measurement position for a given HALO position (latitude and
longitude) above the WGS84 reference ellipsoid. Vertical interpolation is
performed in the logarithm of pressure fields (which varies more smoothly
than pressure) based on the static pressure measured by HALO-BAHAMAS
(Schumann et al., 2015). The output frequency is 0.1 Hz along the flight
track, resulting in a distance of roughly 2 km between adjacent data points.
The reference <inline-formula><mml:math id="M140" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratio is averaged accordingly over 10 s
intervals. Except for the time resolution, the methodology of the
intercomparison of model data and measurements is the same as used in
Sect. 5.2, simply treating the interpolated model data as a “new” instrument.
In Fig. 7, the relative deviation of the ECMWF data is plotted against the
measured reference <inline-formula><mml:math id="M141" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> value (same method as used for Fig. 4). The
small dots represent the interpolated model data point for each valid
reference value (see Sect. 4.3). Similarly to in Fig. 4, the black triangles
denote bin-wise mean values of the relative difference, while the gray bars and
whiskers represent the interquartile range and the 10th–90th-percentile range,
respectively. In order to get an idea if the sampled air mass is of
stratospheric or tropospheric origin, the individual data points are
color-coded with potential temperature averaged from the HALO onboard measurements.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p id="d1e2242">Relative difference of <inline-formula><mml:math id="M142" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratio between ECMWF
analysis and measurement reference for all ML-CIRRUS flights. Model data are
interpolated in space and time on each flight track. The reference value on
the <inline-formula><mml:math id="M143" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis is the same as in Fig. 4. As in Fig. 4, the triangles, broad bars and narrow bars
represent the mean values, 25th–75th percentiles and 10th–90th percentiles, respectively.
Single data points are color-coded with potential temperature.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018-f07.png"/>

        </fig>

      <p id="d1e2271">As can be seen in Fig. 7, the comparison between the model and measurements
is different in two distinct humidity regimes. At the higher tropospheric
mixing ratios above 30 ppm, there is a remarkably good agreement between
mean bin values, and the interquartile range is mostly within <inline-formula><mml:math id="M144" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>10 %.
The single values exhibit a larger scatter, resulting in 10th and 90th
percentiles of around <inline-formula><mml:math id="M145" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>30 % and <inline-formula><mml:math id="M146" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>20 %, respectively. This could
be expected considering the high natural variability in water vapor compared
to the model resolution. The distribution of mean relative differences
suggests a slight bias in that region, with ECMWF being slightly lower. With
a mean value near 3 %, this bias is very small when considering the
overall scatter of the data and the interpolation of the model onto the
flight path. The interpolation procedure is also the reason for the single
data points resembling the shape of a mirrored S. This behavior results from
comparing the measurement signal with high spatial variability with the
rather smooth model data. When using a logarithmic <inline-formula><mml:math id="M147" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> scale and the more
variable measured mixing ratio as a reference on the <inline-formula><mml:math id="M148" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis, it results in an
S-like shape in the individual data points.</p>
      <p id="d1e2310">The character of the intercomparison differs for lower mixing ratios below
30 ppm found in the tropopause region and the lower stratosphere. In that
region, the model significantly overestimates the humidity. The biggest
differences between measurement and model occur at mixing ratios between 5
and 8 ppm, typical values for the region directly above the tropopause. The
maximum difference is found in the bin between 5.5 and 6.5 ppm, where the
mean difference is 115 % (statistics from 382 data points). The
difference decreases again for mixing ratios below 5 ppm, indicating a better
agreement between measurement and model with increasing distance to the
tropopause. The mean difference for the driest bin (3.5 to 4.5 ppm with
2383 data points) of 46 % is less than half of the more humid neighboring
bins. However, it still is significant and positive, meaning that ECMWF shows
a systematic wet bias for the entire probed region in the lower stratosphere
in spring.</p>
      <p id="d1e2313">The maximal differences close to tropopause mixing ratios indicate that the
