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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">ACP</journal-id><journal-title-group>
    <journal-title>Atmospheric Chemistry and Physics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1680-7324</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-17-14519-2017</article-id><title-group><article-title>Cloud characteristics, thermodynamic controls and radiative impacts during
the Observations and Modeling of the Green <?xmltex \hack{\newline}?>Ocean Amazon (GoAmazon2014/5)
experiment</article-title>
      </title-group><?xmltex \runningtitle{Cloud characteristics, thermodynamic controls and radiative impacts}?><?xmltex \runningauthor{S.~E.~Giangrande et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Giangrande</surname><given-names>Scott E.</given-names></name>
          <email>sgrande@bnl.gov</email>
        <ext-link>https://orcid.org/0000-0002-8119-8199</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Feng</surname><given-names>Zhe</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-7540-9017</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Jensen</surname><given-names>Michael P.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4731-6814</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Comstock</surname><given-names>Jennifer M.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-4183-7355</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Johnson</surname><given-names>Karen L.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Toto</surname><given-names>Tami</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Wang</surname><given-names>Meng</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Burleyson</surname><given-names>Casey</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6218-9361</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Bharadwaj</surname><given-names>Nitin</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Mei</surname><given-names>Fan</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4285-2749</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Machado</surname><given-names>Luiz A. T.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8243-1706</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Manzi</surname><given-names>Antonio O.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Xie</surname><given-names>Shaocheng</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8931-5145</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Tang</surname><given-names>Shuaiqi</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8946-9205</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff6">
          <name><surname>Silva Dias</surname><given-names>Maria Assuncao F.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-8591-6090</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff7">
          <name><surname>de Souza</surname><given-names>Rodrigo A. F</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff8">
          <name><surname>Schumacher</surname><given-names>Courtney</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff9">
          <name><surname>Martin</surname><given-names>Scot T.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Environmental and Climate Sciences Department, Brookhaven National
Laboratory, Upton, NY, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Pacific Northwest National Laboratory, Richland, WA, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>National Institute for Space Research, São José dos Campos,
Brazil</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>National Institute of Amazonian Research, Manaus, Amazonas, Brazil</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Lawrence Livermore National Laboratory, Livermore, CA, USA</institution>
        </aff>
        <aff id="aff6"><label>6</label><institution>University of São Paulo, São Paulo, Department of Atmospheric Sciences, Brazil</institution>
        </aff>
        <aff id="aff7"><label>7</label><institution>State University of Amazonas (UEA), Meteorology, Manaus, Brazil</institution>
        </aff>
        <aff id="aff8"><label>8</label><institution>Texas A&amp;M University, College Station, Department of Atmospheric Sciences, TX, USA</institution>
        </aff>
        <aff id="aff9"><label>9</label><institution>Harvard University, Cambridge, School of Engineering and Applied Sciences and Department <?xmltex \hack{\newline}?>of Earth and Planetary Sciences, MA, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Scott E. Giangrande (sgrande@bnl.gov)</corresp></author-notes><pub-date><day>6</day><month>December</month><year>2017</year></pub-date>
      
