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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-17-7605-2017</article-id><title-group><article-title>Four-dimensional variational inversion of black carbon emissions during ARCTAS-CARB with WRFDA-Chem</article-title>
      </title-group><?xmltex \runningtitle{WRFDA-Chem 4D-Var}?><?xmltex \runningauthor{J. J. Guerrette and D. K. Henze}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Guerrette</surname><given-names>Jonathan J.</given-names></name>
          <email>jonathan.guerrette@colorado.edu</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Henze</surname><given-names>Daven K.</given-names></name>
          
        </contrib>
        <aff id="aff1"><institution>Department of Mechanical Engineering, University of Colorado, Boulder,
CO 80309, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Jonathan J. Guerrette (jonathan.guerrette@colorado.edu)</corresp></author-notes><pub-date><day>22</day><month>June</month><year>2017</year></pub-date>
      
      <volume>17</volume>
      <issue>12</issue>
      <fpage>7605</fpage><lpage>7633</lpage>
      <history>
        <date date-type="received"><day>1</day><month>July</month><year>2016</year></date>
           <date date-type="rev-request"><day>17</day><month>October</month><year>2016</year></date>
           <date date-type="rev-recd"><day>24</day><month>March</month><year>2017</year></date>
           <date date-type="accepted"><day>22</day><month>April</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri>
<self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>


      <abstract>
    <p>Biomass burning emissions of atmospheric aerosols, including black carbon,
are growing due to increased global drought, and comprise a large source of
uncertainty in regional climate and air quality studies. We develop and apply
new incremental four-dimensional variational (4D-Var) capabilities in
WRFDA-Chem to find optimal spatially and temporally distributed biomass
burning (BB) and anthropogenic black carbon (BC) aerosol emissions. The
constraints are provided by aircraft BC concentrations from the Arctic
Research of the Composition of the Troposphere from Aircraft and Satellites
in collaboration with the California Air Resources Board (ARCTAS-CARB) field
campaign and surface BC concentrations from the Interagency Monitoring of
PROtected Visual Environment (IMPROVE) network on 22, 23, and 24 June 2008.
We consider three BB inventories, including Fire INventory from NCAR (FINN)
v1.0 and v1.5 and Quick Fire Emissions Database (QFED) v2.4r8. On 22 June,
aircraft observations are able to reduce the spread between a customized QFED
inventory and FINNv1.0 from a factor of <inline-formula><mml:math id="M1" display="inline"><mml:mn mathvariant="normal">3.5</mml:mn></mml:math></inline-formula> (<inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn></mml:mrow></mml:math></inline-formula>) to only
<inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">2.1</mml:mn></mml:mrow></mml:math></inline-formula>. On 23 and 24 June, the spread is reduced from <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">3.4</mml:mn></mml:mrow></mml:math></inline-formula> to
<inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1.4</mml:mn></mml:mrow></mml:math></inline-formula>. The posterior corrections to emissions are heterogeneous in time
and space, and exhibit similar spatial patterns of sign for both inventories.
The posterior diurnal BB patterns indicate that multiple daily emission peaks
might be warranted in specific regions of California. The US EPA's 2005
National Emissions Inventory (NEI05) is used as the anthropogenic prior. On
23 and 24 June, the coastal California posterior is reduced by <inline-formula><mml:math id="M6" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2,
where highway sources dominate, while inland sources are increased near
Barstow by <inline-formula><mml:math id="M7" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>5. Relative BB emission variances are reduced from the
prior by up to 35 % in grid cells close to aircraft flight paths and by
up to 60 % for fires near surface measurements. Anthropogenic variance
reduction is as high as 40 % and is similarly limited to sources close to
observations. We find that the 22 June aircraft observations are able to
constrain approximately 14 degrees of freedom of signal (DOF), while surface
and aircraft observations together on 23/24 June constrain 23 DOF. Improving
hourly- to daily-scale concentration predictions of BC and other aerosols
during BB events will require more comprehensive and/or targeted measurements
and a more complete accounting of sources of error besides the emissions.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\allowdisplaybreaks}?>
<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Black carbon (BC) makes significant contributions to short-term climate
<xref ref-type="bibr" rid="bib1.bibx7" id="paren.1"/> and human health <xref ref-type="bibr" rid="bib1.bibx35" id="paren.2"/> as a
component of aerosolized fine particulate matter (PM<inline-formula><mml:math id="M8" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula>) in the
atmosphere. BC is emitted through incomplete combustion from natural and
anthropogenic burning of biomass and fossil fuels. Open biomass burning (BB),
which includes natural wildfires, deforestation, and agricultural waste and
prescribed burning, accounts for 40 % of total global BC emissions, while
anthropogenic energy related sources (e.g., on- and off-road diesel and
gasoline engines, industrial coal, residential cooking and heating) make up
the remaining 60 % <xref ref-type="bibr" rid="bib1.bibx7" id="paren.3"/>. Future climate conditions
that increase drought and fire prevalence
<xref ref-type="bibr" rid="bib1.bibx65" id="paren.4"><named-content content-type="pre">e.g.,</named-content></xref> and increasingly regulated
anthropogenic sources might lead to a reversal of these ratios in California
<xref ref-type="bibr" rid="bib1.bibx46" id="paren.5"/> and globally <xref ref-type="bibr" rid="bib1.bibx37" id="paren.6"/>. In
California, BB events have been shown to increase surface PM<inline-formula><mml:math id="M9" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula>
concentrations by a factor of 3 to 5 (<inline-formula><mml:math id="M10" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3 to <inline-formula><mml:math id="M11" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>5), compared to
non-fire periods <xref ref-type="bibr" rid="bib1.bibx78" id="paren.7"/>. The heterogeneity in BC emission
and loss patterns and difficulty in replicating transport contribute to
prediction uncertainty.</p>
      <p>Despite the recognized importance of biomass emissions, large discrepancies
remain in inventories in terms of biomass consumed and emitted chemical
species. <xref ref-type="bibr" rid="bib1.bibx20" id="text.8"/> considered two different inventories
during January and April 2006 over Southeast and East Asia, where the total
emitted organic carbon (OC) and BC throughout the month differed by
<inline-formula><mml:math id="M12" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>12. <xref ref-type="bibr" rid="bib1.bibx82" id="text.9"/> found similar variability between
seven inventories in Africa during February 2010.
<xref ref-type="bibr" rid="bib1.bibx82" id="text.10"/> concluded that diffusion and loss mechanisms
limit the corresponding responses of domain-wide aerosol burden, AOD, and
2 <inline-formula><mml:math id="M13" display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> temperature to <inline-formula><mml:math id="M14" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2–3. However, the inventory spread for
larger source magnitudes led to modeled column burden spreads of
<inline-formula><mml:math id="M15" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>16–30 at hourly to daily grid scales.</p>
      <p>The large range in inventories at fine scales results from the differing ways
in which they are built. In order to be globally applicable, fire locating
algorithms use remotely sensed hotspots from polar-orbiting satellites. Some
provide additional regional locational and diurnal information with
geostationary instruments. In all cases, daily emissions in a grid cell are
calculated as the product of activity (<inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:mi mathvariant="normal">kg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">burned</mml:mi></mml:mrow></mml:math></inline-formula>) and emission
factors for each species and vegetation class combination
(<inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mi mathvariant="normal">kg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">emitted</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>(</mml:mo><mml:mi mathvariant="normal">kg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">burned</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Bottom–up inventories combine rough
estimates of burned area with vegetation densities and percent biomass burned
associated with different land cover types (LCTs) to determine fire activity
<xref ref-type="bibr" rid="bib1.bibx76 bib1.bibx60 bib1.bibx71" id="paren.11"><named-content content-type="pre">e.g.,</named-content></xref>.
Top–down approaches use fire radiative power (FRP) measured by
polar-orbiting or geostationary satellites and the LCT-specific energy
content <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx83" id="paren.12"><named-content content-type="pre">e.g.,</named-content></xref>, which
circumvents using uncertain estimates of burned areas
<xref ref-type="bibr" rid="bib1.bibx8" id="paren.13"/>. A third approach combines the FRP with
top–down constraints of aerosol optical depth (AOD)
<xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx13" id="paren.14"><named-content content-type="pre">e.g.,</named-content></xref>. All three of
these approaches cross reference fire locations with biome lookup tables to
obtain the species-specific emission factors for each fire.</p>
      <p>Improving short-term, local BC concentration predictions requires
characterization of fine-scale spatial and diurnal patterns of BB emissions.
The weakness of using only polar-orbiting data (e.g., Moderate Resolution
Imaging Spectroradiometer (MODIS) instruments aboard Terra and Aqua) in
bottom–up fire inventories is that there are nominally four overpasses per
day, often with missed detections due to cloud and smoke cover or fire sizes
beyond the instrument detection limits. Thus, these observations provide
little information about the diurnal pattern of fire counts and FRP.
<xref ref-type="bibr" rid="bib1.bibx83" id="text.15"/> and <xref ref-type="bibr" rid="bib1.bibx1" id="text.16"/> devise methods
for deriving climatological diurnal FRP patterns using geostationary
observations. Both provide new information to modelers, but the former is not
generalizable to grid-scale diurnal variability and the latter precludes the
possibility that diurnal FRP <xref ref-type="bibr" rid="bib1.bibx83" id="paren.17"/> and emissions
<xref ref-type="bibr" rid="bib1.bibx63" id="paren.18"/> patterns may be bimodal for specific LCTs and
fire regimes, or due to local meteorology.</p>
      <p>In contrast to their BB counterparts, anthropogenic emissions of BC are
periodic across weekly and annual timescales. Their spatial distributions are
relatively well known in developed countries, and less so in developing
countries <xref ref-type="bibr" rid="bib1.bibx7" id="paren.19"/>. Global estimates of annual
anthropogenic BC emissions vary by <inline-formula><mml:math id="M18" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2 <xref ref-type="bibr" rid="bib1.bibx7" id="paren.20"/>;
national annual BC emissions in Asian countries and regions have
uncertainties from <inline-formula><mml:math id="M19" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2 to <inline-formula><mml:math id="M20" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>5 <xref ref-type="bibr" rid="bib1.bibx67" id="paren.21"/>. In
North America, including in California, uncertainties still persist in terms
of characterizing the magnitude of emissions in a particular year, seasonal
variability, and long-term trends in activity and control strategies
<xref ref-type="bibr" rid="bib1.bibx28 bib1.bibx48" id="paren.22"/>.
<xref ref-type="bibr" rid="bib1.bibx7" id="text.23"/> cite several inventories of annual US non-BB BC
sources, which are between 260 and 440 <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:mi mathvariant="normal">Gg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">yr</mml:mi><mml:mo>-</mml:mo></mml:msup><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>, yielding a maximum
to minimum ratio of 1.7. However, like many other inventories, the US EPA
National Emission Inventory <xref ref-type="bibr" rid="bib1.bibx59" id="paren.24"/> does not specify
uncertainty bounds either for the whole country or at state and county
levels.</p>
      <p>These challenges in characterization of both BB and anthropogenic emissions
of BC and co-emitted species have led to the proliferation of top–down
constraint methods of varying complexity and utility. Several studies have
used adjoint-free methods for anthropogenic emissions in Los Angeles,
California, using aircraft measurements during the 2010 California Research
at the Nexus of Air Quality and Climate Change (CalNex) campaign.
<xref ref-type="bibr" rid="bib1.bibx9" id="text.25"/> constrained CO, NO<inline-formula><mml:math id="M22" display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>, and CO<inline-formula><mml:math id="M23" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, and
<xref ref-type="bibr" rid="bib1.bibx12" id="text.26"/> constrained CH<inline-formula><mml:math id="M24" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>; both applied a Lagrangian
particle dispersion model (LPDM). <xref ref-type="bibr" rid="bib1.bibx52" id="text.27"/>
constrained CH<inline-formula><mml:math id="M25" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> using a mass balance approach and light alkane signatures
from multiple sectors. LPDM benefits from being able to resolve sources on as
fine of a grid resolution as is used in the underlying model. Both LPDM and
mass balance are limited to linear tracer problems where observations are
recorded under specific meteorological conditions.
<xref ref-type="bibr" rid="bib1.bibx73" id="text.28"/> used GEOS-Chem in an analytical inversion to
compare constraints from the CalNex aircraft measurements with those from
present and future satellite observations of CH<inline-formula><mml:math id="M26" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula> throughout California.
Although an analytical inversion does not require an adjoint, the approach is
limited, computationally, to constraining only a few sources, which imposes
aggregation error <xref ref-type="bibr" rid="bib1.bibx47" id="paren.29"/>. Adjoint-based four-dimensional
variational data assimilation (4D-Var) is able to account for nonlinear
behavior between the emission sources and observation receptors by
calculating exact gradients across physical processes. Such an approach does
not have the limitations imposed by mass balance, LPDM, or analytical
inversions, but does require development of an adjoint. The gradients are
usually calculated through an adjoint model, although recent work
<xref ref-type="bibr" rid="bib1.bibx63" id="paren.30"/> performs 4D-Var on a limited area fire without
an adjoint. That new approach, while easier to implement, is limited to
solving for only a few spatially distributed sources due to computational
limitations.</p>
      <p>In this study, we adapt the adjoint-based incremental 4D-Var used in the
WRFDA weather forecasting system
<xref ref-type="bibr" rid="bib1.bibx4 bib1.bibx32" id="paren.31"/> to solve tracer
surface flux estimation problems. The modifications to that system that are
required for this work are described in Sect. <xref ref-type="sec" rid="Ch1.S2"/> as well as in
<xref ref-type="bibr" rid="bib1.bibx29" id="text.32"/> (GH15). These include new linearized model
descriptions (GH15), memory and I/O trajectory management (GH15), a
log-normal emission control variable (Sect. <xref ref-type="sec" rid="Ch1.S2.SS3.SSS2"/>), calculation
of posterior variance (Sect. <xref ref-type="sec" rid="Ch1.S2.SS3.SSS4"/>), and improvements to the
Gauss–Newton optimization algorithm to handle nonlinearities
(Sect. <xref ref-type="sec" rid="Ch1.S2.SS3.SSS5"/>). As described in GH15, this approach of assimilating
chemical tracer observations in a regional numerical weather prediction and
chemistry model is unique in the context of previous 4D-Var flux constraints.</p>
      <p>We apply the resulting tool, WRFDA-Chem, to constrain anthropogenic and BB
sources of BC throughout California during the Arctic Research of the
Composition of the Troposphere from Aircraft and Satellites in collaboration
with the California Air Resources Board (ARCTAS-CARB) field campaign. In June
2008, ARCTAS-CARB characterized aerosols and trace gases throughout
California with DC-8 aircraft flights on 20 (Friday), 22 (Sunday),
24 (Tuesday), and 26 (Wednesday) June <xref ref-type="bibr" rid="bib1.bibx34" id="paren.33"/>.
<xref ref-type="bibr" rid="bib1.bibx62" id="text.34"/> used BC total mass measurements from a
single-particle soot photometer (SP2) and other simultaneous gas-phase
measurements to identify and characterize anthropogenic and BB plumes in
California. By using these observations and surface measurements from every
third day from the Interagency Monitoring of PROtected Visual Environment
(IMPROVE) network (<xref ref-type="bibr" rid="bib1.bibx44" id="altparen.35"/>), we provide top–down
estimates of BC surface fluxes using 4D-Var. The mixture of anthropogenic and
BB sources distributed across complex terrain and biomes is a difficult
system to characterize. Still, this scenario is typical of daily smoke
exposure forecasting during acute wildfire events, and is a relevant first
test case for the new 4D-Var system.</p>
      <p>The approach taken in this work is described in Sect. <xref ref-type="sec" rid="Ch1.S2"/>,
including the forward, adjoint, and tangent linear models, the prior
inventories and domain, and the adaptation of WRFDA. Section <xref ref-type="sec" rid="Ch1.S3"/>
describes the application of WRFDA-Chem to the BB and anthropogenic emission
inversion problem during ARCTAS-CARB. We conclude with a summary and
recommendations for future measurements and emission inversion research.</p>
</sec>
<sec id="Ch1.S2">
  <title>Method</title>
<sec id="Ch1.S2.SS1">
  <title>Nonlinear, adjoint, and tangent linear models</title>
      <p>Incremental 4D-Var requires forward nonlinear (NLM), adjoint (ADM), and
tangent linear (TLM) models. The NLM is nearly identical to WRF-Chem
<xref ref-type="bibr" rid="bib1.bibx27" id="paren.36"/>, with the addition of emissions scaling factors. The
GOCART option facilitates 19 species, including 4 gas and aerosol species for
sulfate chemistry, hydrophobic and hydrophilic BC and organic carbon, 5 size
bins for dust, 4 bins for sea salt, and 2 diagnostic species for PM<inline-formula><mml:math id="M27" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula>
and PM<inline-formula><mml:math id="M28" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:math></inline-formula>. While we use GOCART, the results presented are limited to BC.
The model configuration is the same as was used in
<xref ref-type="bibr" rid="bib1.bibx29" id="text.37"/>, and is summarized as follows: ACM2 PBL
mixing <xref ref-type="bibr" rid="bib1.bibx54 bib1.bibx55" id="paren.38"/>, the Pleim–Xiu land
surface model
<xref ref-type="bibr" rid="bib1.bibx79 bib1.bibx57 bib1.bibx56" id="paren.39"/> and
surface layer <xref ref-type="bibr" rid="bib1.bibx53" id="paren.40"/> mechanisms without soil moisture and
temperature nudging, Wesely dry deposition velocities
<xref ref-type="bibr" rid="bib1.bibx74" id="paren.41"/>, GSFC shortwave and Goddard longwave
radiation, and microphysics turned off. Microphysical and radiative responses
to online aerosols are not taken into account for GOCART aerosols in
WRF-Chem.</p>
      <p>We utilize the recently developed WRFPLUS-Chem
<xref ref-type="bibr" rid="bib1.bibx29" id="paren.42"/>, which contains ADM and TLM code extending
the original WRFPLUS software <xref ref-type="bibr" rid="bib1.bibx84" id="paren.43"/>. WRFPLUS-Chem
describes chemical tracers in the context of planetary boundary layer (PBL)
mixing, emissions, dry deposition, and GOCART aerosols. ADM and TLM gradients
have been verified against finite difference approximations. Second-order
checkpointing reduces the memory footprint to a feasible level for ADM and
TLM simulations over longer durations (<inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mo>∼</mml:mo></mml:mrow></mml:math></inline-formula> 6 h) and/or that use many
chemical tracers (<inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mo>∼</mml:mo></mml:mrow></mml:math></inline-formula> 10). <xref ref-type="bibr" rid="bib1.bibx29" id="text.44"/> applied
the ADM in calculating sensitivities relevant to the emission inversion
carried out here. Section <xref ref-type="sec" rid="Ch1.S3.SS5"/> includes a comparison of the
results of that study with the posterior emissions here.</p>
      <p>The model domain is similar to that used by
<xref ref-type="bibr" rid="bib1.bibx29" id="text.45"/>. The spatial extent encompasses California
and other southwestern US states. We conduct two emission inversions, the
first on 22 June with a focus on biomass burning sources, and the second on
23–24 June with a focus on anthropogenic sources. We generated chemical
initial conditions by running WRF-Chem from 15 June 2008, 00:00:00 up until
the beginning of each inversion period. We used the default WRF-Chem boundary
condition for a BC concentration of 0.02 <inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">kg</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, which was
found to be consistent with observations with an upwind flight on 22 June.
Meteorological initial and boundary conditions are interpolated from
3 <inline-formula><mml:math id="M32" display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula>, 32 <inline-formula><mml:math id="M33" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> North American Regional Reanalysis (NARR) fields.
The horizontal resolution is 18 <inline-formula><mml:math id="M34" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> throughout 80 <inline-formula><mml:math id="M35" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 80
columns, and there are 42 vertical levels between the surface and model top
at 100 <inline-formula><mml:math id="M36" display="inline"><mml:mi mathvariant="normal">hPa</mml:mi></mml:math></inline-formula>.</p>
      <p>Our horizontal grid spacing was chosen to balance the wall-time and memory
requirements of 4D-Var with model accuracy, and the ACM2 PBL option was
chosen to reduce ADM and TLM development efforts.
<?xmltex \hack{\mbox\bgroup}?><xref ref-type="bibr" rid="bib1.bibx2" id="text.46"/><?xmltex \hack{\egroup}?> recommend that the complex
terrain in California demands fine tuning of the WRF horizontal grid spacing,
PBL, LSM, and reanalysis initialization. Among other conclusions, those
authors found that at six surface sites near the land–ocean boundary, 4 and
12 <inline-formula><mml:math id="M37" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> simulations with similar settings had mean wind speed biases of
(0.15 to 1.5) <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and (<inline-formula><mml:math id="M39" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.38 to 1.9) <inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>,
respectively. Supporting that conclusion, <xref ref-type="bibr" rid="bib1.bibx66" id="text.47"/> used a
36 <inline-formula><mml:math id="M41" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> resolution chemical transport model (CTM), with offline
meteorology, and found significant negative mean fractional bias (MFB) in
modeled PM<inline-formula><mml:math id="M42" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2.5</mml:mn></mml:msub></mml:math></inline-formula> relative to surface observations of fires within narrow
northern California valleys in July 2008 (MFB <inline-formula><mml:math id="M43" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M44" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>34.95 %) and
during autumn 2007 Santa Ana winds (MFB <inline-formula><mml:math id="M45" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M46" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>110.22 %). During the
July 2008 episode, their CTM predictions had a smaller positive bias
(MFB <inline-formula><mml:math id="M47" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M48" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>21.88 %). Therefore, we would expect similar wind and
concentration biases at 18 <inline-formula><mml:math id="M49" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> resolution, which may or may not be
improved by online meteorology. Incremental 4D-Var provides an opportunity to
utilize a different model configuration (e.g., resolution) for the NLM
comparisons of model to observations than that used for the ADM and TLM
simulations. The adaptation of that capability from meteorological
<xref ref-type="bibr" rid="bib1.bibx85" id="paren.48"><named-content content-type="pre">i.e.,</named-content></xref> to chemical simulations and the
subsequent testing is reserved for future WRFDA-Chem developments.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Prior emission inventories</title>
      <p>The prior includes sources of BC from anthropogenic activity and natural
wildfires. Anthropogenic emissions are taken from the US EPA's 2005 National
Emissions Inventory (NEI05) for mobile and point sources, including for
example diesel on-road and power production from coal. The individual sectors
are lumped together for each grid cell. We represent BB emissions using three
different wildfire inventories, FINNv1.0 and v1.5, both at
1 km <inline-formula><mml:math id="M50" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 1 km resolution
<xref ref-type="bibr" rid="bib1.bibx76 bib1.bibx75" id="paren.49"/>, and QFEDv2.4r8 at
0.1<inline-formula><mml:math id="M51" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M52" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 0.1<inline-formula><mml:math id="M53" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> resolution <xref ref-type="bibr" rid="bib1.bibx13" id="paren.50"/>.
FINNv1.5 is readily available through NCAR
(<uri>http://bai.acom.ucar.edu/Data/fire/</uri>) to WRF-Chem users, while FINNv1.0
is no longer supported. However, we include FINNv1.0 in this study, because
it shows the equivalent value as a prior. FINN and QFED fall into the first
(bottom–up) and third (top–down constraint with AOD) categories of BB
inventories described in Sect. <xref ref-type="sec" rid="Ch1.S1"/>, respectively.</p>
      <p>Any inverse modeling study that depends on an initial guess should start in a
region of high probability. In a Bayesian inversion, the first guess should
be unbiased. Here we address several known errors in our prior inventories
that we either fix or are unable to fix. All changes are consistent with
either observations or the intended physical descriptions of the inventories.</p>
      <p>QFED scales global aerosol emissions from four biome types through multiple
linear regression between observed MODIS aerosol optical depth (AOD) and
modeled GEOS-5 AOD during the years 2004–2009. For temperate forests QFED
scales aerosols by <inline-formula><mml:math id="M54" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>4.5 throughout the world. That vegetation category
accounts for 80 % of the wildfire BC in California during 22–30 June
2008. The global scaling is problematic for the California fires, because the
GEOS-5 AOD is biased high in the western US during the summer fire seasons of
2006–2008 <xref ref-type="bibr" rid="bib1.bibx13" id="paren.51"><named-content content-type="pre">Fig. C14 of</named-content></xref>. In order to match the
regional climatological AOD scaling factors for the western US, we scale all
QFED BC sources by <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula>. This
scaling is already taken into account in the prior emissions shown in
Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>, and without it FINNv1.0 and QFED would differ by
<inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> during the ARCTAS-CARB campaign.</p>
      <p>The WRF preprocessor distributed with the FINN inventory is used to
distribute ASCII formatted lists of both FINN and QFED daily speciated fire
emissions to hourly netcdf files readable by WRF. The diurnal profile follows
the Western Regional Air Partnership profile – <xref ref-type="bibr" rid="bib1.bibx77" id="text.52"/> – and
is defined by a flux peak from 13:00 to 14:00 Local Time (LT), and flat
fluxes equal to 2.5 % of the peak value between 19:00 and
09:00 <inline-formula><mml:math id="M57" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula>. Through modeling experience, we found two bugs with how the
FINN preprocessor interprets the WRAP profile and have fixed them for this
case study. The total FINNv1.0 emissions across the model domain before and
after fixing these bugs are plotted in Fig. <xref ref-type="fig" rid="Ch1.F1"/> along with MODIS
active fire counts <xref ref-type="bibr" rid="bib1.bibx51" id="paren.53"/>. The first bug relates to how the time
zone of a particular fire is calculated from longitude. The preprocessor
converts a decimal longitude to integer time-zone bins; this allows a fire at
120.1<inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W to be an hour earlier in the diurnal profile than a fire at
119.9<inline-formula><mml:math id="M59" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W, even though they should be at nearly identical positions
in the WRAP profile. Such behavior might apply to anthropogenic emissions,
where cities near time-zone borders follow different daily cycles of
activity, but not to natural activity related to the 15<inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> per hour
cycle of the Sun.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p>MODIS fire hotspot detections, excluding those with confidence
less than or equal to 20 % and double detections within 1.2 <inline-formula><mml:math id="M61" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> of
each other (left axis) and domain-wide FINNv1.0 BB emissions during the
ARCTAS-CARB campaign, with and without fixes described in
Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/> (right axis).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f01.pdf"/>