difference between measurement and model is caused by too weak of a humidity
gradient at the tropopause, partially explained by the model grid resolution
of about 300 m vertically near the tropopause. Here, narrow inversions may
form between subsiding dry stratospheric air and upward mixing of humid cold
tropospheric air (Birner et al., 2002) which might not be covered by the
coarse resolution of a global model. The difference in humidity gradients is
directly evident in the humidity profiles. Figure 8 shows one
ascent (Fig. 8a) and one descent (Fig. 8b) through the entire tropopause
region on 11 April 2014. Consistent with Fig. 7, we observe a good agreement
between model and measurement in the troposphere. Directly above the
tropopause, the humidity gradient in the model is weaker compared to the
measurements for both profiles, resulting in overestimation of water vapor by
the model in that region. This feature is independent from the absolute
height of the tropopause (<inline-formula><mml:math id="M149" display="inline"><mml:mo lspace="0mm">∼</mml:mo></mml:math></inline-formula> 11.8 km in Fig. 8a, <inline-formula><mml:math id="M150" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10.4 km in
Fig. 8b), which is well represented in the model when comparing measured and
modeled temperature profiles. With increasing vertical distance to the
tropopause, measurement and model approach similar values, which is
consistent with the overall intercomparison in Fig. 7. The region above the
tropopause where we observe a significant difference between measurements and
model varies from around 1 km above the tropopause in Fig. 8a to around
3 km in Fig. (8b). Thus, the<?pagebreak page16740?> weaker gradient is certainly no artifact of the
vertical interpolation of the model.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p id="d1e2332">Profiles of water vapor mixing ratio and temperature from in-situ
measurements and the ECMWF model. The blue line is the water vapor reference
value from in-situ observations; the green line is the interpolated ECMWF
model data. Data shown here originate from one ascent <bold>(a)</bold> and one descent
<bold>(b)</bold> through the tropopause on 11 April 2014 (flight #11). The water vapor
profiles agree well in the upper troposphere; in the lower stratosphere we
observe a stronger gradient in the measurements compared to the model. The
vertical position of the thermal tropopause (black: measured by HALO; gray:
ECMWF) is well represented in the model.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/18/16729/2018/acp-18-16729-2018-f08.png"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3"><caption><p id="d1e2350">Relative difference between ECMWF IFS data and measurements for
different potential temperatures.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row>
         <oasis:entry colname="col1">Potential</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
         <oasis:entry colname="col4">Standard deviation</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">temperature</oasis:entry>
         <oasis:entry colname="col2">No. of</oasis:entry>
         <oasis:entry colname="col3">Mean relative</oasis:entry>
         <oasis:entry colname="col4">of relative</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">range [K]</oasis:entry>
         <oasis:entry colname="col2">points</oasis:entry>
         <oasis:entry colname="col3">difference [%]</oasis:entry>
         <oasis:entry colname="col4">difference [%]</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">&gt; 370</oasis:entry>
         <oasis:entry colname="col2">761</oasis:entry>
         <oasis:entry colname="col3">16.9</oasis:entry>
         <oasis:entry colname="col4">8.9</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">360–370</oasis:entry>
         <oasis:entry colname="col2">1087</oasis:entry>
         <oasis:entry colname="col3">36.7</oasis:entry>
         <oasis:entry colname="col4">20.1</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">350–360</oasis:entry>
         <oasis:entry colname="col2">1759</oasis:entry>
         <oasis:entry colname="col3">87.5</oasis:entry>
         <oasis:entry colname="col4">49.1</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">340–350</oasis:entry>
         <oasis:entry colname="col2">1210</oasis:entry>
         <oasis:entry colname="col3">30.0</oasis:entry>
         <oasis:entry colname="col4">29.8</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">330–340</oasis:entry>
         <oasis:entry colname="col2">2213</oasis:entry>
         <oasis:entry colname="col3">11.3</oasis:entry>
         <oasis:entry colname="col4">25.1</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e2491">Our results support previous studies (e.g., Kunz et al., 2014; Dyroff
et al., 2015). The latter study shows a good agreement between measurement
and model for vertical distances to the tropopause of 6 km and higher and
model wet bias between 2 and 6 km above the tropopause for the extratropics.