      <volume>17</volume>
      <issue>23</issue>
      <fpage>14519</fpage><lpage>14541</lpage>
      <history>
        <date date-type="received"><day>12</day><month>May</month><year>2017</year></date>
           <date date-type="rev-request"><day>24</day><month>May</month><year>2017</year></date>
           <date date-type="rev-recd"><day>30</day><month>August</month><year>2017</year></date>
           <date date-type="accepted"><day>11</day><month>September</month><year>2017</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>
      <abstract>
    <p id="d1e293">Routine cloud, precipitation and thermodynamic observations
collected by the Atmospheric Radiation Measurement (ARM) Mobile Facility
(AMF) and Aerial Facility (AAF) during the 2-year US Department of Energy
(DOE) ARM Observations and Modeling of the Green Ocean Amazon
(GoAmazon2014/5) campaign are summarized. These observations quantify the
diurnal to large-scale thermodynamic regime controls on the clouds and
precipitation over the undersampled, climatically important Amazon basin
region. The extended ground deployment of cloud-profiling instrumentation
enabled a unique look at multiple cloud regimes at high temporal and
vertical resolution. This longer-term ground deployment, coupled with two
short-term aircraft intensive observing periods, allowed new opportunities to
better characterize cloud and thermodynamic observational constraints as
well as cloud radiative impacts for modeling efforts within typical Amazon
“wet” and “dry” seasons.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e303">The simulation of clouds and the representation of cloud processes and
associated feedbacks in global climate models (GCMs) remains the largest
source of uncertainty in predictions of climate change (Klein and Del Genio, 2006;
Del Genio, 2012). Collecting routine cloud observations to serve as
constraints for the improvement of cloud parameterizations represents an
ongoing challenge (e.g., Mather and Voyles, 2013), but one necessary to
overcome deficiencies in GCM cloud characterizations. Compounding this
challenge, cloud–climate feedbacks operate over extended spatiotemporal
scales, while cloud behaviors vary significantly according to the regionally
varying forcing conditions (e.g., Rossow et al., 2005). There is additional
demand to observe and model cloud processes and feedbacks across many
undersampled regions, including climatically important tropical locations
where it is often difficult to deploy ground equipment.</p>
      <p id="d1e306">As introduced by Martin et al. (2016, 2017), the Observations and Modeling
of the Green Ocean Amazon (GoAmazon2014/5) experiment was motivated by
demands to gain a better understanding of aerosol, cloud and precipitation
interactions on climate and the global circulation. The Amazon forest is the
largest tropical rain forest on the planet, featuring prolific and diverse
cloud conditions that span “wet” and “dry” precipitation regimes. These
regimes and associated variations in cloud types, coverage and intensity
from sub-daily to seasonal scales, are interconnected to large-scale shifts
in the thermodynamic forcing and coupled local cloud-scale feedbacks (e.g.,
Fu et al., 1999; Machado et al., 2004; Li and Fu, 2004; Fu and Li, 2004;
Misra, 2008). The inability of GCMs to adequately represent clouds over such a
complex and expansive tropical area sets apart GoAmazon2014/5 as an
important asset for the improvement of GCM cloud parameterizations and
simulations of possible climate change (e.g., Williams et al., 2002; Richter
and Xie, 2008; Nobre et al., 2009; Yin et al., 2013).</p>
      <p id="d1e309">One key component for cloud life cycle and process studies during
GoAmazon2014/5 was the 2-year deployment of the Atmospheric Radiation
Measurement (ARM; Stokes and Schwartz, 1994; Ackerman and Stokes, 2003) Mobile
Facility (AMF; Miller et al., 2016) 70 km to the west of Manaus in central
Amazonia, Brazil (3<inline-formula><mml:math id="M1" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>12<inline-formula><mml:math id="M2" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula>46.70<inline-formula><mml:math id="M3" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>′</mml:mo><mml:mo>′</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> S, 60<inline-formula><mml:math id="M4" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>35<inline-formula><mml:math id="M5" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula>53.0<inline-formula><mml:math id="M6" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>′</mml:mo><mml:mo>′</mml:mo></mml:mrow></mml:msup></mml:math></inline-formula> W). This location
was chosen to sample the extremes of the local pristine atmosphere, as well
as the effects of the Manaus, Brazil, pollution plume. The AMF was equipped
to capture a continuous record of column cloud and precipitation
characteristics from multi-sensor profiling instrumentation, while routine
surface meteorology and flux measurements along with balloon-borne
radiosonde measurements provided information on the local thermodynamic
state (e.g., Kollias et al., 2009; Xie et al., 2015; Tang et al., 2016).
Deploying such an extended, comprehensive cloud instrumentation suite of
this sort is unique to Amazon basin studies and rare within global
climate–cloud interaction studies overall, particularly in the tropics. From
this dataset, longer-term composites and statistical perspectives on diurnal
to seasonal cloud variability (e.g., cloud development, morphological
transitions, precipitation occurrence and radiative properties) are
possible.</p>
      <p id="d1e373">The long-term, ground-based measurements during GoAmazon2014/5 were
complemented with aircraft-based measurements using the US Department of
Energy (DOE) ARM Gulfstream-1
(G1) aircraft (ARM Areal Facility (AAF), e.g., Schmid et al., 2016). The
G1 was equipped with instruments for measuring clouds, aerosol, chemistry
and atmospheric state (e.g., Martin et al., 2017), which provide additional
aerosol and cloud microphysical information that is not readily measured at
the surface. These data help with the interpretation of ground-based
measurements, while the ground measurements assist when determining the
representativeness of these aircraft data.</p>
      <p id="d1e377">This GoAmazon2014/5 cloud overview serves as a focused cloud study to
complement the campaign overview effort found in Martin et al. (2017) and is
outlined as follows. Section 2 introduces the AMF instrumentation and
methods used for cloud classification and composite cloud properties. A
2-year summary of the environmental conditions and cloud observations in
terms of fractional cloud coverages is presented in Sect. 3. These
observations are segregated according to cloud types associated with
large-scale Amazon wet and dry precipitation regimes. Section 4 details the
observations for individual cloud types and their relative impact on surface
energy and fluxes. This analysis includes additional relationships between
campaign aircraft in-cloud observations when available. A brief discussion
and summary of the initial cloud insights from the GoAmazon2014/5 deployment
are found in Sect. 5.l</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p id="d1e383">Cloud-type definitions based on cloud boundaries and thickness.
Definitions are slightly modified from Burleyson et al. (2015) (their
Table 2) and McFarlane et al. (2013) (their Table 3).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Cloud type</oasis:entry>  
         <oasis:entry colname="col2">Cloud-base height</oasis:entry>  
         <oasis:entry colname="col3">Cloud-top height</oasis:entry>  
         <oasis:entry colname="col4">Cloud thickness</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Shallow</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M7" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 3 km</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M8" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 3 km</oasis:entry>  
         <oasis:entry colname="col4">No restriction</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Congestus</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M9" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 3 km</oasis:entry>  
         <oasis:entry colname="col3">3–8 km</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Deep convection</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M11" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 3 km</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M12" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 8 km</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Altocumulus</oasis:entry>  
         <oasis:entry colname="col2">3–8 km</oasis:entry>  
         <oasis:entry colname="col3">3–8 km</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M14" display="inline"><mml:mi mathvariant="italic">&lt;</mml:mi></mml:math></inline-formula> 1.5 km</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Altostratus</oasis:entry>  
         <oasis:entry colname="col2">3–8 km</oasis:entry>  
         <oasis:entry colname="col3">3–8 km</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Cirrostratus/anvil</oasis:entry>  
         <oasis:entry colname="col2">3–8 km</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M16" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 8 km</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mo>≥</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula> km</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Cirrus</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M18" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 8 km</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M19" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 8 km</oasis:entry>  
         <oasis:entry colname="col4">No restriction</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p id="d1e620">Frequencies of cloud occurrence in the column and associated
conditional shortwave (SW) transmissivity (SW trans), conditional SW cloud radiative
effect (SW CRE) and conditional longwave (LW) cloud radiative effect (LW CRE) for each
cloud type. All values are averaged across the diurnal cycle. For SW CRE,
only daytime hours are included. SW transmissivity values in parentheses are
standard deviations (SDs).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">Mean</oasis:entry>  
         <oasis:entry colname="col4">Mean frequency</oasis:entry>  
         <oasis:entry colname="col5">SW trans</oasis:entry>  
         <oasis:entry colname="col6">SW CRE</oasis:entry>  
         <oasis:entry colname="col7">LW CRE</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">frequency</oasis:entry>  
         <oasis:entry colname="col4">as the lowest</oasis:entry>  
         <oasis:entry colname="col5">(SD)</oasis:entry>  
         <oasis:entry colname="col6">(Wm<inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">(Wm<inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">of cloud</oasis:entry>  
         <oasis:entry colname="col4">cloud in</oasis:entry>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">(%)</oasis:entry>  
         <oasis:entry colname="col4">column (%)</oasis:entry>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6"/>  
         <oasis:entry colname="col7"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Low</oasis:entry>  
         <oasis:entry colname="col2">All data</oasis:entry>  
         <oasis:entry colname="col3">22.1</oasis:entry>  
         <oasis:entry colname="col4">22.1</oasis:entry>  
         <oasis:entry colname="col5">0.64 (0.28)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M22" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>177.5</oasis:entry>  
         <oasis:entry colname="col7">17.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Wet seasons</oasis:entry>  
         <oasis:entry colname="col3">27.9</oasis:entry>  
         <oasis:entry colname="col4">27.9</oasis:entry>  
         <oasis:entry colname="col5">0.60 (0.28)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M23" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>210.8</oasis:entry>  
         <oasis:entry colname="col7">18.3</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Dry seasons</oasis:entry>  
         <oasis:entry colname="col3">16.8</oasis:entry>  
         <oasis:entry colname="col4">16.8</oasis:entry>  
         <oasis:entry colname="col5">0.71 (0.27)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M24" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>132.5</oasis:entry>  
         <oasis:entry colname="col7">15.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Congestus</oasis:entry>  
         <oasis:entry colname="col2">All data</oasis:entry>  
         <oasis:entry colname="col3">5.7</oasis:entry>  
         <oasis:entry colname="col4">4.8</oasis:entry>  
         <oasis:entry colname="col5">0.36 (0.25)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M25" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>326.6</oasis:entry>  
         <oasis:entry colname="col7">26.3</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Wet seasons</oasis:entry>  
         <oasis:entry colname="col3">8.9</oasis:entry>  
         <oasis:entry colname="col4">7.5</oasis:entry>  
         <oasis:entry colname="col5">0.34 (0.23)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M26" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>346.3</oasis:entry>  
         <oasis:entry colname="col7">25.5</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Dry seasons</oasis:entry>  
         <oasis:entry colname="col3">2.8</oasis:entry>  
         <oasis:entry colname="col4">2.4</oasis:entry>  
         <oasis:entry colname="col5">0.40 (0.29)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M27" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>284.1</oasis:entry>  
         <oasis:entry colname="col7">26.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Deep Conv.</oasis:entry>  
         <oasis:entry colname="col2">All data</oasis:entry>  
         <oasis:entry colname="col3">5.2</oasis:entry>  
         <oasis:entry colname="col4">4.9</oasis:entry>  
         <oasis:entry colname="col5">0.17 (0.15)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M28" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>425.9</oasis:entry>  
         <oasis:entry colname="col7">28.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Wet seasons</oasis:entry>  
         <oasis:entry colname="col3">9.0</oasis:entry>  
         <oasis:entry colname="col4">8.4</oasis:entry>  
         <oasis:entry colname="col5">0.18 (0.15)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M29" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>429.3</oasis:entry>  
         <oasis:entry colname="col7">27.0</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Dry seasons</oasis:entry>  
         <oasis:entry colname="col3">1.5</oasis:entry>  
         <oasis:entry colname="col4">1.4</oasis:entry>  
         <oasis:entry colname="col5">0.17 (0.16)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M30" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>487.6</oasis:entry>  
         <oasis:entry colname="col7">33.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Altocumulus</oasis:entry>  
         <oasis:entry colname="col2">All data</oasis:entry>  
         <oasis:entry colname="col3">19.6</oasis:entry>  
         <oasis:entry colname="col4">13.6</oasis:entry>  
         <oasis:entry colname="col5">0.73 (0.30)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M31" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>131.8</oasis:entry>  
         <oasis:entry colname="col7">10.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Wet seasons</oasis:entry>  
         <oasis:entry colname="col3">25.3</oasis:entry>  
         <oasis:entry colname="col4">16.0</oasis:entry>  
         <oasis:entry colname="col5">0.69 (0.30)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M32" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>153.4</oasis:entry>  
         <oasis:entry colname="col7">10.1</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Dry seasons</oasis:entry>  
         <oasis:entry colname="col3">14.9</oasis:entry>  
         <oasis:entry colname="col4">11.6</oasis:entry>  
         <oasis:entry colname="col5">0.79 (0.29)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M33" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>102.3</oasis:entry>  
         <oasis:entry colname="col7">8.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Altostratus</oasis:entry>  
         <oasis:entry colname="col2">All data</oasis:entry>  
         <oasis:entry colname="col3">1.9</oasis:entry>  
         <oasis:entry colname="col4">1.0</oasis:entry>  
         <oasis:entry colname="col5">0.52 (0.29)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M34" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>233.3</oasis:entry>  
         <oasis:entry colname="col7">15.9</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Wet seasons</oasis:entry>  
         <oasis:entry colname="col3">3.1</oasis:entry>  
         <oasis:entry colname="col4">1.5</oasis:entry>  
         <oasis:entry colname="col5">0.47 (0.25)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M35" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>252.0</oasis:entry>  
         <oasis:entry colname="col7">14.9</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Dry seasons</oasis:entry>  
         <oasis:entry colname="col3">0.8</oasis:entry>  
         <oasis:entry colname="col4">0.4</oasis:entry>  
         <oasis:entry colname="col5">0.57 (0.32)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M36" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>161.1</oasis:entry>  
         <oasis:entry colname="col7">16.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Cirrostratus</oasis:entry>  
         <oasis:entry colname="col2">All data</oasis:entry>  
         <oasis:entry colname="col3">7.6</oasis:entry>  
         <oasis:entry colname="col4">4.2</oasis:entry>  
         <oasis:entry colname="col5">0.50 (0.31)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M37" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>243.8</oasis:entry>  
         <oasis:entry colname="col7">11.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Wet seasons</oasis:entry>  
         <oasis:entry colname="col3">10.3</oasis:entry>  
         <oasis:entry colname="col4">4.9</oasis:entry>  
         <oasis:entry colname="col5">0.44 (0.25)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M38" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>296.9</oasis:entry>  
         <oasis:entry colname="col7">12.4</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Dry seasons</oasis:entry>  
         <oasis:entry colname="col3">4.2</oasis:entry>  
         <oasis:entry colname="col4">2.6</oasis:entry>  
         <oasis:entry colname="col5">0.61 (0.36)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M39" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>222.8</oasis:entry>  
         <oasis:entry colname="col7">10.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Cirrus</oasis:entry>  
         <oasis:entry colname="col2">All data</oasis:entry>  
         <oasis:entry colname="col3">29.7</oasis:entry>  
         <oasis:entry colname="col4">17.2</oasis:entry>  
         <oasis:entry colname="col5">0.79 (0.26)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M40" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>100.3</oasis:entry>  
         <oasis:entry colname="col7">3.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Wet seasons</oasis:entry>  
         <oasis:entry colname="col3">30.4</oasis:entry>  
         <oasis:entry colname="col4">13.4</oasis:entry>  
         <oasis:entry colname="col5">0.74 (0.28)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M41" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>121.2</oasis:entry>  
         <oasis:entry colname="col7">3.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Dry seasons</oasis:entry>  
         <oasis:entry colname="col3">24.9</oasis:entry>  
         <oasis:entry colname="col4">18.0</oasis:entry>  
         <oasis:entry colname="col5">0.85 (0.23)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M42" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>81.6</oasis:entry>  
         <oasis:entry colname="col7">2.3</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2">
  <title>ARM mobile facility cloud observations</title>
      <p id="d1e1409">The AMF was deployed in Manacapuru, to the west of Manaus in central
Amazonia, Brazil (Fig. 1, herein “T3” site; Martin et al., 2017). Cloud
observations were obtained near continuously over a period from February
2014 to December 2015. The Amazon region surrounding T3 is often
identified as the “green ocean”, in reference to its unique atmospheric
conditions that exhibit tropical and continental cloud characteristics
(e.g., Williams et al., 2002). The T3 site is situated nearby the
intersection of the large Amazon (Rio Solimões) and Rio Negro rivers
(Fig. 1), a region of abundant moisture (humidity). As a consequence, T3 and
the Manaus region may experience increased cloudiness and unique
precipitation cycles as compared to the conditions over the larger Amazon
basin (e.g., Oliveira and Fitzjarrald, 1993; Silva Dias et al., 2004; Romatschke and Houze, 2010; Dos Santos et al., 2014). Collow and Miller (2016)
recently showed that the presence of the nearby rivers contributed to
spatial variability in the regional radiation budgets around the AMF site.
Recent GoAmazon2014/5 work has found a robust relationship between
column-integrated water vapor and precipitation over the Amazon (Schiro et
al., 2016). Seasonal thermodynamical shifts, as well as additional
large-scale sea breeze front-type intrusions into the basin (e.g., Cohen et
al., 1995; Alcântara et al., 2011), promote additional cloud life cycle
and diurnal cycle of precipitation variability (e.g., Burleyson et al., 2016; Saraiva et al., 2016). Readers are also directed to complementary
GoAmazon2014/5 studies on the large-scale environmental controls on clouds,
cloud transitions and precipitation found in Ghate and Kollias (2016), Tang
et al. (2016), Collow et al. (2016) and Zhuang et al. (2017). Our analysis
focuses on the T3 site that captured a wide range of shallow to deep cloud
conditions, sampled and categorized using multi-sensor AMF methods detailed
in this section. Larger-scale forcing datasets (including advective
tendencies and vertical velocities) over this region were also supported by
domain precipitation estimates available from the System for the Protection
of Amazonia (SIPAM) S-band radar operated at the Ponta Pelada airport
(T1; Fig. 1).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e1414">Location of the GoAmazon2014/5 key deployment sites and associated
terrain elevation (shaded). The primary ARM AMF facilities were located at
the T3 location. Range rings indicate distances from the SIPAM radar
location near T1. The 110 km range ring is the range associated with the ARM
continuous forcing dataset domain.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f01.pdf"/>

