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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-16-4081-2016</article-id><title-group><article-title>Understanding sources of organic aerosol during CalNex-2010<?xmltex \hack{\break}?> using the CMAQ-VBS</article-title>
      </title-group><?xmltex \runningtitle{Understanding OA during CalNex using CMAQ-VBS}?><?xmltex \runningauthor{M.~C.~Woody et~al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Woody</surname><given-names>Matthew C.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2298-7822</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Baker</surname><given-names>Kirk R.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3 aff4">
          <name><surname>Hayes</surname><given-names>Patrick L.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3 aff4">
          <name><surname>Jimenez</surname><given-names>Jose L.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6203-1847</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Koo</surname><given-names>Bonyoung</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-0526-8113</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Pye</surname><given-names>Havala O. T.</given-names></name>
          <email>pye.havala@epa.gov</email>
        <ext-link>https://orcid.org/0000-0002-2014-2140</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>U.S. Environmental Protection Agency, Research Triangle Park, NC, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Université de Montréal, Department of Chemistry, Montreal, QC, Canada</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Cooperative Institute for Research in Environmental Sciences (CIRES), University of Colorado, Boulder, CO, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Ramboll Environ International Corporation, Novato, CA, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Havala O. T. Pye (pye.havala@epa.gov)</corresp></author-notes><pub-date><day>29</day><month>March</month><year>2016</year></pub-date>
      
      <volume>16</volume>
      <issue>6</issue>
      <fpage>4081</fpage><lpage>4100</lpage>
      <history>
        <date date-type="received"><day>23</day><month>July</month><year>2015</year></date>
           <date date-type="rev-request"><day>5</day><month>October</month><year>2015</year></date>
           <date date-type="rev-recd"><day>11</day><month>February</month><year>2016</year></date>
           <date date-type="accepted"><day>15</day><month>March</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri>
<self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>


      <abstract>
    <p>Community Multiscale Air Quality (CMAQ) model simulations utilizing the
traditional organic aerosol (OA) treatment (CMAQ-AE6) and a volatility basis
set (VBS) treatment for OA (CMAQ-VBS) were evaluated against measurements
collected at routine monitoring networks (Chemical Speciation Network (CSN)
and Interagency Monitoring of Protected Visual Environments (IMPROVE)) and
those collected during the 2010 California at the Nexus of Air Quality and
Climate Change (CalNex) field campaign to examine important sources of
OA in southern California.</p>
    <p>Traditionally, CMAQ treats primary organic aerosol (POA) as nonvolatile and
uses a two-product framework to represent secondary organic aerosol (SOA)
formation. CMAQ-VBS instead treats POA as semivolatile and lumps OA using
volatility bins spaced an order of magnitude apart. The CMAQ-VBS approach
underpredicted organic carbon (OC) at IMPROVE and CSN sites to a greater
degree than CMAQ-AE6 due to the semivolatile POA treatment. However,
comparisons to aerosol mass spectrometer (AMS) measurements collected at
Pasadena, CA, indicated that CMAQ-VBS better represented the diurnal profile
and primary/secondary split of OA. CMAQ-VBS SOA underpredicted the average
measured AMS oxygenated organic aerosol (OOA, a surrogate for SOA)
concentration by a factor of 5.2, representing a considerable improvement to
CMAQ-AE6 SOA predictions (factor of 24 lower than AMS).</p>
    <p>We use two new methods, one based on species ratios (SOA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO and
SOA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>) and another on a simplified SOA parameterization, to
apportion the SOA underprediction for CMAQ-VBS to slow photochemical
oxidation (estimated as 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> lower than observed at Pasadena using
<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi>log⁡</mml:mi></mml:mrow></mml:math></inline-formula>(NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> : NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>y</mml:mi></mml:msub></mml:math></inline-formula>)), low intrinsic SOA formation efficiency (low by
1.6 to 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> for Pasadena), and low emissions or excessive dispersion
for the Pasadena site (estimated to be 1.6 to 2.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> too
low/excessive). The first and third factors are common to CMAQ-AE6, while the
intrinsic SOA formation efficiency for that model is estimated to be too low
by about 7 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>.</p>
    <p>From source-apportioned model results, we found most of the CMAQ-VBS modeled
POA at the Pasadena CalNex site was attributable to meat cooking emissions
(48 %, consistent with a substantial fraction of cooking OA in the
observations). This is compared to 18 % from gasoline vehicle emissions,
13 % from biomass burning (in the form of residential wood combustion),
and 8 % from diesel vehicle emissions. All “other” inventoried emission
sources (e.g., industrial, point, and area sources) comprised the final
13 %. The CMAQ-VBS semivolatile POA treatment underpredicted AMS
hydrocarbon-like OA (HOA) <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> cooking-influenced OA (CIOA) at Pasadena by
a factor of 1.8 compared to a factor of 1.4 overprediction of POA in
CMAQ-AE6, but it did capture the AMS diurnal profile of HOA and CIOA well,
with the exception of the midday peak.</p>
    <p>Overall, the CMAQ-VBS with its semivolatile treatment of POA, SOA from intermediate volatility organic compounds (IVOCs),
and aging of SOA improves SOA model performance (though SOA formation
efficiency is still 1.6–2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> too low). However, continued efforts are
needed to better understand assumptions in the parameterization (e.g., SOA
aging) and provide additional certainty to how best to apply existing
emission inventories in a framework that treats POA as semivolatile, which
currently degrades existing model performance at routine monitoring networks.
The VBS and other approaches (e.g., AE6) require additional work to
appropriately incorporate  IVOC
emissions and subsequent SOA formation.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Organic matter, comprised of primary organic aerosols (POA) and secondary
organic aerosols (SOA), is a ubiquitous component of <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn>2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. For
example, the Los Angeles South Coast Air Basin and San Joaquin Valley are
designated as <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn>2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> nonattainment areas
(<uri>http://www.epa.gov/oaqps001/greenbk/ancl.html</uri>), and major ground sites
for the California at the Nexus of Air Quality and Climate Change (CalNex)
campaign <xref ref-type="bibr" rid="bib1.bibx58" id="paren.1"/> were located within these basins at Pasadena and
Bakersfield, respectively. Forty-one percent of the submicron aerosol mass at
Pasadena was organic during CalNex <xref ref-type="bibr" rid="bib1.bibx31" id="paren.2"/>, and several
complementary measurements of the organics including radiocarbon, SOA tracers, OC <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> EC, organic aerosol (OA) composition,
and volatile organic compounds (VOCs) <xref ref-type="bibr" rid="bib1.bibx75 bib1.bibx6 bib1.bibx31" id="paren.3"/> were collected.</p>
      <p>Measurements have shown SOA is expected to be comparable to or dominate over
POA, even in urban areas close to emission sources <xref ref-type="bibr" rid="bib1.bibx69" id="paren.4"/>. Average
OA O : C ratios exceed 0.3 in southern California <xref ref-type="bibr" rid="bib1.bibx16" id="paren.5"/>,
suggesting significant contributions from SOA, and over 70 % of midday OA
is estimated to be secondary in Riverside, CA <xref ref-type="bibr" rid="bib1.bibx20" id="paren.6"/>, Mexico
City <xref ref-type="bibr" rid="bib1.bibx2" id="paren.7"/>, and Pasadena, CA <xref ref-type="bibr" rid="bib1.bibx35 bib1.bibx31" id="paren.8"/>.</p>
      <p>However, models tend to underestimate anthropogenic SOA from both known and
unknown VOC precursors <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx42 bib1.bibx71" id="paren.9"/>. The
Community Multiscale Air Quality (CMAQ) model <xref ref-type="bibr" rid="bib1.bibx10" id="paren.10"/>, which is used
for research and regulatory purposes, also tends to underpredict SOA in
anthropogenically dominated locations <xref ref-type="bibr" rid="bib1.bibx26 bib1.bibx6" id="paren.11"/>. In CMAQ,
POA is normally treated as nonvolatile <xref ref-type="bibr" rid="bib1.bibx60" id="paren.12"/>, and SOA forms
mostly from gas-phase VOC oxidation to form lower-volatility products with
contributions from cloud processing <xref ref-type="bibr" rid="bib1.bibx13" id="paren.13"/>. Simulations using
this traditional OA treatment in CMAQ (CMAQ-AE6) during CalNex
<xref ref-type="bibr" rid="bib1.bibx6" id="paren.14"/> indicate that predicted OA is dominated by POA with a small
contribution of SOA from aromatic and biogenic VOC oxidation in contrast to
the SOA dominated picture from observations. While anthropogenic parent VOCs
are well represented in the model, secondary organic carbon (SOC) from
aromatics is underestimated <xref ref-type="bibr" rid="bib1.bibx6" id="paren.15"/>. The model is likely missing
sources of fossil carbon and tracer-based apportionment methods for SOC are
unable to capture the total OA concentration. <xref ref-type="bibr" rid="bib1.bibx32" id="text.16"/> indicated the
SOA formed from the oxidation of VOCs alone is insufficient to explain
observed SOA, and primary semivolatile organic compounds (SVOCs)/intermediate volatility organic compounds (IVOCs) are likely needed to explain the observed
mass.</p>
      <p>In recognizing the potential role for S/IVOC emissions to form SOA
<xref ref-type="bibr" rid="bib1.bibx57 bib1.bibx24 bib1.bibx1" id="paren.17"/>, we employ the publicly
available version of the CMAQ-VBS model <xref ref-type="bibr" rid="bib1.bibx46" id="paren.18"/> and compare it to the
standard nonvolatile POA and SOA from VOCs in CMAQ v5.0.2, with a focus on
the 2010 CalNex-LA site in Pasadena, CA. Our analysis focuses on the degree
to which processes and/or sources characterized in CMAQ v5.0.2 may be
responsible for OA observed as part of CalNex. We also identify whether
underestimates in OA from CMAQ are due to emissions/dispersion, photochemical
processing, or the OA treatment.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methodology</title>
<sec id="Ch1.S2.SS1">
  <title>Model application</title>
      <p>The CMAQ model version 5.0.2 was applied to estimate air quality in
California from 4 May to 30 June 2010, which coincides with the CalNex
campaign (May and July 2010). Gas-phase chemistry was simulated with the
Carbon Bond 2005 (CB05) chemical mechanism <xref ref-type="bibr" rid="bib1.bibx68" id="paren.19"/>. Aerosols were
simulated using the traditional aerosol 6 (AE6) module (CMAQ-AE6) and an
alternative version of AE6 which uses the volatility basis set (VBS) approach
<xref ref-type="bibr" rid="bib1.bibx21" id="paren.20"/> to model OA (CMAQ-VBS).</p>
      <p>The model domain covered California and Nevada with a 4 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mrow><mml:mn>317</mml:mn><mml:mo>×</mml:mo><mml:mn>236</mml:mn></mml:mrow></mml:math></inline-formula>) grid resolution (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). The vertical domain
included 34 layers and extended to 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">mb</mml:mi></mml:math></inline-formula>. The first 11 days of the
simulation were treated as a spin-up and results were excluded from the
analysis to minimize the influence of initial conditions.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p>CMAQ-VBS modeling period average (15 May to 30 June 2010)
concentrations of total OA <bold>(a)</bold>, primary organics <bold>(b)</bold>,
anthropogenic SOA <bold>(c)</bold>, and biogenic SOA <bold>(d)</bold>. The black box
indicates the approximate location of Downtown Los Angeles and Pasadena. Note
each plot uses a unique scale.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/4081/2016/acp-16-4081-2016-f01.png"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS2">
  <title>CMAQ-VBS OA treatment</title>
      <p>Details of the VBS treatment of organics in CMAQ are described in
<xref ref-type="bibr" rid="bib1.bibx46" id="text.21"/> and comparisons of the POA and SOA treatments in the
traditional CMAQ-AE6 and CMAQ-VBS and provided in the Supplement (Tables S1
and S2 in the Supplement). Briefly, CMAQ-VBS includes four distinct basis
sets/OA groups: primary anthropogenic (corresponding to hydrocarbon-like OA
(HOA) or POA), secondary anthropogenic (anthropogenic SOA), secondary
biogenic (biogenic SOA), and primary biomass burning (biomass burning OA).
Each of the four basis sets is represented using five bins. Four bins are
used to represent <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> values ranging from 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:math></inline-formula> to
10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and one bin (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>∗</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, which at typical
ambient conditions at Pasadena would represent compounds with
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) represents nonvolatile
particles.</p>
      <p>Traditional CMAQ-AE6 nonvolatile POA is replaced in CMAQ-VBS with
semivolatile POA, referred to here as primary SVOCs, comprised of primary
gas-
and particle-phase organics located in the primary anthropogenic basis set.
In this framework, CMAQ-VBS POA is therefore primary SVOCs located in the
particle phase. Primary SVOCs are aged/oxidized in the gas phase by reactions
with OH using a rate constant of <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">molec</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx57" id="paren.22"/>, with each
oxidation step lowering volatility by an order of magnitude and a portion
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:math></inline-formula> %) of the OA mass shifted from the primary SVOC (POA) to the
secondary SVOC (SOA) set <xref ref-type="bibr" rid="bib1.bibx46" id="paren.23"/>. The transfer of oxidized primary
SVOCs (i.e., POA) to secondary SVOCs (i.e., SOA) is used as a modeling
technique to maintain accurate O : C ratios. This feature of the 1.5-D VBS
<xref ref-type="bibr" rid="bib1.bibx46" id="paren.24"/> uses existing POA and SOA basis sets to avoid additional
computational burden of added model species (e.g., oxidized POA basis set).
With this treatment, the majority (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>90</mml:mn></mml:mrow></mml:math></inline-formula> %) of slightly aged POA
(after a single aging reaction) resides as POA-like while very aged POA
(after four aging reactions) would reside as two-thirds POA and one-third
SOA. We acknowledge that this approach, which prioritizes O : C ratios, adds
uncertainty when model results are compared against aerosol mass spectrometry (AMS) measurements and is
an area where future research is needed to better understand that
uncertainty. At Pasadena, our model predictions indicated <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> % of
modeled OA was comprised of oxidized POA and suggests this approach has only
a small impact in this application.</p>
      <p>CMAQ-VBS also includes a formation pathway of SOA from the oxidation of IVOC
emissions, where IVOCs represent gas-phase compounds with volatilities
between SVOCs and VOCs (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> values ranging from 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula> to
10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Most of these compounds are generally
considered to either be missing from emission inventories entirely or
mischaracterized as non-SOA forming compounds. The inclusion of IVOCs
represents an additional SOA precursor mass introduced into the model
relative to CMAQ-AE6. OH is artificially recycled (i.e., not depleted) in
oxidation reactions of IVOCs and SVOCs (primary and secondary) to prevent
double counting and impacts to the gas-phase chemistry of the underlying
chemical mechanism as these species are likely already represented in the
model (e.g., paraffins, olefins, nonreactive). This technique is
identical to that used by a number of existing CMAQ SOA precursors (e.g.,
benzene and sesquiterpene) in CB05.</p>
      <p>CMAQ-VBS semivolatile SOA is represented using secondary SVOCs (gas and
particle phase) located in the secondary anthropogenic and biogenic basis
sets. SOA yields from VOC precursors are the same as those used
in <xref ref-type="bibr" rid="bib1.bibx54" id="text.25"/> except for toluene <xref ref-type="bibr" rid="bib1.bibx36" id="paren.26"/>. SOA yields
from IVOC precursors are based on the <xref ref-type="bibr" rid="bib1.bibx54" id="text.27"/> yields for the SAPRC
ARO2 model species. ARO2 was used because it represents naphthalene (among
other compounds), where naphthalene has previously been used as a surrogate
to represent IVOCs <xref ref-type="bibr" rid="bib1.bibx56" id="paren.28"/>. Photochemical reactions producing
condensable vapors from aromatics (toluene, xylene, and benzene), isoprene,
and monoterpenes utilize distinct high- and low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> yields (determined
using R<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> NO or R<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">HO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) while
sesquiterpenes and IVOCs do not (IVOC <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> dependence excluded due
to a lack of experimental data).</p>
      <p>While experimental data suggest that aging of both anthropogenic
SOA <xref ref-type="bibr" rid="bib1.bibx36" id="paren.29"/> and biogenic SOA <xref ref-type="bibr" rid="bib1.bibx23" id="paren.30"/> occurs, in
CMAQ-VBS only anthropogenic SOA (formed from both VOCs and IVOCs) is aged via
reactions of the gas-phase semivolatiles with OH using a rate constant of <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">molec</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (twice the rate
previously assumed for anthropogenic SOA aging; <xref ref-type="bibr" rid="bib1.bibx54" id="altparen.31"/>) and based
on results from the 2-D VBS <xref ref-type="bibr" rid="bib1.bibx22" id="paren.32"/>. Anthropogenic aging
reactions form products with a vapor pressure reduced by 1 order of
magnitude (10 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>) for each oxidation step. Biogenic aging is turned
off in CMAQ-VBS by default as previous results, using a more conservative
aging scheme than in CMAQ-VBS, indicated the VBS overpredicted OA in rural
areas when biogenic SOA was aged <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx54 bib1.bibx27" id="paren.33"/>.