During ML-CIRRUS, the maximum distance above the tropopause was 3.5 km;
hence the measurements are probably not stratospheric enough to leave the
wet-bias region. However, the trend towards better agreement deeper in the
stratosphere can be seen in the color coding in Fig. 7 as well as in Table 3
where mean difference are binned by potential temperature rather than the
mixing ratio. It turns out that the wet bias strongly peaks at potential
temperatures between 350 and 360 K (mean difference of 88 %), whereas it
decreases from there with increasing altitude in the stratosphere (higher
potential temperature) as well as into the troposphere (lower potential
temperature). Both single profiles and the overall intercomparison allow the
observed differences in lower-stratospheric humidity to be attributed to the
too-weak humidity gradient of ECMWF above the<?pagebreak page16741?> tropopause compared to the
observations in European spring conditions.</p>
</sec>
</sec>
<sec id="Ch1.S6" sec-type="conclusions">
  <title>Discussion and summary</title>
      <p id="d1e2501">We intercompare water vapor measurements from different state-of-the-art in
situ instruments on board the DLR research aircraft HALO during the
midlatitude UTLS field project ML-CIRRUS. It is the first comprehensive
intercomparison of all primary airborne hygrometers operated by the German
research community including three TDL instruments (HAI, SHARC and WARAN),
one mass spectrometer (AIMS) and the established Lyman-<inline-formula><mml:math id="M151" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> hygrometer
FISH. The intercomparison includes a large span of humidity conditions from
lower-stratospheric to lower-tropospheric <inline-formula><mml:math id="M152" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> molar mixing ratios,
with different instruments covering different parts of the mixing ratio
spectrum. This work focusses on the intercomparison of gas phase water vapor
measurements, meaning that only clear-sky data are used from instruments
measuring total water (HAI, FISH and WARAN). The flight strategy of ML-CIRRUS
focused on the investigation of midlatitude cirrus clouds with in situ and
remote-sensing (lidar) instrumentation. Hence, the majority of data points
originate from the midlatitude upper troposphere and lower stratosphere
above Europe and the western Atlantic in spring 2014.</p>
      <p id="d1e2524">The agreement between the in situ instruments, expressed by the relative
difference to a reference value (mean value of at least two instruments), is
generally good and consistent with previous intercomparison studies (Rollins
et al., 2014). For all instruments except the WARAN, the overall mean
deviation from the reference value is below 2.5 %. This is an indication
for the successful efforts to improve the accuracy of UTLS <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
measurements during the past decade, motivated by large discrepancies that
have been found before (Fahey et al., 2014). Still, systematic discrepancies
remain between the instruments in specific regimes which need to be addressed
in order to improve our understanding of the humidity budget in the lowermost
stratosphere or of cirrus formation under very cold conditions (Gao et al.,
2004; Krämer et al., 2009; Jensen et al., 2017a). One major issue is the
difference between FISH and AIMS for stratospheric mixing ratios below
10 ppm. The observation that the mass spectrometer AIMS measures
systematically higher mixing ratios than FISH is similar to the findings
during the MACPEX intercomparison (Rollins et al., 2014). During that
campaign, the maximum difference of bin mean values is 13.7 % in the
range 5.5–6.5 ppm. Although this difference is still within the
combined uncertainty of the instruments, it hampers the detailed
investigation of trends in the lower-stratospheric water vapor budget, which
are of the same order of magnitude and highly uncertain, even in their sign
(e.g., Hegglin et al., 2014; Lossow et al., 2018).</p>
      <p id="d1e2540">We investigate RH<inline-formula><mml:math id="M154" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> measurements in cirrus clouds from AIMS and SHARC as an
independent metric of the absolute accuracy of the <inline-formula><mml:math id="M155" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
measurements. This is not straightforward, as RH<inline-formula><mml:math id="M156" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> in cirrus clouds is known
to differ significantly from saturation depending on the dynamics of the
cloud. Still, considering a sufficiently large database, the data can be
used as an independent indicator of the absolute accuracy of the measurements
under UTLS conditions. Data from both instruments have a mode value close to
ice saturation (less than 10 % difference of mean value for all flights).