      </fig>

      <p id="d1e1423"><?xmltex \hack{\newpage}?>We characterize cloud and precipitation properties according to seasonal and
diurnal cycles that separate the observed cloud characteristics between
relatively “wet” (herein, December through April) and “dry” (herein, June
through September) season behaviors. While transitional months (May,
October and November) are not an emphasis of this study, these months
contain several intense (e.g., updraft strength and rainfall rates) deep
convective events in the GoAmazon2014/5 record. Thermodynamic profiling
(radiosonde) and environmental forcing datasets as sampled over the T3
location are summarized in Sect. 2.1. To better anchor cloud properties
within these wet and dry regimes, aircraft flight operations during
GoAmazon2014/5 prioritized two intensive operating periods (IOPs: 1 February–31 March 2014 and 15 August–15 October 2014) as introduced in Sect. 2.2.</p>
      <p id="d1e1427">Traditionally, cloud fraction (CF) observations are of high interest within
the GCM community and for high-resolution climate model evaluation (e.g.,
Bedacht et al., 2007; Wilkinson et al., 2008). Cloud breakdowns within our
study focus on the diurnal to seasonal controls on these CF estimates. This
is accomplished by segregating CF properties according to the results of a
cloud-type classification algorithm. The multi-sensor approach and cloud
classification methods are described in Sect. 2.3 and 2.4. Note that the
interpretation of CF estimates and 1-D column CF estimate representativeness
is often nontrivial (e.g., Wu et al., 2014). This study defines CF as the
fraction of observations (height-resolved or over the entire column) within
an hour for which the combined profiling sensors identify clouds overhead.
In this study, cloud fraction and cloud frequency are used interchangeably.</p>
<sec id="Ch1.S2.SS1">
  <title>Radiosonde, surface meteorology and large-scale forcing dataset
overview</title>
      <p id="d1e1436">During the campaign, radiosondes were launched over T3 at regular 6 h
intervals (01:30, 07:30, 13:30 and 19:30 LT, Vaisala RS-92 radiosondes; ARM, 1993). For the IOPs, one additional radiosonde was launched at
10:30 LT to enhance diurnal coverage. Basic thermodynamic processing was performed
following Jensen et al. (2015) to estimate convective forcing parameters
such as the lifting condensation level (LCL), mixed-layer height (MLH),
convective available potential energy (CAPE) and convective inhibition
(CIN). For each of these parameters, surface parcels are defined by the
level of the maximum virtual temperature in the lowest kilometer. This
represents the most buoyant parcel in the boundary layer and maximizes the
calculated CAPE (thus, our reported values are comparable to “most
unstable” CAPE or MUCAPE). The MLH is calculated using the definition of Liu and Lang (2010) that determines the MLH from a combination of the gradient of
potential temperature and the vertical wind shear using criteria based on
the stability of the boundary layer and the presence of a low-level jet.
Surface radiative flux estimates for this study follow the radiative flux
analysis methods of Long and Ackerman (2000) and Long and Turner (2008). The
clear-sky radiative flux estimates are produced by employing an empirical
function fitting approach during observed clear-sky periods. The fitted
coefficients from these clear-sky intervals are used to interpolate over
cloudy periods, providing a continuous estimate of clear-sky irradiances and
quality-controlled cloudy-sky fluxes. Detailed analyses of cloud radiative
effects are located in Sect. 4.</p>
      <p id="d1e1439">Figure 2 presents the cumulative time series for the 2-year
GoAmazon2014/15 dataset in terms of average daily profile values for basic
cloud, precipitation, thermodynamical and dynamical observations from
multi-sensor ground instruments at the T3 site. These efforts complement
previous papers on seasonal variability for cloud conditions over the
larger Amazon basin (e.g., Machado et al., 2004). We observe clear shifts in
several quantities associated with the Amazon wet and dry seasons. Our
ranges for wet and dry season months, as well as the IOPs, are shown
in Fig. 2 as a reference to the appropriateness for those windows compared
to the larger-scale conditions. The more pronounced shifts during the wet
season include increased CF in the mid-to-upper troposphere (between 3 and 10 km; Fig. 2a), higher precipitation rates (over these daily integrations) and
precipitable water (PW; Fig. 2b), as well as the buildup of relative
humidity (RH) profiles through the middle levels (Fig. 2d). Previous studies
suggest that CAPE, CIN and zonal/meridional winds (Fig. 2c, e and f) from
radiosondes may also illustrate large-scale thermodynamical changes and
moisture transport associated with wet, dry and transitional periods (e.g.,
Li and Fu, 2004; Fu and Li, 2004). Radiosonde daily maximum values indicate
only small seasonal changes in CAPE and CIN, although we observe that the
transitional periods between the dry and wet seasons promote maximum
relative CAPE trends coupled with relatively lower CIN and heightened
moisture. These are the primary ingredients that promote more frequent and
strong convection, provided convection can be triggered (e.g., Machado et
al., 2004). Although areal coverage of deeper convection is generally the
largest during the wet season, recent profiler-based studies suggest the
strongest storms (in terms of upward vertical air motion) were often
observed towards the end of the dry season and into the transitional period
(e.g., Giangrande et al., 2016; Nunes et al., 2016).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p id="d1e1444">Time series of <bold>(a)</bold> cloud frequency from the merged WACR-ARSCL-RWP
dataset, <bold>(b)</bold> column precipitable water (purple; thick line is the 30-day running
mean) and surface precipitation (dark blue bars), sounding measurements of
<bold>(c)</bold> daily maximum CAPE (red), daily minimum CIN (blue), two horizontal lines
are their respective mean values, <bold>(d)</bold> relative humidity (with respect to
liquid), <bold>(e)</bold> zonal wind and <bold>(f)</bold> meridional wind. The data shown are daily
average values. Gray fillings in panels <bold>(a, b)</bold> are periods with missing cloud or
precipitation data, respectively. “Wet” and “dry” seasons in this study are
denoted with blue and orange bars in panels <bold>(b, f)</bold>; IOP1 and IOP2 periods are
denoted by the vertical dash lines.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f02.pdf"/>

        </fig>

      <p id="d1e1478">The diurnal variation of atmospheric state is illustrated in Fig. 3 and
shows the evolutions for the mean and standard deviation of (a) CAPE, (b)
CIN, (c) LCL and (d) MLH separated into dry (red bars) and wet (blue bars)
components (e.g., Betts et al., 2002). CAPE increases after sunrise, reaching
a maximum near midday, whereas CIN is maximum (largest negative value)
overnight and decreases during the day. These behaviors are consistent with
development of convection breaking the capping inversion and consuming CAPE.
Both CAPE and CIN show a stronger diurnal cycle during the dry season
compared to the wet season. The mean LCL increases by approximately
600–800 m from sunrise to the afternoon with larger magnitudes and range during the
dry season. The mean MLH also increases by approximately 1 km from sunrise
through the afternoon during the wet season, while during the dry season the
increase is about 1.5 km. This increase in MLH is consistent with daytime
solar heating. Separating the diurnal cycle into dry (red bars) and wet
(blue bars) season components indicates slightly stronger diurnal cycle
signatures in CAPE, increased CIN (e.g., larger negative values) and higher
MLH for the dry season (similar to measurements obtained in the southwest Amazon by
Fisch et al., 2004), with a suppressed diurnal cycle in LCL height.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p id="d1e1484">Diurnal cycles (mean and standard deviation) for radiosonde-based
thermodynamic quantities of <bold>(a)</bold> CAPE, <bold>(b)</bold> CIN, <bold>(c)</bold> LCL height and <bold>(d)</bold> MLH
for wet (blue) and dry (red) season breakdowns.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f03.png"/>