        </fig>

      <p><?xmltex \hack{\newpage}?>The second bug, and the one most visible in Fig. <xref ref-type="fig" rid="Ch1.F1"/>, is in the
redistribution of UTC fire detections into LT emissions. MODIS Terra and Aqua
overpass times are distributed around noon and midnight LT globally, with
some adjustment as the image capture location moves farther from the Equator.
The fire hotspots are detected on UTC days, and their emissions are profiled
according to LT periods corresponding to the same UTC day as the detection.
In California, where the LT is UTC minus 8 h, the noon overpass corresponds
to 20:00 <inline-formula><mml:math id="M62" display="inline"><mml:mi mathvariant="normal">UTC</mml:mi></mml:math></inline-formula>, and 00:00 <inline-formula><mml:math id="M63" display="inline"><mml:mi mathvariant="normal">UTC</mml:mi></mml:math></inline-formula> corresponds to 16:00 <inline-formula><mml:math id="M64" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula>
on the previous day (Sun cycle). Therefore, when a fire is detected during
nearly peak heat and emission fluxes at noon, a large fraction of the flux is
apportioned to the previous afternoon. For locations east of the
International Date Line, the LT reallocation is in the opposite direction. In
either case, some portion of the profile is shifted by 24 h. This error is
apparent as a temporal discontinuity in the case of transient fires that vary
significantly in magnitude from one day to the next, especially after a
recent ignition. Since the domain used here is nearly confined to a single
time zone, we simply move the emissions forward 1 day for times between 16:00
and 23:00 <inline-formula><mml:math id="M65" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula> (00:00–07:00 <inline-formula><mml:math id="M66" display="inline"><mml:mi mathvariant="normal">UTC</mml:mi></mml:math></inline-formula>). A more robust fix will need
to be implemented in a future preprocessor.</p>
      <p>Another error in the prior BB emissions is less easily resolved.
Figure <xref ref-type="fig" rid="Ch1.F2"/> shows where the MODIS active fires are located relative
to the inventory fire locations. Since QFED fires are provided on a lat–lon
grid, the fire centers do not coincide with its grid centers. When the
inventory is distributed to the 18 <inline-formula><mml:math id="M67" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> model grid, some emissions are
shifted over by one column relative to the FINN locations. There are several
additional spurious emission locations in QFED, where no active fires were
detected on either 21 or 22 June. In a month long simulation, differences in
fire gridding between several inventories can be averaged out. In the
shorter-term inversions over California presented in Sect. <xref ref-type="sec" rid="Ch1.S3"/>,
the locational differences do affect the results.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>WRFDA-Chem inversion system</title>
<sec id="Ch1.S2.SS3.SSS1">
  <title>Incremental 4D-Var</title>
      <p>The aim of data assimilation (DA) is to optimally combine uncertain
observations with uncertain model predictions to provide an improved estimate
of the state of a system than either gives alone. Here we apply incremental
4D-Var as first introduced by <xref ref-type="bibr" rid="bib1.bibx11" id="text.54"/>, utilizing the
existing software architecture in WRFDA, and extended to accommodate positive
definite emissions with large associated uncertainties
(Sect. <xref ref-type="sec" rid="Ch1.S2.SS3.SSS2"/>). In Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>, we show (similar to
<xref ref-type="bibr" rid="bib1.bibx42 bib1.bibx22 bib1.bibx70" id="altparen.55"/>)
that incremental 4D-Var is equivalent to a Gauss–Newton (GN) optimization,
where a cost function,

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M68" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:munder><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:munder><mml:mspace width="1em" linebreak="nobreak"/><mml:mi>J</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msup><mml:mfenced close="]" open="["><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mfenced></mml:mfenced><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace width="1em" linebreak="nobreak"/></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mfenced close="]" open="["><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:mfenced close=")" open="("><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mfenced></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace width="1em" linebreak="nobreak"/><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msup><mml:mfenced open="(" close=")"><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E1"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace width="1em" linebreak="nobreak"/></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mfenced close=")" open="("><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              is linearized around a current guess of a control variable vector (CV),
<inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="double-struck">R</mml:mi><mml:mi>n</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, minimized, then relinearized, and so on.
<inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is the CV perturbation sought in the <inline-formula><mml:math id="M71" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>th linearization.
<inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the vector of prior CVs, <inline-formula><mml:math id="M73" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula> is the background
covariance matrix, and <inline-formula><mml:math id="M74" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula> is the model–observation error
covariance matrix. The nonlinear operator,

                  <disp-formula id="Ch1.E2" content-type="numbered"><mml:math id="M75" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi>G</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mfenced><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mtable class="matrix" columnalign="center" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi mathvariant="normal">⋮</mml:mi></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi mathvariant="normal">⋮</mml:mi></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mi>N</mml:mi></mml:msub><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mfenced></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            is composed of the model–observation operators, with each <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msub><mml:mi>H</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> mapping
<inline-formula><mml:math id="M77" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> to observation time <inline-formula><mml:math id="M78" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>. The measurements at each acquisition time,
<inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi></mml:msubsup><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="double-struck">R</mml:mi><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, are expressed independently for <inline-formula><mml:math id="M80" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> acquisition
times by

                  <disp-formula id="Ch1.E3" content-type="numbered"><mml:math id="M81" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>o</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mfenced close="]" open="["><mml:msubsup><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mi>o</mml:mi><mml:mo>⊤</mml:mo></mml:mrow></mml:msubsup><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:msubsup><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>N</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>⊤</mml:mo></mml:mrow></mml:msubsup></mml:mfenced><mml:mo>⊤</mml:mo></mml:msup><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="double-struck">R</mml:mi><mml:mi>m</mml:mi></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            where
<inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>N</mml:mi></mml:msubsup><mml:msub><mml:mi>m</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:math></inline-formula>. The <inline-formula><mml:math id="M83" display="inline"><mml:mi>o</mml:mi></mml:math></inline-formula> superscript denotes that <inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>o</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> are
observations. <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is the innovation between observations and
model values in the previous linearization:
              <disp-formula id="Ch1.E4" content-type="numbered"><mml:math id="M86" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mi>o</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:mi>G</mml:mi><mml:mfenced open="(" close=")"><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            The linearized cost function is derived under the assumption that

                  <disp-formula id="Ch1.E5" content-type="numbered"><mml:math id="M87" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi>G</mml:mi><mml:mfenced close=")" open="("><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mfenced><mml:mo>≈</mml:mo><mml:mi>G</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mfenced><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            where <inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:mi mathvariant="bold">G</mml:mi><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="double-struck">R</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>×</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is the Jacobian of <inline-formula><mml:math id="M89" display="inline"><mml:mi>G</mml:mi></mml:math></inline-formula>. The
superscript on <inline-formula><mml:math id="M90" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> denotes that it is linearized around the
state from the previous iteration, i.e.,

                  <disp-formula id="Ch1.E6" content-type="numbered"><mml:math id="M91" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mfenced open="(" close=")"><mml:mtable class="matrix" columnalign="center" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold">H</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mo fence="true">|</mml:mo><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi mathvariant="normal">⋮</mml:mi></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold">H</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mo fence="true">|</mml:mo><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi mathvariant="normal">⋮</mml:mi></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold">H</mml:mi><mml:mi>N</mml:mi></mml:msub><mml:msub><mml:mo fence="true">|</mml:mo><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p>In an emission inversion for a single chemical species, <inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:msub><mml:mi>n</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>O</mml:mi><mml:mfenced close=")" open="("><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">5</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mfenced></mml:mrow></mml:math></inline-formula>, depending on the domain size and temporal
aggregation of posterior emissions. Since the number of members in
<inline-formula><mml:math id="M93" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula> is equal to <inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:msup><mml:mi>n</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, finding its inverse is computationally
unfeasible. To circumvent that challenge,
<xref ref-type="bibr" rid="bib1.bibx5" id="text.56"/> implemented the control variable
transform (CVT) through a square root preconditioner
<xref ref-type="bibr" rid="bib1.bibx43" id="paren.57"/>, <inline-formula><mml:math id="M95" display="inline"><mml:mi mathvariant="bold">U</mml:mi></mml:math></inline-formula>, in WRFDA. The increment is
transformed as <inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mi mathvariant="bold">U</mml:mi><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, where
<inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:mi mathvariant="bold">B</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">UU</mml:mi><mml:mo>⊤</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and
<inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="double-struck">R</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>×</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> is the identity matrix. The
transformed minimization problem is

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M100" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:munder><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:munder><mml:mspace width="1em" linebreak="nobreak"/><mml:mi>J</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mfenced open="(" close=")"><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>⊤</mml:mo></mml:msup><mml:mfenced open="(" close=")"><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mspace width="1em" linebreak="nobreak"/><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mfenced open="(" close=")"><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E7"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mspace linebreak="nobreak" width="1em"/></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mfenced close=")" open="("><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              where the background departure, summed over all previous outer iterations, is
              <disp-formula id="Ch1.E8" content-type="numbered"><mml:math id="M101" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:munderover><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
            In addition to circumventing the calculation of <inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, the
preconditioner reduces the condition number of the problem, speeding up the
minimization process.</p>
      <p>The solution to Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>) is found by setting its gradient equal to
zero, i.e.,

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M103" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="normal">∇</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mi>J</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace width="1em" linebreak="nobreak"/></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mfenced close=")" open="("><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E9"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace linebreak="nobreak" width="1em"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mn mathvariant="bold">0</mml:mn><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              This
yields the solution to the <inline-formula><mml:math id="M104" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>th linearization:

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M105" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mfenced close=")" open="("><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mfenced close=")" open="("><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E10"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace linebreak="nobreak" width="1em"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>-</mml:mo><mml:msup><mml:mfenced close="]" open="["><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">∇</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mi>J</mml:mi><mml:msub><mml:mo fence="true">|</mml:mo><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="bold">0</mml:mn></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              where <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msubsup><mml:mi mathvariant="normal">∇</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mi>J</mml:mi></mml:mrow></mml:math></inline-formula> is the Hessian
of Eq. (<xref ref-type="disp-formula" rid="Ch1.E7"/>). In addition to their large size, <inline-formula><mml:math id="M107" display="inline"><mml:mi mathvariant="bold">G</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mo>⊤</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> are not often known explicitly and can only be multiplied
by vectors through the integration of a TLM or ADM, respectively. As a
result, <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and its inverse are too large to store
and calculate explicitly. The inverse Hessian is generally approximated
through an iterative minimization (e.g., conjugate gradient), called the
inner loop, while the successive relinearizations are performed across outer
loop iterations. Finite precision and the problem dimension, <inline-formula><mml:math id="M110" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula>, prevent
Eq. (<xref ref-type="disp-formula" rid="Ch1.E9"/>) from being exactly equal to zero. Increasing the number
of inner loop iterations to approach such an objective does not necessarily
speed up convergence for the full nonlinear problem. Large innovations,
<inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, may remain after relinearization around the new state,
<inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>+</mml:mo><mml:mi mathvariant="bold">U</mml:mi><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>. The balance between
computational expense and accuracy is chosen for each application.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS2">
  <title>Log-normal control variables</title>
      <p>The positive definite nature of atmospheric chemical emissions combined with
uncertainties that are potentially greater than 100 % sets them apart
from most CVs sought in meteorological data assimilation. The cost function
in Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>) is derived assuming unbiased Gaussian statistics in
both the background errors and model–observation errors. Emissions are more
likely to be log-normally distributed, since individual sources are found
from the products of variables which themselves are also positive definite.
In order to ensure positive definiteness, the ratios of modeled (posterior,
<inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) to tabulated inventory (prior, <inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) emissions in all grid cells are
gathered into a vector, <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">β</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, such that

                  <disp-formula id="Ch1.E11" content-type="numbered"><mml:math id="M116" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            for CV member <inline-formula><mml:math id="M117" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula>. Each <inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is a “linear scaling factor”, while
“exponential scaling factors” comprise the posterior CV vector,
<inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. In this framework, <inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the background exponential
scaling factor. Setting <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="bold">0</mml:mn></mml:mrow></mml:math></inline-formula> is equivalent to assuming that
the inventory emissions are the prior. Equation (<xref ref-type="disp-formula" rid="Ch1.E11"/>) is
expressed within the <inline-formula><mml:math id="M122" display="inline"><mml:mi>G</mml:mi></mml:math></inline-formula> operator and its Jacobian. <inline-formula><mml:math id="M123" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> is resolved on
the grid scale and across hourly discretized emission rates; the temporal
resolution is customizable for particular applications.</p>
      <p>Although other emission scaling forms have proven effective
<xref ref-type="bibr" rid="bib1.bibx6 bib1.bibx36" id="paren.58"/>, we stick with
exponential scaling factors here both as a first demonstration and to be
consistent with log-normal statistics for emission rates.
<xref ref-type="bibr" rid="bib1.bibx17" id="text.59"/> showed that a cost function utilizing this
exponential transform – which was previously applied to emission inversions
by, e.g., <xref ref-type="bibr" rid="bib1.bibx50" id="text.60"/>, <xref ref-type="bibr" rid="bib1.bibx14" id="text.61"/>, and
<xref ref-type="bibr" rid="bib1.bibx31" id="text.62"/> – converges toward the median of a multivariate
log-normal distribution for <inline-formula><mml:math id="M124" display="inline"><mml:mi mathvariant="bold-italic">β</mml:mi></mml:math></inline-formula>. Our approach enables the use of
existing WRFDA optimization algorithms, with a simple modification described
in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3.SSS5"/>.</p>
      <p>Model–observation concentration errors might also be treated as being
log-normally distributed, since concentrations are positive definite. Still,
the positive definite constraint on emissions ensures that the same applies
to modeled concentrations, and we find that treatment to be effective.
Introducing log-normality in the observations would corrupt the quadratic
form of Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>), which is necessary to derive the closed form
solution of the additive increment in Eq. (<xref ref-type="disp-formula" rid="Ch1.E10"/>). Two alternatives
to our approach that include log-normal observations are proposed by
<xref ref-type="bibr" rid="bib1.bibx16" id="text.63"/>, who introduced a geometric incremental
formulation with a non-quadratic cost function, and <xref ref-type="bibr" rid="bib1.bibx64" id="text.64"/>,
who devised a quadratic approximation to the additive incremental log-normal
cost function.</p>
      <p>The scaling factor control variables necessitate a special treatment of prior
error variance. The common practitioner may have some intuition about
multiplicative emission uncertainties in <inline-formula><mml:math id="M125" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> space (e.g., “factor of 2,
3, 4, etc.”), but not of the variance in exponential CV (<inline-formula><mml:math id="M126" display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula>) space
that would populate the diagonal terms of <inline-formula><mml:math id="M127" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula>. A vector that follows
a multivariate log-normal distribution
(<inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">β</mml:mi><mml:mo>∼</mml:mo><mml:mi mathvariant="script">L</mml:mi><mml:mi mathvariant="script">N</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="bold-italic">μ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">B</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula>) is simply
the exponential of a different vector that follows a multivariate Gaussian
distribution (i.e.,
<inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>∼</mml:mo><mml:mi mathvariant="script">N</mml:mi><mml:mfenced open="(" close=")"><mml:mi mathvariant="bold-italic">μ</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="bold">B</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula>). According to,
e.g., <xref ref-type="bibr" rid="bib1.bibx30" id="text.65"/>, the sample mean and covariance of
<inline-formula><mml:math id="M130" display="inline"><mml:mi mathvariant="bold-italic">β</mml:mi></mml:math></inline-formula> across many realizations are