An overall instrumental or sampling bias seems unlikely since flights with
mean super- and subsaturation in clouds are almost evenly distributed. The
same holds for a possible bias in the aircraft temperature measurement which
would similarly propagate into the RH<inline-formula><mml:math id="M157" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> distribution. However, we do observe a
drift between the in-cloud measurements of the two instruments over the
course of the measurement campaign. While AIMS measures higher RH<inline-formula><mml:math id="M158" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> values
than SHARC in the beginning of the campaign, mean RH<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">i</mml:mi></mml:msub></mml:math></inline-formula> values agree much
better during the second half of the campaign. When considering the entire
data set (including clear-sky data), this drift is not apparent, which makes a
change in the performance of one instrument unlikely.</p>
      <p id="d1e2602">A comparison of the measured <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> mixing ratios with ECMWF IFS data
is accomplished using the same methodology as for the instrument
intercomparison. The gridded ECMWF data are interpolated in space and time
along the flight path of HALO with a resolution of 0.1 Hz. Measurement and
model show generally good agreement throughout the upper troposphere with
bin-wise mean values of the difference typically within <inline-formula><mml:math id="M161" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>10 %
(consistent with, e.g., Flentje et al., 2007) with a slight tendency towards
a model dry bias which, however, is not statistically significant. Below
mixing ratios of 30 ppm, we observe a significant wet bias in the ECMWF
model with highest mean deviation from the measurements around 6 ppm or at a
potential temperature of 355 K. In that regime, mean
deviations are on the order of 100 % with an interquartile range of 70 to
140 %. The large wet bias of the model in the tropopause region is
consistent with findings in previous studies (e.g., Kunz et al., 2014;
Dyroff et al., 2015). The model wet bias decreases substantially at higher
potential temperatures, leading to a mean difference of only 17 % at
potential temperatures above 370 K. The fact that the model bias shows a
clear maximum at the tropopause indicates that this issue is likely caused by
too strong numerical smoothing reducing humidity gradients near the
tropopause rather than an overall bias of stratospheric mixing ratios. Kunz
et al. (2014) found a similar feature with good agreement between FISH
measurements and ECMWF reanalysis data at altitudes higher than 6 km above
the tropopause. The issue of too-weak gradients at the tropopause is
discussed extensively by, for example, Birner et al. (2002), Gray et al. (2014) and
Saffin et al. (2017). In particular, the lower-stratospheric
wet bias is very sensitive to the horizontal interpolation of the specific
humidity field in the semi-Langrangian IFS model (Diamantakis, 2014), leading
to a too high diffusivity, which in turn<?pagebreak page16742?> causes a cold bias at the
extratropical tropopause (Stenke et al., 2008). However, it is difficult and
cost intensive to address the issue in the model since it would require
adjusting core dynamical model processes or increasing the model resolution
(Saffin et al., 2017; Pope et al., 2001). Additionally, the
model suffers from a lack of assimilated information on lower-stratospheric
water vapor since specific humidity data from radiosondes are only assimilated
below a certain threshold pressure level (depending on the type of sonde; see
Andersson et al., 2007). Given the large model uncertainty in <inline-formula><mml:math id="M162" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
concentrations close to the tropopause, it is difficult, for example, to
correctly evaluate the radiative effects of water vapor in that region where
the atmosphere is very sensitive to even small changes in <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
(Solomon et al., 2010; Riese et al., 2012).</p>
      <p id="d1e2652">Despite the limitation to one-dimensional data for the in situ measurements,
high-spatial-resolution data as obtained from aircraft can help to point out
important small-scale differences which are difficult to assess when
comparing model to satellite data due to their limited (especially vertical)
resolution (e.g., Lamquin et al., 2009). The intercomparison shows that our
approach to comparing in situ data with model data can be particularly useful
for investigating model performance around the tropopause. Hence, it could be