In recognizing that the aging of biogenic SOA does occur, we perform a sensitivity
simulation that includes secondary biogenic SVOC aging reactions, the results of which are
presented in Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS2"/>. In excluding aging of secondary
biogenic SVOCs in all but our sensitivity simulation, we effectively assume
that the net result of functionalization (aging) and fragmentation, an
important process for accurate predictions of biogenic SOA
<xref ref-type="bibr" rid="bib1.bibx23" id="paren.34"/>, does not increase biogenic SOA concentrations
<xref ref-type="bibr" rid="bib1.bibx27" id="paren.35"/>.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Emissions</title>
      <p>United States anthropogenic emissions were based on version 1 of the 2011
National Emissions Inventory (NEI) <xref ref-type="bibr" rid="bib1.bibx64" id="paren.36"/>. Stationary point sources
reporting continuous emissions monitor data were modeled with day- and
hour-specific emissions matching the simulation period. Wildfire emissions
were day-specific although have little impact in Pasadena during this time
period <xref ref-type="bibr" rid="bib1.bibx4 bib1.bibx31" id="paren.37"/>. Biogenic emissions were day- and hour-specific using Weather Research Forecast (WRF) model temperature and solar
radiation as input to the Biogenic Emission Inventory (BEIS) version 3.14
model <xref ref-type="bibr" rid="bib1.bibx12" id="paren.38"/>. Anthropogenic emissions from Mexico were projected
to 2010 from 1999 <xref ref-type="bibr" rid="bib1.bibx65" id="paren.39"/>. All emissions were processed for input to
CMAQ using the Sparse Matrix Operator Kernel Emissions (SMOKE) modeling
system <xref ref-type="bibr" rid="bib1.bibx39" id="paren.40"/>.</p>
      <p>CMAQ-VBS internally estimates SVOC and IVOC emissions at runtime based on
traditional POA emission inventories. In the configuration used here, SVOC
emissions are equivalent to the POA emissions input, i.e., no scaling of POA
is applied to calculate SVOC emissions. We base this on the assumption that
NEI POA measurements are made at high concentrations and therefore all SVOCs
are partitioned to the particle phase. Therefore, the total mass of SVOC
(gas-
and particle-phase) emissions are equal to traditional POA emissions. IVOC
emissions are estimated as 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> SVOCs <xref ref-type="bibr" rid="bib1.bibx57" id="paren.41"/>, or
1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> the traditional POA emission inventory. Although most modeling
studies set IVOCs <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> SVOCs, the total amount of material
introduced into the model varies depending on the study and leads to varying
importance of SOA from S/IVOCs vs. VOCS in different simulations. For
example, in the box modeling studies of <xref ref-type="bibr" rid="bib1.bibx24" id="text.42"/> and
<xref ref-type="bibr" rid="bib1.bibx32" id="text.43"/> the POA was set equal to the measured HOA,  the SVOCs
were calculated from equilibrium partitioning using the <xref ref-type="bibr" rid="bib1.bibx57" id="text.44"/>
volatility distribution, and then IVOC were set to 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> SVOC. In
grid-based model studies examining Mexico City OA <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx63 bib1.bibx59" id="paren.45"/>, the POA emission inventory was assumed to
represent the fraction of aerosol remaining after evaporation of semivolatile
emissions based on comparisons with observations; therefore SVOC emissions
were set to 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> traditional POA emissions and IVOC emissions were
set to 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> SVOC emissions, leading to a total of S/IVOC <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 7.5
traditional POA. Therefore, modeled S/IVOC emissions can range from 2.5 to
7.5<inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> existing POA inventories to match measurements (which makes
direct comparisons to existing inventories difficult) and remain a source of
uncertainty in conducting and comparing models that include S/IVOCs.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p>CMAQ-VBS volatility distribution of POA emissions from gasoline
vehicles, diesel vehicles, biomass burning, nonvolatile (e.g., fugitive
dust), meat cooking, and “other” sources.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.91}[.91]?><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Source</oasis:entry>  
         <oasis:entry colname="col2">Nonvolatile<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6">10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Gas vehicles (GV)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.27</oasis:entry>  
         <oasis:entry colname="col3">0.15</oasis:entry>  
         <oasis:entry colname="col4">0.26</oasis:entry>  
         <oasis:entry colname="col5">0.15</oasis:entry>  
         <oasis:entry colname="col6">0.17</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Diesel vehicles (DV)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.03</oasis:entry>  
         <oasis:entry colname="col3">0.25</oasis:entry>  
         <oasis:entry colname="col4">0.37</oasis:entry>  
         <oasis:entry colname="col5">0.24</oasis:entry>  
         <oasis:entry colname="col6">0.11</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Biomass burning (BB)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.20</oasis:entry>  
         <oasis:entry colname="col3">0.10</oasis:entry>  
         <oasis:entry colname="col4">0.10</oasis:entry>  
         <oasis:entry colname="col5">0.20</oasis:entry>  
         <oasis:entry colname="col6">0.40</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Nonvolatile (NV)</oasis:entry>  
         <oasis:entry colname="col2">1.00</oasis:entry>  
         <oasis:entry colname="col3">0.00</oasis:entry>  
         <oasis:entry colname="col4">0.00</oasis:entry>  
         <oasis:entry colname="col5">0.00</oasis:entry>  
         <oasis:entry colname="col6">0.00</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Meat cooking (MC)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">e</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.35</oasis:entry>  
         <oasis:entry colname="col3">0.35</oasis:entry>  
         <oasis:entry colname="col4">0.10</oasis:entry>  
         <oasis:entry colname="col5">0.10</oasis:entry>  
         <oasis:entry colname="col6">0.10</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Other (OP)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.09</oasis:entry>  
         <oasis:entry colname="col3">0.09</oasis:entry>  
         <oasis:entry colname="col4">0.14</oasis:entry>  
         <oasis:entry colname="col5">0.18</oasis:entry>  
         <oasis:entry colname="col6">0.50</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><?xmltex \begin{scaleboxenv}{.93}[.93]?><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>∗</mml:mo></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> in the
nonvolatile bin, which at typical ambient conditions at Pasadena would
represent compounds with
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx50" id="text.46"/>. <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx51" id="text.47"/>.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx49" id="text.48"/>. <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">e</mml:mi></mml:msup></mml:math></inline-formula> Estimated from
<xref ref-type="bibr" rid="bib1.bibx41" id="text.49"/>. <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">f</mml:mi></mml:msup></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx57" id="text.50"/>.</p></table-wrap-foot><?xmltex \end{scaleboxenv}?></table-wrap>

      <p>The volatility split of SVOC emissions in CMAQ-VBS is provided in
Table <xref ref-type="table" rid="Ch1.T1"/>. By default, CMAQ-VBS assigns volatility
distributions for POA emissions from gasoline vehicles, diesel vehicles, biomass burning, nonvolatile sources, and “other” sources
(e.g., point, industrial, and area sources). In the absence of source-specific POA emissions, the “other” profile is used. In our application,
a significant portion of POA was associated with meat cooking activities
(Table <xref ref-type="table" rid="Ch1.T2"/>), which thermodenuder data suggest is of lower
volatility compared to the other CMAQ-VBS source-specific POA categories
<xref ref-type="bibr" rid="bib1.bibx41" id="paren.51"/>. We approximated a new volatility distribution for meat
cooking SVOC emissions (Table <xref ref-type="table" rid="Ch1.T1"/>) based on comparisons of
meat cooking and the MILAGRO average biomass burning thermodenuder-measured
volatility <xref ref-type="bibr" rid="bib1.bibx41" id="paren.52"/>. This is meant as a first approximation and
represents an area where further research is needed. We note that thermodenuder
data provide some constraints on SVOCs but no constraints on IVOCs;
therefore the IVOC emissions from meat cooking remained unchanged
(1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> of meat cooking POA emissions).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p>Domain and modeling period (4 May to 30 June 2010) total 2011 NEI
POA emissions (tons) for gasoline vehicles, diesel vehicles, biomass burning,
nonvolatile (e.g., fugitive dust), meat cooking, and “other” sources.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Source</oasis:entry>  
         <oasis:entry colname="col2">Emissions (t)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Gas vehicles (GV)</oasis:entry>  
         <oasis:entry colname="col2">1990</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Diesel vehicles (DV)</oasis:entry>  
         <oasis:entry colname="col2">800</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Biomass burning (BB)</oasis:entry>  
         <oasis:entry colname="col2">8550</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Nonvolatile (NV)</oasis:entry>  
         <oasis:entry colname="col2">540</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Meat cooking (MC)</oasis:entry>  
         <oasis:entry colname="col2">1470</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Other (OP)</oasis:entry>  
         <oasis:entry colname="col2">2070</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2.SS4">
  <title>Sensitivity simulations</title>
      <p>In addition to evaluating the publicly available version of CMAQ-VBS, we
performed a number of sensitivity simulations to examine the importance of OA
sources in the model. For example, after input into CMAQ-VBS, anthropogenic
POA emission source specificity is lost as anthropogenic POA is lumped into
a single basis set. In order to leverage our source-specific emission inputs,
basis sets for POA from gasoline vehicles, diesel vehicles, and meat cooking
activities were added to provide anthropogenic POA source apportionment
(Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS1"/>).</p>
      <p>To evaluate how model predictions change with varying S/IVOC emissions,
sensitivity simulations were conducted with primary SVOC emissions scaled by
1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, and 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> the NEI POA mass
(Sects. <xref ref-type="sec" rid="Ch1.S3.SS2.SSS2"/> and <xref ref-type="sec" rid="Ch1.S3.SS2.SSS3"/>). In each case, IVOC emissions were
1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> of SVOC emissions, corresponding to factors of 2.25 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>,
3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, and 4.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> NEI POA mass. The range of values are based
on an assumption that the POA inventory is estimated before (3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>) or
after (1 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>) partitioning at ambient conditions (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>30</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) and represents lower and upper bounds of scaling
factors used in previous studies <xref ref-type="bibr" rid="bib1.bibx57 bib1.bibx24" id="paren.53"><named-content content-type="pre">e.g.,</named-content></xref>.</p>
      <p>Another set of sensitivity simulations quantified VBS SOA contributions from
first-product oxidation of VOCs (i.e., no aging), anthropogenic and biogenic
SVOC aging, and IVOCs (Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS2"/>). In sensitivity simulations
with aging of secondary biogenic SVOCs we also quantified in-basin vs. out-of-basin contributions at Pasadena from biogenic SOA precursor emissions by
removing LA basin biogenic SOA precursors.</p>
      <p>Lastly, given the tendency for regional air quality
studies <xref ref-type="bibr" rid="bib1.bibx66 bib1.bibx19" id="paren.54"/>, including CMAQ <xref ref-type="bibr" rid="bib1.bibx26 bib1.bibx6" id="paren.55"/>, to underpredict anthropogenic SOA in urban areas, we evaluated a
simplified SOA parameterization (SIMPLE) <xref ref-type="bibr" rid="bib1.bibx37 bib1.bibx32" id="paren.56"/>.