                  <disp-formula id="Ch1.E12" content-type="numbered"><mml:math id="M131" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="double-struck">E</mml:mi><mml:msub><mml:mfenced close="]" open="["><mml:msup><mml:mi mathvariant="bold-italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:mfenced><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">μ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=")"><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mfenced></mml:mrow></mml:math></disp-formula>

            and

                  <disp-formula id="Ch1.E13" content-type="numbered"><mml:math id="M132" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hbox\bgroup\fontsize{8.5}{8.5}\selectfont$\displaystyle}?><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced close="]" open="["><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mfenced></mml:mfenced><mml:mfenced open="(" close=")"><mml:mi>exp⁡</mml:mi><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:mo>,</mml:mo><?xmltex \hack{$\egroup}?></mml:mrow></mml:math></disp-formula>

            respectively, where <inline-formula><mml:math id="M133" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M134" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> are general indices coinciding with
individual CV members, <inline-formula><mml:math id="M135" display="inline"><mml:mi mathvariant="double-struck">E</mml:mi></mml:math></inline-formula> is the expectation operator and <inline-formula><mml:math id="M136" display="inline"><mml:mi>exp⁡</mml:mi></mml:math></inline-formula> is
the natural exponential function. The subscript <inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> indicates a
variable is evaluated in log-normal space in the zeroth outer iteration, when
<inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, and the subscript <inline-formula><mml:math id="M139" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> indicates an evaluation in Gaussian CV space. In
that Gaussian space, <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the mean, median, and mode. As
Eq. (<xref ref-type="disp-formula" rid="Ch1.E12"/>) shows, the expected value, or mean, of <inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>
is not equal to its median, <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mi>exp⁡</mml:mi><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, the latter being the central
tendency we find by minimizing Eq. (<xref ref-type="disp-formula" rid="Ch1.E7"/>).</p>
      <p>Equation (<xref ref-type="disp-formula" rid="Ch1.E13"/>) has not been used in previous emission
inversions to translate relative emission uncertainties into the exponential
space. When grid-scale relative emission uncertainties are less than
<inline-formula><mml:math id="M143" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3, there is not much error in assuming that

                  <disp-formula id="Ch1.Ex10"><mml:math id="M144" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>≈</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=")"><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mfenced></mml:mrow><mml:mrow><mml:mi>exp⁡</mml:mi><mml:mfenced close=")" open="("><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mfenced></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mi>exp⁡</mml:mi><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            which is equivalent to

                  <disp-formula id="Ch1.E14" content-type="numbered"><mml:math id="M145" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>≈</mml:mo><mml:mi>exp⁡</mml:mi><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></disp-formula>

            and its inverse

                  <disp-formula id="Ch1.E15" content-type="numbered"><mml:math id="M146" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>≈</mml:mo><mml:mi>log⁡</mml:mi><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

            <inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is the multiplicative uncertainty. For example,
<inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> gives a factor of 3 (<inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula>) relative emission
uncertainty. For our case, where <inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="bold">0</mml:mn></mml:mrow></mml:math></inline-formula>,
Eq. (<xref ref-type="disp-formula" rid="Ch1.E14"/>) diverges from Eq. (<xref ref-type="disp-formula" rid="Ch1.E13"/>) by less than
3 % in terms of an error in <inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for
<inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>∈</mml:mo><mml:mo>[</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mi>log⁡</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>)</mml:mo><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>, but reaches 100 % mismatch at
<inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi>log⁡</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">4.2</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The procedure we describe below should be followed
when grid-scale uncertainties are probably above <inline-formula><mml:math id="M154" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2, such as for
high-resolution inversions of BB sources. Simplifying Eq. (<xref ref-type="disp-formula" rid="Ch1.E13"/>)
for a diagonal term, the <inline-formula><mml:math id="M155" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>th prior variance of <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> is

                  <disp-formula id="Ch1.E16" content-type="numbered"><mml:math id="M157" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msup><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced open="[" close="]"><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mfenced><mml:mfenced close="]" open="["><mml:mi>exp⁡</mml:mi><mml:msup><mml:mfenced close=")" open="("><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

            This is identical to the variance transformation between univariate
log-normal and Gaussian distributions. However, we want the inverse of this
relationship,

                  <disp-formula id="Ch1.E17" content-type="numbered"><mml:math id="M158" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msqrt><mml:mrow><mml:mi>log⁡</mml:mi><mml:mfenced open="[" close="]"><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mfenced></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:msqrt><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

            With an initial guess of <inline-formula><mml:math id="M159" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>b</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, Eq. (<xref ref-type="disp-formula" rid="Ch1.E17"/>)
converges in recursion for reasonable ranges of <inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. This
transformation only needs to be applied during preprocessing, and only once
for each unique value of prior relative emission uncertainty.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS3">
  <title>Gaussian covariance</title>
      <p>The error covariance matrices in Eq. (<xref ref-type="disp-formula" rid="Ch1.E7"/>) are estimated using
existing knowledge of the underlying system. We assume that the off-diagonal
covariances in <inline-formula><mml:math id="M161" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula> are Gaussian in nature. These are defined through
the CVT in WRFDA-Chem, which only differs from that of WRFDA in order to
account for the temporal distribution of emissions. The transform
<inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mi mathvariant="bold">U</mml:mi><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is performed through two
separate operations as <inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:mi mathvariant="bold">U</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">U</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold">U</mml:mi><mml:mi>h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Although the
horizontal transform (<inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">U</mml:mi><mml:mi>h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) only deals with correlations in the <inline-formula><mml:math id="M165" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>
and <inline-formula><mml:math id="M166" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> directions, and the temporal transform (<inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">U</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) only does so
in the temporal dimension, they are both <inline-formula><mml:math id="M168" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>×</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:math></inline-formula>, with sub-matrices
along the diagonal of dimension <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:msub><mml:mi>n</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>×</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:msub><mml:mi>n</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M170" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>×</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, respectively. The computational overhead of multiplying by either
transform is reduced by only handling the non-zero elements. <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">U</mml:mi><mml:mi>h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
is carried out using recursive filters and the scalar correlation length
scale, <inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx5" id="paren.66"/>.</p>
      <p>The temporal transform, <inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">U</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, is constructed in a similar fashion
to the vertical transform in WRFDA for meteorological CVs
<xref ref-type="bibr" rid="bib1.bibx5" id="paren.67"/>, except that herein we use all of its
eigenmodes. The user specifies the duration of emission scaling factor bins
(in minutes), the temporal correlation timescale (<inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, in hours), and the
grid-scale relative emission uncertainty, <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. WRFDA-Chem converts
these selections to a covariance sub-matrix
<inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="bold">Σ</mml:mi><mml:mi mathvariant="bold">C</mml:mi><mml:mi mathvariant="bold">Σ</mml:mi><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="double-struck">R</mml:mi><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M177" display="inline"><mml:mi mathvariant="bold">C</mml:mi></mml:math></inline-formula> is the temporal correlation matrix and
<inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mi mathvariant="bold">Σ</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is square,
symmetric, and positive-definite. Similar to <xref ref-type="bibr" rid="bib1.bibx63" id="text.68"/>,
<inline-formula><mml:math id="M180" display="inline"><mml:mi mathvariant="bold">C</mml:mi></mml:math></inline-formula> is defined using an exponential decay,
              <disp-formula id="Ch1.E18" content-type="numbered"><mml:math id="M181" display="block"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mstyle scriptlevel="+1"><mml:mfrac><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
            where <inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula> is the time elapsed between the beginning of two particular
emission steps. The covariance is decomposed into eigenmodes as
<inline-formula><mml:math id="M183" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">E</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold">Λ</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:msubsup><mml:mi mathvariant="bold">E</mml:mi><mml:mi>t</mml:mi><mml:mo>⊤</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>; these are
readily calculated, because the dimension of <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the square of
the number of emission time steps (e.g., 24 steps for hourly scaling factors
in a single-day inversion). Throughout the optimization, the temporal
transform is carried out through multiplication by

                  <disp-formula id="Ch1.E19" content-type="numbered"><mml:math id="M185" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="bold">U</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mfenced open="[" close="]"><mml:mtable class="matrix" columnalign="center center center" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold">E</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:msubsup><mml:mi mathvariant="bold">Λ</mml:mi><mml:mi>t</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:mtd><mml:mtd><mml:mi mathvariant="normal">…</mml:mi></mml:mtd><mml:mtd><mml:mn mathvariant="bold">0</mml:mn></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mi mathvariant="normal">⋮</mml:mi></mml:mtd><mml:mtd><mml:mi mathvariant="normal">⋱</mml:mi></mml:mtd><mml:mtd><mml:mi mathvariant="normal">⋮</mml:mi></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mn mathvariant="bold">0</mml:mn></mml:mtd><mml:mtd><mml:mi mathvariant="normal">…</mml:mi></mml:mtd><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold">E</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:msubsup><mml:mi mathvariant="bold">Λ</mml:mi><mml:mi>t</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msubsup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced></mml:mrow></mml:math></disp-formula>

            and its transpose.</p>
      <p>The model–observation errors are also assumed to be Gaussian, and their
covariance matrix, <inline-formula><mml:math id="M186" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula>, is assumed diagonal. For each measurement,
<inline-formula><mml:math id="M187" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>, the total variance is defined as the sum of observation
<inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>o</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mfenced></mml:mrow></mml:math></inline-formula> and model <inline-formula><mml:math id="M189" display="inline"><mml:mrow><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>m</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mfenced></mml:mrow></mml:math></inline-formula>
components, following the approach by <xref ref-type="bibr" rid="bib1.bibx29" id="text.69"/>.
<inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>m</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is determined from an ensemble of 156 WRF-Chem model
configurations. Each member uses a unique combination of options for PBL
mixing, surface layer, LSM, and longwave and shortwave radiation,
and includes or excludes microphysics and subgrid cumulus convection.
<inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>o</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> accounts for instrument precision, representativeness error,
and averaging of measurements to the model resolution. We do not use the
weighting term previously defined by <xref ref-type="bibr" rid="bib1.bibx29" id="text.70"/>,
because small residuals with low uncertainty do not appear to hinder the
inversion process. Refer to that work for more particular details of how
<inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>m</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>o</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> are calculated.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS4">
  <title>Posterior error</title>
      <p>Posterior uncertainty is a useful measure to diagnose the value of an
emission inversion. While areas where uncertainty has been reduced from the
prior include new information from the observations, areas without
uncertainty reduction are simply a new realization of the prior. In a region
of linear behavior of a nonlinear DA cost function, and when <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mrow></mml:math></inline-formula>
is normally distributed, the posterior covariance, <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, is
equal to the inverse Hessian of Eq. (<xref ref-type="disp-formula" rid="Ch1.E1"/>)
<xref ref-type="bibr" rid="bib1.bibx69 bib1.bibx15" id="paren.71"><named-content content-type="pre">e.g.,</named-content></xref>:

                  <disp-formula id="Ch1.E20" content-type="numbered"><mml:math id="M196" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mo>=</mml:mo></mml:mrow><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mfenced open="[" close="]"><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            where

                  <disp-formula id="Ch1.E21" content-type="numbered"><mml:math id="M197" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

            Combining this with the expression for the Hessian of Eq. (<xref ref-type="disp-formula" rid="Ch1.E7"/>) we
used in Eq. (<xref ref-type="disp-formula" rid="Ch1.E10"/>) gives a conversion from the transformed
variable space

                  <disp-formula id="Ch1.E22" content-type="numbered"><mml:math id="M198" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mrow></mml:msub><mml:mi mathvariant="bold">U</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

            Using a Lanczos recurrence to solve the inner loop optimization problem in
Eq. (<xref ref-type="disp-formula" rid="Ch1.E7"/>) has the benefit of producing the means to approximate
<inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msup><mml:mfenced open="[" close="]"><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, which we demonstrate in
Appendix <xref ref-type="sec" rid="App1.Ch1.S2"/>. The final result of that derivation is the posterior
error,

                  <disp-formula specific-use="align" content-type="numbered"><mml:math id="M200" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">U</mml:mi><mml:msup><mml:mfenced open="[" close="]"><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E23"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace linebreak="nobreak" width="1em"/><mml:mo>≈</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="bold">B</mml:mi><mml:mo>+</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>l</mml:mi></mml:munderover><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:mfenced open="(" close=")"><mml:mi mathvariant="bold">U</mml:mi><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mfenced><mml:msup><mml:mfenced close=")" open="("><mml:mi mathvariant="bold">U</mml:mi><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mfenced><mml:mo>⊤</mml:mo></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              in terms of the eigenvectors of <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M202" display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">Q</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">w</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:mi>l</mml:mi><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. Each inner
iteration, <inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, leading up to the current iteration <inline-formula><mml:math id="M204" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula> of the Lanczos
optimization, produces (1) a new Lanczos vector in the orthonormal matrix
<inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">Q</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mo>.</mml:mo><mml:mo>.</mml:mo><mml:mo>,</mml:mo><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mi>l</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> and (2) a new row and
column in a tridiagonal matrix <inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">T</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, whose <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>th eigenpair is
<inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>;</mml:mo><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">w</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:mi>l</mml:mi><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mfenced></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is
a low-rank update to <inline-formula><mml:math id="M210" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula>, because <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mi>l</mml:mi><mml:mo>≪</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:math></inline-formula> due to the wall-clock
requirements of running the TLM and ADM once per iteration.
Equation (<xref ref-type="disp-formula" rid="Ch1.E23"/>) is consistent with earlier publications
<xref ref-type="bibr" rid="bib1.bibx15 bib1.bibx49" id="paren.72"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Land category types, MODIS fire hotspot detections on 21 and 22 June
2008, sized by FRP, and 18 <inline-formula><mml:math id="M212" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M213" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 18 <inline-formula><mml:math id="M214" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> gridded
FINNv1.0 and QFED emission locations.</p></caption>
            <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f02.pdf"/>

          </fig>

</sec>
<sec id="Ch1.S2.SS3.SSS5">
  <title>Nonlinear optimization</title>
      <p>For each outer loop iteration, <inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> must be small enough to keep
the error associated with the TL assumption, Eq. (<xref ref-type="disp-formula" rid="Ch1.E5"/>), below
some threshold. Otherwise the cost function may actually increase between
successive <inline-formula><mml:math id="M216" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>'s. However, the nonlinearity of the log-normal prior emission
errors contributes to failures in that respect. Violation of the TL
assumption and potential solutions are discussed in several DA works. The
prevailing strategy in chemical 4D-Var is to apply a quasi-Newton
optimization <xref ref-type="bibr" rid="bib1.bibx31 bib1.bibx6" id="paren.73"><named-content content-type="pre">e.g.,</named-content></xref>,
eliminating the inner-outer loop structure of GN. Implementing this approach
in WRFDA with posterior error estimation would be a considerable additional
effort. Also, as we mentioned in Sect. <xref ref-type="sec" rid="Ch1.S2.SS1"/>, using the tangent
linear model in the inner loop presents computational advantages for dual
resolution 4D-Var.</p>
      <p>There are several alternative approaches, which stem from the equivalence
between incremental 4D-Var and GN. <xref ref-type="bibr" rid="bib1.bibx23" id="text.74"/>
discuss application of GN in a trust region framework, which has the
limitation that a portion of the computationally expensive outer loop
increments will be rejected. Some authors have successfully applied the
Levenberg–Marquardt algorithm in EnKF
<xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx45" id="paren.75"><named-content content-type="pre">e.g.,</named-content></xref> by adding a
regularization term to the cost function. That method requires one to perform
the inner loop approximation of
<inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:msup><mml:mfenced close="]" open="["><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> multiple times, once for each
value of a scalar regularization parameter. A similar and cheaper approach is
damped GN (DGN), which changes the inner loop increment in
Eq. (<xref ref-type="disp-formula" rid="Ch1.E10"/>) to