        </fig>

      <p id="d1e1505">To better inform the observed cloud system variations over the ARM T3 site
from the large-scale environmental condition perspective, Fig. 4 plots the
diurnal cycle of the large-scale vertical motion (omega), total advection of
moisture and relative humidity. The total advection of moisture is the sum
of the horizontal and the vertical advection:
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math id="M43" display="block"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">q</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">adv</mml:mi><mml:mi mathvariant="normal">_</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:mrow><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>V</mml:mi><mml:mi>h</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>h</mml:mi></mml:msub><mml:mi>q</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>q</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>p</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          The total advection can be interpreted as 3-D moisture convergence. For the
GoAmazon2014/5 period, the vertical component dominated the total moisture
advection (not shown). These large-scale fields are derived from the ECMWF
analysis outputs over the entire field campaign using a constrained
variational analysis method of Zhang and Lin (1997). The upper-level state
variables (wind, temperature, moisture) from ECMWF are adjusted to conserve
column-integrated mass, moisture and energy. Surface rainfall rate from the
SIPAM radar is used as a major constraint. Additional details on these
large-scale fields for the GoAmazon2014/5 deployment can be found in Tang et
al. (2016). This variational analysis is performed at 3-hourly intervals at
25 hPa vertical resolution over a domain of about 110 km in radius, with the
center located at the T1 site (Fig. 1).</p>
      <p id="d1e1561">The omega field shows strong upward air motion in the middle and upper
troposphere during the mid-to-late afternoon (Fig. 4a). The evening and
early morning hours exhibit upward air motion confined below 3–4 km due to
lower-level convergence and middle-level divergence (not shown), likely
corresponding to the congestus clouds. Above that level, downward air motion
is dominant. This downward motion is most pronounced between 06:00 and
09:00 LT. After sunrise, we observe low-level weak ascending motions and positive
advection of moisture (Fig. 4d). Between 4 and 8 km in the RH field, we observe
dry middle tropospheric conditions and relatively wetter conditions near the
tropopause (Fig. 4g). Similar structures in all fields are found across wet
and dry season breakdowns; however, middle- and upper-level descending
motions during the evening and early morning hours are much stronger during
the dry season, suppressing convection during those hours. In addition, the
ascending motion between noon and late afternoon is much weaker in the dry
season compared to the wet season. The dry season also exhibits reduced
low-level positive moisture advection and a much dryer lower and middle
atmosphere.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>The AAF aircraft dataset</title>
      <p id="d1e1570">The DOE AAF G1 aircraft participated in two IOPs that coincided with the
AMF deployment. Airborne measurements were conducted during 22 February–23 March 2014
and 6 September–4 October 2014, representative of the wet and dry
seasons, respectively. The G1 flight patterns were designed to sample
shallow and growing cumulus convective clouds that formed downwind from
Manaus to examine the evolution of urban pollution and its effect on cloud
and precipitation properties (Martin et al., 2017). Typical flights consisted
of a series of level legs flown just below cloud base, just above cloud
base and higher in growing cumulus clouds, including legs over the T3
ground site. In total, 16 and 19 flights in warm cumulus clouds
were included in the wet and dry seasons, respectively.</p>
      <p id="d1e1573">The G1 payload was designed to measure the full spectrum of aerosol size
from 0.015 to 3 <inline-formula><mml:math id="M44" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m and cloud particle sizes from 2 <inline-formula><mml:math id="M45" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m to
1.92 cm. For this study, three cloud particle distribution probes are
combined to create the full drop-size distribution (DSD) depictions
presented in Sect. 4. The Droplet Measurements Technologies (DMT) cloud droplet
probe (CDP; 2–50 <inline-formula><mml:math id="M46" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m) is combined with the Spec Inc. two-dimensional
stereo probe (2-DS; 10 <inline-formula><mml:math id="M47" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m–3 mm) between 20 and 50 <inline-formula><mml:math id="M48" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m by
averaging the overlapping bins. The Spec Inc. high-volume precipitation
spectrometer (HVPS; 150 <inline-formula><mml:math id="M49" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m–1.92 cm) is used for droplets larger than
500 <inline-formula><mml:math id="M50" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. Cloud droplet distributions are combined by averaging the DSD
for each instrument separately over these flight periods. This was done for
in-cloud conditions only. DSDs from the CDP are used for drops smaller than
20 <inline-formula><mml:math id="M51" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. The DSDs from the CDP and 2-DS are averaged between 20 and 50 <inline-formula><mml:math id="M52" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m,
2-DS DSDs are used between 50 and 500 <inline-formula><mml:math id="M53" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, and HVPS DSDs are
used for drops larger than 500 <inline-formula><mml:math id="M54" display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m. The 2-DS probe occasionally
contained artifacts known as “stuck bits”, i.e., when a photodiode becomes
continuously occulted due to optical contamination or electronic noise
(Lawson et al., 2006). Each flight was visually inspected for artifacts,
which were manually removed from the combined DSDs. Cloud condensation
nuclei (CCN) were measured with a dual-column system manufactured by DMT
(operated with a constant pressure inlet at 600 mbar), and liquid water
content (LWC) was measured using a multi-wire element probe (Science
Engineering Associates (SEA) water content meter WCM-2000) with wire sizes
the same as King and Johnson-Williams probes.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p id="d1e1656">Diurnal cycles of omega, total advection of moisture and relative
humidity (with respect to liquid) for the complete 2-year GoAmazon2014/15
campaign record <bold>(a, d, g)</bold>, as well as wet season <bold>(b, e, h)</bold> and dry season
<bold>(c, f, i)</bold> breakdowns.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS3">
  <title>Radar dataset and multi-sensor merging</title>
      <p id="d1e1680">The 95 GHz W-band ARM cloud radar (WACR) (e.g., ARM, 2005; Giangrande et al.,
2012) is the primary profiling instrument to characterize the cloud
conditions during GoAmazon2014/5. Cloud masking and designation products are
performed using the multi-sensor WACR preprocessing approach following
active remote sensing of clouds methodologies (ARSCL; Clothiaux et al., 2000;
Kollias et al., 2005, 2009) and additional quality-control refinements
following Kollias et al. (2014). These retrievals merge observations from
the WACR and a collocated laser ceilometer, micropulse lidar (MPL) and
microwave radiometer (MWR) to better identify cloud boundaries in the
vertical at high temporal (<inline-formula><mml:math id="M55" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 s) and vertical
(<inline-formula><mml:math id="M56" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 24 m) resolution.</p>
      <p id="d1e1697">There are several limitations when designating cloud boundaries and hourly
CF observations from vertically pointing cloud radars beyond the
capabilities of single radar platforms or ARSCL methods (e.g., Lamer and
Kollias, 2015; Oue et al., 2016). The primary limitation among these is that the WACR
experiences attenuation in rain that manifests as erroneously low or missing
cloud-top boundaries (e.g., Feng et al., 2009, 2014). To lessen these impacts
within this Amazonian deployment that favors frequent precipitating cumulus,
a collocated and well-calibrated 1290 MHz ultra-high frequency (UHF) radar wind profiler (RWP;
8<inline-formula><mml:math id="M57" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>  beamwidth, 200 m gate spacing, 6 s temporal resolution) was
co-gridded to improve cloud coverage through deeper precipitating clouds
(e.g., ARM, 2009; Giangrande et al., 2013, 2016). For this study, a
modification to the ARSCL cloud boundary designation is produced by merging
RWP profiles (operating in “precipitation” modes, as also described in
Tridon et al. (2013) during precipitation intervals following similar
ARSCL-type cloud profile processing (Feng et al., 2014). The substitution is
accomplished using collocated surface rain gauge datasets to help define
appropriate “precipitation periods”. These are defined as continuous time
periods when the surface rain rate from the gauge exceeds 1 mm h<inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.
During these intervals, if more than 10 % of the derived WACR first
echo-top heights associated with these precipitating clouds are found to be
500 m or more below the echo-top height as recorded by the RWP, a WACR
attenuation flag is assigned and the RWP profiles and boundaries are
inserted.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F5" specific-use="star"><caption><p id="d1e1723">Example from the merged WACR-ARSCL-RWP dataset for a 1 April 2014
event: <bold>(a)</bold> WACR reflectivity, <bold>(b)</bold> RWP reflectivity, <bold>(c)</bold> cloud-type
classification, <bold>(d)</bold> tipping bucket rain rate (black, 5 min increments)
and MWR retrieved liquid water path (green), <bold>(e)</bold> downward shortwave flux
and <bold>(f)</bold> downward longwave flux. The black dots in panels <bold>(a, b)</bold> reflect a
best estimate cloud-base height and ceilometer cloud-base height from the
WACR-ARSCL dataset. Magenta bars above panel <bold>(c)</bold> show periods when RWP data
were used to replace WACR data (green bars). The black lines in panels <bold>(e, f)</bold> reflect clear-sky flux estimates from the radiative flux analysis
product. The differences between clear-sky estimated fluxes and measured
fluxes (denoted between the arrows in panels <bold>(e, f)</bold>) are defined as cloud radiative
effects.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f05.pdf"/>

        </fig>

      <p id="d1e1763">Figure 5 illustrates an example of the composite cloud designation for the 1
April 2014 event. Earlier during this event, both the WACR (Fig. 5a) and RWP
(Fig. 5b) struggle to sample the thin and/or high cloud regions observed by
ARSCL (Fig. 5c). CF estimates in these regions benefit from the additional
ceilometer and MPL observations (not shown in Fig. 5) to detect clouds.
Congestus clouds, including those that have cloud tops at <inline-formula><mml:math id="M59" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 6 km,
are observed reasonably well by both radars. In these times, surface
precipitation is limited (Fig. 5d). A deep convective cloud system passes
over T3 between 15:00 and 19:00 UTC. Heavy precipitation (surface measured rain
rate &gt; 60 mm h<inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is associated with extinction of the WACR
signal, whereas the RWP is able to reconstruct cloud boundaries up to 13 km.
Since the RWP is sensitive only to precipitation-sized particles, these
methods will still underestimate the true cloud top. Additional
precipitation periods are also identified by red bars on top of Fig. 5c,
highlighting locations where the cloud boundary designation within
precipitation is improved over traditional ARSCL methods.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Cloud classification and radiative properties</title>
      <p id="d1e1794">A simple cloud-type classification is performed on the cloud boundary and
masking dataset from Sect. 2.3. This approach follows McFarlane et al. (2013) and Burleyson et al. (2015). These methods classify clouds into seven
categories according to the height of the cloud boundaries and cloud
thickness. The cloud categories include shallow, congestus, deep
convection, altocumulus, altostratus, cirrostratus/anvil and cirrus
(definitions summarized in Table 1). Figure 5c provides an example of the
cloud classifications for 1 April 2014. Cloud classification is used to
separate surface radiative properties among the different cloud types. To
accomplish this, the nearest cloud profile is matched to the 1 min surface
radiative flux data. As with Burleyson et al. (2015), the lowest cloud type
present in the column during that time is used to designate the shortwave
and longwave radiative flux measurements (Fig. 5e and f) for that cloud
type.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p id="d1e1799">Composite diurnal cycle cloud fraction profiles segregated
according to each of the seven cloud classification categories. White
contours start at 10 % and increments at 2 %. Maximum cloud fraction
values for shallow and cirrus clouds are marked in panel <bold>(a)</bold>. The
black line in panel <bold>(a)</bold> plots the averaged LCL height
estimated using surface measurements.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f06.pdf"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S3">
  <title>Profiling observations of clouds and precipitation during
GoAmazon2014/5</title>
      <p id="d1e1821">As highlighted in Fig. 2, thermodynamic and cloud properties from this
2-year Amazon dataset are diverse and sampled near continuously by the ARM
instrumentation to provide unique constraints towards model improvement.
First, T3 cloud observations will be summarized according to diurnal and
seasonal breakdowns that follow from large-scale shifts between wet and dry
Amazon precipitation regimes. Breakdowns of CF associated with each cloud
category defined in the previous section are located in Table 2 (a variation
of this Table is also found in Figs. 10 and 12). For composite CF summaries
presented in this section, we capitalize on the high temporal and vertical
resolution of the ARM instruments to partition CF according to hourly
profile estimates.</p>
      <p id="d1e1824">Measurable precipitation (&gt; 1 mm, daily) was frequent over the
T3 site during the campaign according to surface rain gauge observations (as
highlighted in Fig. 2b). In this dataset, 216 days recorded measurable
precipitation from multiple ARM gauge and radar sensors, with 80
additional days recording light/trace precipitation (&lt; 1 mm). The
total campaign precipitation over T3 was approximately 3000 mm. This total
T3 accumulation is representative of the regional SIPAM estimates reported
in Zhuang et al. (2017), accounting for uncertainty in radar-based rainfall
estimates, dataset gaps and discrepancies between point and spatial rainfall
estimates. However, this total campaign precipitation may be below normal
due to a late onset of the 2014–2015 rainy season and other factors
(e.g., Fig. 4 of Marengo et al., 2017, <inline-formula><mml:math id="M61" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2300 mm yr<inline-formula><mml:math id="M62" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>).
Using collocated RWP echo classification methodologies when available (as
described by Giangrande et al., 2016), it was possible to designate the
fractional precipitation associated with convective and stratiform regimes.
For this dataset, <inline-formula><mml:math id="M63" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 76 % of the accumulated precipitation
was associated with convective precipitation. For this definition, we note
that “deep convective” cloud regimes from our cloud classification are
associated with both convective precipitation in the convective cores that
pass over the site, as well as stratiform precipitation in the case of
trailing widespread precipitation regions behind the convective lines and
mesoscale convective systems (MCSs, e.g., Houze et al. (2015). Additional
details on diurnal and regime breakdowns follow in the subsequent sections.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p id="d1e1855"><bold>(a)</bold> Mean daily precipitation rate (mm h<inline-formula><mml:math id="M64" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) for all days and <bold>(b)</bold> for
only the precipitating days during the campaign (<inline-formula><mml:math id="M65" display="inline"><mml:mi mathvariant="italic">&gt;</mml:mi></mml:math></inline-formula> 1 mm). <bold>(c)</bold> The
total accumulation in millimeters for the dataset and <bold>(d)</bold> the fractional convective
accumulation as sampled by the rain gauges for the summary campaign and
associated wet and dry season conditions.</p></caption>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f07.png"/>