SIMPLE represents an alternative SOA modeling approach to the CMAQ-AE6 and
CMAQ-VBS SOA treatments (Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS3"/>) and has been shown to
perform well for SOA predictions at Pasadena <xref ref-type="bibr" rid="bib1.bibx32" id="paren.57"/> and for OA
predictions in the southeastern USA <xref ref-type="bibr" rid="bib1.bibx44" id="paren.58"/>.</p>
</sec>
<sec id="Ch1.S2.SS5">
  <title>Meteorology, boundary, and initial conditions</title>
      <p>Gridded meteorological variables used for input to CMAQ and SMOKE were
generated using version 3.1 of the WRF model, Advanced Research WRF core
<xref ref-type="bibr" rid="bib1.bibx61" id="paren.59"/>. Details regarding the WRF configuration and
application are provided elsewhere <xref ref-type="bibr" rid="bib1.bibx5" id="paren.60"/>. In general, surface
meteorology and daytime mixing layer heights were well represented for this
period in California. A 36 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> CMAQ simulation covering the
continental United States for the same time period was used to generate
boundary conditions for this simulation. A global GEOS-CHEM (v8-03-02)
<xref ref-type="bibr" rid="bib1.bibx7" id="paren.61"/> simulation provided boundary inflow for the 36 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>
continental-scale CMAQ simulation <xref ref-type="bibr" rid="bib1.bibx33" id="paren.62"/>. Neither larger-scale
simulation included CMAQ-VBS OA species, though the impact is likely small as
a CMAQ-AE6 sensitivity simulation indicated most (99 %) of the OA at
Pasadena originates from local or regional sources located in our modeling
domain.</p>
</sec>
<sec id="Ch1.S2.SS6">
  <title>Measurements</title>
      <p>Ground-based CalNex measurements were collected in Pasadena, CA, from 15 May
to 15 June 2010 <xref ref-type="bibr" rid="bib1.bibx58" id="paren.63"/>. The Pasadena sampling site was located
on the California Institute of Technology campus, northeast of the Los
Angeles metropolitan area and south of the San Gabriel Mountains. Both
filter-based carbon measurements and AMS PM
measurements were collected at this site. The filter-based measurements
provide 23 h average concentrations of organic carbon, elemental carbon, and
total carbon as well as the non-fossil vs. fossil carbon fraction. When
compared against the filter-based and routine monitoring network (Chemical Speciation Network (CSN) and
Interagency Monitoring of Protected Visual Environments (IMPROVE)) measurements of OC, CMAQ-VBS OA is converted to OC using OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> OC
ratios reported in <xref ref-type="bibr" rid="bib1.bibx46" id="text.64"/>. Additional details of the filter-based
measurements, including comparisons of those measurements against traditional
CMAQ (CMAQ-AE6) results, can be found in <xref ref-type="bibr" rid="bib1.bibx6" id="text.65"/>. The AMS data
provide real-time (sub-hourly) measurements of speciated sub-micron PM,
including various organic components as determined using positive matrix
factorization (PMF). The AMS organic components resolved at the site include
two types of SOA (semivolatile oxygenated OA (SV-OOA) consistent with fresher
SOA mostly from urban areas, and low-volatility oxygenated OA (LV-OOA)
consistent with aged SOA), two types of POA HOA and
cooking-influenced OA (CIOA)), and local OA (LOA). The source of LOA, which
accounts for approximately 5 % of OA mass at Pasadena, is generally
unknown, though large fluctuations in measured concentrations suggest a local
source <xref ref-type="bibr" rid="bib1.bibx31" id="paren.66"/>. When comparisons using both AMS and the
filter-based OC measurements are made, AMS OA is converted to OC using
OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> OC ratios reported in <xref ref-type="bibr" rid="bib1.bibx31" id="text.67"/>. Additional details
regarding the AMS measurements and PMF component analysis can be found in
<xref ref-type="bibr" rid="bib1.bibx31" id="text.68"/>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p>CMAQ-VBS and CMAQ-AE6 organic carbon (OC) and elemental carbon (EC)
model predictions evaluated against routine modeling network sites in the
modeling domain (IMPROVE and CSN). Evaluation metrics include median bias
(MdnB<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula>), median error (MdnE<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula>), normalized median
bias (NMdnB<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula>), and normalized median error
(NMdnE<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula>).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">OA treatment/</oasis:entry>  
         <oasis:entry colname="col2">Network</oasis:entry>  
         <oasis:entry colname="col3">Mean obs.</oasis:entry>  
         <oasis:entry colname="col4">Mean model</oasis:entry>  
         <oasis:entry colname="col5">MdnB</oasis:entry>  
         <oasis:entry colname="col6">MdnE</oasis:entry>  
         <oasis:entry colname="col7">NMdnB</oasis:entry>  
         <oasis:entry colname="col8">NMdnE</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">species</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col5">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col6">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col7">(%)</oasis:entry>  
         <oasis:entry colname="col8">(%)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">CMAQ-VBS</oasis:entry>  
         <oasis:entry colname="col2">IMPROVE (247)</oasis:entry>  
         <oasis:entry colname="col3">0.71</oasis:entry>  
         <oasis:entry colname="col4">0.23</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.38</oasis:entry>  
         <oasis:entry colname="col6">0.38</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>63.9</oasis:entry>  
         <oasis:entry colname="col8">64.6</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">OC</oasis:entry>  
         <oasis:entry colname="col2">CSN (159)</oasis:entry>  
         <oasis:entry colname="col3">1.26</oasis:entry>  
         <oasis:entry colname="col4">0.75</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.31</oasis:entry>  
         <oasis:entry colname="col6">0.44</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25.5</oasis:entry>  
         <oasis:entry colname="col8">36.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CMAQ-AE6</oasis:entry>  
         <oasis:entry colname="col2">IMPROVE (247)</oasis:entry>  
         <oasis:entry colname="col3">0.71</oasis:entry>  
         <oasis:entry colname="col4">0.29</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.33</oasis:entry>  
         <oasis:entry colname="col6">0.34</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>55.7</oasis:entry>  
         <oasis:entry colname="col8">57.6</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">OC</oasis:entry>  
         <oasis:entry colname="col2">CSN  (159)</oasis:entry>  
         <oasis:entry colname="col3">1.26</oasis:entry>  
         <oasis:entry colname="col4">1.22</oasis:entry>  
         <oasis:entry colname="col5">0.12</oasis:entry>  
         <oasis:entry colname="col6">0.71</oasis:entry>  
         <oasis:entry colname="col7">9.9</oasis:entry>  
         <oasis:entry colname="col8">43.9</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CMAQ-VBS</oasis:entry>  
         <oasis:entry colname="col2">IMPROVE (249)</oasis:entry>  
         <oasis:entry colname="col3">0.10</oasis:entry>  
         <oasis:entry colname="col4">0.09</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.02</oasis:entry>  
         <oasis:entry colname="col6">0.03</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>20.3</oasis:entry>  
         <oasis:entry colname="col8">40.8</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">EC</oasis:entry>  
         <oasis:entry colname="col2">CSN (159)</oasis:entry>  
         <oasis:entry colname="col3">0.33</oasis:entry>  
         <oasis:entry colname="col4">0.58</oasis:entry>  
         <oasis:entry colname="col5">0.24</oasis:entry>  
         <oasis:entry colname="col6">0.26</oasis:entry>  
         <oasis:entry colname="col7">81.4</oasis:entry>  
         <oasis:entry colname="col8">87.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CMAQ-AE6</oasis:entry>  
         <oasis:entry colname="col2">IMPROVE (249)</oasis:entry>  
         <oasis:entry colname="col3">0.10</oasis:entry>  
         <oasis:entry colname="col4">0.10</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.01</oasis:entry>  
         <oasis:entry colname="col6">0.03</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>13.4</oasis:entry>  
         <oasis:entry colname="col8">40.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">EC</oasis:entry>  
         <oasis:entry colname="col2">CSN (159)</oasis:entry>  
         <oasis:entry colname="col3">0.33</oasis:entry>  
         <oasis:entry colname="col4">0.60</oasis:entry>  
         <oasis:entry colname="col5">0.25</oasis:entry>  
         <oasis:entry colname="col6">0.27</oasis:entry>  
         <oasis:entry colname="col7">83.3</oasis:entry>  
         <oasis:entry colname="col8">89.4</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula> MdnB <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mtext>median</mml:mtext><mml:mo>(</mml:mo><mml:mtext>model</mml:mtext><mml:mo>-</mml:mo><mml:mtext>obs</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mi>N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> MdnE <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mtext>median</mml:mtext><mml:mo>(</mml:mo><mml:mo>|</mml:mo><mml:mtext>model</mml:mtext><mml:mo>-</mml:mo><mml:mtext>obs</mml:mtext><mml:mo>|</mml:mo><mml:msub><mml:mo>)</mml:mo><mml:mi>N</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula> NMdnB <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mtext>median</mml:mtext><mml:mo>(</mml:mo><mml:mtext>model</mml:mtext><mml:mo>-</mml:mo><mml:mtext>obs</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mi>N</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mtext>median</mml:mtext><mml:mo>(</mml:mo><mml:mtext>obs</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mi>N</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula> %.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula> NMdnE <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:mtext>median</mml:mtext><mml:mo>(</mml:mo><mml:mo>|</mml:mo><mml:mtext>model</mml:mtext><mml:mo>-</mml:mo><mml:mtext>obs</mml:mtext><mml:mo>|</mml:mo><mml:msub><mml:mo>)</mml:mo><mml:mi>N</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mtext>median</mml:mtext><mml:mo>(</mml:mo><mml:mtext>obs</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mi>N</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>×</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula> %.</p></table-wrap-foot></table-wrap>

<?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <title>Comparison against routine monitoring networks</title>
      <p>Average OA concentrations predicted by CMAQ-VBS during 15 May to
30 June were highest in the Greater Los Angeles Area where the domain
maximum concentration was
3.1 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). In this region,
OA was approximately 30–50 % of total modeled <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">PM</mml:mi><mml:mn>2.5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
was generally evenly split between primary and secondary
(i.e., SOA comprised 40–60 % of OA). In contrast, CMAQ-AE6
predicted the majority (80–90 %) of OA was comprised of POA in
LA. The shift from primary dominated to a more even primary/secondary
split in CMAQ-VBS is due to both the semivolatile treatment of POA
(lowering POA concentrations) and additional SOA formation pathways
(SOA from IVOCs and SOA aging as discussed in
Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS2"/>).</p>
      <p>Model performance comparisons at IMPROVE and CSN sites in California and
Nevada indicated CMAQ-VBS underpredicted OC (Table <xref ref-type="table" rid="Ch1.T3"/>).
Model performance for OC was slightly degraded (i.e., greater underprediction)
compared to CMAQ-AE6 predictions (Table <xref ref-type="table" rid="Ch1.T3"/>). While
CMAQ-VBS predicted higher concentrations of SOA due to additional SOA
formation pathways (see Table S2 in the Supplement), including the
introduction of IVOCs mass into the modeling system, the additional SOA
production did not compensate enough for the evaporated POA resulting in
degraded performance relative to routine network measurements.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p><bold>(a)</bold> Modeled and measured (EPA filter-based
and AMS) 23 h average OC and <bold>(b)</bold> hourly modeled and AMS-measured OA at Pasadena.
AMS measurements in <bold>(a)</bold> were converted to OC using OM to OC ratios
reported in <xref ref-type="bibr" rid="bib1.bibx31" id="text.69"/> and include only days with <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>16</mml:mn></mml:mrow></mml:math></inline-formula> hourly
measurements (i.e., 18, 20–26, 28, and 29 May
are excluded due to missing measurements).</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/4081/2016/acp-16-4081-2016-f02.pdf"/>

        </fig>

      <p>The degraded OC model performance (with the exception of slightly
improved error) was more evident at CSN sites, which are often located
closer to anthropogenic emission sources. At those sites, CMAQ-AE6 OC
normalized median bias (NMdnB) and error (NMdnE) were 9.9 and
43.9 % compared to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25.5 and 36.5 % in CMAQ-VBS. At IMPROVE
sites, CMAQ-AE6 NMdnB and NMdnE (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>55.7 and 57.6 %) were
comparable to CMAQ-VBS values (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>63.9 and 64.6 %), with the
negative bias indicating both consistently underpredicted OC.</p>
      <p>CMAQ-VBS also underpredicted OC compared to filter-based and AMS measurements
at the Pasadena CalNex site, (Fig. <xref ref-type="fig" rid="Ch1.F2"/>). CMAQ-VBS OC
predictions were approximately 2 to 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> lower than measured OC, with
the largest differences in modeled to measured OA mass generally occurring
during photochemically active periods (e.g., 4 to 7 June) when OOA
concentrations were higher (Fig. <xref ref-type="fig" rid="Ch1.F3"/>), suggesting the model
underpredicts SOA.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>Hourly AMS-measured (CIOA obs) and CMAQ-VBS predicted (CIOA mod)
meat cooking POA (top), hydrocarbon-like OA (HOA) and ncPOA (middle), and OOA
(SV-OOA <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> LV-OOA) and SOA (bottom) at Pasadena.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/4081/2016/acp-16-4081-2016-f03.pdf"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Diurnal profile of AMS-measured PMF OA components against
CMAQ-VBS <bold>(a, b)</bold> and CMAQ-AE6 <bold>(c, d)</bold> predictions at
Pasadena.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/4081/2016/acp-16-4081-2016-f04.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <title>Comparison against CalNex measurements at Pasadena</title>
      <p>Figures <xref ref-type="fig" rid="Ch1.F3"/> and <xref ref-type="fig" rid="Ch1.F4"/> compare CMAQ-VBS
results against AMS-measured submicron OA PMF components, where
CMAQ-VBS POA from meat cooking sources was compared against AMS CIOA,
CMAQ-VBS POA from all other sources including motor vehicles (referred to here as non-cooking POA or ncPOA) was
compared against AMS HOA, and CMAQ-VBS SOA was compared against AMS
SV-OOA <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> LV-OOA. Additional AMS measurements of LOA and CMAQ-VBS
biomass burning OA from residential wood combustion are included in Fig. <xref ref-type="fig" rid="Ch1.F4"/>, but
these measurements/model results do not have a direct corresponding
AMS/model value.</p>
<sec id="Ch1.S3.SS2.SSS1">
  <title>Meat cooking OA</title>
      <p>CMAQ-VBS CIOA concentrations averaged 0.65 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (28 %
of modeled OA) at Pasadena during the modeling period with a diurnal profile
that was generally flat throughout the day and peaked at night. This is
compared to an average AMS CIOA concentration of
1.22 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (17 % of measured OA) and a diurnal profile
that peaked in the afternoon and at night, slightly later than typical
mealtimes and likely due to transport time <xref ref-type="bibr" rid="bib1.bibx31" id="paren.70"/>. The AMS diurnal
profile at Pasadena is consistent with AMS measurements from several major
urban areas, including Barcelona, Beijing, London, Manchester, New York City,
and Paris <xref ref-type="bibr" rid="bib1.bibx3 bib1.bibx40 bib1.bibx62 bib1.bibx52 bib1.bibx28" id="paren.71"/>.
CMAQ-VBS generally compared well to AMS measurements in the morning but
underpredicted the afternoon peak by 3.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> and evening peak by
2.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>.</p>
      <p>To determine whether partitioning alone explained the underprediction in modeled
midday CIOA concentrations, we considered two potential scenarios. In the
first scenario, we removed model OA bias by replacing modeled OA with AMS-measured OA and then calculated the theoretical partitioning of modeled
semivolatile CIOA vapors. Using the higher AMS OA concentrations, more
semivolatile CIOA vapors partitioned to the particle phase and increased
modeled CIOA concentrations by approximately 10 % in the afternoon. In
the second scenario, we treated the modeled CIOA as nonvolatile (100 % of
emissions in the particle phase). Model concentrations increased by
30–40 % and generally improved model performance (<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>32 % normalized
median bias compared to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>51 % in the semivolatile treatment). However,
the modeled CIOA still underpredicted the afternoon and evening peaks by
2.9 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> and 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, respectively.</p>
      <p>Even a nonvolatile treatment was unable to reproduce the measured peaks,
suggesting the model CIOA emissions were low, particularly during afternoon
and evening hours. This is expected since the 2011 emission inventory
excludes residential meat cooking and the inclusion of these emissions would
ameliorate some of the underprediction bias in evening hours and on weekends.
To account for missing residential meat cooking emissions and potential
underestimates in commercial meat cooking emissions, a doubling of CIOA
emissions did well to reproduce the averaged measured value
(1.28 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> modeled vs.
1.22 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> measured). However, the diurnal profile applied
in SMOKE to the majority of CIOA emissions (profile 26) is a low-arcing
profile that peaks at 15:00 LST (see Fig. S1 in the Supplement). Additional
mass of emissions applied to this profile helped to capture average CIOA and
improved underpredictions of the evening peak (lowered from 2.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> to
1.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>) but overpredicted measurements in the morning and maintained
the underprediction of afternoon AMS-measured CIOA (Fig. S2), suggesting some
morning emissions should be reallocated to occur in the afternoon. It is also
possible that some of the measured CIOA peak was due to photochemistry, as
the afternoon peak coincides with the peak in AMS SV-OOA.</p>
      <p>The highest observed CIOA value (8.9 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) occurred on
30 May at 20:00 LST, which corresponds to the Saturday of the Memorial Day weekend. Results from <xref ref-type="bibr" rid="bib1.bibx75" id="text.72"/>, who reported a high
non-fossil fraction of OA at the CalNex site on 30 May, corroborate the AMS
data. SMOKE/CMAQ emission processing does not allocate more emissions to
holidays like Memorial Day for meat cooking, when a larger number of people
grill meat and emissions are likely to be higher than normal. Therefore, we
would not expect CMAQ to reproduce such events. When the CIOA measurements
during the Memorial Day weekend were excluded, the midday and evening AMS
peaks were reduced by 0.2 and 0.5 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, respectively, which
corresponds to CMAQ-VBS underpredictions of 3.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> and 2.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>
(or 2.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> and 1.6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> for nonvolatile emissions and
1.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> and 1 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> for a doubling of CIOA emissions).</p>
      <p>Given that the majority of both modeled and measured POA at Pasadena was
attributable to cooking sources, further evaluation of the total CIOA
emissions as well as the diurnal profile and volatility distribution applied
to those emissions may help to improve POA model performance in urban areas.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS2">
  <title>Non-cooking POA</title>
      <p>Generally, CMAQ-VBS ncPOA results compared reasonably well
against AMS HOA measurements (Fig. <xref ref-type="fig" rid="Ch1.F4"/>) in total magnitude,
particularly during morning and evening hours. However, modeled ncPOA was
biased low, more so in the afternoon. The modeled ncPOA underpredicted the
AMS HOA peak (which occurred at 14:00 LST) by a factor of 3 compared to
underpredictions of 7–55 % (average of 31 %) during morning
(00:00–10:00 LST) and evening (19:00–23:00 LST) hours. The modeled ncPOA
peak instead occurred at night (likely due to the collapse of the planetary
boundary layer), which did correspond to a measured evening peak offset by
<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> h.</p>
      <p>We calculated that when modeled OA concentrations were increased to match
measured OA, partitioning of SVOCs increased ncPOA concentrations by
20 %. The 20 % increase in modeled ncPOA corresponded to a
2.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> underprediction of afternoon ncPOA, with little change to
morning and evening performance. When ncPOA was instead treated as
nonvolatile, the model overpredicted AMS measurements in the morning and
evening (by 1.5 to 1.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>) and underpredicted measurements in the
afternoon (by 1.5 to 1.6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>). The resulting diurnal pattern (Fig. S3)
was higher in the morning and evening, with a minimum in the afternoon,
similar to the more muted diurnal pattern of the semivolatile treatment
(Fig. <xref ref-type="fig" rid="Ch1.F4"/>a) but opposite the AMS measurements (lower in the
morning and evening, peaked in the afternoon).</p>
      <p>While neither ncPOA volatility treatment captured the afternoon peak in
measured ncPOA, the semivolatile treatment predictions during morning and
evening hours suggest it to be the more appropriate model representation of
the two. However, further considerations are needed to better account for the
AMS-measured midday peak in ncPOA. The measured HOA peak followed a similar
pattern to OOA both in the diurnal profile (Fig. <xref ref-type="fig" rid="Ch1.F4"/>) and on an
hourly basis (Fig. <xref ref-type="fig" rid="Ch1.F3"/>), which may suggest that
photochemistry served a role in the measured HOA peak as additional OA mass
attributed to photochemistry could promote partitioning of semivolatile HOA
to the particle phase. However, photochemical age and CO are correlated at
this location due to the arrival of downtown LA plume in the early afternoon,
so the observed correlation should not be over-interpreted. Alternative aging
schemes to the <xref ref-type="bibr" rid="bib1.bibx57" id="text.73"/> approach used in CMAQ-VBS, such as those
proposed by <xref ref-type="bibr" rid="bib1.bibx30" id="text.74"/> and <xref ref-type="bibr" rid="bib1.bibx56" id="text.75"/>, generally produce more
OA mass than the <xref ref-type="bibr" rid="bib1.bibx57" id="text.76"/> scheme and if applied to primary SVOCs
could better represent the ncPOA midday peak <xref ref-type="bibr" rid="bib1.bibx32" id="paren.77"/> assuming the
majority of aged primary SVOCs (i.e., oxidized POA) remains as primary
SVOCs/POA. These alternative aging schemes may also degrade the morning and
evening performance, though <xref ref-type="bibr" rid="bib1.bibx32" id="text.78"/> found the <xref ref-type="bibr" rid="bib1.bibx30" id="text.79"/>
scheme performed reasonably well throughout the day.</p>
      <p>Average CMAQ-VBS ncPOA concentrations were approximately a factor of 1.6
lower than AMS-measured HOA values at Pasadena (0.51 vs.