                  <disp-formula id="Ch1.E24" content-type="numbered"><mml:math id="M218" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo></mml:mrow><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="italic">η</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:msup><mml:mfenced close="]" open="["><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mi mathvariant="normal">∇</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mi>J</mml:mi><mml:msub><mml:mo fence="true">|</mml:mo><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="bold">0</mml:mn></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            and uses a line search to find an optimal scalar <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">η</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>∈</mml:mo><mml:mfenced close="]" open="("><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced></mml:mrow></mml:math></inline-formula>
after the completion of each outer loop iteration
<xref ref-type="bibr" rid="bib1.bibx39" id="paren.76"/>. DGN is based on the Armijo rule, which states
that the increment found by GN points toward a direction of lower <inline-formula><mml:math id="M220" display="inline"><mml:mi>J</mml:mi></mml:math></inline-formula>; if the
step size terminus is outside the linear behavior of the model, decrease the
step size. This strategy is implemented in WRFDA-Chem for log-normally
distributed emission errors.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>ARCTAS-CARB case study</title>
<sec id="Ch1.S3.SS1">
  <title>Inversion setup</title>
      <p>From late May until 20 June 2008, the southwestern US experienced a very dry
period with little to no cloud cover appearing in MODIS true color imagery,
and no recorded rainfall for most of California. On 21 June, the Aqua and
Terra satellites recorded cloud cover for much of northern California, south
of San Francisco, and along the Sierra Nevada mountain range, and there were
widespread lightning strikes overnight. As is shown in Fig. <xref ref-type="fig" rid="Ch1.F1"/>, there
was a spike in fire detections during the night between 21 and 22 June. Thus,
from the morning through evening of 22 June, California experienced a
transient fire initiation event. The wildfires burned well into July,
exacerbating poor air quality throughout the state. The 20 June flight of
ARCTAS-CARB characterized northern California anthropogenic sources, but was
not influenced by fires. The 22 June flight embarked from Los Angeles,
transited the offshore Pacific inflow, flew directly through smoke from
forest fires in northern California, and then returned down the coastline.
That flight encountered anthropogenic sources of BC in the morning, and BB
sources for the remainder after returning to land. The 24 June flight passed
back and forth in the downwind region between Los Angeles and San Diego,
measuring the outflow from those cities and the transportation between them,
and 1-day old diluted BB outflow from the north. A fourth flight on 26 June
flew in the free troposphere from Los Angeles, north over the fires, and
exited the model domain to the east.</p>
      <p>We use WRFDA-Chem 4D-Var to constrain BB and anthropogenic aerosols on 3 days
during ARCTAS-CARB using aircraft and IMPROVE surface observations. We
utilize aircraft measurements of absorbing carbonaceous aerosol at
10 <inline-formula><mml:math id="M221" display="inline"><mml:mi mathvariant="normal">s</mml:mi></mml:math></inline-formula> intervals from the single-particle soot photometer (SP2) on 22,
24, and 26 June <xref ref-type="bibr" rid="bib1.bibx62" id="paren.77"/>. For this study, we assume
equivalency between the SP2 measurement and modeled BC, and re-average to the
90 <inline-formula><mml:math id="M222" display="inline"><mml:mi mathvariant="normal">s</mml:mi></mml:math></inline-formula> model time step using the revision 3 product, a process
described in <xref ref-type="bibr" rid="bib1.bibx29" id="text.78"/>. We also use 24 h average
surface observations of light absorbing carbon (LAC) on 23 and 26 June
<xref ref-type="bibr" rid="bib1.bibx44" id="paren.79"/>, assuming an equivalence with modeled BC, and
ignoring the 7 % high bias relative to the SP2 found by
<xref ref-type="bibr" rid="bib1.bibx81" id="text.80"/>. All treatments of observations are identical to
those described in <xref ref-type="bibr" rid="bib1.bibx29" id="text.81"/>, including an analysis
of model–observation BC mismatch that feeds into the inverse modeling study.</p>
      <p>Using measurements from 22, 23, and 24 June, the 4D-Var system constrains
anthropogenic and BB sources simultaneously. Data collected between 07:00:00
and 16:00:00 <inline-formula><mml:math id="M223" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula> on 22 June are used in an inversion from 22 June,
00:00:00 <inline-formula><mml:math id="M224" display="inline"><mml:mi mathvariant="normal">UTC</mml:mi></mml:math></inline-formula> to 23 June, 00:00:00 <inline-formula><mml:math id="M225" display="inline"><mml:mi mathvariant="normal">UTC</mml:mi></mml:math></inline-formula>, during which time
WRF-Chem is run freely, without nudging. The emission scaling factors for
this 24 h time period for both source types are applied to subsequent days
from 23 to 26 June in a cross-validation experiment. The 24 and 26 June
aircraft and 23 and 26 June surface observations are used to analyze the
utility of observationally constrained scaling factors found on 1 day to fix
source errors on subsequent days. The 23 and 24 June surface and aircraft
data are used in a 48 h inversion from 23 June, 00:00:00 <inline-formula><mml:math id="M226" display="inline"><mml:mi mathvariant="normal">UTC</mml:mi></mml:math></inline-formula> to
25 June, 00:00:00 <inline-formula><mml:math id="M227" display="inline"><mml:mi mathvariant="normal">UTC</mml:mi></mml:math></inline-formula>, also without nudging. Cross-validation is
performed for these source estimates using 26 June surface and aircraft data.</p>
      <p>Through preliminary testing, we found that horizontal correlation length
scales on the order of the grid spacing provide the lowest posterior cost
function. For both time periods, this length scale is set to twice the grid
scale, <inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>h</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">36</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M229" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>. The emission scaling factors are aggregated in
each hour, which coincides with the emission file reading interval for both
source types. The correlation scale is set to <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M231" display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula>, following
<xref ref-type="bibr" rid="bib1.bibx63" id="text.82"/>. In addition to spreading error information
across adjacent grid cells, the correlation scales reduce the effective
number of CVs. Through sensitivity tests where we considered the smoothness
of the posterior and the stationary posterior cost function value, and after
consulting published values for regional emission uncertainties (see
Sect. <xref ref-type="sec" rid="Ch1.S1"/>) in different global settings, we use a relative
grid-scale BB uncertainty of <inline-formula><mml:math id="M232" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3.8. The BB uncertainty might also be
approximated from the ratio of prior domain-wide total emissions between
FINNv1.0 and QFED, which is given in Table <xref ref-type="table" rid="Ch1.T5"/> as <inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">3.5</mml:mn></mml:mrow></mml:math></inline-formula>. If
the median emission strength lies in the middle of QFED and FINNv1.0, then
the prior domain-wide relative uncertainty is <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:msqrt><mml:mn mathvariant="normal">3.5</mml:mn></mml:msqrt><mml:mo>=</mml:mo><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1.8</mml:mn></mml:mrow></mml:math></inline-formula>.
The uncertainty would then need to be inflated further to account for spatial
and temporal disaggregation and the possibility that grid-scale sources from
the two inventories do not bound the true value (see
Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>). The prior anthropogenic grid-scale relative
uncertainty is set to <inline-formula><mml:math id="M235" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2, which is within the reasonable bounds
discussed in Sect. <xref ref-type="sec" rid="Ch1.S1"/>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p>Emission inversion scenarios.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.91}[.91]?><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">Scenario</oasis:entry>

         <oasis:entry colname="col3">BB inventory</oasis:entry>

         <oasis:entry colname="col4"><inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>h</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">Obs. used (day)</oasis:entry>

       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
       <?xmltex \rotentry?>
         <oasis:entry rowsep="1" colname="col1" morerows="4">22 Jun</oasis:entry>

         <oasis:entry colname="col2">FINN_STD</oasis:entry>

         <oasis:entry colname="col3">FINNv1.0</oasis:entry>

         <oasis:entry colname="col4">36 <inline-formula><mml:math id="M237" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">ARCTAS-CARB (22)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">FINN_L18</oasis:entry>

         <oasis:entry colname="col3">FINNv1.0</oasis:entry>

         <oasis:entry colname="col4">18 <inline-formula><mml:math id="M238" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">ARCTAS-CARB (22)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">QFED_STD</oasis:entry>

         <oasis:entry colname="col3">QFEDv2.4r8</oasis:entry>

         <oasis:entry colname="col4">36 <inline-formula><mml:math id="M239" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">ARCTAS-CARB (22)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">QFED_L18</oasis:entry>

         <oasis:entry colname="col3">QFEDv2.4r8</oasis:entry>

         <oasis:entry colname="col4">18 <inline-formula><mml:math id="M240" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">ARCTAS-CARB (22)</oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col2">FINN_V1.5</oasis:entry>

         <oasis:entry colname="col3">FINNv1.5</oasis:entry>

         <oasis:entry colname="col4">36 <inline-formula><mml:math id="M241" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">ARCTAS-CARB (22)</oasis:entry>

       </oasis:row>
       <oasis:row>
       <?xmltex \rotentry?>
         <oasis:entry colname="col1" morerows="5">23/24 Jun</oasis:entry>

         <oasis:entry colname="col2">FINN_STD</oasis:entry>

         <oasis:entry colname="col3">FINNv1.0</oasis:entry>

         <oasis:entry colname="col4">36 <inline-formula><mml:math id="M242" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">IMPROVE (23)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2"/>

         <oasis:entry colname="col3"/>

         <oasis:entry colname="col4"/>

         <oasis:entry colname="col5">ARCTAS-CARB (24)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">QFED_STD</oasis:entry>

         <oasis:entry colname="col3">QFEDv2.4r8</oasis:entry>

         <oasis:entry colname="col4">36 <inline-formula><mml:math id="M243" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">IMPROVE (23)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2"/>

         <oasis:entry colname="col3"/>

         <oasis:entry colname="col4"/>

         <oasis:entry colname="col5">ARCTAS-CARB (24)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">ACFT</oasis:entry>

         <oasis:entry colname="col3">FINNv1.0</oasis:entry>

         <oasis:entry colname="col4">36 <inline-formula><mml:math id="M244" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">ARCTAS-CARB (24)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">SURF</oasis:entry>

         <oasis:entry colname="col3">FINNv1.0</oasis:entry>

         <oasis:entry colname="col4">36 <inline-formula><mml:math id="M245" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5">IMPROVE (23)</oasis:entry>

       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

      <p>In addition to these standard settings, several sensitivity scenarios are
used to gauge the sensitivity of the posteriors during two time periods to
alternative inversion settings. The full set of scenarios are summarized in
Table <xref ref-type="table" rid="Ch1.T1"/>, and are as follows. FINNv1.0 is used as the default
BB inventory in a scenario called FINN_STD for both inversion periods.
QFED_STD uses the QFEDv2.4r8 BB inventory. Both FINN_L18 and QFED_L18 use
<inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>h</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M247" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>. FINN_V1.5 utilizes the FINNv1.5 BB inventory. For the
23/24 June inversion, we show results for both QFED_STD and FINN_STD, the
latter of which includes variations where either surface or aircraft
observations are excluded. The number of aircraft observations is
<inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">241</mml:mn></mml:mrow></mml:math></inline-formula> on 22 June and <inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">302</mml:mn></mml:mrow></mml:math></inline-formula> on 24 June. There
were <inline-formula><mml:math id="M250" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">35</mml:mn></mml:mrow></mml:math></inline-formula> active surface sites on 23 June, 13 of them within
California. We use six outer iterations consisting of 10 inner iterations
each. Given the number of inner iterations used, and the wall-time of the
tangent linear plus the adjoint (<inline-formula><mml:math id="M251" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>10 longer than the nonlinear model),
the cost of 4D-Var is approximately <inline-formula><mml:math id="M252" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>600 more than that of a single
forward simulation, which is much cheaper than using finite difference
methods to approximate derivatives instead of the linearized models when
<inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>∼</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Posterior model performance</title>
      <p>For a linear model operator and Gaussian distributed errors, the cost
function can be used to evaluate the consistency of the statistics in
<inline-formula><mml:math id="M254" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M255" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula>. The <inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">χ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> criteria states that the
posterior cost function should be equal to <inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">OBS</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx68" id="paren.83"><named-content content-type="pre">e.g.,</named-content></xref>. The convergence properties of the 22
and 23/24 June inversion scenarios are shown in the outer loop cost function
progression in Fig. <xref ref-type="fig" rid="Ch1.F3"/>. All of the 22 June scenarios led to
comparable cost function values at numerical convergence, as shown in
Fig. <xref ref-type="fig" rid="Ch1.F3"/>. The gradient norms are also reduced by nearly two orders
of magnitude in all cases. In all of the scenarios, <inline-formula><mml:math id="M258" display="inline"><mml:mi>J</mml:mi></mml:math></inline-formula> converges to
approximately <inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">OBS</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, indicating that a portion of the model errors
are not fully spanned by prior emission errors. For the 23/24 June inversion,
QFED_STD reaches a lower cost function value, and both scenarios achieve
similar <inline-formula><mml:math id="M260" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">χ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> values as the 22 June cases. Scrutinizing other sources of
error (e.g., initial and boundary conditions for BC and meteorological
variables, transport, BB plume rise, and model discretization) either
independent from source strengths or simultaneously in the inversion
framework should elicit further cost function reductions. Considering the top
subplot in Fig. <xref ref-type="fig" rid="Ch1.F4"/>, the non-emission sources of error on 22 June
are evident when the prior and posterior predictions are on top of each
other, and remain on the edges of the low probability uncertainty region. For
example, the observations before 08:00 <inline-formula><mml:math id="M261" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula> after takeoff from Edwards
are likely sensitive to the Pacific inflow, but not early morning emissions.
Since these locations have relatively small uncertainties, the posterior cost
function will never be reduced there.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Outer loop cost function and gradient norm evaluations for the 22
June (left column) and 23/24 June (right column) inversions.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f03.pdf"/>

        </fig>

      <p><?xmltex \hack{\newpage}?>Figure <xref ref-type="fig" rid="Ch1.F4"/> also shows that during the inversion period the
posterior is within the combined model–observation uncertainty (see
Sect. <xref ref-type="sec" rid="Ch1.S2.SS3.SSS3"/>) much more often than the prior. In the afternoon,
when the DC-8 passed over the wildfires, an increase in posterior emissions
captures several of the observed BC peaks. The posterior is able to match the
high-resolution variability of the observations at 13:30 <inline-formula><mml:math id="M262" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula>, which
may support the validity of the temporal averaging scheme. The only time
during the inversion when the forecast degrades is for an observed peak at
22 June, 08:00 <inline-formula><mml:math id="M263" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula>. The larger absolute observation uncertainty at
that time relative to that at 08:30 <inline-formula><mml:math id="M264" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula> enforces a weaker constraint
in the inversion. Coupled with the assumed relative emission error
correlation length scale and the close proximity of these two measurements,
that stronger constraint at 08:30 <inline-formula><mml:math id="M265" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula> dominates the morning
anthropogenic emission analysis increment.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Temporal variation of observed, prior, and posterior BC
concentrations during ARCTAS-CARB. The model values are obtained with the
FINN_STD inversion scenario. The shaded area encompasses 2 standard
deviations around the observations, which includes both model and observation
uncertainty.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f04.pdf"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Prior and posterior model versus 22 June ARCTAS-CARB observations
for the 22 June inversion. The left two plots are for FINN_STD and
QFED_STD. The plot on the right shows the progression of the slope and <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>
from the prior, “0”, to the posterior, “a”, for similar linear
regressions in all scenarios.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f05.png"/>

        </fig>

      <p>The <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> coefficients and slopes for linear fits between the prior and
posterior and both aircraft and surface observations are summarized in
Tables <xref ref-type="table" rid="Ch1.T2"/> and <xref ref-type="table" rid="Ch1.T3"/>. Those results include
cross-validation data on non-inversion days, which is discussed in
Sect. <xref ref-type="sec" rid="Ch1.S3.SS5"/>. For both inversion periods, there are considerable
model performance improvements for observations that are used in the
inversion. FINN_STD improves <inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> from 0.11 to 0.82 and slope from 0.26 to
0.8 on 22 June. QFED_STD improves <inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> from 0.03 to 0.73 and slope from
0.34 to 0.71. Similar improvements occur for 23 June surface observations
during the 23/24 June inversion. The posterior match to 24 June aircraft
observations is improved, but not nearly as much as the other two data sets.
The 22 June inversion results are also shown in Fig. <xref ref-type="fig" rid="Ch1.F5"/>, where
the progression of the fit parameters is shown for the multiple scenarios.
While all scenarios show similar improvements, the FINN_STD and QFED_STD
results indicate the posteriors are still underpredicting many low and high
concentrations. A similar phenomenon occurs for the 24 June observations in
Fig. <xref ref-type="fig" rid="Ch1.F6"/> in the inversion that uses both surface and aircraft
observations. On both 22 and 24 June, the remaining low bias is either due to
large prior observation and model error (diagonal of <inline-formula><mml:math id="M270" display="inline"><mml:mi mathvariant="bold">R</mml:mi></mml:math></inline-formula>) or due to
the prior errors not being sensitive to emission increments.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p>Aircraft observation linear regression characteristics for the prior
(background, b) and posterior (analysis, a).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="14">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right" colsep="1"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right" colsep="1"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right" colsep="1"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right" colsep="1"/>
     <oasis:colspec colnum="11" colname="col11" align="right"/>
     <oasis:colspec colnum="12" colname="col12" align="right" colsep="1"/>
     <oasis:colspec colnum="13" colname="col13" align="right"/>
     <oasis:colspec colnum="14" colname="col14" align="right"/>
     <oasis:thead>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">Obs. date <inline-formula><mml:math id="M271" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col3" nameend="col6" align="center" colsep="1">22 Jun, <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">241</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col7" nameend="col10" align="center" colsep="1">24 Jun, <inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">301</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col11" nameend="col14" align="center">26 Jun, <inline-formula><mml:math id="M274" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">117</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">Inversion scenario</oasis:entry>

         <oasis:entry rowsep="1" namest="col3" nameend="col4" align="center" colsep="1"><inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col5" nameend="col6" align="center" colsep="1">slope </oasis:entry>

         <oasis:entry rowsep="1" namest="col7" nameend="col8" align="center" colsep="1"><inline-formula><mml:math id="M276" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col9" nameend="col10" align="center" colsep="1">slope </oasis:entry>

         <oasis:entry rowsep="1" namest="col11" nameend="col12" align="center" colsep="1"><inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col13" nameend="col14" align="center">slope </oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2"><inline-formula><mml:math id="M278" display="inline"><mml:mo>↓</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col3">b</oasis:entry>

         <oasis:entry colname="col4">a</oasis:entry>

         <oasis:entry colname="col5">b</oasis:entry>

         <oasis:entry colname="col6">a</oasis:entry>

         <oasis:entry colname="col7">b</oasis:entry>

         <oasis:entry colname="col8">a</oasis:entry>

         <oasis:entry colname="col9">b</oasis:entry>

         <oasis:entry colname="col10">a</oasis:entry>

         <oasis:entry colname="col11">b</oasis:entry>

         <oasis:entry colname="col12">a</oasis:entry>

         <oasis:entry colname="col13">b</oasis:entry>

         <oasis:entry colname="col14">a</oasis:entry>

       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
       <?xmltex \rotentry?>
         <oasis:entry rowsep="1" colname="col1" morerows="1">22 Jun</oasis:entry>

         <oasis:entry colname="col2">FINN_STD</oasis:entry>

         <oasis:entry colname="col3">0.11</oasis:entry>

         <oasis:entry colname="col4"><bold>0.82</bold></oasis:entry>

         <oasis:entry colname="col5">0.26</oasis:entry>

         <oasis:entry colname="col6"><bold>0.80</bold></oasis:entry>

         <oasis:entry colname="col7">0.18</oasis:entry>

         <oasis:entry colname="col8">(0.15)</oasis:entry>

         <oasis:entry colname="col9">0.38</oasis:entry>

         <oasis:entry colname="col10">(<italic>0.25</italic>)</oasis:entry>

         <oasis:entry colname="col11">0.56</oasis:entry>

         <oasis:entry colname="col12">(0.52)</oasis:entry>

         <oasis:entry colname="col13">0.15</oasis:entry>

         <oasis:entry colname="col14">(<bold>0.49</bold>)</oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col2">QFED_STD</oasis:entry>

         <oasis:entry colname="col3">0.03</oasis:entry>

         <oasis:entry colname="col4"><bold>0.73</bold></oasis:entry>

         <oasis:entry colname="col5">0.34</oasis:entry>

         <oasis:entry colname="col6"><bold>0.71</bold></oasis:entry>

         <oasis:entry colname="col7">0.15</oasis:entry>

         <oasis:entry colname="col8">(0.23)</oasis:entry>

         <oasis:entry colname="col9">0.43</oasis:entry>

         <oasis:entry colname="col10">(0.37)</oasis:entry>

         <oasis:entry colname="col11">0.59</oasis:entry>

         <oasis:entry colname="col12">(0.53)</oasis:entry>

         <oasis:entry colname="col13">0.39</oasis:entry>

         <oasis:entry colname="col14">(0.43)</oasis:entry>

       </oasis:row>
       <oasis:row>
       <?xmltex \rotentry?>
         <oasis:entry colname="col1" morerows="3">23/24 Jun</oasis:entry>

         <oasis:entry colname="col2">FINN_STD</oasis:entry>

         <oasis:entry colname="col3">–</oasis:entry>

         <oasis:entry colname="col4">–</oasis:entry>

         <oasis:entry colname="col5">–</oasis:entry>

         <oasis:entry colname="col6">–</oasis:entry>

         <oasis:entry colname="col7">0.17</oasis:entry>

         <oasis:entry colname="col8"><bold>0.52</bold></oasis:entry>

         <oasis:entry colname="col9">0.35</oasis:entry>

         <oasis:entry colname="col10"><bold>0.56</bold></oasis:entry>

         <oasis:entry colname="col11">0.59</oasis:entry>

         <oasis:entry colname="col12">(<italic>0.16</italic>)</oasis:entry>

         <oasis:entry colname="col13">0.15</oasis:entry>

         <oasis:entry colname="col14">(0.11)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">QFED_STD</oasis:entry>

         <oasis:entry colname="col3">–</oasis:entry>

         <oasis:entry colname="col4">–</oasis:entry>

         <oasis:entry colname="col5">–</oasis:entry>

         <oasis:entry colname="col6">–</oasis:entry>

         <oasis:entry colname="col7">0.11</oasis:entry>

         <oasis:entry colname="col8"><bold>0.52</bold></oasis:entry>

         <oasis:entry colname="col9">0.36</oasis:entry>

         <oasis:entry colname="col10"><bold>0.55</bold></oasis:entry>

         <oasis:entry colname="col11">0.63</oasis:entry>

         <oasis:entry colname="col12">(<italic>0.44</italic>)</oasis:entry>

         <oasis:entry colname="col13">0.41</oasis:entry>

         <oasis:entry colname="col14">(<italic>0.15</italic>)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">ACFT</oasis:entry>

         <oasis:entry colname="col3">–</oasis:entry>

         <oasis:entry colname="col4">–</oasis:entry>

         <oasis:entry colname="col5">–</oasis:entry>

         <oasis:entry colname="col6">–</oasis:entry>

         <oasis:entry colname="col7">0.17</oasis:entry>

         <oasis:entry colname="col8"><bold>0.53</bold></oasis:entry>

         <oasis:entry colname="col9">0.35</oasis:entry>

         <oasis:entry colname="col10"><bold>0.57</bold></oasis:entry>

         <oasis:entry colname="col11">0.59</oasis:entry>

         <oasis:entry colname="col12">(<italic>0.29</italic>)</oasis:entry>

         <oasis:entry colname="col13">0.15</oasis:entry>

         <oasis:entry colname="col14">(0.08)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">SURF</oasis:entry>