      </fig>

<sec id="Ch1.S3.SS1">
  <title>Cloud and precipitation diurnal cycles</title>
      <p id="d1e1899">Figure 6 shows diurnal CF profile breakdowns for each cloud category. The
“cirrus” and “shallow” cloud categories are combined into a single panel
since these cloud definitions do not overlap in altitude. Seasonal
variations in the diurnal CF by cloud category are described in the next
section. Figure 6a indicates that cirrus clouds are the most commonly
observed clouds during the afternoon and overnight hours, whereas shallow
cloud observations dominate the early morning hours after sunrise into the
mid-afternoon. Combining Fig. 6a with summary cloud occurrence values in
Table 2, shallow cumulus clouds in the Amazon are observed with relatively high
frequency throughout most of the day (<inline-formula><mml:math id="M66" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 22 %). Shallow
clouds in the early morning align with low-level weak ascending air motions
(Fig. 4a) and the positive advection of moisture (Fig. 4d). The most common
cirrus cloud locations correspond to relatively high RH regions in the
upper atmosphere seen in Fig. 4g, where the air is close to saturation with
respect to ice (not shown).</p>
      <p id="d1e1909">Congestus (Fig. 6c) and deep convective (Fig. 6d) clouds are prominent
starting at noon into the late afternoon, with peak CF coverage 1–2 h after
local noon. Deeper clouds that include MCS passages (identifiable
using SIPAM observations) appear to maintain higher CFs into the overnight
hours (associated with trailing stratiform regions). Integrated column
behaviors are similar to those found from satellite over Manaus from Machado
et al. (2004); specifically, cloud coverage is high throughout the day,
peaking after local noon and associated with increased cirrus (Fig. 6a),
cirrostratus (Fig. 6b) and deeper convective clouds (Fig. 6d). The T3
location exhibits a pronounced diurnal cycle associated with deeper
convection (as also in Saraiva et al., 2016). This pronounced behavior is
further representative of the fortuitous placement for the T3 AMF site,
wherein daily cloud life cycles also phase well with propagating sea breeze
intrusions over this portion of the Amazon basin (Burleyson et al., 2016).
Primary diurnal peak behaviors of these clouds (enhanced afternoon
convection and reduced overnight convective development) are associated with
mid- and upper-level upward motion in the afternoon and downward air motion
from night to the early morning (Fig. 4a).</p>
      <p id="d1e1912">Congestus and altocumulus exhibit weak peaks in the pre-dawn hours (around
05:00 LT). This is observed primarily as a wet season congestus behavior,
possibly comparable to suggestions in previous Manaus diurnal rainfall
efforts (e.g., Machado et al., 2004). However, this contribution would
typically be dwarfed when combining the rainfall contributions from other
cloud types. We note that the non-precipitating categories of altocumulus,
altostratus and cirrostratus (Fig. 6b, e and f) share similar diurnal phasing
with cirrus clouds. Cirrus and cirrostratus are more commonly observed than
alto-cloud designations. However, we have not differentiated the
contributions to cirrus CF estimates that reflect deep convective or anvil
cloud components from other cirrus clouds. Overall, inspection of large-scale
forcing fields supports the notion that the diurnal cycle of high-level clouds is not well associated with
the diurnal cycle of the large-scale dynamics and thermodynamics. This may be
indicative of the importance of clouds that originate from anvil remnants
from deeper convective clouds or advect from elsewhere, in addition to the
clouds that are forced and developed locally.</p>
      <p id="d1e1915">Figure 7 shows the diurnal cycle of precipitation properties at the T3 site
as observed by the surface gauges collocated with RWP observations. These
plots include wet, dry and transitional season contributions (although we do
not isolate these transitional months). Average precipitation rates reflect
the average across precipitating and non-precipitating days, peaking around
12:00 to 16:00 LT (Fig. 7a), consistent with the deep convective CF in
Fig. 6d. Note that the mean rainfall rates including only days when
precipitation is present (Fig. 7b) are more comparable between wet and dry
season events, suggesting T3 results in Fig. 7a primarily reflect the
additional frequency of convection during the wet season and not its relative
intensity. The total rainfall accumulations for the various regimes are
presented in Fig. 7c. Rainfall accumulations from Fig. 7c have also been
separated into convective and stratiform types as designated by the RWP when
available (Giangrande et al., 2016). For the composite campaign (dashed line
in Fig. 7d), convective precipitation is dominant at <inline-formula><mml:math id="M67" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 76 % of the
fractional accumulation (<inline-formula><mml:math id="M68" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2300 mm) with a relatively flat
contribution diurnally (especially during the dry season). Since this fractional
accumulation is based on RWP estimates for convective fraction, it may tend
to maximize convective precipitation fraction over traditional scanning
radar-based retrievals (e.g., Steiner et al., 1995). This is because unlike
basing these designations on radar reflectivity factor properties and
buffering (proximity to convective cores based on intensity), profiler
methods also distinguish columns with convective vertical air motions
(including those from elevated, sloping updrafts that extend back into the
transitional or trailing stratiform regions for MCSs), as well as congestus
cloud precipitation (typically associated with clouds having echo tops
exceeding 4 km) as “convective” rainfall. Stratiform precipitation
(approximately 700 mm for this dataset) is more frequent (in terms of
accumulation) during the overnight hours (30–60 %) and is associated
with the trailing precipitation regions from the convective systems. Again,
based on our cloud classifications, deep convective clouds would contain
convective and widespread stratiform precipitation components.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Seasonal cloud regime cycles</title>
      <p id="d1e1939">Figure 7 also plots the diurnal breakdowns for average rainfall rate and
fractional convective accumulations during the two wet and dry seasons over
T3. Our dataset contains 103 wet season days responsible for approximately
1600 mm of precipitation and 52 dry season days responsible for
approximately 600 mm of precipitation. The wet season months are associated
with a factor of 2 increase in mean rainfall rates, but even larger
increases occur during daytime hours with much smaller changes during the
late evening and early morning (Fig. 7a). However, relative to those days
having precipitation (Fig. 7b), the differences in the mean rainfall rate
are less pronounced. This may support the notion that the dry season convection is
stronger (instantaneously), since the overall convective cell coverage is
also reduced during the dry season (e.g., Giangrande et al., 2016; Schiro, 2017). Wet and dry season convective rain fractions have similar values
(<inline-formula><mml:math id="M69" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 80 %) throughout most of the day (Fig. 7d) and only
diverge during the early morning hours when wet season convective rain
fractions drop to as low as 20 %. These diurnal patterns suggest that
organized MCSs pass over T3 primarily in the morning hours during the wet
season but are infrequent and only have a small impact on the multi-month
mean statistics.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p id="d1e1951">As in Fig. 6 but for wet season and dry season conditions.</p></caption>
          <?xmltex \igopts{width=497.923228pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f08.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p id="d1e1962">Diurnal comparison of shallow cumulus (ShCu) cloud fraction
estimates between ARM T3 (black lines and grey shading), MODIS (red box
whiskers) and GOES (multi-color, contingent on spatial domain) centered on
the ARM T3 site for <bold>(a)</bold> wet and <bold>(b)</bold> dry season breakdowns during February–December 2014.
Values in the legend reflect an averaged value during daytime
(07:00–17:00 LT, vertical dashed lines) hours. Shaded regions reflect the
observational interquartile range. MODIS box-and-whisker notches show median
values, circles show means, boxes show interquartile ranges and whiskers show
10th and 90th percentiles, respectively.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f09.png"/>