0.83 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). Increasing the CMAQ-VBS ncPOA emissions by
a factor of 1.5 produced average modeled ncPOA concentrations
(0.78 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) comparable to the AMS-measured HOA, though the
model overpredicted HOA in the morning and evening and underpredicted HOA in
the afternoon (Fig. S4). The factor of 1.5–2 underprediction in ncPOA and
CIOA, respectively, is similar to the 1.6–2.3 underprediction attributed to
low emissions or excessive dispersion for SOA at the Pasadena site
(Sect. <xref ref-type="sec" rid="Ch1.S3.SS2.SSS3"/>). If the underprediction were entirely attributable to
emissions, these results would suggest that the 2011 NEI underestimates
non-cooking-related SVOCs by <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>1.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> and cooking-related SVOCs
by <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, and therefore our SVOCs emissions are approximately 1.5
to 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> lower than those estimated using measured HOA at Pasadena
in <xref ref-type="bibr" rid="bib1.bibx32" id="text.80"/>. However, further work is needed to quantify the role of
emissions vs. transport in CMAQ at the Pasadena site.</p>
      <p>A source of uncertainty in the ncPOA results is the volatility distribution
used for industrial, point, and area sources (i.e., “other” sources) which
is based on measurements made from diesel generator exhaust
<xref ref-type="bibr" rid="bib1.bibx57" id="paren.81"/>. However, we assume that this has less impact on ncPOA
predictions than missing emissions since the nonvolatile ncPOA treatment
underpredicted the measurements and ncPOA from these sources only comprises
13 % of total modeled POA (or 25 % of ncPOA
(Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS1"/>)).</p>
</sec>
<sec id="Ch1.S3.SS2.SSS3">
  <title>SOA</title>
      <p>Similar to the routine measurement comparisons of total OC, CMAQ-VBS
underpredicted AMS OOA (SV-OOA <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> LV-OOA) (Fig. <xref ref-type="fig" rid="Ch1.F4"/>b). This
is consistent with many regional air quality studies <xref ref-type="bibr" rid="bib1.bibx66 bib1.bibx19" id="paren.82"/>, including CMAQ <xref ref-type="bibr" rid="bib1.bibx26" id="paren.83"/>, which often underpredict urban
SOA. Although those studies are not specific to LA, the similarity of
tracer-normalized SOA concentrations across urban areas
<xref ref-type="bibr" rid="bib1.bibx18 bib1.bibx17 bib1.bibx32 bib1.bibx70" id="paren.84"><named-content content-type="pre">e.g.,</named-content></xref> supports the
occurrence of a general urban SOA underprediction with models. Other
regional models that use high S/IVOC emissions to approximately match the
observed POA do match or even exceed the urban observations
(e.g., <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx59" id="altparen.85"/>), though we found this not to be
the case in CMAQ-VBS. The diurnal pattern of CMAQ-VBS SOA is generally more
consistent with measurements of SV-OOA compared to LV-OOA
(Fig. <xref ref-type="fig" rid="Ch1.F4"/>). The fact that LV-OOA is heavily oxidized and has
relatively constant concentrations suggests that it is a background source,
comprised of OA formed elsewhere and transported to
Pasadena <xref ref-type="bibr" rid="bib1.bibx32" id="paren.86"/>. Note, the diurnal profile of CMAQ-AE6 SOA
(Fig. <xref ref-type="fig" rid="Ch1.F4"/>) formed from particle oligomerization (a process not
included in CMAQ-VBS) did follow a similar pattern to AMS LV-OOA (relatively
flat throughout the day with a midday/afternoon bimodal peak) but model
concentrations were significantly (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>40</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>) lower (Fig. S5).</p>
      <p>CMAQ-VBS predicted considerably more SOA mass than CMAQ-AE6 (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>0.9</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> at Pasadena in CMAQ-VBS compared to <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>0.2</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for CMAQ-AE6). Overall, CMAQ-VBS SOA diurnal
concentrations were approximately 4 to 5.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> lower than the AMS OOA,
with the largest underestimate corresponding to the peak AMS measurement
(13:00 LST). The underprediction could be attributed to low emissions, low
photochemical age, excessive dispersion or too little transport of emissions
to the Pasadena site in the model, or low intrinsic SOA production
efficiency.</p>
      <p>Comparisons of modeled and measured CO normalized for background CO
(<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">△</mml:mi></mml:math></inline-formula>CO, where
<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">△</mml:mi></mml:math></inline-formula>CO <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> CO <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mtext>background</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and modeled
<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mtext>background</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 75 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppb</mml:mi></mml:math></inline-formula>; see <xref ref-type="bibr" rid="bib1.bibx31" id="text.87"/> for
CO background measurements) show 300 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppb</mml:mi></mml:math></inline-formula> measured <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">△</mml:mi></mml:math></inline-formula>CO vs.
150 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppb</mml:mi></mml:math></inline-formula> modeled <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">△</mml:mi></mml:math></inline-formula>CO. This observation suggests CMAQ
anthropogenic CO emissions, which are often used as a proxy for anthropogenic
emissions, may be a factor of 2 too low, or alternatively that excessive
dispersion and/or too low transport of emissions to Pasadena in the model
results in the lower modeled CO (see Fig. S6 of the Supplement for CMAQ-VBS
CO model performance). <xref ref-type="bibr" rid="bib1.bibx6" id="text.88"/>, who also used the 2011 NEI,
reported a similar model underprediction (approximately a factor of 2) for
total VOCs at Pasadena. However, <xref ref-type="bibr" rid="bib1.bibx6" id="text.89"/> reported the 2011 NEI-based SOA precursor concentrations were in relatively good agreement with
measured values, though xylene and toluene were generally overpredicted, which
could be attributed to underpredictions in photochemical age leading to
insufficient xylene oxidation (e.g., at 0.1 day photochemical age, <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>75</mml:mn></mml:mrow></mml:math></inline-formula> % of emitted xylene would remain, but at actual ambient photochemical
age a larger fraction would have reacted). CMAQ SOA precursor concentrations
were a factor of 1.2 too low compared to 3 h measurements and a factor of
1.1 too high compared to 1 h measurements <xref ref-type="bibr" rid="bib1.bibx6" id="paren.90"/>. The slight
overprediction of SOA precursor concentrations, along with the factor of 2
underprediction of CO, suggests the SOA precursor to CO emission ratio was
incorrect by a factor of 2. Comparisons of the ratio of xylene and toluene
emissions to CO emissions in LA and Orange counties against observed xylene
and toluene extrapolated to zero photochemical age (to account for
photochemistry) to observed CO support this, as the emissions ratio (0.030)
is approximately twice the observed ratio (0.014) and consistent with
<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">△</mml:mi></mml:math></inline-formula>CO being low by a factor of 2 in the model.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>(left) CMAQ-VBS modeled SOA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO vs. photochemical age
[<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi>log⁡</mml:mi></mml:mrow></mml:math></inline-formula>(NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>y</mml:mi></mml:msub></mml:math></inline-formula>)] at Pasadena. Colors indicate the relative
density of points determined using the Gaussian density kernel estimate (red
corresponds to high density and blue corresponds to low density). Also
indicated are the slopes of the best fit lines for the same metric for
observations <xref ref-type="bibr" rid="bib1.bibx32" id="paren.91"/>, CMAQ-VBS, traditional CMAQ (CMAQ-AE6), and
CMAQ with the SIMPLE SOA treatment (Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS3"/>). (right) CMAQ-VBS
and CMAQ-AE6 SOA vs. O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) minus O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
background at Pasadena. Also plotted are the slopes of the best fit line for
the same metric for observations made from a number of urban areas, including
Pasadena.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/4081/2016/acp-16-4081-2016-f05.pdf"/>

          </fig>

      <p>The role of photochemical age in underpredictions was explored at Pasadena by
examining SOA formed (plotted as SOA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO to approximately
correct for differences in emissions and dilution between times) in CMAQ-VBS
vs. photochemical age (estimated using <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi>log⁡</mml:mi></mml:mrow></mml:math></inline-formula>(NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>y</mml:mi></mml:msub></mml:math></inline-formula>);
<xref ref-type="bibr" rid="bib1.bibx45" id="altparen.92"/>) (Fig. <xref ref-type="fig" rid="Ch1.F5"/>). The slope of the best fit
line (66 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">ppm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) was low by <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>1.6</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>
compared to the measured value of
108 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">ppm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx32" id="paren.93"/>. However, when the
lower <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO in CMAQ is accounted for, the best estimate for the
underprediction is 3.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>. Compared to the measured photochemical age
(estimated by <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi>log⁡</mml:mi></mml:mrow></mml:math></inline-formula>(NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>y</mml:mi></mml:msub></mml:math></inline-formula>)), the photochemical age component
of CMAQ-VBS SOA was low by <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>1.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, which helps explain part of
the underprediction in SOA concentrations (Figs. <xref ref-type="fig" rid="Ch1.F3"/> and
<xref ref-type="fig" rid="Ch1.F4"/>) but not underpredictions of SOA production efficiency
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>) (i.e., the efficiency per unit precursor at a given
age). For reference, Fig. <xref ref-type="fig" rid="Ch1.F5"/> also includes the slope for
CMAQ-AE6 predictions (8 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">ppm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), which was much
lower than the slope for CMAQ-VBS and also much lower than observations for
multiple urban areas <xref ref-type="bibr" rid="bib1.bibx18" id="paren.94"/>.</p>
      <p>Examining modeled SOA vs. odd oxygen
(<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>≡</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>) <xref ref-type="bibr" rid="bib1.bibx34 bib1.bibx67" id="paren.95"/>, which leverages high measured correlations of SOA and <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
with generally good model performance of <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> (true for Pasadena
during CalNex; <xref ref-type="bibr" rid="bib1.bibx43" id="altparen.96"/>), the slope for CMAQ-VBS was
72 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">ppb</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">V</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F5"/>). This
is approximately a factor of 2 lower than observations at Pasadena
(146 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">ppb</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">V</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) <xref ref-type="bibr" rid="bib1.bibx31" id="paren.97"/>, where
measurements were comparable to other urban areas <xref ref-type="bibr" rid="bib1.bibx67 bib1.bibx53 bib1.bibx70" id="paren.98"/>. In comparison, CMAQ-AE6 (which has identical
<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> concentrations to CMAQ-VBS) underpredicted the metric by
a factor of 16, again suggesting that while CMAQ-VBS underpredicts SOA, it
does considerably better than the traditional CMAQ-AE6 SOA treatment. Note,
in CMAQ-VBS sensitivity simulations without aging reactions
(Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS2"/>) the slope of SOA vs. <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
(11 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">ppb</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">V</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) was nearly equivalent to the
slope of CMAQ-AE6 (9 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">ppb</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">V</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). This
indicates most of the CMAQ-VBS SOA mass was produced as a result of aging of
SVOCs and is further discussed in Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS2"/>.</p>
      <p>Thus our analysis suggests that the SOA production efficiency in CMAQ-VBS is
too low by 1.6 to 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, photochemical age is too low by a factor of
1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, and the remaining underprediction (1.6 to 2.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>)
is attributed to other factors (emissions, transport, etc.). Combining both
underestimates of the SOA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO (1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> and 3.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>)
implies that SOA concentrations should be too low by 4.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, which
agrees with the 5.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> underprediction of SOA compared to AMS OOA.</p>
      <p>One possible reason for the underestimation of SOA production efficiency in
CMAQ-VBS (and CMAQ-AE6) is that CMAQ SOA yields do not account for SVOC wall
loss, which <xref ref-type="bibr" rid="bib1.bibx71" id="text.99"/> indicated can reduce SOA production by 2 to
4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> in chambers. However, the factor of 4 is for alkane systems
(speciated long alkanes are not considered SOA precursors in CB05) and
toluene and is specific to the smog chamber used in <xref ref-type="bibr" rid="bib1.bibx71" id="text.100"/>. Other
studies have generally reported lower values, ranging from 1.2 to 4.1 for
low-<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> conditions and 1.1 to 2.2 for high-<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> conditions
<xref ref-type="bibr" rid="bib1.bibx55 bib1.bibx14 bib1.bibx15 bib1.bibx48 bib1.bibx11" id="paren.101"/>. Therefore, the
2–4 factor likely represents an upper bound and SVOC wall loss does not
likely account for the entire underestimate of SOA production efficiency.</p>
      <p>Another possibility for the underprediction of SOA in CMAQ-VBS is SOA formed
from missing or mischaracterized (as unspeciated VOCs) IVOC emissions. There
is significant uncertainty currently associated with IVOC emissions and their
SOA yields. Current CMAQ-VBS IVOC emissions are scaled to primary SVOC
emissions (1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>) based on the results of a diesel generator
<xref ref-type="bibr" rid="bib1.bibx57" id="paren.102"/> and could potentially be updated to utilize more recent
results, such as those reported by <xref ref-type="bibr" rid="bib1.bibx42" id="text.103"/>, who indicated
unspeciated organics (S/IVOCs) dominated SOA mass formed from combustion
emissions. Future work is needed to explore whether better constraining IVOC
emissions and yields in CMAQ would help improve model performance, but it
would likely not account for the entire missing SOA mass based on sensitivity
simulations using upper-bound S/IVOC emissions. In these simulations, S/IVOC
emissions were increased by 3.75 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> (SVOC <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> POA to
match HOA; IVOC <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> SVOC), 5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>
(SVOC <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> POA to match CIOA; IVOC <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> SVOC),
and 7.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> (SVOC <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> POA;
IVOC <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> SVOC) but CMAQ continued to underpredict both
average (by factors of 4.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, 3.7 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, and 2.9 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>) and
daily peak (by factors of 4.6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, 3.9 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>, and 2.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>)
measured OOA. When the factor of 7.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> is used, the model is in
approximate agreement with the observations once the lower model
photochemical age and low emissions/excessive dispersion are taken into
account, which is consistent with previous modeling efforts for CalNex and
elsewhere <xref ref-type="bibr" rid="bib1.bibx24 bib1.bibx37 bib1.bibx32" id="paren.104"/>. However, the
approximate agreement may be for the wrong reasons as increased S/IVOC
emissions may account for SOA from other missing (or underrepresented)
formation pathways and should not be over-interpreted as direct evidence of
the presence of SOA formation efficiency of S/IVOCs.</p>
      <p>Note that CMAQ-VBS does not include an oligomerization formation pathway in
which heterogeneous/multiphase reactions form SOA <xref ref-type="bibr" rid="bib1.bibx74" id="paren.105"/>. The
lack of this pathway could account for underpredictions in production
efficiency though it is plausible the SVOC aging parameterization already
accounts for some of the mass formed through oligomerization. CMAQ-AE6, which
does include an oligomerization formation pathway <xref ref-type="bibr" rid="bib1.bibx13" id="paren.106"/>,
estimates that approximately 20–25 % of SOA at Pasadena is comprised of
oligomers (Fig. S5); however, because CMAQ-AE6 significantly underpredictions
SOA, this equates to only a small amount of total SOA mass
(0.06 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> on average).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>Daily average CMAQ-VBS <bold>(a)</bold> non-fossil and
<bold>(b)</bold> fossil carbon at Pasadena. Non-fossil carbon model species
include primary organic carbon from meat cooking (POC_MC), biomass burning
OC (BBOC), and biogenic secondary OC (BSOC), while fossil carbon model species
include elemental carbon (EC), anthropogenic secondary OC (ASOC), and primary
organic carbon from gasoline vehicles (POC_GV), diesel vehicles
(POC_DV), and other sources (POC_OP).</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/4081/2016/acp-16-4081-2016-f06.pdf"/>

          </fig>

</sec>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Non-fossil vs. fossil carbon</title>
      <p>In addition to tracking POA from meat cooking activities separately in
CMAQ-VBS, we also added the ability to track POA from gasoline vehicles,
diesel vehicles, and “other” sources separately. Tracking POA from various
sources provided the opportunity to compare CMAQ-VBS non-fossil vs. fossil
carbon contributions against filter-based measurements collected at Pasadena
(Fig. <xref ref-type="fig" rid="Ch1.F6"/>) <xref ref-type="bibr" rid="bib1.bibx6" id="paren.107"/>. Those measurements indicated,
on average, a near even split of non-fossil (48 %) and fossil (52 %)
carbonaceous mass <xref ref-type="bibr" rid="bib1.bibx6" id="paren.108"/>. The <xref ref-type="bibr" rid="bib1.bibx6" id="text.109"/> non-fossil
measurements were also consistent with other collocated <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>
measurements collected during the same time period (51 % non-fossil)
<xref ref-type="bibr" rid="bib1.bibx75" id="paren.110"/>.</p>
      <p>During 6 days the measured non-fossil fraction was <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> (values <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> ranged from
1.1 to 3.3) and therefore measurements on these days were excluded from our
analysis as outliers. We believe these outliers were due to a plume from
a nearby medical waste incinerator passing directly by the measurement site.