         <oasis:entry colname="col3">–</oasis:entry>

         <oasis:entry colname="col4">–</oasis:entry>

         <oasis:entry colname="col5">–</oasis:entry>

         <oasis:entry colname="col6">–</oasis:entry>

         <oasis:entry colname="col7">0.17</oasis:entry>

         <oasis:entry colname="col8">(0.17)</oasis:entry>

         <oasis:entry colname="col9">0.35</oasis:entry>

         <oasis:entry colname="col10">(0.40)</oasis:entry>

         <oasis:entry colname="col11">0.59</oasis:entry>

         <oasis:entry colname="col12">(<italic>0.13</italic>)</oasis:entry>

         <oasis:entry colname="col13">0.15</oasis:entry>

         <oasis:entry colname="col14">(0.17)</oasis:entry>

       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p>Distinct improvement (bold). Distinct degradation (italic).
Cross-validation (parentheses).</p></table-wrap-foot></table-wrap>

      <p>For the appreciable measured BC concentrations (<inline-formula><mml:math id="M279" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M280" display="inline"><mml:mn mathvariant="normal">0.25</mml:mn></mml:math></inline-formula> <inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), which are likely caused by a source within the model domain and
simulation period, the lack of a source–receptor relationship is likely
caused by low resolution. Changing a point source to a grid-scale area source
changes its effective location. Temporal averaging of the observations will
not necessarily solve that problem since perfectly modeled transport could
still send a mislocated source in an entirely different direction than the
truthfully located source. This effect is evident for valley fires
<xref ref-type="bibr" rid="bib1.bibx66" id="paren.84"/>, since placing the sources in the basin or
spreading them throughout the basin and the peaks will result in different
“downwind” concentrations. Downwind might be a very different direction if
the convective-scale winds contribute more information than the mesoscale
winds to the true source–receptor relationship. Since the emissions are
smoothed in the model and not in reality, the mislocation is more likely to
cause underprediction than overprediction.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Posterior emissions</title>
      <p>Figure <xref ref-type="fig" rid="Ch1.F7"/> shows the prior and posterior BB emissions for
FINN_STD and QFED_STD during both simulation periods. In that figure there
are several outlined emission areas (EAs); each EA was chosen to identify
regions where a subset of the grid-scale analysis increment (<inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">EAX</mml:mi></mml:msub><mml:mo>⊂</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mrow></mml:math></inline-formula>) from both prior inventories
is of a similar sign. The coordinates of the EAs are listed in
Table <xref ref-type="table" rid="Ch1.T4"/>. The two inversions do not reach identical total
posterior BC emissions, but they do converge in certain aspects.
Table <xref ref-type="table" rid="Ch1.T5"/> gives the emission subtotals for the EAs. During both
inversions, each EA has emission increments of the same sign for both
scenarios. Therefore, while domain-wide sources seem to be bounded by the two
priors (as evidenced by their convergence), the same might not be true within
the individual EAs. EA3, which accounts for the smallest average posterior
total, is the only region where the magnitude of the log ratio between QFED
and FINN is smaller in the posterior on 22 June. The ratio is reduced in EA2,
but there the FINN posterior is <inline-formula><mml:math id="M283" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2 larger than that for QFED. On
23/24 June, the two scenarios have less posterior spread in all of the EAs.
Although Table <xref ref-type="table" rid="Ch1.T5"/> indicates large changes in source strengths
across the EAs, Fig. <xref ref-type="fig" rid="Ch1.F8"/> reveals that a majority of the absolute
emission increment (posterior minus prior) in both FINN_STD and QFED_STD
arose in only a few grid cells, often where the prior has the largest
magnitude. The linear scaling factor pattern is similar between the two
scenarios, with those for QFED_STD shifted toward decreases due to the high
prior bias.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p>Surface observation linear regression characteristics for the prior
(background, b) and posterior (analysis, a).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="10">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right" colsep="1"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right" colsep="1"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right" colsep="1"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:thead>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">Obs. date <inline-formula><mml:math id="M284" display="inline"><mml:mo>→</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col3" nameend="col6" align="center" colsep="1">23 Jun, <inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">35</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col7" nameend="col10" align="center">26 Jun, <inline-formula><mml:math id="M286" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">obs</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">36</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">Inversion scenario</oasis:entry>

         <oasis:entry rowsep="1" namest="col3" nameend="col4" align="center" colsep="1"><inline-formula><mml:math id="M287" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col5" nameend="col6" align="center" colsep="1">slope </oasis:entry>

         <oasis:entry rowsep="1" namest="col7" nameend="col8" align="center" colsep="1"><inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry rowsep="1" namest="col9" nameend="col10" align="center">slope </oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2"><inline-formula><mml:math id="M289" display="inline"><mml:mo>↓</mml:mo></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col3">b</oasis:entry>

         <oasis:entry colname="col4">a</oasis:entry>

         <oasis:entry colname="col5">b</oasis:entry>

         <oasis:entry colname="col6">a</oasis:entry>

         <oasis:entry colname="col7">b</oasis:entry>

         <oasis:entry colname="col8">a</oasis:entry>

         <oasis:entry colname="col9">b</oasis:entry>

         <oasis:entry colname="col10">a</oasis:entry>

       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
       <?xmltex \rotentry?>
         <oasis:entry rowsep="1" colname="col1" morerows="1">22 Jun</oasis:entry>

         <oasis:entry colname="col2">FINN_STD</oasis:entry>

         <oasis:entry colname="col3">0.06</oasis:entry>

         <oasis:entry colname="col4">(0.04)</oasis:entry>

         <oasis:entry colname="col5">0.26</oasis:entry>

         <oasis:entry colname="col6">(0.21)</oasis:entry>

         <oasis:entry colname="col7">0.03</oasis:entry>

         <oasis:entry colname="col8">(0.05)</oasis:entry>

         <oasis:entry colname="col9">0.10</oasis:entry>

         <oasis:entry colname="col10">(0.13)</oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col2">QFED_STD</oasis:entry>

         <oasis:entry colname="col3">0.16</oasis:entry>

         <oasis:entry colname="col4">(0.14)</oasis:entry>

         <oasis:entry colname="col5">0.44</oasis:entry>

         <oasis:entry colname="col6">(0.41)</oasis:entry>

         <oasis:entry colname="col7">0.10</oasis:entry>

         <oasis:entry colname="col8">(0.11)</oasis:entry>

         <oasis:entry colname="col9">0.20</oasis:entry>

         <oasis:entry colname="col10">(0.21)</oasis:entry>

       </oasis:row>
       <oasis:row>
       <?xmltex \rotentry?>
         <oasis:entry colname="col1" morerows="3">23/24 Jun</oasis:entry>

         <oasis:entry colname="col2">FINN_STD</oasis:entry>

         <oasis:entry colname="col3">0.04</oasis:entry>

         <oasis:entry colname="col4"><bold>0.75</bold></oasis:entry>

         <oasis:entry colname="col5">0.25</oasis:entry>

         <oasis:entry colname="col6"><bold>1.04</bold></oasis:entry>

         <oasis:entry colname="col7">0.03</oasis:entry>

         <oasis:entry colname="col8">(<bold>0.28</bold>)</oasis:entry>

         <oasis:entry colname="col9">0.10</oasis:entry>

         <oasis:entry colname="col10">(<bold>0.28</bold>)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">QFED_STD</oasis:entry>

         <oasis:entry colname="col3">0.09</oasis:entry>

         <oasis:entry colname="col4"><bold>0.74</bold></oasis:entry>

         <oasis:entry colname="col5">0.39</oasis:entry>

         <oasis:entry colname="col6"><bold>1.01</bold></oasis:entry>

         <oasis:entry colname="col7">0.09</oasis:entry>

         <oasis:entry colname="col8">(0.15)</oasis:entry>

         <oasis:entry colname="col9">0.20</oasis:entry>

         <oasis:entry colname="col10">(0.16)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">ACFT</oasis:entry>

         <oasis:entry colname="col3">0.04</oasis:entry>

         <oasis:entry colname="col4">(0.05)</oasis:entry>

         <oasis:entry colname="col5">0.25</oasis:entry>

         <oasis:entry colname="col6">(0.27)</oasis:entry>

         <oasis:entry colname="col7">0.03</oasis:entry>

         <oasis:entry colname="col8">(0.03)</oasis:entry>

         <oasis:entry colname="col9">0.10</oasis:entry>

         <oasis:entry colname="col10">(0.09)</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">SURF</oasis:entry>

         <oasis:entry colname="col3">0.04</oasis:entry>

         <oasis:entry colname="col4"><bold>0.74</bold></oasis:entry>

         <oasis:entry colname="col5">0.25</oasis:entry>

         <oasis:entry colname="col6"><bold>1.02</bold></oasis:entry>

         <oasis:entry colname="col7">0.03</oasis:entry>

         <oasis:entry colname="col8">(<bold>0.35</bold>)</oasis:entry>

         <oasis:entry colname="col9">0.10</oasis:entry>

         <oasis:entry colname="col10">(<bold>0.35</bold>)</oasis:entry>

       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p>Distinct improvement (bold). Distinct degradation (italic).
Cross-validation (parentheses).</p></table-wrap-foot></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4"><caption><p>Emission area coordinates. EA1–4 are used for BB totals and EA5–9
are used for anthropogenic totals.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="center"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:colspec colnum="3" colname="col3" align="center"/>
     <oasis:colspec colnum="4" colname="col4" align="center"/>
     <oasis:colspec colnum="5" colname="col5" align="center"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">LON<inline-formula><mml:math id="M290" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">min</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">LON<inline-formula><mml:math id="M291" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">max</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">LAT<inline-formula><mml:math id="M292" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">min</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">LAT<inline-formula><mml:math id="M293" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">max</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">EA1</oasis:entry>  
         <oasis:entry colname="col2">122.5<inline-formula><mml:math id="M294" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">120.5<inline-formula><mml:math id="M295" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">35.7<inline-formula><mml:math id="M296" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">38.5<inline-formula><mml:math id="M297" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA2</oasis:entry>  
         <oasis:entry colname="col2">123.8<inline-formula><mml:math id="M298" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">122.1<inline-formula><mml:math id="M299" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">38.9<inline-formula><mml:math id="M300" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">40.4<inline-formula><mml:math id="M301" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA3</oasis:entry>  
         <oasis:entry colname="col2">124.3<inline-formula><mml:math id="M302" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">122.9<inline-formula><mml:math id="M303" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">40.4<inline-formula><mml:math id="M304" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">41.7<inline-formula><mml:math id="M305" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA4</oasis:entry>  
         <oasis:entry colname="col2">122.1<inline-formula><mml:math id="M306" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">120.0<inline-formula><mml:math id="M307" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">38.5<inline-formula><mml:math id="M308" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">40.4<inline-formula><mml:math id="M309" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA5</oasis:entry>  
         <oasis:entry colname="col2">117.8<inline-formula><mml:math id="M310" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">116.9<inline-formula><mml:math id="M311" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">32.1<inline-formula><mml:math id="M312" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">33.4<inline-formula><mml:math id="M313" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA6</oasis:entry>  
         <oasis:entry colname="col2">121.0<inline-formula><mml:math id="M314" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">117.8<inline-formula><mml:math id="M315" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">33.4<inline-formula><mml:math id="M316" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">34.6<inline-formula><mml:math id="M317" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA7</oasis:entry>  
         <oasis:entry colname="col2">123.0<inline-formula><mml:math id="M318" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">121.0<inline-formula><mml:math id="M319" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">36.6<inline-formula><mml:math id="M320" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">38.8<inline-formula><mml:math id="M321" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA8</oasis:entry>  
         <oasis:entry colname="col2">120.6<inline-formula><mml:math id="M322" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">118.6<inline-formula><mml:math id="M323" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">35.2<inline-formula><mml:math id="M324" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">37.0<inline-formula><mml:math id="M325" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA9</oasis:entry>  
         <oasis:entry colname="col2">118.0<inline-formula><mml:math id="M326" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">116.5<inline-formula><mml:math id="M327" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">34.0<inline-formula><mml:math id="M328" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">36.0<inline-formula><mml:math id="M329" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA10</oasis:entry>  
         <oasis:entry colname="col2">116.9<inline-formula><mml:math id="M330" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col3">115.0<inline-formula><mml:math id="M331" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W</oasis:entry>  
         <oasis:entry colname="col4">32.1<inline-formula><mml:math id="M332" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>  
         <oasis:entry colname="col5">33.4<inline-formula><mml:math id="M333" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>The temporal distributions of prior and posterior BB emissions within the
four EAs are shown in Fig. <xref ref-type="fig" rid="Ch1.F9"/> across all inversion scenarios on
22 June. The FINNv1.5 prior is an extreme outlier on the local afternoon of
21 June for EA1, EA2, and EA4. The same is true all day on 22 June for EA2,
where the posteriors from other scenarios adjust toward the FINNv1.5 prior.
Meanwhile, at other times when FINNv1.5 appears to converge toward the
posteriors found using the other two priors, the prior relative uncertainty
of <inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">3.8</mml:mn></mml:mrow></mml:math></inline-formula> is too restrictive to allow full convergence, since the priors
differ by <inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>. EA1 is characterized by decreases for all scenarios at
all times. EA2, EA3, and EA4 exhibit early morning peaks between 03:00 and
06:00 <inline-formula><mml:math id="M336" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula> that were not captured in the prior. In separate sensitivity
tests, these peaks only appear when <inline-formula><mml:math id="M337" display="inline"><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M338" display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula>, and become more
prevalent as <inline-formula><mml:math id="M339" display="inline"><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is increased. <xref ref-type="bibr" rid="bib1.bibx63" id="text.85"/> attributed
similar behavior in posterior estimates of the 2013 Rim Fire to persistent
large-scale burning. <?xmltex \hack{\mbox\bgroup}?><xref ref-type="bibr" rid="bib1.bibx83" id="text.86"/><?xmltex \hack{\egroup}?> found similar,
less pronounced bimodal behavior for all of North America, which could be
more noticeable in a regional inversion. Another possibility on 22 June 2008
is that the early morning burning is caused by the transient fire initiation
event, which would explain the ramping of emissions for the QFED and FINNv1.5
posteriors in EA2. For both QFED and FINNv1.0, reducing the correlation
length to <inline-formula><mml:math id="M340" display="inline"><mml:mrow><mml:msub><mml:mi>L</mml:mi><mml:mi>h</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">18</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M341" display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> reduces the analysis increment in all EAs. This
is especially apparent in EA4 for FINN_L18, where the increment is
negligible.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>Prior and posterior model versus 24 June ARCTAS-CARB observations
for the 23/24 June FINN_STD inversion. The left plot uses both IMPROVE
(23 June) and ARCTAS-CARB observations in the inversion. The middle plot uses
only ARCTAS-CARB. The plot on the right shows the progression of the slope
and <inline-formula><mml:math id="M342" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> from the prior, “0”, to the posterior, “a”, for similar linear
regressions.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f06.pdf"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p>Prior and posterior grid-scale BB emissions of BC per 24 h for
FINN_STD and QFED_STD on 22 June, 00:00–23:00 Z and 23 June
00:00–24 June 23:00 Z. All emissions are expressed for a 24 <inline-formula><mml:math id="M343" display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula>
average. EA1–4 are outlined with black boxes.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f07.pdf"/>

        </fig>

      <p>The differing diurnal patterns in EA2 across scenarios could be attributed to
variation in plume heights, QFED regridding errors, and the regularization
term of the cost function. The observations most sensitive to EA2 sources
were captured within or very near fire plumes. Plume heights are calculated
hourly in an online 1-D vertical mixing scheme in WRF-Chem
<xref ref-type="bibr" rid="bib1.bibx18 bib1.bibx19 bib1.bibx25" id="paren.87"/>,
which depends strongly on burned areas. With FINN, the areas are provided for
each fire independently, while for QFED the areas use a default value of
0.25 <inline-formula><mml:math id="M344" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> per fire. In both cases, the maximum area burned per grid
cell per day is 2 <inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>. The regridding error discussed in
Sect. <xref ref-type="sec" rid="Ch1.S2.SS2"/> introduces fire locational errors, especially in EA2. A
small error in vertical or horizontal mapping of a discrete point source on
the model grid could hinder the optimization in distinguishing it from
others. The uniform relative uncertainty in the prior inhibits consolidation
of multiple posteriors when the prior spread is heterogeneous and sometimes
very large. Quantifying the heterogeneity of uncertainty could contribute to
posterior agreement between inversions using different priors, as well as to
reducing the cost function.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p>BB analysis increment (posterior minus prior) per 24 h and
posterior linear scaling factor (<inline-formula><mml:math id="M346" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>) for the two primary BB scenarios on
22 June 00:00–23:00 Z and 23 June 00:00 Z–24 June 23:00 Z. EA1–4 are
outlined with black boxes.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f08.png"/>

        </fig>

      <p>The spread of local emissions provides some sense of that heterogeneity. Each
EA covers a region approximately the size of a grid box in a global
simulation with a chemical transport model. Due to the nature of variance
aggregation, uncertainty grows as the grid scale gets smaller. In individual
EAs, the spread between FINNv1.0 and QFED priors is <inline-formula><mml:math id="M347" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2–<inline-formula><mml:math id="M348" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>6 for
both hourly (Fig. <xref ref-type="fig" rid="Ch1.F9"/>) and daily (Table <xref ref-type="table" rid="Ch1.T5"/>) strength
on 22 June. If the median emission strength lies in the middle, then a proxy
for prior EA relative uncertainty is <inline-formula><mml:math id="M349" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:msqrt><mml:mn mathvariant="normal">2</mml:mn></mml:msqrt><mml:mo>-</mml:mo><mml:mo>×</mml:mo><mml:msqrt><mml:mn mathvariant="normal">6</mml:mn></mml:msqrt><mml:mo>=</mml:mo><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1.4</mml:mn><mml:mo>-</mml:mo><mml:mo>×</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">2.4</mml:mn></mml:mrow></mml:math></inline-formula>. Since the two inventories use identical diurnal
patterns, the hourly estimate is missing information about uncertainties in
daily emission timing. Using the posterior spread in a similar way gives
approximate EA uncertainties of <inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:msqrt><mml:mn mathvariant="normal">3</mml:mn></mml:msqrt><mml:mo>-</mml:mo><mml:mo>×</mml:mo><mml:msqrt><mml:mn mathvariant="normal">10</mml:mn></mml:msqrt><mml:mo>=</mml:mo><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1.7</mml:mn><mml:mo>-</mml:mo><mml:mo>×</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">3.2</mml:mn></mml:mrow></mml:math></inline-formula> on hourly scales and <inline-formula><mml:math id="M351" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:msqrt><mml:mn mathvariant="normal">2</mml:mn></mml:msqrt><mml:mo>-</mml:mo><mml:mo>×</mml:mo><mml:msqrt><mml:mn mathvariant="normal">7</mml:mn></mml:msqrt><mml:mo>=</mml:mo><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1.4</mml:mn><mml:mo>-</mml:mo><mml:mo>×</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">2.6</mml:mn></mml:mrow></mml:math></inline-formula> on daily scales. This posterior estimate accounts for
contributions in the prior definitions, including regridding, plume rise, and
diurnal patterns. These ranges provide much more detail estimates than simply
taking the domain-wide ratio of total emissions for the campaign period.
However, the spread is itself missing information about uncertainty that
could be found through carrying out similar inversions across an ensemble of
model configurations and meteorological initial and boundary conditions
<xref ref-type="bibr" rid="bib1.bibx41" id="paren.88"><named-content content-type="pre">e.g.,</named-content></xref>, or by comparing many more
inventory priors <xref ref-type="bibr" rid="bib1.bibx82" id="paren.89"><named-content content-type="pre">e.g.,</named-content></xref> and posteriors. All
this is to say that the BB inventories used in this study are not provided
with analytical estimates of uncertainty, and a lack of information for
deriving such values at hourly grid scales is a topic for future research.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F10"/> shows the total prior and posterior anthropogenic
emissions and Fig. <xref ref-type="fig" rid="Ch1.F11"/> displays the analysis increment and
linear scaling factor for FINN_STD on 22 June and separately on 23–24 June.
The only difference in QFED_STD, not shown here, is that anthropogenic
scaling factors are shifted in the negative direction in the posterior,
likely due to the higher bias in that BB prior. The increments found in a new
set of EAs are presented in Table <xref ref-type="table" rid="Ch1.T6"/>.</p>
      <p>The 23 and 24 June observations provide much more detailed information about
anthropogenic sources. The analysis increment reveals potentially
misrepresented city-level emissions in the NEI05 prior. Posterior BC near
Barstow, Victorville/Hesperia, Fresno, Edwards Air Force Base, and El
Centro/Calexico are increased, while sources near the three coastal cities
are decreased. Since Barstow is a crossroads for the BNSF and the Union
Pacific railroads, and since Fresno, Victorville/Hesperia, and El
Centro/Calexico lie at switching locations for major rail lines, the
inversion results may suggest that the prior is missing diesel rail sources
of BC. However, for locations where the prior magnitude of BB and
anthropogenic emissions are of similar magnitude, their posteriors are
subject to projection from one sector to another. It is more likely that the
low bias fire emissions north of Fresno are responsible for the prior
underpredictions of 23 June surface concentration measurements exceeding
2 <inline-formula><mml:math id="M352" display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx29" id="paren.90"><named-content content-type="pre">see Fig. 5 of</named-content></xref>.
This is corroborated by the posterior BB emissions being scaled up near
Fresno on 23 and 24 June, and by the much smaller model bias for IMPROVE on
22 June before the fires started.</p>
      <p>There are also small negative increments near Los Angeles (EA6) and San
Francisco (EA7) during both the 22 June and 23/24 June inversions, which are
likely attributable to on-road mobile sources. These results are consistent
with model bias in surface and aircraft observations on 20 June near both of
those cities <xref ref-type="bibr" rid="bib1.bibx29" id="paren.91"/>.
<xref ref-type="bibr" rid="bib1.bibx48" id="text.92"/> found a decreasing trend in ambient
measurements of BC and in a fuel-based bottom–up inventory for both Los
Angeles and San Francisco from 1990 to 2010 that might not be captured for
the 2008 model year by the snapshot in NEI05. Using a similar fuel-based
approach, <xref ref-type="bibr" rid="bib1.bibx40" id="text.93"/> derived 2010 CO emissions in the South
Coast Air Basin surrounding Los Angeles that are <inline-formula><mml:math id="M353" display="inline"><mml:mrow><mml:mo>×</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>  the magnitude of NEI05. On-road and
other mobile sources make up 36 and 62 % of that difference,
respectively, and their bottom–up inventory matches more closely with NEI
2011. While not a perfect comparison to BC in 2008, the sign of error in
NEI05 relative to the coastal posterior and that study is consistent. An
inventory with sector-specific breakdowns of BC emissions, additional
inversions with more thorough speciated local observations, and higher
resolution would all be required to investigate sector-specific anthropogenic
pollution.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T5" specific-use="star"><caption><p>Total BB emissions for EAs and domain-wide during the 22 and
23/24 June inversions (averaged for a 24 h period). Absolute units are in
<inline-formula><mml:math id="M354" display="inline"><mml:mi mathvariant="normal">Mg</mml:mi></mml:math></inline-formula>. Note that the differences (<inline-formula><mml:math id="M355" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>) may not sum due to rounding.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="10">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right" colsep="1"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right" colsep="1"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:thead>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2"/>