worthwhile to extend this type of intercomparison to reanalysis data like the
new climate reanalysis data set (ERA-5) of the ECMWF or include further NWP
models like the Icosahedral Nonhydrostatic (ICON) model from the
German Weather Service.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e2659">Data are accessible via the HALO database
(<uri>https://halo-db.pa.op.dlr.de/mission/2</uri>) (HALO database, 2018). They
can be accessed after signing a data agreement. Operational meteoro-logical
analyses are archived in the MARS archive at ECMWF
(<uri>https://www.ecmwf.int/en/forecasts/documentation-and-support/
changes-ecmwf-model/ifs-documentation</uri>, ECMWF, 2018)</p>
  </notes><notes notes-type="authorcontribution">

      <p id="d1e2671">SK, CV, RH and TJW performed the AIMS measurements; MK and CR
performed the FISH measurements; MZ and AG performed the SHARC measurements; BB and VE
performed the HAI measurements; US provided and prepared the ECMWF data; and SK performed the study
and wrote the manuscript with help from CV, TT and US. All authors commented
on the manuscript.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e2677">The authors declare that there is no conflict of
interest.</p>
  </notes><notes notes-type="sistatement">

      <p id="d1e2683">This article is part of the special issue “ML-CIRRUS – the
airborne experiment on natural cirrus and contrail cirrus in mid-latitudes
with the high-altitude long-range research aircraft HALO (ACP/AMT
inter-journal SI)”. It is not associated with a conference.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e2689">We thank the DLR flight department and Andreas Minikin for great support
during the campaign and Klaus Gierens for helpful comments on the manuscript.
Support by the Helmholtz Association under contract W2/W3-60 and by the
German Science Foundation within the DFG-SPP HALO 1294 via grant VO1504/4-1
(CV), JU3059/1-1 (TJ), KR 2957/1-1 (MK) and SCHI-872/2-2 (CR) is greatly
acknowledged.<?xmltex \hack{\newline\newline}?> The article processing charges for this
open-access <?xmltex \hack{\newline}?> publication were covered by a Research
<?xmltex \hack{\newline}?> Centre of the Helmholtz Association.<?xmltex \hack{\newline\newline}?>
Edited by: Darrel Baumgardner <?xmltex \hack{\newline}?>Reviewed by: three anonymous
referees</p></ack><ref-list>
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    <!--<article-title-html>Intercomparison of midlatitude tropospheric and lower-stratospheric water vapor measurements and comparison to ECMWF humidity data</article-title-html>
<abstract-html><p>Accurate measurement of water vapor in the climate-sensitive region near the
tropopause is very challenging. Unexplained systematic discrepancies between
measurements at low water vapor mixing ratios made by different instruments
on airborne platforms have limited our ability to adequately address a number
of relevant scientific questions on the humidity distribution, cloud
formation and climate impact in that region. Therefore, during the past
decade, the scientific community has undertaken substantial efforts to
understand these discrepancies and improve the quality of water vapor
measurements. This study presents a comprehensive intercomparison of airborne
state-of-the-art in situ hygrometers deployed on board the DLR (German
Aerospace Center) research aircraft HALO (High Altitude and LOng Range Research Aircraft) during the Midlatitude CIRRUS
(ML-CIRRUS) campaign conducted in 2014 over central Europe. The instrument
intercomparison shows that the hygrometer measurements agree within their
combined accuracy (±10&thinsp;% to 15&thinsp;%, depending on the humidity regime);
total mean values agree within 2.5&thinsp;%. However, systematic differences on
the order of 10&thinsp;% and up to a maximum of 15&thinsp;% are found for mixing
ratios below 10 parts per million (ppm) H<sub>2</sub>O. A comparison of
relative humidity within cirrus clouds does not indicate a systematic
instrument bias in either water vapor or temperature measurements in the
upper troposphere. Furthermore, in situ measurements are compared to model
data from the European Centre for Medium-Range Weather Forecasts (ECMWF)
which are interpolated along the ML-CIRRUS flight tracks. We find a mean
agreement within ±10&thinsp;% throughout the troposphere and a
significant wet bias in the model on the order of 100&thinsp;% to 150&thinsp;% in
the stratosphere close to the tropopause. Consistent with previous studies,
this analysis indicates that the model deficit is mainly caused by too weak
of a humidity gradient at the tropopause.</p></abstract-html>
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