The non-fossil fraction estimates assume a non-fossil <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>
concentration of 1.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup></mml:math></inline-formula>C <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C and emissions
from medical incinerators, which contain <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>, can bias the
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup></mml:math></inline-formula>C <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> C ratio <xref ref-type="bibr" rid="bib1.bibx9" id="paren.111"/>. Other results were likely also
influenced by the incinerator, though to a lesser extent, biasing the
non-fossil carbon fraction high.</p>
      <p>For the purposes of the comparison, we assumed non-fossil carbon was
comprised of biogenic SOC, biomass burning POC, and all meat cooking POC
(measurements suggest <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>75</mml:mn></mml:mrow></mml:math></inline-formula> % of meat cooking carbon is non-fossil
but are likely biased due to imperfections of the PMF analysis;
<xref ref-type="bibr" rid="bib1.bibx31 bib1.bibx75" id="altparen.112"/>). We assumed fossil carbon was comprised of
EC, anthropogenic SOC, POC from gasoline and diesel vehicles, and all POC
from “other” emission sources. Non-fossil carbon was always underpredicted
in CMAQ-VBS (average predictions of 0.61 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> vs.
average observation of 1.86 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
(Table <xref ref-type="table" rid="Ch1.T5"/>) and the model predicted it to be dominated by meat
cooking emissions. This suggests missing SOA formation pathways, low model
SOA yields, or missing emission sources of non-fossil carbon at or upwind of
Pasadena, including the substantial likely underestimate of cooking POA
discussed above. Higher SOA formation from cooking emissions than
parameterized here <xref ref-type="bibr" rid="bib1.bibx32" id="paren.113"/> could account for some of the
discrepancy, although this source is poorly characterized. In-basin biogenic
SOA (e.g., formed from VOCs emitted within the LA basin) and advection of
marine OA are estimated to be very small <xref ref-type="bibr" rid="bib1.bibx32" id="paren.114"/>, and they are unlikely
to account for the noted discrepancy. Not enough formation and/or advection
of biogenic SOA from the north may account for some of the missing non-fossil
SOA as well <xref ref-type="bibr" rid="bib1.bibx32" id="paren.115"/>.</p>
      <p>Contrastingly, CMAQ-VBS did a reasonably good job of predicting fossil carbon
at Pasadena (average predictions of 1.81 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> vs.
average observation of 1.97 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
(Table <xref ref-type="table" rid="Ch1.T5"/>), though the model tended to underpredict fossil
carbon during days with higher measured OOA (e.g., 4 to 10 June;
Fig. <xref ref-type="fig" rid="Ch1.F3"/>). Fossil carbon was generally dominated by EC and
anthropogenic secondary organic carbon (ASOC). Comparisons of CMAQ-VBS EC
(which has an identical treatment in CMAQ-AE6) concentrations (average of
1.01 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) against CalNex filter-based measurements at
Pasadena (0.51 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) suggest that CMAQ-VBS (and
CMAQ-AE6) overpredicted EC and therefore overemphasizes its contribution to
total carbon. Excluding EC, CMAQ-VBS predicted considerably less non-EC
fossil carbon (average of 0.80 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) compared to
observed (1.46 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) (Table <xref ref-type="table" rid="Ch1.T5"/> and
Fig. S7). Additional details regarding the filter-based measurements and the
EC <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> OC split in the NEI are reported in <xref ref-type="bibr" rid="bib1.bibx6" id="text.116"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p>CMAQ-VBS modeled primary OA concentrations from gasoline
vehicles <bold>(a)</bold>, diesel vehicles <bold>(b)</bold>, meat
cooking <bold>(c)</bold>, biomass burning <bold>(d)</bold>, and “other”
sources <bold>(e)</bold>. Note the scale for diesel vehicles is an order of
magnitude lower than for other sources.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/4081/2016/acp-16-4081-2016-f07.png"/>

        </fig>

      <p>Comparisons of the CMAQ-VBS diurnal profiles for non-fossil and fossil
carbon at Pasadena against measurements made by <xref ref-type="bibr" rid="bib1.bibx75" id="text.117"/>
indicated the model  captured the overall pattern of the
measurements well (higher non-fossil carbon in the morning and evening with
the minimum occurring in the afternoon) but was biased towards fossil
carbon (see Fig. S8 of the Supplement). The fact that the model
represented the measured diurnal pattern well but was biased suggests
that it was missing both non-fossil (in the morning and evening) and
fossil sources (in the afternoon). This is consistent with model
underpredictions of meat cooking POA (non-fossil) in the
morning/evening, minimal contributions from model SOA (non-fossil)
throughout the day, and underpredictions of the afternoon peak in
anthropogenic SOA (fossil).</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>CMAQ-VBS sensitivity analysis</title>
<sec id="Ch1.S3.SS4.SSS1">
  <title>POA source apportionment</title>
      <p>Higher CMAQ-VBS predictions of POA from gasoline vehicles compared to diesel
vehicles was true throughout southern California (Fig. <xref ref-type="fig" rid="Ch1.F7"/>).
Most POA was comprised of meat cooking POA, followed by POA from gasoline
vehicles, “other” sources, and finally diesel vehicles. Note that the
diesel vehicle panel in Fig. <xref ref-type="fig" rid="Ch1.F7"/> required a scale an order of
magnitude lower than the other sources. At Pasadena, POA was comprised of
48 % meat cooking, 18 % gasoline vehicles, 13 % biomass burning
(in the form of residential wood combustion), 13 % “other”, and 8 %
diesel vehicles. This further emphasizes the relative importance of meat
cooking activities relative to mobile sources as well as gasoline vehicle
emissions compared to diesel vehicle emissions. We note that the predicted
urban POA has larger non-fossil than fossil fraction.</p>
      <p>Of note was the limited contributions of gasoline and diesel vehicle POC
emissions to total carbon at Pasadena, where fossil OC was dominated by ASOC
(Fig. <xref ref-type="fig" rid="Ch1.F6"/>). This result, coupled with the fact that the
majority of ASOC precursor emissions originated from gasoline vehicles and
point sources, suggests that gasoline vehicles dominated mobile source OC
contributions <xref ref-type="bibr" rid="bib1.bibx4 bib1.bibx29 bib1.bibx25 bib1.bibx32" id="paren.118"/>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4" specific-use="star"><caption><p>As in Table <xref ref-type="table" rid="Ch1.T3"/> but for CMAQ-VBS organic carbon
(OC) model predictions in sensitivity simulations with aging of biogenic
SOA.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Species</oasis:entry>  
         <oasis:entry colname="col2">Network</oasis:entry>  
         <oasis:entry colname="col3">Mean obs.</oasis:entry>  
         <oasis:entry colname="col4">Mean model</oasis:entry>  
         <oasis:entry colname="col5">MdnB</oasis:entry>  
         <oasis:entry colname="col6">MdnE</oasis:entry>  
         <oasis:entry colname="col7">NMdnB</oasis:entry>  
         <oasis:entry colname="col8">NMdnE</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col5">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col6">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col7">(%)</oasis:entry>  
         <oasis:entry colname="col8">(%)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">OC</oasis:entry>  
         <oasis:entry colname="col2">IMPROVE (247)</oasis:entry>  
         <oasis:entry colname="col3">0.71</oasis:entry>  
         <oasis:entry colname="col4">0.42</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.25</oasis:entry>  
         <oasis:entry colname="col6">0.27</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>41.8</oasis:entry>  
         <oasis:entry colname="col8">45.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">CSN (159)</oasis:entry>  
         <oasis:entry colname="col3">1.26</oasis:entry>  
         <oasis:entry colname="col4">1.00</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.16</oasis:entry>  
         <oasis:entry colname="col6">0.37</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>13.4</oasis:entry>  
         <oasis:entry colname="col8">30.6</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T5"><caption><p>Comparisons of CMAQ-VBS non-fossil and fossil C against filter-based
measurements (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn>25</mml:mn></mml:mrow></mml:math></inline-formula>).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">CMAQ-VBS</oasis:entry>  
         <oasis:entry colname="col3">Obs.</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col3">(<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">C</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Non-fossil C</oasis:entry>  
         <oasis:entry colname="col2">0.61</oasis:entry>  
         <oasis:entry colname="col3">1.86</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Fossil C (with EC)</oasis:entry>  
         <oasis:entry colname="col2">1.81</oasis:entry>  
         <oasis:entry colname="col3">1.97</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Fossil C (without EC)</oasis:entry>  
         <oasis:entry colname="col2">0.8</oasis:entry>  
         <oasis:entry colname="col3">1.46</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p>Model contributions to SOA at Pasadena from first-product
anthropogenic and biogenic VOCs (A_VOC, B_VOC), first-product
anthropogenic IVOCs (A_IVOC, B_IVOC), and aging reactions of secondary
SVOCs originating from anthropogenic IVOCs (A_IAGE), anthropogenic VOCs
(A_VAGE), and biogenic VOCs (B_AGE). Note, the aging of biogenic SVOCs
was turned on only during sensitivity simulations.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/4081/2016/acp-16-4081-2016-f08.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS4.SSS2">
  <title>Contributions from CMAQ-VBS SOA formation pathways</title>
      <p>As a sensitivity study, the aging of secondary biogenic SVOCs was turned on
using the same oxidation pathways used for the aging of secondary
anthropogenic SVOCs in CMAQ-VBS. That is, secondary biogenic SVOCs were aged
by reactions with OH in the gas phase using a rate constant of <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">molec</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and each aging step reduced the
volatility by an order of magnitude. In the simulation with aging of
secondary biogenic SVOCs, SOA concentrations were <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn>0.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> higher throughout the day at Pasadena compared to
simulations that did not age secondary biogenic SVOCs
(Fig. <xref ref-type="fig" rid="Ch1.F8"/>). The diurnal profile indicates aged biogenic SOA
concentrations were essentially constant throughout the day, which is the
same pattern as AMS LV-OOA. A scenario where LA basin biogenic SOA precursor
emissions were zeroed out indicated almost all (95 %) of the predicted
biogenic SOA originated from outside the basin, which is consistent with
<xref ref-type="bibr" rid="bib1.bibx32" id="text.119"/>.</p>
      <p>The additional non-fossil carbon mass from biogenic SOA would help to close
the gap in the modeled vs. measured non-fossil carbon at Pasadena.
Furthermore, the additional SOA mass improved overall OC model performance at
routine monitoring network sites (Table <xref ref-type="table" rid="Ch1.T4"/>)
comparable to, if not better, than CMAQ-AE6 model performance. Monoterpene
concentrations were underestimated at Pasadena <xref ref-type="bibr" rid="bib1.bibx6" id="paren.120"/>, although
biogenic VOCs emitted in the LA basin make a very small contribution to SOA
in Pasadena. Rather, biogenic VOCs emitted in the Central Valley and
surrounding mountains are thought to be the major source of biogenic SOA
observed in the basin <xref ref-type="bibr" rid="bib1.bibx32" id="paren.121"/>. CMAQ-VBS could potentially
overestimate biogenic SOA if the underprediction of monoterpene emissions
applies to other areas of California. Further evaluation of the impacts of
biogenic SOA aging are needed, particularly in areas dominated by biogenic
SOA, such as in the southeastern USA.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F8"/> also provides the contribution of the three
standard SOA formation pathways in CMAQ-VBS (VOCs, IVOCs, and aging) to
predicted SOA concentrations at Pasadena. These were estimated using
sensitivity simulations without IVOCs, aging, or both and then taking the
difference between results from the various scenarios. The results indicate
the majority of SOA was formed from aging, representing a technique to
increase model SOA yields. Although via a different process, the resulting
outcome is similar to that obtained whether SOA yields are increased to account
for SVOC losses to chamber walls, as proposed by <xref ref-type="bibr" rid="bib1.bibx71" id="text.122"/> and used
with CMAQ-AE6 in <xref ref-type="bibr" rid="bib1.bibx6" id="text.123"/>. Also, although the inclusion of aging
reactions leads to an increase in SOA concentrations, the model
parameterization may overemphasize the contribution from aging as recent
model-to-measurement comparisons with chamber experiments suggested the
addition of aging reactions on top of existing parameterizations can lead to
overpredictions of SOA concentrations <xref ref-type="bibr" rid="bib1.bibx72" id="paren.124"/>. CMAQ-VBS predicted
comparable SOA (considering first generation only) from VOCs to CMAQ-AE6,
which one would expect given that they produce comparable SOA yields (see
Figs. S9–S15 of the Supplement for SOA yield curves). However, the inclusion
of higher-volatility semivolatile products (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> of 100 and 1000)
provides high yielding points along the yield curve missing in Odum two-product
framework of CMAQ-AE6. Thus, CMAQ-VBS transfers more mass from VOC precursor
to semivolatile oxidation product but requires the aging process to lower the
volatility of the semivolatile product to the point of condensing to form
SOA.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p>Comparison of the SIMPLE SOA parameterization in CMAQ to CMAQ-VBS
SOA and AMS OOA <bold>(a)</bold> diurnal cycle and <bold>(b)</bold> all hours at the
Pasadena CalNex site.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/4081/2016/acp-16-4081-2016-f09.png"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS4.SSS3">
  <title>Simplified SOA parameterization</title>
      <p>Given the limitations in CMAQ-AE6 and CMAQ-VBS to accurately predict SOA at
Pasadena and uncertainty about how best to improve predictions,  the
question is
raised as to whether other parameterizations can improve CMAQ performance in the
near term. To this end, we have applied a simplified SOA parameterization
(SIMPLE) in CMAQ to provide an alternative SOA modeling budget for comparison
with AE6 and VBS. SIMPLE was originally developed by <xref ref-type="bibr" rid="bib1.bibx37" id="text.125"/> and
recently shown to perform well in predicting anthropogenic SOA at Pasadena
<xref ref-type="bibr" rid="bib1.bibx32" id="paren.126"/>. A key goal of the parameterization is to provide a quick
way to estimate the amount of anthropogenic SOA formed from pollution
sources, especially for studies in which mechanistic SOA formation
description is not the goal, but having the correct amount of aerosol present
is important for the results of the simulation. It can also serve as
a simple-to-implement benchmark to compare more complex parameterizations
across different models. The parameterization uses a single SOA precursor
(VOC<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∗</mml:mo></mml:msup></mml:math></inline-formula>) scaled to CO emissions which reacts with OH. The oxidation
product is treated as nonvolatile. In our implementation in CMAQ-VBS, we use
an emission rate of 0.069 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">VOC</mml:mi><mml:mo>∗</mml:mo></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">CO</mml:mi></mml:mrow></mml:math></inline-formula> and
a <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.25 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">molec</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>,
based on the optimum values for Pasadena reported in <xref ref-type="bibr" rid="bib1.bibx32" id="text.127"/>.