        </fig>

      <p id="d1e1978">Figure 8 plots seasonal breakdowns for the CF diurnal cycle from Fig. 6 for
the wet and dry seasons. Pronounced CF profile increases are associated with
deep convective and congestus clouds during the wet season, with the dry
season having less organized cloud contributions (Ghate and Kollias, 2016).
Overnight and/or pre-dawn deep convection and additional local congestus
development are more common in the wet season. The distinct nighttime
enhancement in stratiform precipitation (once again, often categorized under
“deep convection” in Figs. 6d, 8g and h) during the wet season is
consistent with previous findings that propagating convective cloud systems
contribute to the observed diurnal cycle of deep convection (e.g., Burleyson
et al., 2016; Tang et al., 2016). Early morning shallow cumulus CF profiles
(Fig. 8a and b) indicate frequent low clouds during wet and dry seasons,
consistent with a response to increased surface heating and an increase in
the surface latent heat flux, with the wet season reporting additional
shallow cloud development throughout the diurnal window (and the dry season
consistent with elevated LCL heights). Two separate vertical peaks of
shallow cumulus CF were observed between pre-dawn and early morning hours
(03:00–09:00 LT) during the wet season: one right above the surface and the
other at 2 km height. The surface peak is possibly associated with overnight
fog being lifted with surface heating associated with the rising sun (e.g.,
Anber et al., 2015), while the elevated peak may be associated with radiative
cooling of the residual boundary layer overnight. Cirrus CF stays elevated
during the wet and dry seasons; however, cirrostratus/anvil CFs are
substantially reduced during the dry season. This pattern suggests mostly a
local deep convective contribution to cirrostratus/anvil during the dry
season, with local convection and potentially some additional remnant anvil
or decaying MCS cloud components advected over T3 during overnight hours
under wet season conditions. Quantitative interpretation for these behaviors
is challenging due to coupled cirrus–shallow cloud sampling factors during
the overnight hours. For example, it is likely cirrus sampling is shielded
(results stemming from an MPL detection) during the wet season due to the
added presence of lower-level clouds and higher relative humidity/attenuation
limiting the usefulness of the cloud radar. In contrast, clear
low-level conditions during the overnight hours of the dry season would
likely promote improved designation of cirrus. In this regard, wet and dry
season cirrus cloud contrasts may be more pronounced than reported by this
study.</p>
      <p id="d1e1981">As highlighted in Figs. 2 and 3, wet season thermodynamical conditions
typically favor weaker CAPE, weaker CIN and higher RH in the lower to
mid-atmospheric levels, while dry seasons feature stronger CAPE, stronger
CIN and lower RH at the same levels. As inferred from the large-scale
forcing fields in Fig. 4, wet season conditions favor higher column relative
humidity, as well as heightened moisture convergence throughout the profile.
The wet season also features more favorable omega fields at middle levels for
shallow to deeper convective cloud transitions. This behavior is not
surprising and also consistent with forcing datasets being constrained using
mean domain precipitation estimates. However, as with first-year
GoAmazon2014/5 studies (e.g., Collow et al., 2016), only weak correlations
are found between cloud state and thermodynamic parameters (not shown).
Nevertheless, coupled thermodynamical and environmental forcing conditions
from Sect. 2 support these observations of more frequent cloudiness during
the wet season, visible across almost all cloud categories (Fig. 8).</p>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Comparison of cloud observations with satellite: shallow cumulus
representativeness</title>
      <p id="d1e1990">An important consideration when interpreting ARM T3 observations is the
spatiotemporal representativeness of the cloud fractions over T3 within this
central Amazon region. Satellite observations provide one avenue to better
understand the representativeness of the location, while also providing
insights into the advantages afforded by ground-based ARM cloud
observations. Several recent GoAmazon2014/5 studies including Burleyson et
al. (2016) and Giangrande et al. (2016) have investigated the
representativeness of the T3 site as compared to satellite and/or radar
perspectives. In these studies, they found evidence suggesting that T3-observed
deep convection is well correlated with the regional cloud and
precipitation to within a few hundred kilometers of the site. As a
complementary reference, we approach the topic from a shallow cumulus
perspective, as these clouds provide some of the better ground- and
aircraft-based dataset opportunities collected during this campaign.</p>
      <p id="d1e1993">Figure 9 provides a diurnal comparison plot of shallow cumulus cloud
fraction between T3 ground-based estimates, the Geostationary Operational
Environmental Satellite (GOES) SatCORPS (Minnis et al., 2011) and the
Moderate Resolution Imaging Spectroradiometer (MODIS; Platnick et al., 2003) products for wet and dry seasons (comparisons performed between
February and December of 2014 when both satellite datasets are available).
Both satellite cloud products are based on multi-channel passive sensors
on board, providing fundamentally different cloud detection techniques
compared to active sensors at T3. We chose these satellite data products
because they provide large area coverage and frequent updates, making the
comparison with single-point surface observations more amenable. The cloud
property retrievals are available at 4 km spatial and 30 min temporal
resolution for GOES, and at 1 km spatial and two overpasses during
<inline-formula><mml:math id="M70" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10:30 and <inline-formula><mml:math id="M71" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 13:30 LT for MODIS. Shallow
cumulus clouds are defined at pixel-level cloud-top height below 3 km,
consistent with T3 ground-based definitions. Shallow cumulus cloud fractions
are then calculated at several spatial coverage domains (from 25 to 150 km) for GOES and at 25 km
domain for MODIS. We find that the GOES mean CF
estimates are similar in their diurnal cycle and magnitude as a function of
the domain size, with increasing variability in CF estimates (shadings) to
the smaller domain sizes. The MODIS mean CF estimates are higher than those
obtained from GOES but share similar diurnal patterns and ranges of
variability to the GOES smaller domain estimates.</p>
      <p id="d1e2010">In comparison with the satellite observations, single-point T3 ground
estimates of shallow cumulus are the largest and carry the largest
observational spread but demonstrate diurnal and peak behaviors that are
roughly comparable to the satellite counterparts. Discrepancies in CF
estimate (mean) magnitude are not surprising, with the largest discrepancies
found in the wet season. These differences may be related to several factors
including the obscured view of shallow clouds from passive satellite
retrievals, for example, due to the blockage from higher clouds (i.e.,
multi-layer clouds). Moreover, over the entire field campaign period, single-layer
clouds occur <inline-formula><mml:math id="M72" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 48 % of the time, while multi-layer
clouds occur <inline-formula><mml:math id="M73" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 % of the time. During the wet seasons,
multi-layer clouds occur twice as often as during the dry seasons
(<inline-formula><mml:math id="M74" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 28 % vs. <inline-formula><mml:math id="M75" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 11 %). The coarser resolution
and/or sensitivity of the satellite platforms to shallower cumulus may also
contribute to the lower mean CF values. The higher-resolution MODIS product
shows higher shallow cumulus CF estimates than GOES during MODIS overpass
times, demonstrating additional benefits of increased resolution in
detecting shallow cumulus clouds, especially compared to ground-based active
remote sensing observations. Finally, unavoidable discrepancies and
variability still may trace to spatial domain versus column-temporal CF
definition differences (e.g., Berg and Stull, 2002) or factors including
localized circulations generated by river breezes (e.g., Burleyson et al., 2016). Overall, this shallow cumulus comparison between T3 ground-based
and satellite observations suggests that mean cloud fractions near the T3
location should be representative of larger domain cloud properties to
within a few hundred kilometers.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p id="d1e2043">Mean cloud frequency and CRE for all GoAmazon2014/5 data. <bold>(a)</bold>
Cloud frequency of occurrence as the lowest cloud in the column as a
function of the diurnal cycle (<inline-formula><mml:math id="M76" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis), <bold>(b)</bold> conditional SW CRE, <bold>(c)</bold> mean LW
CRE (frequency of occurrence times for the conditional LW CRE) and <bold>(d)</bold> mean SW
CRE (frequency of occurrence times for the conditional SW CRE). Note that panels <bold>(a, c)</bold> are
for all hours and <bold>(b, d)</bold> are for daytime hours only. The white boxes are
hours with insufficient data. The white numbers in panels <bold>(c, d)</bold> show the mean CRE
values (in Wm<inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> averaged across the diurnal cycle (including
nighttime).</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f10.pdf"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S4">
  <title>Cloud-type influence on surface energy and fluxes</title>
      <p id="d1e2103">AMF instrumentation provides unique capabilities to characterize the
variability of clouds and their impact on the Amazon surface energy budget
(e.g., Collow and Miller, 2016). Previously, Burleyson et al. (2015) quantified
the diurnal cycle of surface cloud radiative effects (CREs) over
the three ARM sites in the tropical western Pacific (TWP, e.g., Long et al., 2016; ARM, 2013) using long-term measurements of ARSCL cloud profiles and
surface radiative flux analysis. CRE is defined as cloudy-sky downwelling
flux minus clear-sky downwelling flux. By breaking down the aggregate
surface CRE by cloud type across the diurnal cycle, Burleyson et al. (2015)
found that the largest source of shortwave surface CRE at these three TWP
sites comes from low clouds due to their high frequency of occurrence.
Although deep convective clouds have a strong influence on surface shortwave
radiation when present, their aggregate impact is limited by a lower
frequency of occurrence compared to shallow cumulus. Longwave CRE is
typically a factor of 5–6 smaller than SW CRE (e.g., Culf et al., 1998; Malhi
et al., 2002; Burleyson et al., 2015). This study will limit most
interpretation to SW CRE. The 2-year deployment during GoAmazon2014/5 allows
us to examine the impact of various cloud types on the surface energy budget
over the Amazon, providing new details for targeted model improvements of
cloud radiative effects in this climatically important but undersampled
region. This deployment also provides a unique opportunity to contrast
“green ocean” cloud radiative effects during GoAmazon2014/5 with tropical
ARM fixed-site measurements in the TWP.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p id="d1e2109">Mean downwelling SW radiative flux (SWdn), estimated clear-sky SW
radiative flux (CSWdn), aggregate SW cloud radiative effect (SW CRE; SWdn –
CSWdn), downwelling LW radiative flux (LWdn), estimated clear-sky LW
radiative flux (CLWdn) and aggregate LW cloud radiative effect (LW CRE; LWdn –
CLWdn). All units are in Wm<inline-formula><mml:math id="M78" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and are averaged across the diurnal
cycle. The Darwin, Manus and Nauru results are taken from Burleyson et al. (2015) (Table 3).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">SWdn</oasis:entry>  
         <oasis:entry colname="col3">CSWdn</oasis:entry>  
         <oasis:entry colname="col4">SW CRE</oasis:entry>  
         <oasis:entry colname="col5">LWdn</oasis:entry>  
         <oasis:entry colname="col6">CLWdn</oasis:entry>  
         <oasis:entry colname="col7">LW CRE</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">  
         <oasis:entry namest="col1" nameend="col7">Manaus (central Amazonia) </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">All data</oasis:entry>  
         <oasis:entry colname="col2">197.5</oasis:entry>  
         <oasis:entry colname="col3">291.9</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M79" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>94.4</oasis:entry>  
         <oasis:entry colname="col5">420.3</oasis:entry>  
         <oasis:entry colname="col6">405.9</oasis:entry>  
         <oasis:entry colname="col7">14.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Wet seasons</oasis:entry>  
         <oasis:entry colname="col2">183.6</oasis:entry>  
         <oasis:entry colname="col3">305.0</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M80" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>121.5</oasis:entry>  
         <oasis:entry colname="col5">423.7</oasis:entry>  
         <oasis:entry colname="col6">405.9</oasis:entry>  
         <oasis:entry colname="col7">17.8</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Dry seasons</oasis:entry>  
         <oasis:entry colname="col2">216.2</oasis:entry>  
         <oasis:entry colname="col3">276.6</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M81" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>60.4</oasis:entry>  
         <oasis:entry colname="col5">415.0</oasis:entry>  
         <oasis:entry colname="col6">404.9</oasis:entry>  
         <oasis:entry colname="col7">10.1</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry namest="col1" nameend="col7">Darwin </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">All data</oasis:entry>  
         <oasis:entry colname="col2">232.4</oasis:entry>  
         <oasis:entry colname="col3">293.4</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M82" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>61.0</oasis:entry>  
         <oasis:entry colname="col5">407.0</oasis:entry>  
         <oasis:entry colname="col6">394.6</oasis:entry>  
         <oasis:entry colname="col7">12.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Wet seasons</oasis:entry>  
         <oasis:entry colname="col2">226.5</oasis:entry>  
         <oasis:entry colname="col3">321.5</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M83" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>95.0</oasis:entry>  
         <oasis:entry colname="col5">427.9</oasis:entry>  
         <oasis:entry colname="col6">411.5</oasis:entry>  
         <oasis:entry colname="col7">16.4</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Dry seasons</oasis:entry>  
         <oasis:entry colname="col2">239.1</oasis:entry>  
         <oasis:entry colname="col3">262.7</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M84" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>23.5</oasis:entry>  
         <oasis:entry colname="col5">384.2</oasis:entry>  
         <oasis:entry colname="col6">376.4</oasis:entry>  
         <oasis:entry colname="col7">7.8</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry namest="col1" nameend="col7">Manus </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">All data</oasis:entry>  
         <oasis:entry colname="col2">205.1</oasis:entry>  
         <oasis:entry colname="col3">299.8</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M85" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>94.7</oasis:entry>  
         <oasis:entry colname="col5">423.5</oasis:entry>  
         <oasis:entry colname="col6">408.2</oasis:entry>  
         <oasis:entry colname="col7">15.3</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry namest="col1" nameend="col7">Nauru </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">All data</oasis:entry>  
         <oasis:entry colname="col2">237.7</oasis:entry>  
         <oasis:entry colname="col3">302.1</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M86" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>64.4</oasis:entry>  
         <oasis:entry colname="col5">420.6</oasis:entry>  
         <oasis:entry colname="col6">408.5</oasis:entry>  
         <oasis:entry colname="col7">12.2</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e2448">The frequency of occurrence for the lowest cloud types and their associated
radiative fluxes (Tables 2 and 3) are composited into hourly bins across the
diurnal cycle (Fig. 10). Table 3 is also complemented by Fig. 11 to better
illustrate the diurnal cycle of those mean values and their variability for
the complete record, including wet/dry season breakdowns. The methodology
to produce the radiative fluxes in these tables is similar to Burleyson et
al. (2015) to facilitate comparison with previous results over the three TWP
sites. We utilize “as lowest cloud type” in the column designations in our
analysis (e.g., second column in Table 2) because clouds closest to the surface
typically have the larger impact on the surface radiative fluxes (Burleyson
et al., 2015). However, we also note that it is not possible to separate the
radiative impact of multi-layer clouds, and sample sizes are potentially too
small to only consider single-layer cloud periods. For higher-altitude cloud
types, the frequency as lowest cloud in the column is lower than the total
cloud frequencies discussed in Sect. 3 (as reported in the first column of Table 2).
The difference in frequencies is indicative of how often multi-layer
clouds are present (e.g., cirrus clouds are often present above shallow
cumulus).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p id="d1e2454">As in Table 3 except with the full diurnal cycle for the <bold>(a)</bold>
mean downwelling SW radiative flux, <bold>(b)</bold> estimated clear-sky SW radiative
flux, <bold>(c)</bold> aggregate SW cloud radiative effects, <bold>(d)</bold> downwelling LW radiative
flux, <bold>(e)</bold> estimated clear-sky LW radiative flux and <bold>(f)</bold> aggregate LW cloud
radiative effect. All units are in Wm<inline-formula><mml:math id="M87" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Shaded regions represent the
observational standard deviation for these estimates during the hour.</p></caption>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f11.png"/>