         <oasis:entry rowsep="1" namest="col3" nameend="col5" align="center" colsep="1">FINN_STD </oasis:entry>

         <oasis:entry rowsep="1" namest="col6" nameend="col8" align="center" colsep="1">QFED_STD </oasis:entry>

         <oasis:entry rowsep="1" namest="col9" nameend="col10" align="center"><inline-formula><mml:math id="M356" display="inline"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">QFED</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">FINN</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:math></inline-formula></oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2"/>

         <oasis:entry colname="col3"><inline-formula><mml:math id="M357" display="inline"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col4"><inline-formula><mml:math id="M358" display="inline"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M359" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col6"><inline-formula><mml:math id="M360" display="inline"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col7"><inline-formula><mml:math id="M361" display="inline"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M362" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula></oasis:entry>

         <oasis:entry colname="col9">b</oasis:entry>

         <oasis:entry colname="col10">a</oasis:entry>

       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>
       <?xmltex \rotentry?>
         <oasis:entry colname="col1" morerows="3">22 Jun</oasis:entry>

         <oasis:entry colname="col2">EA1</oasis:entry>

         <oasis:entry colname="col3">14</oasis:entry>

         <oasis:entry colname="col4">4</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M363" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10</oasis:entry>

         <oasis:entry colname="col6">82</oasis:entry>

         <oasis:entry colname="col7">26</oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M364" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>55</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M365" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>5.8</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M366" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>6.4</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">EA2</oasis:entry>

         <oasis:entry colname="col3">6</oasis:entry>

         <oasis:entry colname="col4">30</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M367" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>24</oasis:entry>

         <oasis:entry colname="col6">9</oasis:entry>

         <oasis:entry colname="col7">15</oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M368" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>6</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M369" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.5</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M370" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>0.5</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">EA3</oasis:entry>

         <oasis:entry colname="col3">6</oasis:entry>

         <oasis:entry colname="col4">4</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M371" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2</oasis:entry>

         <oasis:entry colname="col6">29</oasis:entry>

         <oasis:entry colname="col7">7</oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M372" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>22</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M373" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>4.5</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M374" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.6</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">EA4</oasis:entry>

         <oasis:entry colname="col3">18</oasis:entry>

         <oasis:entry colname="col4">22</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M375" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>4</oasis:entry>

         <oasis:entry colname="col6">52</oasis:entry>

         <oasis:entry colname="col7">83</oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M376" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>31</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M377" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2.8</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M378" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3.8</oasis:entry>

       </oasis:row>
       <oasis:row rowsep="1">

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">DOMAIN</oasis:entry>

         <oasis:entry colname="col3">59</oasis:entry>

         <oasis:entry colname="col4">83</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M379" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>34</oasis:entry>

         <oasis:entry colname="col6">209</oasis:entry>

         <oasis:entry colname="col7">171</oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M380" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>38</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M381" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3.5</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M382" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2.1</oasis:entry>

       </oasis:row>
       <oasis:row>
       <?xmltex \rotentry?>
         <oasis:entry colname="col1" morerows="3">23+24 Jun</oasis:entry>

         <oasis:entry colname="col2">EA1</oasis:entry>

         <oasis:entry colname="col3">20</oasis:entry>

         <oasis:entry colname="col4">5</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M383" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>15</oasis:entry>

         <oasis:entry colname="col6">70</oasis:entry>

         <oasis:entry colname="col7">12</oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M384" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>58</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M385" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3.5</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M386" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2.5</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">EA2</oasis:entry>

         <oasis:entry colname="col3">28</oasis:entry>

         <oasis:entry colname="col4">11</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M387" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>16</oasis:entry>

         <oasis:entry colname="col6">96</oasis:entry>

         <oasis:entry colname="col7">29</oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M388" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>67</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M389" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3.5</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M390" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2.6</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">EA3</oasis:entry>

         <oasis:entry colname="col3">17</oasis:entry>

         <oasis:entry colname="col4">12</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M391" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5</oasis:entry>

         <oasis:entry colname="col6">37</oasis:entry>

         <oasis:entry colname="col7">20</oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M392" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>17</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M393" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2.2</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M394" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.7</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col2">EA4</oasis:entry>

         <oasis:entry colname="col3">32</oasis:entry>

         <oasis:entry colname="col4">108</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M395" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>77</oasis:entry>

         <oasis:entry colname="col6">107</oasis:entry>

         <oasis:entry colname="col7">107</oasis:entry>

         <oasis:entry colname="col8">0</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M396" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3.4</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M397" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.0</oasis:entry>

       </oasis:row>
       <oasis:row>

         <oasis:entry colname="col1"/>

         <oasis:entry colname="col2">DOMAIN</oasis:entry>

         <oasis:entry colname="col3">138</oasis:entry>

         <oasis:entry colname="col4">249</oasis:entry>

         <oasis:entry colname="col5"><inline-formula><mml:math id="M398" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>111</oasis:entry>

         <oasis:entry colname="col6">471</oasis:entry>

         <oasis:entry colname="col7">354</oasis:entry>

         <oasis:entry colname="col8"><inline-formula><mml:math id="M399" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>117</oasis:entry>

         <oasis:entry colname="col9"><inline-formula><mml:math id="M400" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3.4</oasis:entry>

         <oasis:entry colname="col10"><inline-formula><mml:math id="M401" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.4</oasis:entry>

       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T6" specific-use="star"><caption><p>Total anthropogenic emissions for EAs and domain-wide during the 22
and 23/24 June inversions (averaged for a 24 h period). The posterior for
23/24 June is from an inversion using both the IMPROVE and ARACTAS-CARB
observations. Results shown are for the FINN_STD scenario. Absolute units
are in <inline-formula><mml:math id="M402" display="inline"><mml:mi mathvariant="normal">Mg</mml:mi></mml:math></inline-formula>. Note that the differences (<inline-formula><mml:math id="M403" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>) may not sum due to
rounding.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right" colsep="1"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right" colsep="1"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry rowsep="1" namest="col2" nameend="col4" align="center" colsep="1">22 Jun </oasis:entry>  
         <oasis:entry rowsep="1" namest="col5" nameend="col7" align="center" colsep="1">23/24 Jun </oasis:entry>  
         <oasis:entry rowsep="1" namest="col8" nameend="col9" align="center"><inline-formula><mml:math id="M404" display="inline"><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mn mathvariant="normal">23</mml:mn><mml:mo>+</mml:mo><mml:mn mathvariant="normal">24</mml:mn><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mi mathvariant="normal">Jun</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mrow><mml:mn mathvariant="normal">22</mml:mn><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi mathvariant="normal">Jun</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M407" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M408" display="inline"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M409" display="inline"><mml:mrow><mml:mi mathvariant="normal">Σ</mml:mi><mml:msub><mml:mi>E</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M410" display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col8">b</oasis:entry>  
         <oasis:entry colname="col9">a</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">EA5</oasis:entry>  
         <oasis:entry colname="col2">5</oasis:entry>  
         <oasis:entry colname="col3">5</oasis:entry>  
         <oasis:entry colname="col4">0</oasis:entry>  
         <oasis:entry colname="col5">7</oasis:entry>  
         <oasis:entry colname="col6">3</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M411" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3</oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math id="M412" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.4</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math id="M413" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>0.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA6</oasis:entry>  
         <oasis:entry colname="col2">12</oasis:entry>  
         <oasis:entry colname="col3">8</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M414" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4</oasis:entry>  
         <oasis:entry colname="col5">17</oasis:entry>  
         <oasis:entry colname="col6">9</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M415" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8</oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math id="M416" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.4</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math id="M417" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA7</oasis:entry>  
         <oasis:entry colname="col2">10</oasis:entry>  
         <oasis:entry colname="col3">6</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M418" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5</oasis:entry>  
         <oasis:entry colname="col5">16</oasis:entry>  
         <oasis:entry colname="col6">8</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M419" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8</oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math id="M420" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.6</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math id="M421" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA8</oasis:entry>  
         <oasis:entry colname="col2">3</oasis:entry>  
         <oasis:entry colname="col3">2</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M422" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1</oasis:entry>  
         <oasis:entry colname="col5">5</oasis:entry>  
         <oasis:entry colname="col6">25</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M423" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>20</oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math id="M424" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.6</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math id="M425" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>9.9</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA9</oasis:entry>  
         <oasis:entry colname="col2">5</oasis:entry>  
         <oasis:entry colname="col3">4</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M426" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1</oasis:entry>  
         <oasis:entry colname="col5">6</oasis:entry>  
         <oasis:entry colname="col6">11</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M427" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>4</oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math id="M428" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.3</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math id="M429" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>2.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EA10</oasis:entry>  
         <oasis:entry colname="col2">2</oasis:entry>  
         <oasis:entry colname="col3">2</oasis:entry>  
         <oasis:entry colname="col4">0</oasis:entry>  
         <oasis:entry colname="col5">3</oasis:entry>  
         <oasis:entry colname="col6">8</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M430" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>5</oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math id="M431" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.4</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math id="M432" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>3.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">DOMAIN</oasis:entry>  
         <oasis:entry colname="col2">81</oasis:entry>  
         <oasis:entry colname="col3">68</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M433" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>13</oasis:entry>  
         <oasis:entry colname="col5">114</oasis:entry>  
         <oasis:entry colname="col6">123</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M434" display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>9</oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math id="M435" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.4</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math id="M436" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>1.8</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p>Hourly BB diurnal emission patterns for the four EAs and all
inversion scenarios for 22 June, 00:00–23:00 Z, with the time shown in
<inline-formula><mml:math id="M437" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula>. The priors are shown as black lines, while the posteriors from
specific inversion scenarios are shown in color. Note that FINNv1.0 did not
have any fires in EA4 on 21 June.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f09.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS4">
  <title>Error diagnostics</title>
      <p>Analysis of posterior emissions uncertainties is useful for
understanding the value of the posterior emissions themselves. The diagonal
terms of <inline-formula><mml:math id="M438" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> are the posterior variances,
<inline-formula><mml:math id="M439" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">σ</mml:mi><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, which are always smaller than prior variances. The
variance reduction could instead be presented in <inline-formula><mml:math id="M440" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> space, by utilizing
Eq. (<xref ref-type="disp-formula" rid="Ch1.E16"/>). However,
<inline-formula><mml:math id="M441" display="inline"><mml:mrow><mml:msup><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>&lt;</mml:mo><mml:msup><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msup><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> is not guaranteed when
<inline-formula><mml:math id="M442" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>&gt;</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, because the posterior relative emission uncertainty
depends on <inline-formula><mml:math id="M443" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mi>a</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. For this work, the reductions in variance are presented
in CV space. The low-rank estimate of <inline-formula><mml:math id="M444" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is only valid for
linear perturbations away from <inline-formula><mml:math id="M445" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. The final outer loop estimate of
<inline-formula><mml:math id="M446" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is the most accurate, since it is linearized around the
state preceeding <inline-formula><mml:math id="M447" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. A quantitative measure of error reduction in
the <inline-formula><mml:math id="M448" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>th outer loop in the <inline-formula><mml:math id="M449" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>th CV is

                <disp-formula id="Ch1.E25" content-type="numbered"><mml:math id="M450" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">P</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow><mml:mi mathvariant="normal">a</mml:mi></mml:msubsup></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>∈</mml:mo><mml:mo>[</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          Values of <inline-formula><mml:math id="M451" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> closer to 1 reflect locations where the observations
provide a stronger constraint than the prior. This estimate may not reflect
the entire error reduction, since it does not capture potential reductions in
previous outer loops. Without propagating updated estimates for <inline-formula><mml:math id="M452" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula>
to subsequent outer loops <xref ref-type="bibr" rid="bib1.bibx70" id="paren.94"><named-content content-type="pre">e.g.,</named-content></xref>, we
also define <inline-formula><mml:math id="M453" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">agg</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, a qualitative metric that accounts for
increases in curvature (decreases in error) in all outer loops:

                <disp-formula id="Ch1.E26" content-type="numbered"><mml:math id="M454" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">agg</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:munderover><mml:mo movablelimits="false">∏</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>k</mml:mi></mml:munderover><mml:msub><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">P</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow><mml:mi mathvariant="normal">a</mml:mi></mml:msubsup></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>∈</mml:mo><mml:mo>[</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          <inline-formula><mml:math id="M455" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">agg</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> reveals additional information about observation
footprints not shown by <inline-formula><mml:math id="M456" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. The nonlinear nature of the problem
means <inline-formula><mml:math id="M457" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">agg</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is not quantitative.</p>
      <p>Both (<inline-formula><mml:math id="M458" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) and <inline-formula><mml:math id="M459" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">agg</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are presented in
Figs. <xref ref-type="fig" rid="Ch1.F12"/> and <xref ref-type="fig" rid="Ch1.F13"/> for the BB and anthropogenic
members of <inline-formula><mml:math id="M460" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, respectively. Fifty inner loop iterations were taken
in the final outer loop to improve <inline-formula><mml:math id="M461" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> estimates. <inline-formula><mml:math id="M462" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is
<inline-formula><mml:math id="M463" display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">45</mml:mn></mml:mrow></mml:math></inline-formula> % across all scenarios, except for QFED_STD BB sources near the
IMPROVE sites on 23/24 June. If the inner loop were halted at 10 iterations,
the error reduction estimates would be reduced by up to <inline-formula><mml:math id="M464" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 %
(i.e., 35 instead of 45 %) in the darkest grid cells. The BB error
reduction shown in Fig. <xref ref-type="fig" rid="Ch1.F12"/> has similar spatial distributions
for FINN_STD and QFED_STD scenarios, but differs significantly between the
two time periods due to the different spatial coverage of the observations.
The reductions in the north on 22 June are more disperse for QFED_STD, which
could be caused by the same regridding errors and
plume rise differences that
influence the posterior emissions. There is also more error reduction in the
south for the QFED_STD emissions. In general, the grid-scale uncertainty
improvement is confined to sources close to the observations.</p>
      <p>The most obvious application of <inline-formula><mml:math id="M465" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> is to evaluate the footprint of a set
of measurements. For example, the large relative BB emission increments in
EA1–EA3 on 23/24 June indicate that distant observations can have a large
impact on the posterior emissions magnitudes. However, <inline-formula><mml:math id="M466" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> in
Fig. <xref ref-type="fig" rid="Ch1.F12"/> indicates there is nearly zero uncertainty reduction
for those emissions. Also, upon considering the last two columns of
Table <xref ref-type="table" rid="Ch1.T6"/>, one might conclude that there is a missing weekend
(22 June) to weekday (23/24 June) variation in BC emissions within EA8–10.
However, Fig. <xref ref-type="fig" rid="Ch1.F13"/> shows that the 22 June observations only
weakly reduce uncertainty in emissions.</p>
      <p>In a more tangible application, <inline-formula><mml:math id="M467" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> can be used to assess existing and
future observing strategies in a similar way to how <xref ref-type="bibr" rid="bib1.bibx80" id="text.95"/>
used adjoint sensitivity information to plan future meteorological observing
sites to improve forecasts of extreme dust events in the Korean Peninsula.
Fig. <xref ref-type="fig" rid="Ch1.F13"/> presents anthropogenic <inline-formula><mml:math id="M468" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> for different
combinations of surface and aircraft observations on 23/24 June. The surface
observations primarily resolve sources near Fresno, and to a lesser extent
near Los Angeles. Since the purpose of the IMPROVE network is to measure
background concentrations, it is mostly successful on 23 June in not being
influenced by anthropogenic sources of BC from the major cities. If the goal
were to measure anthropogenic sources, inflows, or domain-wide concentrations
on daily timescales, then <inline-formula><mml:math id="M469" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> would suggest using a different surface
network distribution. Such a conclusion does not conflict with the success of
using IMPROVE observations to provide top–down constraints on both BB and
anthropogenic emissions on monthly timescales
<xref ref-type="bibr" rid="bib1.bibx47" id="paren.96"><named-content content-type="pre">e.g.,</named-content></xref>. That strategy is consistent with what is
generally known: further decreasing uncertainty requires observing the same
phenomena more thoroughly. For hourly to daily timescales, more observations
are needed close to and downwind of chemical sources, and at high spatial and
temporal resolution (e.g., from repeated aircraft overpasses, extra aircraft,
hourly-average surface sites, or satellites).</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F10" specific-use="star"><caption><p>Prior and posterior grid-scale anthropogenic emissions of BC per 24 h
for FINN_STD on 22 June, 00:00–23:00 Z (top row) and 23 June, 00:00 Z to 24 June,
23:00 Z. EA5–10 are outlined with black boxes.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f10.png"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F11" specific-use="star"><caption><p>Anthropogenic analysis increment (posterior minus prior) per 24 h
and posterior linear scaling factor (<inline-formula><mml:math id="M470" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>) for the
<bold>(a)</bold> FINN_STD (22),
<bold>(b)</bold> FINN_STD (23/24), <bold>(c)</bold> ACFT, and <bold>(d)</bold> SURF inversion scenarios.
EA5–9 are outlined with black boxes in the scaling factor plots.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f11.pdf"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F12" specific-use="star"><caption><p>BB error reduction in the final outer loop (<inline-formula><mml:math id="M471" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) and
aggregated across all outer loops (<inline-formula><mml:math id="M472" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">agg</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) for the two primary
BB scenarios on 22 June 00:00–23:00 Z and 23 June, 00:00 Z–24 June 23:00 Z. The
ARCTAS-CARB DC8 flightpath and IMPROVE sites at model grid centers are
overlaid.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f12.pdf"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F13" specific-use="star"><caption><p>Anthropogenic error reduction in the final outer loop
(<inline-formula><mml:math id="M473" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>o</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) and aggregated across all outer loops (<inline-formula><mml:math id="M474" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">agg</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)
for the <bold>(a)</bold> FINN_STD (22), <bold>(b)</bold> FINN_STD (23/24), <bold>(c)</bold> ACFT, and <bold>(d)</bold> SURF
inversion scenarios. The ARCTAS-CARB DC8 flightpath and IMPROVE sites at
model grid centers are overlaid.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f13.pdf"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><caption><p>Eigenvalue spectra for FINN_STD and QFED_STD in the final outer
loop on 22 June. The lines show the estimate of the spectrum
<inline-formula><mml:math id="M475" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> in every fourth inner loop iteration,
<inline-formula><mml:math id="M476" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula>. The black numbers in parentheses are the estimates of DOF that include
eigenvalues in the sets (converged to within 5 % of the previous
estimate, all available). The red numbers in brackets are the truncated
estimates of DOF using the most completely converged set of eigenvalues
available in the 50th iteration.</p></caption>
          <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f14.pdf"/>