<xref ref-type="bibr" rid="bib1.bibx32" id="text.128"/> found that the SIMPLE parameterization compared favorably
to measurements and VBS box model results at Pasadena.</p>
      <p>SIMPLE predicted more anthropogenic SOA mass than CMAQ-VBS (2.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>
more at the afternoon peak) following a similar diurnal cycle
(Fig. <xref ref-type="fig" rid="Ch1.F9"/>). However, it still underpredicted the AMS-measured
SV-OOA by a factor of 2.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> at the afternoon peak. The slope of
SOA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO vs. <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mi>log⁡</mml:mi></mml:mrow></mml:math></inline-formula>(NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>y</mml:mi></mml:msub></mml:math></inline-formula>) for SIMPLE was
113 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">ppm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, which was slightly more than the
measured 108 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">ppm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and suggests that the SIMPLE
parameterization is performing as expected and has an intrinsic SOA formation
efficiency consistent with the observations. Underpredictions of
photochemical age and low emissions/excessive dispersion most likely explain
the observed difference, as CO was underpredicted both in this study (see the
Supplement) and in <xref ref-type="bibr" rid="bib1.bibx6" id="text.129"/>. The factor of 2 difference in modeled
vs. measured CO indicated in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2.SSS3"/> are similar to the
2.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> underprediction in SIMPLE. This shows that the use of SIMPLE in
a model can help diagnose model problems that are unrelated to the model
intrinsic SOA formation efficiency. CO inventories can also be estimated from
ambient data (e.g., <xref ref-type="bibr" rid="bib1.bibx8" id="altparen.130"/>), providing an alternative to
bottom-up inventories.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusions</title>
      <p>The application of the CMAQ-VBS over California and Nevada in May
and June 2010 was found to underpredict OC at routine monitoring networks,
likely due to underpredictions of SOA (missing formation pathways, emissions,
formation efficiency, etc.). The underprediction of CMAQ-VBS was more
pronounced than CMAQ-AE6, particularly at CSN monitors
(Table <xref ref-type="table" rid="Ch1.T3"/>) which are primarily located in urban areas
and where modeled POA comprised a higher percentage of OC, and therefore
likely attributed to the semivolatile treatment of POA in CMAQ-VBS. However,
CMAQ-VBS was able to better capture the POA/SOA split, total POA mass, and
total SOA mass compared to AMS measurements at Pasadena. CMAQ-VBS predicted
less POA (as a result of evaporation) and more SOA (90 % attributed to
aging of anthropogenic SOA) compared to CMAQ-AE6.</p>
      <p>CMAQ-VBS underpredicted the measured AMS OOA midday peak by 5.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>,
albeit to a lesser extent than CMAQ-AE6 predictions (38 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> ). Using
two new methods, one based on species ratios and the other based on
a simplified SOA parameterization from the observations, we apportioned the
SOA underprediction from CMAQ-VBS to too-slow photochemical oxidation based
on <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> : <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>y</mml:mi></mml:msub></mml:math></inline-formula> (1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> lower than observed at
Pasadena), too-low intrinsic SOA efficiency (1.6 to 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> too low for
Pasadena), and too-low emissions/excessive dispersion for the Pasadena site
(1.6 to 2.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> too low/high). Individually, none of the recently
proposed updates for SOA predictions (SVOC wall loss <xref ref-type="bibr" rid="bib1.bibx71" id="paren.131"/>,
unspeciated IVOCs <xref ref-type="bibr" rid="bib1.bibx42" id="paren.132"/>, aging of biogenic SOA
<xref ref-type="bibr" rid="bib1.bibx23" id="paren.133"/>, and aging of S/IVOCs) can resolve the model/measurement
discrepancy, but a combination of the factors may.</p>
      <p>POA at the Pasadena CalNex site was found to be mostly from meat cooking
emissions (48 %) and to lesser extents from gasoline vehicle emissions
(18 %), diesel vehicle emissions (8 %), biomass burning (13 %),
and “other” emissions (13 %) – interestingly more than 50 % from
non-fossil (cooking and biomass burning) emissions. Furthermore, the
semivolatile treatment of POA better represented the measured AMS diurnal
profile of HOA than nonvolatile POA, particularly during morning and evening
hours. Using sensitivity simulations, we estimated that the NEI POA captures
approximately 50 % of the observed meat cooking SVOCs and approximately
66 % of SVOCs from all other sources. However, CMAQ-VBS underpredictions
of POA may also be attributed to the volatility distribution applied to
emissions or missing/mischaracterized POA oxidation. A sensitivity simulation
suggested increasing CMAQ-VBS SVOC emissions by 1.5 to 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>  would
degrade POA model performance in the morning and evening.</p>
      <p>Which OA treatment is more appropriate, CMAQ-VBS or CMAQ-AE6,
depends on the user's modeling needs and goals. The traditional CMAQ-AE6
treatment, although it has known limitations (generally overpredicting POA and
underpredicting SOA), more accurately predicts total OA measured at routine
monitoring networks. Conversely, CMAQ-VBS treats primarily emitted OA as
semivolatile and easily incorporates an estimate of IVOC emissions missing
from the inventory to provide improved predictions on the total SOA mass and
the POA/SOA split at Pasadena. The AE6 approach provides some utility in that
parent VOCs and reaction processes are more clearly linked to SOA, which is
sometimes useful for scientific and regulatory model applications. Due to the
difference in SOA/POA splits, the two CMAQ configurations may respond
differently to VOC and/or <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">NO</mml:mi></mml:mrow></mml:math></inline-formula><inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> emission reductions, which should be
examined in future work. Another area for future work is updating the POA
emission inventory, originally developed for a nonvolatile POA treatment, to
account for semivolatile POA and likely improving CMAQ-VBS total OA
predictions.</p>
      <p>A future extension of this work includes enhancements to SOA from
IVOCs in CMAQ. IVOC emissions are currently scaled to POA. Recent
results published by <xref ref-type="bibr" rid="bib1.bibx42" id="text.134"/> provide new insights into how to
better estimate IVOC emissions from gasoline and diesel vehicles and
biomass burning. With updated IVOC emissions and parameterizations,
coupled with comparisons of IVOC measurements made during CalNex
<xref ref-type="bibr" rid="bib1.bibx73" id="paren.135"/>, CMAQ predictions may be able to close the gap
between measured and modeled SOA and provide additional certainty in
both IVOCs and the SOA formed from IVOCs.</p>
<sec id="Ch1.S4.SSx1" specific-use="unnumbered">
  <title>Information about the Supplement</title>
      <p>In addition to figures and tables already referenced in the text, the
Supplement includes additional comparisons of CMAQ-AE6 and VBS (Fig. S16);
comparisons of CMAQ-VBS inorganic aerosols against AMS measurements
(Fig. S17); CMAQ-VBS non-fossil and fossil C at Bakersfield, CA (Fig. S18);
CMAQ-VBS SOA contributions at Bakersfield, CA (Fig. S19); volatility
distribution of CMAQ-VBS organic aerosols and vapors at Pasadena and
Bakersfield (Fig. S20); and CMAQ-VBS modeled OH diurnal profile at Pasadena
(Fig. S21).</p>
</sec>
</sec>

      
      </body>
    <back><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/acp-16-4081-2016-supplement" xlink:title="pdf">doi:10.5194/acp-16-4081-2016-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><ack><title>Acknowledgements</title><p>The authors would like to acknowledge John Offenberg of the US EPA and
Allan Biedler, Chris Allen, and James Beilder of CSC for their contributions
to this work. This project was supported in part by an appointment to the
Internship/Research Participation Program at the Office of Research and
Development, US Environmental Protection Agency, administered by the Oak
Ridge Institute for Science and Education through an interagency agreement
between the US Department of Energy and EPA. Patrick L. Hayes and
Jose L. Jimenez were partially supported by CARB 11-305 and DOE (BER/ASR)
DE-SC0011105.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?><?xmltex \hack{\noindent}?><italic>Disclaimer.</italic> Although this work was reviewed by EPA
and approved for publication, it may not necessarily reflect official agency
policy.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: K. Tsigaridis</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Ahmadov et al.(2012)Ahmadov, McKeen, Robinson, Bahreini, Middlebrook,
Gouw, Meagher, Hsie, Edgerton, Shaw et al.</label><mixed-citation>Ahmadov, R., McKeen, S., Robinson, A., Bahreini, R., Middlebrook, A.,
Gouw, J. D., Meagher, J., Hsie, E.-Y., Edgerton, E., Shaw, S., and Trainer,
M.: A volatility basis set model for summertime secondary organic aerosols
over the eastern United States in 2006, J. Geophys. Res.-Atmos., 117, D06301, <ext-link xlink:href="http://dx.doi.org/10.1029/2011JD016831" ext-link-type="DOI">10.1029/2011JD016831</ext-link>,
2012.</mixed-citation></ref>
      <ref id="bib1.bibx2"><label>Aiken et al.(2009)Aiken, Salcedo, Cubison, Huffman, DeCarlo, Ulbrich,
Docherty, Sueper, Kimmel, Worsnop, Trimborn, Northway, Stone, Schauer,
Volkamer, Fortner, de Foy, Wang, Laskin, Shutthanandan, Zheng, Zhang,
Gaffney, Marley, Paredes-Miranda, Arnott, Molina, Sosa, and
Jimenez</label><mixed-citation>Aiken, A. C., Salcedo, D., Cubison, M. J.,
Huffman, J. A., DeCarlo, P. F., Ulbrich, I. M., Docherty, K. S., Sueper, D.,
Kimmel, J. R., Worsnop, D. R., Trimborn, A., Northway, M., Stone, E. A.,
Schauer, J. J., Volkamer, R. M., Fortner, E., de Foy, B., Wang, J.,
Laskin, A., Shutthanandan, V., Zheng, J., Zhang, R., Gaffney, J.,
Marley, N. A., Paredes-Miranda, G., Arnott, W. P., Molina, L. T., Sosa, G.,
and Jimenez, J. L.: Mexico City aerosol analysis during MILAGRO using high
resolution aerosol mass spectrometry at the urban supersite (T0) – Part 1:
Fine particle composition and organic source apportionment, Atmos. Chem.
Phys., 9, 6633–6653,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-9-6633-2009">10.5194/acp-9-6633-2009</ext-link>,
2009.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Allan et al.(2010)Allan, Williams, Morgan, Martin, Flynn, Lee, Nemitz,
Phillips, Gallagher, and Coe</label><mixed-citation>Allan, J. D., Williams, P. I., Morgan, W. T., Martin, C. L., Flynn, M. J.,
Lee, J., Nemitz, E., Phillips, G. J., Gallagher, M. W., and Coe, H.:
Contributions from transport, solid fuel burning and cooking to primary
organic aerosols in two UK cities, Atmos. Chem. Phys., 10, 647–668,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-10-647-2010">10.5194/acp-10-647-2010</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Bahreini et al.(2012)Bahreini, Middlebrook, de Gouw, Warneke, Trainer,
Brock, Stark, Brown, Dube, Gilman, Hall, Holloway, Kuster, Perring, Prevot,
Schwarz, Spackman, Szidat, Wagner, Weber, Zotter, and Parrish</label><mixed-citation>Bahreini, R., Middlebrook, A. M., de Gouw, J. A., Warneke, C., Trainer, M.,
Brock, C. A., Stark, H., Brown, S. S., Dube, W. P., Gilman, J. B., Hall, K.,
Holloway, J. S., Kuster, W. C., Perring, A. E., Prevot, A. S. H.,
Schwarz, J. P., Spackman, J. R., Szidat, S., Wagner, N. L., Weber, R. J.,
Zotter, P., and Parrish, D. D.: Gasoline emissions dominate over diesel in
formation of secondary organic aerosol mass, Geophys. Res. Lett., 39, L06805,
<ext-link xlink:href="http://dx.doi.org/10.1029/2011GL050718" ext-link-type="DOI">10.1029/2011GL050718</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Baker et al.(2013)Baker, Misenis, Obland, Ferrare, Scarino, and Kelly</label><mixed-citation>
Baker, K. R., Misenis, C., Obland, M. D., Ferrare, R. A., Scarino, A. J., and Kelly, J. T.:
Evaluation of surface and upper air fine scale WRF meteorological modeling of the May and June 2010 CalNex period in California,
Atmos. Environ.,
80, 299–309, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Baker et al.(2015)Baker, Carlton, Kleindienst, Offenberg, Beaver, Gentner,
Goldstein, Hayes, Jimenez, Gilman, de Gouw, Woody, Pye, Kelly, Lewandowski, Jaoui, Stevens, Brune, Lin, Rubitschun, and Surratt</label><mixed-citation>Baker, K. R., Carlton, A. G., Kleindienst, T. E., Offenberg, J. H.,
Beaver, M. R., Gentner, D. R., Goldstein, A. H., Hayes, P. L.,
Jimenez, J. L., Gilman, J. B., de Gouw, J. A., Woody, M. C., Pye, H. O. T.,
Kelly, J. T., Lewandowski, M., Jaoui, M., Stevens, P. S., Brune, W. H.,
Lin, Y.-H., Rubitschun, C. L., and Surratt, J. D.: Gas and aerosol carbon in
California: comparison of measurements and model predictions in Pasadena and
Bakersfield, Atmos. Chem. Phys., 15, 5243–5258,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-15-5243-2015">10.5194/acp-15-5243-2015</ext-link>,
2015.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Bey et al.(2001)Bey, Jacob, Yantosca, Logan, Field, Fiore, Li, Liu, Mickley, and Schultz</label><mixed-citation>
Bey, I., Jacob, D. J., Yantosca, R. M., Logan, J. A., Field, B. D.,
Fiore, A. M., Li, Q., Liu, H. Y., Mickley, L. J., and Schultz, M. G.: Global
modeling of tropospheric chemistry with assimilated meteorology: model
description and evaluation, J. Geophys. Res.-Atmos., 106, 23073–23095, 2001.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Brioude et al.(2013)Brioude, Angevine, Ahmadov, Kim, Evan, McKeen, Hsie, Frost, Neuman, Pollack et al.</label><mixed-citation>Brioude, J., Angevine, W. M., Ahmadov, R., Kim, S.-W., Evan, S.,
McKeen, S. A., Hsie, E.-Y., Frost, G. J., Neuman, J. A., Pollack, I. B.,
Peischl, J., Ryerson, T. B., Holloway, J., Brown, S. S., Nowak, J. B.,
Roberts, J. M., Wofsy, S. C., Santoni, G. W., Oda, T., and Trainer, M.:
Top-down estimate of surface flux in the Los Angeles Basin using a mesoscale
inverse modeling technique: assessing anthropogenic emissions of CO, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
and CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and their impacts, Atmos. Chem. Phys., 13, 3661–3677,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-13-3661-2013">10.5194/acp-13-3661-2013</ext-link>,
2013.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Buchholz et al.(2013)Buchholz, Fallon, Zermeño, Bench, and
Schichtel</label><mixed-citation>Buchholz, B. A., Fallon, S. J., Zermeño, P., Bench, G., and Schichtel,
B. A.: Anomalous elevated radiocarbon measurements of PM<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn>2.5</mml:mn></mml:msub></mml:math></inline-formula>, Nuclear
Instruments and Methods in Physics Research Section B: Beam Interactions with
Materials and Atoms, 294, 631–635, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Byun and Schere(2006)</label><mixed-citation>
Byun, D. and Schere, K. L.:
Review of the governing equations, computational algorithms, and other components of the Models-3 Community Multiscale Air Quality (CMAQ) modeling system,
Appl. Mech. Rev.,
59, 51–77, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Cappa et al.(2013)Cappa, Zhang, Loza, Craven, Yee, and
Seinfeld</label><mixed-citation>Cappa, C. D., Zhang, X., Loza, C. L., Craven, J. S., Yee, L. D., and
Seinfeld, J. H.: Application of the Statistical Oxidation Model (SOM) to
Secondary Organic Aerosol formation from photooxidation of C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn>12</mml:mn></mml:msub></mml:math></inline-formula> alkanes,
Atmos. Chem. Phys., 13, 1591–1606, <ext-link xlink:href="http://dx.doi.org/10.5194/acp-13-1591-2013" ext-link-type="DOI">10.5194/acp-13-1591-2013</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Carlton and Baker(2011)</label><mixed-citation>
Carlton, A. G. and Baker, K. R.:
Photochemical modeling of the Ozark isoprene volcano: MEGAN, BEIS, and their impacts on air quality predictions,
Environ. Sci. Technol.,
45, 4438–4445, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx13"><label>Carlton et al.(2010)Carlton, Bhave, Napelenok, Edney, Sarwar, Pinder, Pouliot, and Houyoux</label><mixed-citation>
Carlton, A. G., Bhave, P. V., Napelenok, S. L., Edney, E. D., Sarwar, G., Pinder, R. W., Pouliot, G. A., and Houyoux, M.:
Model representation of secondary organic aerosol in CMAQv4.7,
Environ. Sci. Technol.,
44, 8553–8560, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Chan et al.(2009)Chan, Kautzman, Chhabra, Surratt, Chan, Crounse,
Kürten, Wennberg, Flagan, and Seinfeld</label><mixed-citation>Chan, A. W. H., Kautzman, K. E., Chhabra, P. S., Surratt, J. D., Chan, M. N.,
Crounse, J. D., Kürten, A., Wennberg, P. O., Flagan, R. C., and Seinfeld,
J. H.: Secondary organic aerosol formation from photooxidation of naphthalene
and alkylnaphthalenes: implications for oxidation of intermediate volatility
organic compounds (IVOCs), Atmos. Chem. Phys., 9, 3049–3060,
<ext-link xlink:href="http://dx.doi.org/10.5194/acp-9-3049-2009" ext-link-type="DOI">10.5194/acp-9-3049-2009</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Chhabra et al.(2011)Chhabra, Ng, Canagaratna, Corrigan, Russell,
Worsnop, Flagan, and Seinfeld</label><mixed-citation>Chhabra, P. S., Ng, N. L., Canagaratna, M. R., Corrigan, A. L., Russell, L.