      </fig>

      <p id="d1e2494">One notable discrepancy with the previous study is that the instrumentation
for classifying the clouds that produce significant precipitation (rain rate
&gt; 1 mm h<inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> during GoAmazon2014/5 is better than the
approach used by Burleyson et al. (2015) due to the merging of the RWP
dataset. Specifically, cloud profiles with rain rate larger than 1 mm h<inline-formula><mml:math id="M89" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
are discarded in Burleyson et al. (2015) but retained for our
study. Therefore, we anticipate that cloud radiative effects from
precipitating convective clouds (including both congestus and deep
convection) may be more accurate than Burleyson et al. (2015).</p>
<sec id="Ch1.S4.SS1">
  <title>Bulk cloud radiative effects</title>
      <p id="d1e2529">The average aggregated shortwave (SW) and longwave (LW) fluxes and CRE
measured at the T3 site are given in Table 3, along with long-term results
from the three TWP sites (Darwin, Manus, Nauru) as reported in Burleyson et
al. (2015). SW CRE dominates (magnitude) as compared to LW CRE. The mean SW
CRE (<inline-formula><mml:math id="M90" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>94.4 Wm<inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and LW CRE (14.5 Wm<inline-formula><mml:math id="M92" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>  averaged across the
diurnal cycle (nighttime included) over the entire GoAmazon2014/5 are most
similar to those found at Manus, which is the cloudiest of the three TWP
sites and most influenced by convection in the western Pacific warm pool.
The Darwin, Australia, site has a strong monsoonal cycle (i.e., wet/dry
season) and the Nauru site is strongly impacted by the El Niño–Southern
Oscillation (ENSO) variability (Burleyson et al., 2015). Manus would be the
one most qualitatively consistent with the GoAmazon2014/5 “green ocean”
moniker. During the wet season, SW CRE (<inline-formula><mml:math id="M93" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>121.5 Wm<inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is twice the dry
season value (<inline-formula><mml:math id="M95" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>60.4 Wm<inline-formula><mml:math id="M96" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, although CREs for this region of the Amazon
basin are substantially larger than for Darwin during all seasons. However,
although mean behaviors initially appear similar, the properties from
individual cloud types are not necessarily consistent between, for example,
Manus and Manaus (e.g., see Burleyson et al., 2015; Table 4). A more
thorough breakdown of the factors driving these specific differences (e.g.,
the time of day when a given cloud type is more or less prevalent, the
frequency of multi-layer clouds or variance in the clear-sky downwelling SW
or LW flux) is recommended as a future activity from these GoAmazon2014/5
datasets.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><caption><p id="d1e2616">Wet <bold>(a, c)</bold> and dry <bold>(b, d)</bold> season comparisons for
cloud frequency and SW CRE. <bold>(a, b)</bold> Cloud frequency of occurrence as the
lowest cloud in the column, as a function of the diurnal cycle (<inline-formula><mml:math id="M97" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis).
<bold>(c, d)</bold> Mean SW CRE (frequency of occurrence times the conditional SW CRE).
The white numbers in panels <bold>(c, d)</bold> show the mean CRE values (in Wm<inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> averaged
across the diurnal cycle (including nighttime). The white boxes represent
hours with insufficient data.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f12.pdf"/>