        </fig>

      <p>Another piece of information useful for comparing observing configurations
and inversion scenarios is the trace of the resolution matrix, or degrees of
freedom for signal, i.e.,

                <disp-formula id="Ch1.E27" content-type="numbered"><mml:math id="M477" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="normal">DOF</mml:mi><mml:mo>=</mml:mo><mml:mtext>Tr</mml:mtext><mml:mfenced close="]" open="["><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup><mml:msup><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          which is equal to the number of modes of variability in the emissions that
are resolved by the observations
<?xmltex \hack{\mbox\bgroup}?><xref ref-type="bibr" rid="bib1.bibx72 bib1.bibx58 bib1.bibx61" id="paren.97"/><?xmltex \hack{\egroup}?>.
Substituting the approximation for <inline-formula><mml:math id="M478" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">P</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> from
Eq. (<xref ref-type="disp-formula" rid="Ch1.E23"/>),

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M479" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="normal">DOF</mml:mi><mml:mo>≈</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>n</mml:mi><mml:mo>-</mml:mo><mml:mtext>Tr</mml:mtext><mml:mfenced open="[" close="]"><mml:mfenced open="(" close=")"><mml:mi mathvariant="bold">B</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="bold">U</mml:mi><mml:mfenced open="(" close=")"><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>l</mml:mi></mml:munderover><mml:mfenced open="(" close=")"><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup></mml:mfenced><mml:msup><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E28"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mspace linebreak="nobreak" width="1em"/><mml:mo>≈</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>-</mml:mo><mml:mtext>Tr</mml:mtext><mml:mfenced open="[" close="]"><mml:mi mathvariant="bold">U</mml:mi><mml:mfenced open="(" close=")"><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>l</mml:mi></mml:munderover><mml:mfenced open="(" close=")"><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            Since <inline-formula><mml:math id="M480" display="inline"><mml:mi mathvariant="bold">U</mml:mi></mml:math></inline-formula> is square,
<inline-formula><mml:math id="M481" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and
<inline-formula><mml:math id="M482" display="inline"><mml:mrow><mml:mtext>Tr</mml:mtext><mml:mfenced close="]" open="["><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:mo>=</mml:mo><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>, the expression
simplifies as

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M483" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">DOF</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>-</mml:mo><mml:mtext>Tr</mml:mtext><mml:mfenced close="]" open="["><mml:mfenced open="(" close=")"><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>l</mml:mi></mml:munderover><mml:mfenced open="(" close=")"><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">B</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mspace linebreak="nobreak" width="1em"/><mml:mo>≈</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>l</mml:mi></mml:munderover><mml:mfenced close=")" open="("><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mfenced><mml:mtext>Tr</mml:mtext><mml:mfenced close="]" open="["><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E29"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace width="1em" linebreak="nobreak"/><mml:mo>≈</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>l</mml:mi></mml:munderover><mml:mfenced close=")" open="("><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            Therefore, the only information needed to compute DOF is the eigenvalues of
<inline-formula><mml:math id="M484" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">T</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Each inner loop, <inline-formula><mml:math id="M485" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, has the potential to constrain one
additional mode of variability in the emission scaling factors. For all of
our inversion scenarios, the leading eigenvalue is on the order of
<inline-formula><mml:math id="M486" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, which is equal to the condition number of the full-rank Hessian.
As the Lanczos optimization proceeds, each subsequent <inline-formula><mml:math id="M487" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is
smaller, asymptotically approaching unity, and each eigenmode provides less
information than the one preceding it about scaling factor variability.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F14"/> gives three estimates of DOF at each level of
truncation in the final outer loop, that is, if higher degrees of eigenvalues
were ignored. In that figure, we plot eigenvalue spectra of the FINN_STD and
QFED_STD scenarios on 22 June. Similar to <inline-formula><mml:math id="M488" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>, we use a 50-iteration
linear optimization to improve the bounds on DOF. The <inline-formula><mml:math id="M489" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:math></inline-formula> estimate of the
eigenvalue spectrum at each iteration is represented by a single colored
line. Each member of the eigenvalue spectrum, represented by vertical grid
lines in Fig. <xref ref-type="fig" rid="Ch1.F14"/>, converges toward an upper bound as more
iterations are taken. Initial guesses for the least dominant eigenvalues are
less than 1 for <inline-formula><mml:math id="M490" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> for FINN_STD, but they exceed 1 after an
additional iteration, consistent with the properties of the Lanczos sequence.
The first DOF value in parentheses adheres to the philosophy that only
converged eigenvalues should be used to estimate DOF; it excludes
<inline-formula><mml:math id="M491" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> such that <inline-formula><mml:math id="M492" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is more than
5 % changed from the previous estimate. The second DOF value in
parentheses uses all of the current estimates of the eigenvalues available in
iteration <inline-formula><mml:math id="M493" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula>. This is still a conservative estimate of DOF, because the true
eigenvalues of the full-rank <inline-formula><mml:math id="M494" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">T</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are always larger than their
current numerical estimate. After enough iterations, the numerical growth in
DOF is very small, and further computation is not warranted. As the
eigenvalue spectra in Fig. <xref ref-type="fig" rid="Ch1.F14"/> and the cost function reduction
in Fig. <xref ref-type="fig" rid="Ch1.F3"/> show, this is long after the cost function is
converged enough for practical purposes. The posterior CVs, which are the
primary result from inverse modeling, do not change significantly in the
final outer loop. Finally, the best estimates of DOF in red brackets are
evaluated at different truncations using the most-converged values of the
eigenvalues found in the 22nd iteration.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15" specific-use="star"><caption><p>Eigenvalue spectra for SURF, ACFT, and SURF+ACFT in the final outer
loop on 23 and 24 June. The lines show the estimate of the spectrum
<inline-formula><mml:math id="M495" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi>l</mml:mi></mml:mrow></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> in every fourth inner loop iteration,
<inline-formula><mml:math id="M496" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula>. The black numbers in parentheses are the estimates of DOF that include
eigenvalues in the sets (converged to within 5 % of the previous
estimate, all available). The red numbers in brackets are the truncated
estimates of DOF using the most completely converged set of eigenvalues
available in the 50th iteration.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/7605/2017/acp-17-7605-2017-f15.pdf"/>

        </fig>

      <p>Similar to <inline-formula><mml:math id="M497" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>, the quantitative application of DOF is limited to the
final outer loop, when <inline-formula><mml:math id="M498" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>n</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is small enough that
<inline-formula><mml:math id="M499" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mo>|</mml:mo><mml:mrow><mml:msup><mml:mi>x</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:msub><mml:mo>≈</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mo>|</mml:mo><mml:mrow><mml:msup><mml:mi>x</mml:mi><mml:mi>n</mml:mi></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.
Absent the need to estimate the posterior Hessian, the outer loop could be
ended an iteration earlier. In the inner loop, truncated estimates of
<inline-formula><mml:math id="M500" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and its eigenvalue spectrum at earlier iterations will
provide conservative values for both DOF and <inline-formula><mml:math id="M501" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>. The actual DOF value is
higher than any value shown in Figs. <xref ref-type="fig" rid="Ch1.F14"/> (22 June)
and <xref ref-type="fig" rid="Ch1.F15"/> (23/24 June). Therefore, the 22 June observations
constrain <inline-formula><mml:math id="M502" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 14 modes of hourly grid-scale variability through 4D-Var in
both the FINN_STD and QFED_STD scenarios. Just like for <inline-formula><mml:math id="M503" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula>, the
optimization constrains additional modes in the earlier outer loop
iterations, but that quantification is not straightforward since DOF are
defined for linear behavior. If all outer loops were similar, then the total
DOF value for the entire nonlinear optimization is on the order of 30 to 40.</p>
      <p>As shown in Fig. <xref ref-type="fig" rid="Ch1.F15"/>, the DOF values on 23 and 24 June after 50
iterations are 10, 17, and 23 for the SURF, ACFT, and FINN_STD(23/24)
scenarios, respectively. The relative magnitudes show that using combined
surface and aircraft observations provides an additional value over using
either independently, although the two platforms might have some redundancy.
This conclusion is consistent with the maps of BB and anthropogenic <inline-formula><mml:math id="M504" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> in
Fig. <xref ref-type="fig" rid="Ch1.F13"/>, where the footprints of SURF and ACFT have slight
overlap near Los Angeles, but are otherwise independent. Additionally, the
higher DOF value of ACFT is consistent with its more widespread and larger
magnitude <inline-formula><mml:math id="M505" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> values. The slower eigenvalue convergence when both
observing types are utilized means that additional inner iterations could
yield higher estimates for DOF in that case. What is even more clear, and
intuitive, is that <inline-formula><mml:math id="M506" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> and DOF estimates require more iterations as the
number of constrained CVs increases, which is directly dependent on the
number of observations. The sparse <inline-formula><mml:math id="M507" display="inline"><mml:mi mathvariant="italic">ρ</mml:mi></mml:math></inline-formula> map for SURF in
Fig. <xref ref-type="fig" rid="Ch1.F13"/> and the large spike near Fresno illustrate that while
near-source surface measurements can be a powerful constraint, measurements
of background concentrations provide relatively little constraints to
characterize CA anthropogenic emissions on 1-day timescales.</p>
</sec>
<sec id="Ch1.S3.SS5">
  <title>Cross-validation</title>
      <p>As an additional evaluation of the robustness of the emission scaling
factors, we apply them in cross-validation tests. In two separate
evaluations, the 22 June scaling factors are applied to 23–26 June
emissions, and the 23/24 June scaling factors are applied to 25–26 June
emissions. The heterogeneous adjoint sensitivity signs and magnitudes for
each source sector we found on each day of the campaign
<xref ref-type="bibr" rid="bib1.bibx29" id="paren.98"/> are an indication that corrective scaling
factors in each day will be unique. In that work, we found that the 24 June
observations were most sensitive to southern California anthropogenic sources
on 24 June and to northern and southern California coastal sources of both
sectors on 23 June. The 26 June observations were most sensitive to northern
California fires, and the adjoint sensitivities were of opposite sign than on
23 and 24 June.</p>
      <p>As shown in Fig. <xref ref-type="fig" rid="Ch1.F4"/>, the cross-validated 22 June scaling
factors rarely generate improvements to model performance, when compared to
24 and 26 June aircraft observations. On 24 June, some of the high bias
predictions are corrected, or even over-compensated, but the low bias prior
locations are unaffected. Table <xref ref-type="table" rid="Ch1.T2"/> shows the <inline-formula><mml:math id="M508" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and slope
of the linear trend lines. The scatter of the fit for QFED_STD on 24 June
and the slope for FINN_STD on 26 June are slightly improved, but all other
metrics degrade. The increase in slope for FINN_STD comes as a result of
better fit to very large concentrations above the PBL associated with fire
sources on multiple previous days. The posterior scaling factors generated
from the 23/24 June inversion degrade the forecast of aircraft measurements
on 26 June. Since the posterior primarily serves to reduce coastal
anthropogenic and BB emissions, it is not surprising that it does not improve
a low bias prior 2 days later.</p>
      <p>Table <xref ref-type="table" rid="Ch1.T3"/> includes cross-validated surface measurements on
23 June and 26 June. There is very little change to the modeled surface
concentrations as a result of posterior scaling factors derived from
inversions that only use aircraft observations. Assimilating surface
observations on 23 June (Monday) does improve model comparisons to surface
observations on 26 June (Thursday). Those small improvements imply that
errors are weakly correlated between weekdays. Although it is beyond the
information content provided by the observations used in this work, future
studies could compare the efficacy of using weak multiday correlation in
<inline-formula><mml:math id="M509" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula> and the hard constraint of 24 <inline-formula><mml:math id="M510" display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula> periodic scaling factors
used herein. Aircraft and surface observations do not appear to be useful for
cross-validation of each other over the short timescales and limited set of
flights considered here. At least for this study period, when they are not
collocated, each provides some unique information to the inversion.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusions and future work</title>
      <p>We have presented the implementation and an application of
incremental chemical 4D-Var using an atmospheric chemistry model with online
meteorology in WRFDA-Chem. This work expands on our previous efforts to
develop the ADM and TLM in WRFPLUS-Chem <xref ref-type="bibr" rid="bib1.bibx29" id="paren.99"/>.
This new inversion tool takes advantage of previous developments of
meteorological data assimilation in WRFDA
<xref ref-type="bibr" rid="bib1.bibx4 bib1.bibx32" id="paren.100"/>. That same framework
is applied to log-normally distributed emission scaling factors through an
exponential transform. We utilize the square root preconditioner for a CVT
using horizontal and temporal scaling factor correlations. The Lanczos linear
optimization algorithm in the inner loop allows for estimation of posterior
error and DOF for objectively evaluating observing systems. Outer loop
convergence is improved with a heuristic DGN multiplier, which allows the
incremental framework to handle the nonlinearity of the log-normal cost
function. While the optimizations herein focus exclusively on emissions,
which are known to be important drivers of model uncertainty in BC estimates
<xref ref-type="bibr" rid="bib1.bibx20 bib1.bibx82" id="paren.101"><named-content content-type="pre">e.g.,</named-content></xref>, other factors
such as meteorology, plume rise and deposition mechanisms may also affect the
model's predictions of BC concentrations.</p>
      <p>When applied to the ARCTAS-CARB campaign period, it is not clear which prior
emissions perform better. If assessment by initial cost function value alone
were meaningful, FINNv1.0 performs best. However, that could be due to
FINNv1.0 being biased low combined with the assumption of Gaussian
distributed model–observation errors. Positive residuals are weighted higher
than negative ones, even when relative errors are equal. There could be some
improvement to the posterior emissions by implementing the incremental
log-normal methods of <xref ref-type="bibr" rid="bib1.bibx16" id="text.102"/> or
<xref ref-type="bibr" rid="bib1.bibx64" id="text.103"/>. If the purpose of the inventory is to provide air
quality warnings to the major California cities, then FINNv1.0, FINNv1.5, and
QFEDv2.4r8 all have some built-in high bias that will err on the side of
caution. Their inability to reproduce high concentrations near sources points
to either a deficiency in the inventories, vertical mixing processes, or the
temporal observation averaging procedure followed herein, diagnosis of which
would require measurements of plume injection heights and widths. The
relative magnitudes of grid-scale fire and anthropogenic emissions make it
difficult to simultaneously constrain them without additional information.
More work should be done to improve both bottom–up and top–down estimates
of anthropogenic emissions outside of fire events. We also agree with
<xref ref-type="bibr" rid="bib1.bibx47" id="text.104"/>, who recommended multi-species inversions (e.g.,
BC and CO) to discern specific source sectors.</p>
      <p>Through the setup and application of the 4D-Var system, we gained valuable
knowledge to guide future modeling and measurement efforts. We found two
errors in the diurnal distribution of BB emissions and identified a scaling
necessary to apply QFED to the western US. Additionally, the highly
heterogeneous posterior scaling factors during ARCTAS-CARB raise questions
that the limited BB observations during that time period do not answer.
(1) Are BB emission errors always heterogeneous, or only during a transient
initiation stage like that observed in June 2008? If heterogeneity is
consistent outside initiation events, then inversions should apply weaker
inter-day correlation than the hard constraint used herein or have
independent scaling factors for each day. (2) Are the temporally bimodal
posterior emissions realistic, or are they an artifact of the correlation
timescale used? (3) Are the BB plume heights reasonable, and should they
follow a diurnal pattern? The current 1-D plume rise mechanism in WRF-Chem
depends strongly on specified burned areas, which are diurnally invariant and
highly uncertain <xref ref-type="bibr" rid="bib1.bibx8" id="paren.105"><named-content content-type="pre">e.g.,</named-content></xref>. The last two
questions indicate that there is value in continuous night (between 20:00 and
06:00 <inline-formula><mml:math id="M511" display="inline"><mml:mi mathvariant="normal">LT</mml:mi></mml:math></inline-formula>) and day measurements of the same fire region. Since models
poorly predict shallow boundary layers, the use of nighttime observations in
4D-Var would require characterization and subsequent model tuning of those
vertical mixing processes. Furthermore, if it is accepted that
high-resolution models are required to accurately predict degraded air
quality events, then high spatial and/or temporal resolution concentration
measurements from research campaigns or geostationary satellites are
necessary to provide the sufficient constraints on inventory errors. The
error reduction estimation method provided herein will be useful for planning
these future missions.</p>
      <p>Future applications of the WRFDA-Chem system developed here may consider
improvements such as the following. One possible way to reduce model
uncertainty would be to extend the multi-incremental 4D-Var available in
WRFDA <xref ref-type="bibr" rid="bib1.bibx85" id="paren.106"/> to the new scaling factor CVs.
Multi-incremental chemical 4D-Var would use a high-resolution model forecast
to generate trajectory checkpoint files (see
<xref ref-type="bibr" rid="bib1.bibx29" id="altparen.107"/>), and could take advantage of
improvements to chemical transport at higher resolution realized by using
online meteorology demonstrated by <xref ref-type="bibr" rid="bib1.bibx26" id="text.108"/> and
<xref ref-type="bibr" rid="bib1.bibx24" id="text.109"/>. In addition, four-dimensional data assimilation (FDDA) nudging
has been shown to improve wind fields and was used successfully in an LPDM
emission inversion <xref ref-type="bibr" rid="bib1.bibx41" id="paren.110"/>. Even after
exhausting methods to improve the posterior, the error contributions from
hard-coded descriptions of meteorology can be bounded using ensemble and
sensitivity tests
<xref ref-type="bibr" rid="bib1.bibx3 bib1.bibx41" id="paren.111"><named-content content-type="pre">e.g.,</named-content></xref>.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p>Single-particle soot photometer measurements of total black
carbon mass during ARCTAS-CARB are available at
<uri>https://www-air.larc.nasa.gov/cgi-bin/ArcView/arctas#KONDO.YUTAKA/.</uri>
(<xref ref-type="bibr" rid="bib1.bibx62" id="altparen.112"/>). Total elemental carbon mass measurements
taken by thermal optical reflectance at IMPROVE network sites are available
at <uri>http://views.cira.colostate.edu/fed/DataWizard/Default.aspx</uri>
(<xref ref-type="bibr" rid="bib1.bibx44" id="altparen.113"/>). The FINN and QFED biomass burning emissions
can be found at <uri>http://bai.acom.ucar.edu/Data/fire/</uri>
(<xref ref-type="bibr" rid="bib1.bibx75 bib1.bibx76" id="altparen.114"/>) and <uri>ftp://ftp.nccs.nasa.gov/aerosol/emissions/QFED/v2.4r8/0.1/</uri>
(<xref ref-type="bibr" rid="bib1.bibx13" id="altparen.115"/>), respectively. Information at <uri>https://ruc.noaa.gov/wrf/wrf-chem/</uri>
(<xref ref-type="bibr" rid="bib1.bibx27" id="altparen.116"/>) describes how to utilize NEI tabulated
anthropogenic source magnitudes and the biomass burning emissions with
WRF-Chem.</p>
  </notes><?xmltex \hack{\clearpage}?><app-group>

<app id="App1.Ch1.S1">
  <title>Relating DA and optimization formulations</title>
      <p>The linear optimization in the inner loop solves a system