M., Worsnop, D. R., Flagan, R. C., and Seinfeld, J. H.: Elemental composition
and oxidation of chamber organic aerosol, Atmos. Chem. Phys., 11, 8827–8845,
<ext-link xlink:href="http://dx.doi.org/10.5194/acp-11-8827-2011" ext-link-type="DOI">10.5194/acp-11-8827-2011</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Craven et al.(2013)Craven, Metcalf, Bahreini, Middlebrook, Hayes, Duong, Sorooshian, Jimenez, Flagan, and Seinfeld</label><mixed-citation>
Craven, J. S., Metcalf, A. R., Bahreini, R., Middlebrook, A., Hayes, P. L.,
Duong, H. T., Sorooshian, A., Jimenez, J. L., Flagan, R. C., and
Seinfeld, J. H.: Los Angeles Basin airborne organic aerosol characterization
during CalNex, J. Geophys. Res.-Atmos., 118, 11453–11467, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>DeCarlo et al.(2010)DeCarlo, Ulbrich, Crounse, de Foy, Dunlea, Aiken, Knapp, Wienhemier, Campos, Wennberg, et  al.</label><mixed-citation>DeCarlo, P. F., Ulbrich, I. M., Crounse, J., de Foy, B., Dunlea, E. J.,
Aiken, A. C., Knapp, D., Weinheimer, A. J., Campos, T., Wennberg, P. O., and
Jimenez, J. L.: Investigation of the sources and processing of organic
aerosol over the Central Mexican Plateau from aircraft measurements during
MILAGRO, Atmos. Chem. Phys., 10, 5257–5280,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-10-5257-2010">10.5194/acp-10-5257-2010</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx18"><label>De Gouw and Jimenez(2009)</label><mixed-citation>
De Gouw, J. and Jimenez, J.:
Organic aerosols in the Earth's atmosphere,
Environ. Sci. Technol.,
43, 7614–7618, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>De Gouw et al.(2008)De Gouw, Brock, Atlas, Bates, Fehsenfeld, Goldan, Holloway, Kuster, Lerner, Matthew et al.</label><mixed-citation>De Gouw, J., Brock, C., Atlas, E., Bates, T., Fehsenfeld, F., Goldan, P.,
Holloway, J., Kuster, W., Lerner, B., Matthew, B., Middlebrook, A., Onasch,
T., Peltier, R., Quinn, P., Senff, C., Stohl, A., Sullivan, A., Trainer, M.,
Warneke, C., Weber, R., and Williams, E.: Sources of particulate matter in
the northeastern United States in summer: 1. Direct emissions and secondary
formation of organic matter in urban plumes, J. Geophys. Res.-Atmos., 113,
D08301, <ext-link xlink:href="http://dx.doi.org/10.1029/2007JD009243" ext-link-type="DOI">10.1029/2007JD009243</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Docherty et al.(2008)Docherty, Stone, Ulbrich, DeCarlo, Snyder, Schauer, Peltier, Weber, Murphy, Seinfeld, Grover, Eatough, and Jimenez</label><mixed-citation>
Docherty, K. S., Stone, E. A., Ulbrich, I. M., DeCarlo, P. F., Snyder, D. C.,
Schauer, J. J., Peltier, R. E., Weber, R. J., Murphy, S. M., Seinfeld, J. H.,
Grover, B. D., Eatough, D. J., and Jimenez, J. L.: Apportionment of primary
and secondary organic aerosols in southern California during the 2005 Study
of Organic Aerosols in Riverside (SOAR-1), Environ. Sci. Technol., 42,
7655–7662, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx21"><label>Donahue et al.(2006)Donahue, Robinson, Stanier, and Pandis</label><mixed-citation>
Donahue, N., Robinson, A., Stanier, C., and Pandis, S.:
Coupled partitioning, dilution, and chemical aging of semivolatile organics,
Environ. Sci. Technol.,
40, 2635–2643, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>Donahue et al.(2013)Donahue, Chuang, Epstein, Kroll, Worsnop, Robinson, Adams, and Pandis</label><mixed-citation>
Donahue, N., Chuang, W., Epstein, S., Kroll, J., Worsnop, D., Robinson, A.,
Adams, P., and Pandis, S.: Why do organic aerosols exist? Understanding
aerosol lifetimes using the two-dimensional volatility basis set, Environ.
Chem., 10, 151–157, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx23"><label>Donahue et al.(2012)Donahue, Henry, Mentel, Kiendler-Scharr, Spindler, Bohn, Brauers, Dorn, Fuchs, Tillmann et al.</label><mixed-citation>
Donahue, N. M., Henry, K. M., Mentel, T. F., Kiendler-Scharr, A.,
Spindler, C., Bohn, B., Brauers, T., Dorn, H. P., Fuchs, H.,Tillmann, R.,
Wahner, A., Saathoff, H., Naumann, K., Möhler, O., Leisner, T., Müller,
L., Rennig, M., Hoffmann, T., Salo, K., Hallquist, M., Frosch, M., Bilde, M.,
Tritscher, T., Barmet, P., Praplan, A., DeCarlo, P., Dommen, J.,
Prérvôt, A., and Baltensperger, U.: Aging of biogenic secondary
organic aerosol via gas-phase OH radical reactions, P. Natl. Acad. Sci. USA,
109, 13503–13508, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx24"><label>Dzepina et al.(2009)Dzepina, Volkamer, Madronich, Tulet, Ulbrich, Zhang, Cappa, Ziemann, and Jimenez</label><mixed-citation>Dzepina, K., Volkamer, R. M., Madronich, S., Tulet, P., Ulbrich, I. M.,
Zhang, Q., Cappa, C. D., Ziemann, P. J., and Jimenez, J. L.: Evaluation of
recently-proposed secondary organic aerosol models for a case study in Mexico
City, Atmos. Chem. Phys., 9, 5681–5709,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-9-5681-2009">10.5194/acp-9-5681-2009</ext-link>,
2009.</mixed-citation></ref>
      <ref id="bib1.bibx25"><label>Ensberg et al.(2014)Ensberg, Hayes, Jimenez, Gilman, Kuster, de Gouw, Holloway, Gordon, Jathar, Robinson, and Seinfeld</label><mixed-citation>Ensberg, J. J., Hayes, P. L., Jimenez, J. L., Gilman, J. B., Kuster, W. C.,
de Gouw, J. A., Holloway, J. S., Gordon, T. D., Jathar, S., Robinson, A. L.,
and Seinfeld, J. H.: Emission factor ratios, SOA mass yields, and the impact
of vehicular emissions on SOA formation, Atmos. Chem. Phys., 14, 2383–2397,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-14-2383-2014">10.5194/acp-14-2383-2014</ext-link>,
2014.</mixed-citation></ref>
      <ref id="bib1.bibx26"><label>Foley et al.(2010)Foley, Roselle, Appel, Bhave, Pleim, Otte, Mathur, Sarwar, Young, Gilliam et al.</label><mixed-citation>Foley, K. M., Roselle, S. J., Appel, K. W., Bhave, P. V., Pleim, J. E.,
Otte, T. L., Mathur, R., Sarwar, G., Young, J. O., Gilliam, R. C.,
Nolte, C. G., Kelly, J. T., Gilliland, A. B., and Bash, J. O.: Incremental
testing of the Community Multiscale Air Quality (CMAQ) modeling system
version 4.7, Geosci. Model Dev., 3, 205–226,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/gmd-3-205-2010">10.5194/gmd-3-205-2010</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx27"><label>Fountoukis et al.(2011)Fountoukis, Racherla, Denier Van Der Gon, Polymeneas, Charalampidis, Pilinis, Wiedensohler, Dall'Osto, O'Dowd, and Pandis</label><mixed-citation>Fountoukis, C., Racherla, P. N., Denier van der Gon, H. A. C.,
Polymeneas, P., Charalampidis, P. E., Pilinis, C., Wiedensohler, A.,
Dall'Osto, M., O'Dowd, C., and Pandis, S. N.: Evaluation of a
three-dimensional chemical transport model (PMCAMx) in the European domain
during the EUCAARI May 2008 campaign, Atmos. Chem. Phys., 11, 10331–10347,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-11-10331-2011">10.5194/acp-11-10331-2011</ext-link>,
2011.</mixed-citation></ref>
      <ref id="bib1.bibx28"><label>Freutel et al.(2013)Freutel, Schneider, Drewnick, von der Weiden-Reinmüller, Crippa, Prévôt, Baltensperger, Poulain, Wiedensohler, Sciare et al.</label><mixed-citation>Freutel, F., Schneider, J., Drewnick, F.,
von der Weiden-Reinmüller, S.-L., Crippa, M., Prévôt, A. S. H.,
Baltensperger, U., Poulain, L., Wiedensohler, A., Sciare, J.,
Sarda-Estève, R., Burkhart, J. F., Eckhardt, S., Stohl, A., Gros, V.,
Colomb, A., Michoud, V., Doussin, J. F., Borbon, A., Haeffelin, M.,
Morille, Y., Beekmann, M., and Borrmann, S.: Aerosol particle measurements at
three stationary sites in the megacity of Paris during summer 2009:
meteorology and air mass origin dominate aerosol particle composition and
size distribution, Atmos. Chem. Phys., 13, 933–959,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-13-933-2013">10.5194/acp-13-933-2013</ext-link>,
2013.</mixed-citation></ref>
      <ref id="bib1.bibx29"><label>Gentner et al.(2012)Gentner, Isaacman, Worton, Chan, Dallmann, Davis, Liu, Day, Russell, Wilson, Weber, Guha, Harley, and Goldstein</label><mixed-citation>
Gentner, D. R., Isaacman, G., Worton, D. R., Chan, A. W. H., Dallmann, T. R.,
Davis, L., Liu, S., Day, D. A., Russell, L. M., Wilson, K. R., Weber, R.,
Guha, A., Harley, R. A., and Goldstein, A. H.: Elucidating secondary organic
aerosol from diesel and gasoline vehicles through detailed characterization
of organic carbon emissions, P. Natl. Acad. Sci. USA, 109, 18318–18323,
2012.</mixed-citation></ref>
      <ref id="bib1.bibx30"><label>Grieshop et al.(2009)Grieshop, Logue, Donahue, and Robinson</label><mixed-citation>Grieshop, A. P., Logue, J. M., Donahue, N. M., and Robinson, A. L.:
Laboratory investigation of photochemical oxidation of organic aerosol from
wood fires 1: measurement and simulation of organic aerosol evolution, Atmos.
Chem. Phys., 9, 1263–1277,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-9-1263-2009">10.5194/acp-9-1263-2009</ext-link>,
2009.
</mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bibx31"><label>Hayes et al.(2013)Hayes, Ortega, Cubison, Froyd, Zhao, Cliff, Hu, Toohey,
Flynn, Lefer, Grossberg, Alvarez, Rappenglück, Taylor, Allan, Holloway, Gilman,
Kuster, de Gouw, Massoli, Zhang, Liu, Weber, Corrigan, Russell, Isaacman, Worton,
Kreisberg, Goldstein, Thalman, Waxman, Volkamer, Lin, Surratt, Kleindienst, Offenberg, Dusanter, Griffith, Stevens, Brioude, Angevine, and Jimenez</label><mixed-citation>
Hayes, P. L., Ortega, A. M., Cubison, M. J., Froyd, K. D., Zhao, Y.,
Cliff, S. S., Hu, W. W., Toohey, D. W., Flynn, J. H., Lefer, B. L.,
Grossberg, N., Alvarez, S., Rappenglück, B., Taylor, J. W., Allan, J. D.,
Holloway, J. S., Gilman, J. B., Kuster, W. C., de Gouw, J. A., Massoli, P.,
Zhang, X., Liu, J., Weber, R. J., Corrigan, A. L., Russell, L. M.,
Isaacman, G., Worton, D. R., Kreisberg, N. M., Goldstein, A. H., Thalman, R.,
Waxman, E. M., Volkamer, R., Lin, Y. H., Surratt, J. D., Kleindienst, T. E.,
Offenberg, J. H., Dusanter, S., Griffith, S., Stevens, P. S., Brioude, J.,
Angevine, W. M., and Jimenez, J. L.: Organic aerosol composition and sources
in Pasadena, California, during the 2010 CalNex campaign, J. Geophys.
Res.-Atmos., 118, 9233–9257, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx32"><label>Hayes et al.(2015)Hayes, Carlton, Baker, Ahmadov, Washenfelder, Alvarez, Rappenglück, Gilman, Kuster, de Gouw, Zotter, Prevot, Szidat, Kleindienst, Offenberg, Ma, and Jimenez</label><mixed-citation>Hayes, P. L., Carlton, A. G., Baker, K. R., Ahmadov, R., Washenfelder, R. A.,
Alvarez, S., Rappenglück, B., Gilman, J. B., Kuster, W. C.,
de Gouw, J. A., Zotter, P., Prévôt, A. S. H., Szidat, S.,
Kleindienst, T. E., Offenberg, J. H., Ma, P. K., and Jimenez, J. L.: Modeling
the formation and aging of secondary organic aerosols in Los Angeles during
CalNex 2010, Atmos. Chem. Phys., 15, 5773–5801,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-15-5773-2015">10.5194/acp-15-5773-2015</ext-link>,
2015.</mixed-citation></ref>
      <ref id="bib1.bibx33"><label>Henderson et al.(2014)Henderson, Akhtar, Pye, Napelenok, and Hutzell</label><mixed-citation>Henderson, B. H., Akhtar, F., Pye, H. O. T., Napelenok, S. L., and
Hutzell, W. T.: A database and tool for boundary conditions for regional air
quality modeling: description and evaluation, Geosci. Model Dev., 7,
339–360,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/gmd-7-339-2014">10.5194/gmd-7-339-2014</ext-link>,
2014.</mixed-citation></ref>
      <ref id="bib1.bibx34"><label>Herndon et al.(2008)Herndon, Onasch, Wood, Kroll, Canagaratna, Jayne, Zavala, Knighton, Mazzoleni, Dubey et al.</label><mixed-citation>Herndon, S. C., Onasch, T. B., Wood, E. C., Kroll, J. H., Canagaratna, M. R.,
Jayne, J. T., Zavala, M. A., Knighton, W. B., Mazzoleni, C., Dubey, M. K.,
Ulbrich, I., Jimenez, J., Seila, R., de Gouw, J., de Foy, B., Fast, J.,
Molina, L., Kolb, C., and Worsnop, D.: Correlation of secondary organic
aerosol with odd oxygen in Mexico City, Geophys. Res. Lett., 35, L15804,
<ext-link xlink:href="http://dx.doi.org/10.1029/2008GL034058" ext-link-type="DOI">10.1029/2008GL034058</ext-link>, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx35"><label>Hersey et al.(2011)Hersey, Craven, Schilling, Metcalf, Sorooshian, Chan, Flagan, and Seinfeld</label><mixed-citation>Hersey, S. P., Craven, J. S., Schilling, K. A., Metcalf, A. R.,
Sorooshian, A., Chan, M. N., Flagan, R. C., and Seinfeld, J. H.: The Pasadena
Aerosol Characterization Observatory (PACO): chemical and physical analysis
of the Western Los Angeles basin aerosol, Atmos. Chem. Phys., 11, 7417–7443,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-11-7417-2011">10.5194/acp-11-7417-2011</ext-link>,
2011.</mixed-citation></ref>
      <ref id="bib1.bibx36"><label>Hildebrandt et al.(2009)Hildebrandt, Donahue, and Pandis</label><mixed-citation>Hildebrandt, L., Donahue, N. M., and Pandis, S. N.: High formation of
secondary organic aerosol from the photo-oxidation of toluene, Atmos. Chem.