        </fig>

      <p id="d1e2663">Table 2 gives bulk cloud frequency and their radiative characteristics
separated by cloud types and by season. The results reveal the averaged
reduction of downwelling SW flux when a particular cloud type is present.
Consistent with the SW transmissivity results (Table 2) and those found by
Burleyson et al. (2015), congestus and deep convective clouds dominate the
conditional (e.g., not a mean property) SW CRE, while cirrus clouds have the
smallest effect on downwelling SW flux. Note that the conditional CRE presented
in Table 2 includes both single-layer clouds, as well as when additional
cloud layers are above the lowest detected cloud layer. This is done
deliberately to be consistent with the method used by Burleyson et al. (2015) such that the GoAmazon2014/5 results can be directly compared with
their long-term results from the ARM TWP sites. Examination of the averaged
conditional SW CRE calculated using only single-layer clouds reveals a
relative reduction of <inline-formula><mml:math id="M99" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 26 % for altocumulus and
<inline-formula><mml:math id="M100" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 20 % for shallow cumulus clouds and negligible difference
in other cloud types. The reduction in SW CRE when single-layer clouds are
considered is likely caused by frequent multi-layer cloud occurrence of
cirrus/cirrostratus clouds over shallow cumulus or altocumulus (i.e.,
artificially inflating the surface SW CRE of cumulus clouds due to
additional SW flux reflection by the upper-level clouds). The difference in
conditional SW CRE between single- and multi-layer clouds does not change
their contribution to the average CRE as discussed below.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Diurnal cycle of cloud radiative effects by cloud type</title>
      <p id="d1e2686">Comparisons between wet and dry season diurnal behaviors for the frequency
of the lowest clouds in the column and the associated mean SW CRE are shown
in Fig. 12. Shallow cumulus clouds dominate the SW CRE in both seasons, although
their frequency peaks 2 h earlier during wet season (10:00–11:00 LT) than
during dry season (12:00–13:00 LT). While the dry season features reduced
frequency and SW CRE of all cloud types, the contrast is most visible for
the three convective cloud types. Shallow, congestus and deep convective
cloud mean SW CRE in the wet season are 50, 69 and 72 % larger
than those in the dry season, respectively (their mean SW CRE values across
the diurnal cycle are shown in Fig. 12c, d).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13"><caption><p id="d1e2691">Shallow cumulus cloud micro- and macrophysics observed by AAF G1
aircraft and AMF surface instrumentation at the T3 site during the two IOPs
in GoAmazon2014/5. <bold>(a)</bold> Cloud condensation nuclei number concentration, <bold>(b)</bold>
cloud droplet total number concentration, <bold>(c)</bold> cloud particle size
distribution, <bold>(d)</bold> cloud liquid water content (LWC), <bold>(e)</bold> cloud thickness and <bold>(f)</bold>
cloud liquid water path (LWP).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/17/14519/2017/acp-17-14519-2017-f13.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S4.SS3">
  <title>Shallow cumulus cloud properties</title>
      <p id="d1e2725">From the previous section, shallow cumulus (those most frequently observed
during the campaign) are associated with large discrepancies in cloud
radiative effects between the wet and dry seasons (Table 2 and Fig. 13).
Further investigation into these clouds and their radiative differences is
enabled using aircraft observations available during the GoAmazon2014/5
campaign IOPs. As discussed in Sect. 2.2, three cloud particle size
distribution probes are combined to create the full DSD (Fig. 13). Combining
the cloud microphysical properties in shallow cumulus measured by aircraft
observations and the cloud macrophysical properties measured by ground-based
instrumentations allows us to explain the cloud radiative effect differences
from wet and dry seasons reported in the previous section.</p>
      <p id="d1e2728">Cloud particle size distributions (Fig. 13c) in the wet season are
characterized by a lesser occurrence of small droplets and a more frequent
occurrence of large droplets when compared with cumulus clouds in the dry
season. Total number concentration of cloud drops is more than a factor of 2
larger in the dry season than in the wet season (Fig. 13b). However, the
corresponding LWC is roughly the same between the seasons (Fig. 13d).
In situ cloud condensation nuclei (CCN) concentration is also larger in the
dry season than in the wet season (Fig. 13a). Aircraft cloud and CCN
measurements are consistent with studies that show clouds influenced by
aerosol tend to have larger concentrations of smaller droplets and fewer
precipitation-sized drops for clouds with similar LWC (e.g., Twomey, 1974;
Cecchini et al., 2016). Ground-based radar measurements of single-layer
shallow cumulus clouds at the T3 site show thicker clouds occurring more
frequently in the wet season (Fig. 13e). Likewise, more frequent occurrence
of large liquid water path (LWP) from the T3 ground-based MWR in the wet season
is consistent with the presence of more robust (i.e., vertically developed)
shallow cumulus clouds (Fig. 13f). Therefore, shallow cumulus clouds in the wet
season are characterized by fewer but more frequent larger cloud
droplets, while those in the dry season are characterized by more frequent
smaller cloud droplets (Fig. 13b, c). Interestingly, these differences in
DSDs result in comparable LWC between the wet/dry seasons (Fig. 13d). As a
result, the stronger shallow cumulus conditional SW CRE in the wet season,
which reflects the difference in microphysical properties, mainly arises
from higher values of vertically integrated properties such as LWP and cloud
thickness (Fig. 13e, f).</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Discussion, summary and future opportunities</title>
      <p id="d1e2739">This study documents the continuous observations collected by the DOE AMF
and AAF facilities to characterize cloud properties, collocated large-scale
environments and cloud radiative effects over the 2-year GoAmazon2014/5
campaign. This extended ground deployment included high temporal and
vertical resolution cloud profiling instrumentation, enabling a unique
perspective on various cloud types and their diurnal evolution to complement
previous satellite-based perspectives over this undersampled region. Routine
thermodynamic profiling over the diurnal cycle, targeted IOP aircraft
sampling and collocated aerosol instrumentation support future
opportunities to differentiate and interpret cloud life cycle and process
factors influenced by environmental forcing controls and those influenced by
coupled cloud–aerosol interactions within pristine and polluted conditions
(e.g., Martin et al., 2017). Analysis performed in this study and by previous
GoAmazon2014/5 works (Burleyson et al., 2016; Giangrande et al., 2016)
suggests that both shallow cumulus and deep convection observed over the AMF site are
representative of larger domain cloud properties to within a few hundred
kilometers. These studies indicate the usefulness of the datasets collected
during the campaign to enable future studies to better understand the
forcing control of the diurnal cycle, seasonal variability of clouds in the
central Amazon region and associated feedbacks to the climate system.</p>
      <p id="d1e2742">The propensity for cumulus to initiate, deepen and organize across the
Amazon basin drives much of the observed wet and dry season CF profile
diurnal contrasts. Amazon wet season environments promote enhanced shallow
cumulus throughout the diurnal cycle, as well as additional deeper
precipitating cloud development likely associated with reduced CIN,
heightened moisture convergence and relative humidity through atmospheric
middle levels. Wet season and transitional periods exhibiting sharper CAPE and
CIN contrasts potentially enhance the likelihood for deep convection to
develop, promoting anvil and trailing stratiform regions that carry into the
overnight hours and propagate across the Amazon basin. Weaker secondary
peaks in congestus CFs are also found during the wet season within pre-dawn
hours, revealed with confidence from coupled ARM profiling observations.
Nevertheless, relatively favorable thermodynamical conditions during both
seasons support local congestus and deeper cloud formation for this ARM
dataset, which includes over 200 days recording measurable rainfall. This
regularly occurring daily precipitation is primarily attributed to isolated
and locally driven convective cells, supported by the 76 % rainfall
accumulation associated with convective modes, as well as the pronounced
diurnal cycle for this rainfall centered near local noon. These ideas and
the representativeness of the T3 measurements for cloud studies beyond
examples presented within this study for shallow cumulus may be further
explored using spatial observations as available from collocated SIPAM radar
observations during GoAmazon2014/5.</p>
      <p id="d1e2745">Congestus and deeper convection are also shown to dominate the conditional
surface SW CRE, similar to results from previous tropical ARM analyses over
the TWP region. As one possible example for the appropriateness of the
Amazon “green ocean” moniker, mean CRE properties for the Amazon are found
to be similar to the TWP ARM Manus location in the western Pacific warm pool
that favors frequent tropical convection with complex influences from
adjacent large islands within the maritime continent (e.g., Mather, 2005).
However, a more thorough analysis is recommended, as these similarities in
mean CRE properties do not always hold for individual cloud types.
Similarly, a natural contrast between Amazon SW CRE behaviors and those from
ARM Nauru observations stems from the strong ENSO-driven variability over
this site as a key driver for cloud coverage (e.g., Jensen et al., 1998; Burleyson et al., 2015).
The cumulative Amazon CRE is also larger when
compared to the Darwin wet season (given the “dry” season for Darwin is void
of substantial cloud/precipitation). This behavior is partially attributed
to the Darwin monsoonal environments that fluctuate between wider-spread
tropical “active” cloud conditions and continental “break” monsoonal regimes
that promote stronger convection (e.g., Holland, 1986; May and Ballinger, 2007; Giangrande et al., 2014). Overall, cumulative results from CRE help
emphasize the important role of shallow cumulus for the Amazon, including
the dry season, and the favorable low-level conditions (e.g., weak ascending
air motions, positive moisture advection and moist surface) throughout the
year that promote elevated shallow cumulus frequency. Given this relative
importance, these clouds must be properly simulated in both global and
regional climate models if the surface radiative budget (that affects
land–atmosphere interactions and subsequent convective cloud and
precipitation formations over the T3 site) is to be properly represented.</p>
      <p id="d1e2748">Ground-based multi-sensor measurements and aircraft observations further
support thicker cumulus clouds occurring more frequently in the wet season.
These clouds are those that have larger LWP that would also promote the
heightened SW CRE and LW CRE contributions. Aircraft and ground-based cloud
and CCN measurements and properties for shallow cumulus clouds in this study also
provides information on the role of the Manaus pollution plume in cumulus cloud
evolution. A key motivation behind GoAmazon2014/5 was the opportunity to
test various cloud–aerosol interactions in the Amazon. Shallow cumulus
summaries provided in our study are consistent with the hypothesis that
clouds influenced by aerosol tend to have a larger concentration of smaller
droplets and fewer precipitation-sized drops for clouds with similar LWC. As
the clean (wet) and polluted (dry) cloud conditions tend to align with
large-scale regime thermodynamical controls, subsequent studies will need to
differentiate the role of the Manaus plume that influences the observed
differences in shallow cumulus microphysical properties and examine the
extent that the reduced frequency for MCSs removes Manaus pollution. In that
regard, impacts on shallow cumulus clouds could have potentially a more
profound impact as far as how shallow clouds transition to deeper
convection, hence affecting hydrological cycle and land–atmosphere
feedbacks.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e2755">All ARM datasets used for this study may be downloaded at <uri>http://www.arm.gov</uri>
and associated with several “value added product” streams
(e.g., ARM Climate Research Facility, 1993, 2001, 2005, 2009, 2013, 2014). MODIS Aqua and
Terra, level L2, collection 6, cloud property data with 1 km resolution are
obtained from NASA's Distributed Active Archive Centers (DAACs)
<uri>https://earthdata.nasa.gov/about/daacs</uri>, (NASA, 2014a). These data are part of the NASA
Earth Observing System Data and Information System (EOSDIS) managed by the
NASA Earth Science Data and Information System (ESDIS) project. Cloud
properties (including effective cloud-top heights) from the 13th
Geostationary Operational Environmental Satellite (GOES-13) were derived via
SatCORPS (Satellite Cloud Observations and Radiative Property retrieval
System), a suite of algorithms including the four-channel VISST (visible
infrared solar-infrared split-window technique) daytime algorithm, and
nighttime three-channel SIST (solar-infrared infrared split-window technique)
and SINT (solar-infrared infrared near-infrared technique), which are versions similar
to those described by Minnis et al. (2011). This cloud and radiative
property dataset with 4 km resolution (v4.1) was processed for the GoAmazon2014/5
domain covering 3<inline-formula><mml:math id="M101" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N–10<inline-formula><mml:math id="M102" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, 50–70<inline-formula><mml:math id="M103" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> W. It was obtained from mid-February to December 2014,
from the NASA Langley Research Center Cloud and Radiation Research Group
(<uri>https://satcorps.larc.nasa.gov/ARM-GOAMAZON</uri>, NASA, 2014b). A subset of this
dataset, covering the AMF and local vicinity (5<inline-formula><mml:math id="M104" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math id="M105" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 5<inline-formula><mml:math id="M106" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>), can be obtained from the ARM archive.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e2823">The authors declare that they have no conflict of interest.</p>
  </notes><notes notes-type="sistatement">

      <p id="d1e2829">This article is part of the special issue “Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) (ACP/AMT/GI/GMD inter-journal SI)”.
It is not associated with a conference.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e2835">This paper has been authored by employees of Brookhaven Science
Associates, LLC, under contract no. DE-SC0012704 with the US Department of
Energy (DOE). The publisher by accepting the paper for publication
acknowledges that the United States Government retains a non-exclusive,
paid-up, irrevocable, world-wide license to publish or reproduce the
published form of this paper, or allow others to do so, for United
States Government purposes. Zhe Feng at the Pacific Northwest National
Laboratory (PNNL) is supported by the US DOE, as part of the Atmospheric
System Research (ASR) Program. The PNNL is operated for DOE by Battelle
Memorial Institute under contract no. DE-AC05-76RL01830. Work at the Lawrence
Livermore National Laboratory (LLNL) was supported by the DOE ARM program
and performed under the auspices of the US DOE by LLNL under contract
no. DE-AC52-07NA27344. Funding was also obtained from the US DOE, the São
Paulo Research Foundation (FAPESP – 2009/15235-8), the Amazonas State
University (UEA) and the Amazonas Research Foundation (FAPEAM -
062.00568/2014). The work was conducted under scientific licenses
001030/2012-4, 001262/2012-2 and 00254/2013-9 of the Brazilian National
Council for Scientific and Technological Development (CNPq). Institutional
support was provided by the Central Office of the Large Scale Biosphere
Atmosphere Experiment in Amazonia (LBA), the National Institute of Amazonian
Research (INPA), the National Institute for Space Research (INPE) and the
Brazil Space Agency (AEB). We also acknowledge the Atmospheric Radiation
Measurement (ARM) Climate Research Facility, a user facility of the US
DOE, Office of Science, sponsored by the Office of Biological and
Environmental Research, and support from the ASR program of that office. The
authors thank the three anonymous reviewers for their constructive comments
that helped to improve the manuscript. The authors give additional thanks to Mark Miller (Rutgers
University) for an internal review of this paper and acknowledge
support from Duli Chand and Mandy Thieman for satellite datasets. The
GoAmazon2014/5 GOES-13 satellite retrievals were also supported by the US
Department of Energy, Office of Biological and Environmental Research,
Atmospheric System Research Program award DE-SC0000991.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: Timothy Garrett<?xmltex \hack{\newline}?>
Reviewed by: three anonymous referees</p></ack><ref-list>
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    <!--<article-title-html>Cloud characteristics, thermodynamic controls and radiative impacts during the Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) experiment</article-title-html>
<abstract-html><p class="p">Routine cloud, precipitation and thermodynamic observations
collected by the Atmospheric Radiation Measurement (ARM) Mobile Facility
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diurnal to large-scale thermodynamic regime controls on the clouds and
precipitation over the undersampled, climatically important Amazon basin
region. The extended ground deployment of cloud-profiling instrumentation
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vertical resolution. This longer-term ground deployment, coupled with two
short-term aircraft intensive observing periods, allowed new opportunities to
better characterize cloud and thermodynamic observational constraints as
well as cloud radiative impacts for modeling efforts within typical Amazon
<q>wet</q> and <q>dry</q> seasons.</p></abstract-html>
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