              <disp-formula specific-use="align" content-type="numbered"><mml:math id="M512" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:munder><mml:mi mathvariant="normal">min</mml:mi><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover></mml:munder><mml:mspace width="1em" linebreak="nobreak"/><mml:mi>F</mml:mi><mml:mfenced close=")" open="("><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover></mml:mfenced><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">A</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>-</mml:mo><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>⊤</mml:mo></mml:msup><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo>+</mml:mo><mml:mi>c</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="App1.Ch1.E1"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mi mathvariant="bold">A</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          In our case, <inline-formula><mml:math id="M513" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>≡</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>. The equivalence of
Eqs. (<xref ref-type="disp-formula" rid="Ch1.E7"/>) and (<xref ref-type="disp-formula" rid="App1.Ch1.E1"/>) is apparent in
<xref ref-type="bibr" rid="bib1.bibx70" id="text.117"/>, who provide a notational translation
between publications on DA and those on minimization algorithms and
preconditioners. We repeat their translation to account for the differences
in formulation of Eqs. (<xref ref-type="disp-formula" rid="Ch1.E7"/>) and   (5) in
<xref ref-type="bibr" rid="bib1.bibx70" id="text.118"/>.</p>
      <p>The process starts by considering <xref ref-type="bibr" rid="bib1.bibx42" id="text.119"/> and
<xref ref-type="bibr" rid="bib1.bibx22" id="text.120"/>, who show that incremental 4D-Var is
equivalent to a truncated Gauss–Newton (TGN) optimization algorithm. The
incremental 4D-Var cost function is condensed to
          <disp-formula id="App1.Ch1.E2" content-type="numbered"><mml:math id="M514" display="block"><mml:mrow><mml:munder><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:munder><mml:mspace linebreak="nobreak" width="1em"/><mml:mi>J</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mfenced><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mi mathvariant="bold">f</mml:mi><mml:msup><mml:mfenced open="(" close=")"><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mfenced><mml:mo>⊤</mml:mo></mml:msup><mml:mi mathvariant="bold">f</mml:mi><mml:mfenced open="(" close=")"><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where

              <disp-formula id="App1.Ch1.E3" content-type="numbered"><mml:math id="M515" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">f</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mfenced><mml:mo>≡</mml:mo><mml:mfenced open="(" close=")"><mml:mtable class="matrix" columnalign="center" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mrow></mml:msup><mml:mfenced close=")" open="("><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        This definition of <inline-formula><mml:math id="M516" display="inline"><mml:mi mathvariant="bold">f</mml:mi></mml:math></inline-formula> is what enables incremental 4D-Var to be
characterized as TGN. The remainder of the derivation amounts to
substitutions. GN approximates Newton's method in each quadratic minimization
problem, <inline-formula><mml:math id="M517" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>, to solve for the increment <inline-formula><mml:math id="M518" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> in the linearized
system

              <disp-formula id="App1.Ch1.E4" content-type="numbered"><mml:math id="M519" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>J</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        This form is equivalent to multiplying Eq. (<xref ref-type="disp-formula" rid="Ch1.E10"/>) by the Hessian on
both sides. In our case, the right-hand side is <inline-formula><mml:math id="M520" display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">b</mml:mi><mml:mo>≡</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>J</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msup><mml:msup><mml:mi mathvariant="bold">F</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:mi mathvariant="bold">f</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced></mml:mrow></mml:math></inline-formula>, where

              <disp-formula id="App1.Ch1.E5" content-type="numbered"><mml:math id="M521" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">f</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>≡</mml:mo><mml:mo>-</mml:mo><mml:mfenced close=")" open="("><mml:mtable class="matrix" columnalign="center" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

        and

              <disp-formula id="App1.Ch1.E6" content-type="numbered"><mml:math id="M522" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msup><mml:mi mathvariant="bold">F</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>≡</mml:mo><mml:msub><mml:mi mathvariant="normal">∇</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:msub><mml:mi mathvariant="bold">f</mml:mi><mml:msub><mml:mo mathsize="1.1em" fence="true">|</mml:mo><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mtable class="matrix" columnalign="center" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        <inline-formula><mml:math id="M523" display="inline"><mml:mrow><mml:mi mathvariant="bold">f</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced></mml:mrow></mml:math></inline-formula> and its Jacobian are fixed for
each outer loop by the <inline-formula><mml:math id="M524" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> trajectory. Completing the GN algorithm, the
Hessian (<inline-formula><mml:math id="M525" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) is approximated by
<inline-formula><mml:math id="M526" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">A</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>≡</mml:mo><mml:msup><mml:msup><mml:mi mathvariant="bold">F</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">F</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, after ignoring
mixed partial derivatives of <inline-formula><mml:math id="M527" display="inline"><mml:mi mathvariant="bold">f</mml:mi></mml:math></inline-formula>. The Hessian of
Eq. (<xref ref-type="disp-formula" rid="App1.Ch1.E2"/>) matches that of Eq. (<xref ref-type="disp-formula" rid="Ch1.E7"/>), namely

              <disp-formula id="App1.Ch1.E7" content-type="numbered"><mml:math id="M528" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        After substitutions, Eq. (<xref ref-type="disp-formula" rid="App1.Ch1.E4"/>) becomes

              <disp-formula id="App1.Ch1.E8" content-type="numbered"><mml:math id="M529" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msup><mml:msup><mml:mi mathvariant="bold">F</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">F</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo></mml:mrow><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>-</mml:mo><mml:msup><mml:msup><mml:mi mathvariant="bold">F</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:mi mathvariant="bold">f</mml:mi><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

        which expands to

              <disp-formula specific-use="align" content-type="numbered"><mml:math id="M530" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi></mml:mfenced><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="App1.Ch1.E9"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mspace linebreak="nobreak" width="1em"/><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          Solving for <inline-formula><mml:math id="M531" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> gives the same update formula that would result
from setting Eq. (<xref ref-type="disp-formula" rid="Ch1.E9"/>) equal to zero,

              <disp-formula specific-use="align" content-type="numbered"><mml:math id="M532" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="italic">δ</mml:mi><mml:msup><mml:mi mathvariant="bold-italic">v</mml:mi><mml:mi>k</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:msub><mml:mi mathvariant="bold">I</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi mathvariant="bold">U</mml:mi></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="App1.Ch1.E10"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mspace linebreak="nobreak" width="1em"/><mml:mspace linebreak="nobreak" width="1em"/><mml:mfenced open="(" close=")"><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>b</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:msup><mml:mi mathvariant="bold">G</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>⊤</mml:mo></mml:msup><mml:msup><mml:mi mathvariant="bold">R</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold-italic">d</mml:mi><mml:mrow><mml:mi>o</mml:mi><mml:mo>,</mml:mo><mml:mi>k</mml:mi><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          Thus, by defining <inline-formula><mml:math id="M533" display="inline"><mml:mi mathvariant="bold">f</mml:mi></mml:math></inline-formula> appropriately, the equivalence between GN and
incremental 4D-Var is verified.</p>
</app>

<app id="App1.Ch1.S2">
  <title>Derivation of the truncated inverse Hessian</title>
      <p>After <inline-formula><mml:math id="M534" display="inline"><mml:mi>l</mml:mi></mml:math></inline-formula> inner iterations, the Lanczos vectors form an
orthogonal matrix, <inline-formula><mml:math id="M535" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">Q</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>[</mml:mo><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>,</mml:mo><mml:mo>.</mml:mo><mml:mo>.</mml:mo><mml:mo>,</mml:mo><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi>l</mml:mi></mml:msub><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>, which
satisfies
          <disp-formula id="App1.Ch1.E11" content-type="numbered"><mml:math id="M536" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi mathvariant="bold">Q</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">Q</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold">T</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        The extremal eigenvalues of <inline-formula><mml:math id="M537" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">T</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are good approximations to
<inline-formula><mml:math id="M538" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>'s extremal eigenvalues
<xref ref-type="bibr" rid="bib1.bibx21" id="paren.121"/>. <inline-formula><mml:math id="M539" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">T</mml:mi><mml:mi>l</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> can be decomposed as
          <disp-formula id="App1.Ch1.E12" content-type="numbered"><mml:math id="M540" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="bold">T</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">W</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:msub><mml:mi mathvariant="bold">Λ</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:msubsup><mml:mi mathvariant="bold">W</mml:mi><mml:mi>l</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        If we were to carry out the minimization for <inline-formula><mml:math id="M541" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> steps, we would find all the
Lanczos vectors, and would be able to construct the full <inline-formula><mml:math id="M542" display="inline"><mml:mi mathvariant="bold">T</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math id="M543" display="inline"><mml:mi mathvariant="bold">Q</mml:mi></mml:math></inline-formula> matrices. In that case, the orthogonal Lanczos vectors admit
<inline-formula><mml:math id="M544" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">QQ</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mi mathvariant="bold">I</mml:mi></mml:mrow></mml:math></inline-formula>. When combined with
Eq. (<xref ref-type="disp-formula" rid="App1.Ch1.E11"/>),
          <disp-formula id="App1.Ch1.E13" content-type="numbered"><mml:math id="M545" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="bold">QW</mml:mi><mml:mi mathvariant="bold">Λ</mml:mi><mml:msup><mml:mi mathvariant="bold">W</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">Q</mml:mi><mml:mo>⊤</mml:mo></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Because the eigenvectors are orthonormal,
          <disp-formula id="App1.Ch1.E14" content-type="numbered"><mml:math id="M546" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mi mathvariant="bold">QW</mml:mi></mml:mfenced><mml:mi mathvariant="bold">Λ</mml:mi><mml:msup><mml:mfenced close=")" open="("><mml:mi mathvariant="bold">QW</mml:mi></mml:mfenced><mml:mo>⊤</mml:mo></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Thus, the eigenvectors of <inline-formula><mml:math id="M547" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are approximately
equal to the normalized eigenvectors of <inline-formula><mml:math id="M548" display="inline"><mml:mi mathvariant="bold">T</mml:mi></mml:math></inline-formula>, premultiplied by the
matrix of Lanczos vectors, i.e.,
          <disp-formula id="App1.Ch1.E15" content-type="numbered"><mml:math id="M549" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mi mathvariant="bold">Λ</mml:mi><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>⊤</mml:mo></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where the <inline-formula><mml:math id="M550" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>th eigenvector of <inline-formula><mml:math id="M551" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is
          <disp-formula id="App1.Ch1.E16" content-type="numbered"><mml:math id="M552" display="block"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="bold">Q</mml:mi><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">w</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        The Hessian is constructed by
          <disp-formula id="App1.Ch1.E17" content-type="numbered"><mml:math id="M553" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mi mathvariant="bold">Λ</mml:mi><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>⊤</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>n</mml:mi></mml:munderover><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Since the Hessian and its inverse have identical eigenvectors and reciprocal
eigenvalues, the inverse is
          <disp-formula id="App1.Ch1.E18" content-type="numbered"><mml:math id="M554" display="block"><mml:mrow><mml:msup><mml:mfenced open="[" close="]"><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>n</mml:mi></mml:munderover><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Although this expression is usable, computational resource limitations
require <inline-formula><mml:math id="M555" display="inline"><mml:mrow><mml:mi>l</mml:mi><mml:mo>≪</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:math></inline-formula>. Truncating the sum yields a low rank estimate for the
inverse, and for the posterior error which it estimates.</p>
      <p>A more robust estimate of the posterior error is a low-rank update to the
full-rank prior covariance, <inline-formula><mml:math id="M556" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula>. To pursue that goal, first we
return to the linear algebra formula, and then add and subtract the identity
matrix to get

              <disp-formula specific-use="align" content-type="numbered"><mml:math id="M557" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi mathvariant="bold">Λ</mml:mi><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>⊤</mml:mo></mml:msup><mml:mo>-</mml:mo><mml:mi mathvariant="bold">I</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mi mathvariant="bold">Λ</mml:mi><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>⊤</mml:mo></mml:msup><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi mathvariant="bold">I</mml:mi><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>⊤</mml:mo></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="App1.Ch1.E19"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>n</mml:mi></mml:munderover><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          Now we repeat the truncation,

              <disp-formula id="App1.Ch1.E20" content-type="numbered"><mml:math id="M558" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub><mml:mo>≈</mml:mo><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>l</mml:mi></mml:munderover><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

        where <inline-formula><mml:math id="M559" display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is constructed from the partial set of Lanczos
vectors as
          <disp-formula id="App1.Ch1.E21" content-type="numbered"><mml:math id="M560" display="block"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="bold">Q</mml:mi><mml:mi>l</mml:mi></mml:msub><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">w</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:mi>l</mml:mi><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        Next we apply the Sherman–Morrison formula to recursively build the inverse
for each term in the sum. Throughout, we will take advantage of the following
two relationships for orthogonal vectors:

              <disp-formula specific-use="align"><mml:math id="M561" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi>j</mml:mi><mml:mo>⊤</mml:mo></mml:msubsup><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi>j</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="normal">and</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi>j</mml:mi><mml:mo>⊤</mml:mo></mml:msubsup><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>;</mml:mo><mml:mspace width="1em" linebreak="nobreak"/><mml:mi>j</mml:mi><mml:mo>≠</mml:mo><mml:mi>i</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula></p>
      <p>Starting with the first term,

              <disp-formula specific-use="align"><mml:math id="M562" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msubsup><mml:mi mathvariant="bold">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mfenced open="[" close="]"><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msup><mml:mi mathvariant="bold">I</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi mathvariant="bold">I</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:msup><mml:mi mathvariant="bold">I</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:msup><mml:mi mathvariant="bold">I</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">I</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mfenced close=")" open="("><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

          This result fits our desired proof. Now, for the second term,

              <disp-formula specific-use="align"><mml:math id="M563" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi mathvariant="bold">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mfenced close="}" open="{"><mml:msub><mml:mi mathvariant="bold">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msubsup><mml:mi mathvariant="bold">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msubsup><mml:mi mathvariant="bold">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mfenced close=")" open="("><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:msubsup><mml:mi mathvariant="bold">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:msubsup><mml:mi mathvariant="bold">N</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>-</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><?xmltex \hack{\hbox\bgroup\fontsize{8.5}{8.5}\selectfont$\displaystyle}?><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mfenced close="]" open="["><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:mfenced close=")" open="("><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:mfenced open="[" close="]"><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:mfenced open="[" close="]"><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><?xmltex \hack{$\egroup}?></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

          The dot products of orthogonal vectors cancels all terms in the numerator and
denominator except the ones multiplied by the identity matrix. The same
simplification applies to each additional sum, where the full sum can be
expressed as</p>
      <p><disp-formula specific-use="align"><mml:math id="M564" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi mathvariant="bold">N</mml:mi><mml:mi>l</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>-</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hbox\bgroup\fontsize{5.5}{5.5}\selectfont$\displaystyle}?><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mi>l</mml:mi></mml:munderover><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mfenced open="[" close="]"><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mfenced open="(" close=")"><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>r</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi>r</mml:mi></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mi>r</mml:mi><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup><mml:mfenced open="[" close="]"><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>r</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi>r</mml:mi></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi>r</mml:mi><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced></mml:mrow><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mfenced close=")" open="("><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup><mml:mfenced close="]" open="["><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:msubsup><mml:mo>∑</mml:mo><mml:mrow><mml:mi>r</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mfenced open="(" close=")"><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>r</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mi>r</mml:mi></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mi>r</mml:mi><mml:mo>⊤</mml:mo></mml:msubsup></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><?xmltex \hack{$\egroup}?><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

          Here, again, all of the terms where <inline-formula><mml:math id="M565" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>≠</mml:mo><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> cancel. What remains is
similar to Eq. (<xref ref-type="disp-formula" rid="App1.Ch1.E18"/>), but slightly modified.

              <disp-formula id="App1.Ch1.E22" content-type="numbered"><mml:math id="M566" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msup><mml:mfenced close="]" open="["><mml:msub><mml:mi mathvariant="script">H</mml:mi><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">v</mml:mi></mml:mrow></mml:msub></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>≈</mml:mo><mml:mi mathvariant="bold">I</mml:mi><mml:mo>+</mml:mo><mml:munderover><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow><mml:mi>l</mml:mi></mml:munderover><mml:mfenced close=")" open="("><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:msub><mml:msubsup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">ν</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mo>⊤</mml:mo></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        After a left-side multiplication by <inline-formula><mml:math id="M567" display="inline"><mml:mi mathvariant="bold">U</mml:mi></mml:math></inline-formula> and a right-side
multiplication by <inline-formula><mml:math id="M568" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">U</mml:mi><mml:mo>⊤</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, we achieve the desired low rank update
to <inline-formula><mml:math id="M569" display="inline"><mml:mi mathvariant="bold">B</mml:mi></mml:math></inline-formula> found in Eq. (<xref ref-type="disp-formula" rid="Ch1.E23"/>).</p><?xmltex \hack{\clearpage}?>
</app>
  </app-group><notes notes-type="authorcontribution">

      <p>J. J. Guerrette developed the software and ran simulations
following the guidance of the principal investigator, D. K. Henze. Both
authors contributed to writing and analysis.</p>
  </notes><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p>Thank you to two anonymous referees for their constructive and helpful
comments that strengthened this work. This research has been supported by a
grant from the US Environmental Protection Agency's Science to Achieve
Results (STAR) program. Although the research described in the article has
been funded wholly or in part by the US Environmental Protection Agency's
STAR program through grant R835037, it has not been subjected to any EPA
review and therefore does not necessarily reflect the views of the agency,
and no official endorsement should be inferred. In addition, this paper is a
result of research funded by the National Oceanic and Atmospheric
Administration's Earth System Research Laboratory as part of the Fire
Influence on Regional and Global Environments Experiment (FIREX) through the
grant NOAA NA16OAR4310113. We are thankful for the ARCTAS mission, which was
supported by NASA. We thank Y. Kondo for making the SP2 observations
available through the NASA LaRC Airborne Science Data for Atmospheric
Composition database. We acknowledge the use of FIRMS data from the Land
Atmosphere Near-real time Capability for EOS (LANCE) system operated by the
NASA/GSFC/Earth Science Data and Information System (ESDIS) with funding
provided by NASA/HQ.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: F.
Yu<?xmltex \hack{\newline}?> Reviewed by: three anonymous referees</p></ack><ref-list>
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    <!--<article-title-html>Four-dimensional variational inversion of black carbon emissions during ARCTAS-CARB with WRFDA-Chem</article-title-html>
<abstract-html><p class="p">Biomass burning emissions of atmospheric aerosols, including black carbon,
are growing due to increased global drought, and comprise a large source of
uncertainty in regional climate and air quality studies. We develop and apply
new incremental four-dimensional variational (4D-Var) capabilities in
WRFDA-Chem to find optimal spatially and temporally distributed biomass
burning (BB) and anthropogenic black carbon (BC) aerosol emissions. The
constraints are provided by aircraft BC concentrations from the Arctic
Research of the Composition of the Troposphere from Aircraft and Satellites
in collaboration with the California Air Resources Board (ARCTAS-CARB) field
campaign and surface BC concentrations from the Interagency Monitoring of
PROtected Visual Environment (IMPROVE) network on 22, 23, and 24 June 2008.
We consider three BB inventories, including Fire INventory from NCAR (FINN)
v1.0 and v1.5 and Quick Fire Emissions Database (QFED) v2.4r8. On 22 June,
aircraft observations are able to reduce the spread between a customized QFED
inventory and FINNv1.0 from a factor of 3. 5 ( × 3. 5) to only
 × 2. 1. On 23 and 24 June, the spread is reduced from  × 3. 4 to
 × 1. 4. The posterior corrections to emissions are heterogeneous in time
and space, and exhibit similar spatial patterns of sign for both inventories.
The posterior diurnal BB patterns indicate that multiple daily emission peaks
might be warranted in specific regions of California. The US EPA's 2005
National Emissions Inventory (NEI05) is used as the anthropogenic prior. On
23 and 24 June, the coastal California posterior is reduced by  × 2,
where highway sources dominate, while inland sources are increased near
Barstow by  × 5. Relative BB emission variances are reduced from the
prior by up to 35 % in grid cells close to aircraft flight paths and by
up to 60 % for fires near surface measurements. Anthropogenic variance
reduction is as high as 40 % and is similarly limited to sources close to
observations. We find that the 22 June aircraft observations are able to
constrain approximately 14 degrees of freedom of signal (DOF), while surface
and aircraft observations together on 23/24 June constrain 23 DOF. Improving
hourly- to daily-scale concentration predictions of BC and other aerosols
during BB events will require more comprehensive and/or targeted measurements
and a more complete accounting of sources of error besides the emissions.</p></abstract-html>
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