Phys., 9, 2973–2986,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-9-2973-2009">10.5194/acp-9-2973-2009</ext-link>,
2009.</mixed-citation></ref>
      <ref id="bib1.bibx37"><label>Hodzic and Jimenez(2011)</label><mixed-citation>Hodzic, A. and Jimenez, J. L.: Modeling anthropogenically controlled
secondary organic aerosols in a megacity: a simplified framework for global
and climate models, Geosci. Model Dev., 4, 901–917,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/gmd-4-901-2011">10.5194/gmd-4-901-2011</ext-link>,
2011.</mixed-citation></ref>
      <ref id="bib1.bibx38"><label>Hodzic et al.(2010)Hodzic, Jimenez, Madronich, Canagaratna, DeCarlo, Kleinman, and Fast</label><mixed-citation>Hodzic, A., Jimenez, J. L., Madronich, S., Canagaratna, M. R.,
DeCarlo, P. F., Kleinman, L., and Fast, J.: Modeling organic aerosols in a
megacity: potential contribution of semi-volatile and intermediate volatility
primary organic compounds to secondary organic aerosol formation, Atmos.
Chem. Phys., 10, 5491–5514,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-10-5491-2010">10.5194/acp-10-5491-2010</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx39"><label>Houyoux et al.(2000)Houyoux, Vukovich, Coats, Wheeler, and Kasibhatla</label><mixed-citation>
Houyoux, M. R., Vukovich, J. M., Coats, C. J., Wheeler, N. J., and
Kasibhatla, P. S.: Emission inventory development and processing for the
Seasonal Model for Regional Air Quality (SMRAQ) project, J. Geophys.
Res.-Atmos., 105, 9079–9090, 2000.</mixed-citation></ref>
      <ref id="bib1.bibx40"><label>Huang et al.(2010)Huang, He, Hu, Canagaratna, Sun, Zhang, Zhu, Xue, Zeng, Liu et al.</label><mixed-citation>Huang, X.-F., He, L.-Y., Hu, M., Canagaratna, M. R., Sun, Y., Zhang, Q.,
Zhu, T., Xue, L., Zeng, L.-W., Liu, X.-G., Zhang, Y.-H., Jayne, J. T.,
Ng, N. L., and Worsnop, D. R.: Highly time-resolved chemical characterization
of atmospheric submicron particles during 2008 Beijing Olympic Games using an
Aerodyne High-Resolution Aerosol Mass Spectrometer, Atmos. Chem. Phys., 10,
8933–8945,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-10-8933-2010">10.5194/acp-10-8933-2010</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx41"><label>Huffman et al.(2009)Huffman, Docherty, Mohr, Cubison, Ulbrich, Ziemann, Onasch, and Jimenez</label><mixed-citation>
Huffman, J., Docherty, K., Mohr, C., Cubison, M., Ulbrich, I., Ziemann, P., Onasch, T., and Jimenez, J.:
Chemically-resolved volatility measurements of organic aerosol from different sources,
Environ. Sci. Technol.,
43, 5351–5357, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx42"><label>Jathar et al.(2014)Jathar, Gordon, Hennigan, Pye, Pouliot, Adams, Donahue, and Robinson</label><mixed-citation>
Jathar, S. H., Gordon, T. D., Hennigan, C. J., Pye, H. O. T., Pouliot, G., Adams, P. J., Donahue, N. M., and Robinson, A. L.:
Unspeciated organic emissions from combustion sources and their influence on the secondary organic aerosol budget in the United States,
P. Natl. Acad. Sci. USA,
111, 10473–10478, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx43"><label>Kelly et al.(2014)Kelly, Baker, Nowak, Murphy, Markovic, VandenBoer, Ellis, Neuman, Weber, Roberts et al.</label><mixed-citation>
Kelly, J. T., Baker, K. R., Nowak, J. B., Murphy, J. G., Markovic, M. Z.,
VandenBoer, T. C., Ellis, R. A., Neuman, J. A., Weber, R. J., Roberts, J.
M.,, Veres, P. R., de Gouw, J. A., Beaver, M. R., Newman, S., and Misenis,
C.: Fine-scale simulation of ammonium and nitrate over the South Coast Air
Basin and San Joaquin Valley of California during CalNex-2010, J. Geophys.
Res.-Atmos., 119, 3600–3614, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx44"><label>Kim et al.(2015)Kim, Jacob, Fisher, Travis, Yu, Zhu, Yantosca, Sulprizio, Jimenez, Campuzano et al.</label><mixed-citation>Kim, P. S., Jacob, D. J., Fisher, J. A., Travis, K., Yu, K., Zhu, L.,
Yantosca, R. M., Sulprizio, M. P., Jimenez, J. L., Campuzano-Jost, P.,
Froyd, K. D., Liao, J., Hair, J. W., Fenn, M. A., Butler, C. F.,
Wagner, N. L., Gordon, T. D., Welti, A., Wennberg, P. O., Crounse, J. D., St.
Clair, J. M., Teng, A. P., Millet, D. B., Schwarz, J. P., Markovic, M. Z.,
and Perring, A. E.: Sources, seasonality, and trends of southeast US aerosol:
an integrated analysis of surface, aircraft, and satellite observations with
the GEOS-Chem chemical transport model, Atmos. Chem. Phys., 15, 10411–10433,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-15-10411-2015">10.5194/acp-15-10411-2015</ext-link>,
2015.</mixed-citation></ref>
      <ref id="bib1.bibx45"><label>Kleinman et al.(2008)Kleinman, Springston, Daum, Lee, Nunnermacker, Senum, Wang, Weinstein-Lloyd, Alexander, Hubbe et al.</label><mixed-citation>Kleinman, L. I., Springston, S. R., Daum, P. H., Lee, Y.-N.,
Nunnermacker, L. J., Senum, G. I., Wang, J., Weinstein-Lloyd, J.,
Alexander, M. L., Hubbe, J., Ortega, J., Canagaratna, M. R., and Jayne, J.:
The time evolution of aerosol composition over the Mexico City plateau,
Atmos. Chem. Phys., 8, 1559–1575,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-8-1559-2008">10.5194/acp-8-1559-2008</ext-link>,
2008.</mixed-citation></ref>
      <ref id="bib1.bibx46"><label>Koo et al.(2014)Koo, Knipping, and Yarwood</label><mixed-citation>
Koo, B., Knipping, E., and Yarwood, G.: 1.5-dimensional volatility basis set
approach for modeling organic aerosol in CAMx and CMAQ, Atmos. Environ., 95,
158–164, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx47"><label>Lane et al.(2008)Lane, Donahue, and Pandis</label><mixed-citation>
Lane, T. E., Donahue, N. M., and Pandis, S. N.: Simulating secondary organic
aerosol formation using the volatility basis-set approach in a chemical
transport model, Atmos. Environ., 42, 7439–7451, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx48"><label>Loza et al.(2012)Loza, Chhabra, Yee, Craven, Flagan, and
Seinfeld</label><mixed-citation>
Loza, C., Chhabra, P., Yee, L., Craven, J., Flagan, R., and Seinfeld, J.:
Chemical aging of m-xylene secondary organic aerosol: laboratory chamber
study, Atmos. Chem. Phys., 12, 151–167, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx49"><label>May et al.(2013a)May, Levin, Hennigan, Riipinen, Lee, Collett, Jimenez, Kreidenweis, and Robinson</label><mixed-citation>
May, A. A., Levin, E. J., Hennigan, C. J., Riipinen, I., Lee, T.,
Collett, J. L., Jimenez, J. L., Kreidenweis, S. M., and Robinson, A. L.:
Gas-particle partitioning of primary organic aerosol emissions: 3. Biomass
burning, J. Geophys. Res.-Atmos., 118, 11–327, 2013a.</mixed-citation></ref>
      <ref id="bib1.bibx50"><label>May et al.(2013b)May, Presto, Hennigan, Nguyen, Gordon, and Robinson</label><mixed-citation>
May, A. A., Presto, A. A., Hennigan, C. J., Nguyen, N. T., Gordon, T. D., and
Robinson, A. L.: Gas-particle partitioning of primary organic aerosol
emissions: 1. Gasoline vehicle exhaust, Atmos. Environ., 77, 128–139, 2013b.</mixed-citation></ref>
      <ref id="bib1.bibx51"><label>May et al.(2013c)May, Presto, Hennigan, Nguyen, Gordon, and Robinson</label><mixed-citation>
May, A. A., Presto, A. A., Hennigan, C. J., Nguyen, N. T., Gordon, T. D., and
Robinson, A. L.: Gas-particle partitioning of primary organic aerosol
emissions: 2. Diesel vehicles, Environ. Sci. Technol., 47, 8288–8296, 2013c.</mixed-citation></ref>
      <ref id="bib1.bibx52"><label>Mohr et al.(2012)Mohr, DeCarlo, Heringa, Chirico, Slowik, Richter, Reche, Alastuey, Querol, Seco, Penuelas, Jimenez, Crippa, Zimmermann, Baltensperger, and Prevot</label><mixed-citation>Mohr, C., DeCarlo, P. F., Heringa, M. F., Chirico, R., Slowik, J. G.,
Richter, R., Reche, C., Alastuey, A., Querol, X., Seco, R., Peñuelas, J.,
Jiménez, J. L., Crippa, M., Zimmermann, R., Baltensperger, U., and
Prévôt, A. S. H.: Identification and quantification of organic
aerosol from cooking and other sources in Barcelona using aerosol mass
spectrometer data, Atmos. Chem. Phys., 12, 1649–1665,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-12-1649-2012">10.5194/acp-12-1649-2012</ext-link>,
2012.</mixed-citation></ref>
      <ref id="bib1.bibx53"><label>Morino et al.(2014)Morino, Tanabe, Sato, and Ohara</label><mixed-citation>
Morino, Y., Tanabe, K., Sato, K., and Ohara, T.:
Secondary organic aerosol model intercomparison based on secondary organic aerosol to odd oxygen ratio in Tokyo,
J. Geophys. Res.-Atmos.,
119, 13489–13505, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx54"><label>Murphy and Pandis(2009)</label><mixed-citation>
Murphy, B. N. and Pandis, S. N.: Simulating the formation of semivolatile
primary and secondary organic aerosol in a regional chemical transport model,
Environ. Sci. Technol., 43, 4722–4728, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx55"><label>Ng et al.(2007)Ng, Kroll, Chan, Chhabra, Flagan, and
Seinfeld</label><mixed-citation>
Ng, N., Kroll, J., Chan, A., Chhabra, P., Flagan, R., and Seinfeld, J.:
Secondary organic aerosol formation from m-xylene, toluene, and benzene,
Atmos. Chem. Phys., 7, 3909–3922, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx56"><label>Pye and Seinfeld(2010)</label><mixed-citation>Pye, H. O. T. and Seinfeld, J. H.: A global perspective on aerosol from
low-volatility organic compounds, Atmos. Chem. Phys., 10, 4377–4401,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-10-4377-2010">10.5194/acp-10-4377-2010</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx57"><label>Robinson et al.(2007)Robinson, Donahue, Shrivastava, Weitkamp, Sage, Grieshop, Lane, Pierce, and Pandis</label><mixed-citation>
Robinson, A. L., Donahue, N. M., Shrivastava, M. K., Weitkamp, E. A.,
Sage, A. M., Grieshop, A. P., Lane, T. E., Pierce, J. R., and Pandis, S. N.:
Rethinking organic aerosols: Semivolatile emissions and photochemical aging,
Science, 315, 1259–1262, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx58"><label>Ryerson et al.(2013)Ryerson, Andrews, Angevine, Bates, Brock, Cairns,
Cohen, Cooper, de Gouw, Fehsenfeld, Ferrare, Fischer, Flagan, Goldstein, Hair,
Hardesty, Hostetler, Jimenez, Langford, McCauley, McKeen, Molina, Nenes, Oltmans,
Parrish, Pederson, Pierce, Prather, Quinn, Seinfeld, Senff, Sorooshian, Stutz, Surratt, Trainer, Volkamer, Williams, and Wofsy</label><mixed-citation>
Ryerson, T. B., Andrews, A. E., Angevine, W. M., Bates, T. S., Brock, C. A.,
Cairns, B., Cohen, R. C., Cooper, O. R., de Gouw, J. A., Fehsenfeld, F. C.,
Ferrare, R. A., Fischer, M. L., Flagan, R. C., Goldstein, A. H., Hair, J. W.,
Hardesty, R. M., Hostetler, C. A., Jimenez, J. L., Langford, A. O.,
McCauley, E., McKeen, S. A., Molina, L. T., Nenes, A., Oltmans, S. J.,
Parrish, D. D., Pederson, J. R., Pierce, R. B., Prather, K., Quinn, P. K.,
Seinfeld, J. H., Senff, C. J., Sorooshian, A., Stutz, J., Surratt, J. D.,
Trainer, M., Volkamer, R., Williams, E. J., and Wofsy, S. C.: The 2010
California Research at the Nexus of Air Quality and Climate Change (CalNex)
field study, J. Geophys. Res.-Atmos., 118, 5830–5866, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx59"><label>Shrivastava et al.(2011)Shrivastava, Fast, Easter, Gustafson Jr, Zaveri, Jimenez, Saide, and Hodzic</label><mixed-citation>Shrivastava, M., Fast, J., Easter, R., Gustafson Jr., W. I., Zaveri, R. A.,
Jimenez, J. L., Saide, P., and Hodzic, A.: Modeling organic aerosols in a
megacity: comparison of simple and complex representations of the volatility
basis set approach, Atmos. Chem. Phys., 11, 6639–6662,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-11-6639-2011">10.5194/acp-11-6639-2011</ext-link>,
2011.</mixed-citation></ref>
      <ref id="bib1.bibx60"><label>Simon and Bhave(2012)</label><mixed-citation>
Simon, H. and Bhave, P. V.: Simulating the ree of oxidation in atmospheric
organic particles, Environ. Sci. Technol., 46, 331–339, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx61"><label>Skamarock and Klemp(2008)</label><mixed-citation>
Skamarock, W. C. and Klemp, J. B.: A time-split nonhydrostatic atmospheric
model for weather research and forecasting applications, J. Comput. Phys.,
227, 3465–3485, 2008.</mixed-citation></ref>
      <ref id="bib1.bibx62"><label>Sun et al.(2011)Sun, Zhang, Schwab, Demerjian, Chen, Bae, Hung, Hogrefe, Frank, Rattigan et al.</label><mixed-citation>Sun, Y.-L., Zhang, Q., Schwab, J. J., Demerjian, K. L., Chen, W.-N.,
Bae, M.-S., Hung, H.-M., Hogrefe, O., Frank, B., Rattigan, O. V., and
Lin, Y.-C.: Characterization of the sources and processes of organic and
inorganic aerosols in New York city with a high-resolution time-of-flight
aerosol mass apectrometer, Atmos. Chem. Phys., 11, 1581–1602,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-11-1581-2011">10.5194/acp-11-1581-2011</ext-link>,
2011.</mixed-citation></ref>
      <ref id="bib1.bibx63"><label>Tsimpidi et al.(2010)Tsimpidi, Karydis, Zavala, Lei, Molina, Ulbrich, Jimenez, and Pandis</label><mixed-citation>Tsimpidi, A. P., Karydis, V. A., Zavala, M., Lei, W., Molina, L.,
Ulbrich, I. M., Jimenez, J. L., and Pandis, S. N.: Evaluation of the
volatility basis-set approach for the simulation of organic aerosol formation
in the Mexico City metropolitan area, Atmos. Chem. Phys., 10, 525–546,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-10-525-2010">10.5194/acp-10-525-2010</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx64"><label>US Environmental Protection Agency(2014a)</label><mixed-citation>US Environmental Protection Agency: 2011 National Emission Inventory,
available at: <uri>https://www3.epa.gov/ttnchie1/net/2011inventory.html</uri>
(last access: 15 June 2015),
2014a.</mixed-citation></ref>
      <ref id="bib1.bibx65"><label>US Environmental Protection Agency(2014b)</label><mixed-citation>US Environmental Protection Agency:
North American Emissions Inventories – Mexico, available at:
<uri>https://www3.epa.gov/ttnchie1/net/mexico.html</uri>
(last access: 10 June 2015),
2014b.</mixed-citation></ref>
      <ref id="bib1.bibx66"><label>Volkamer et al.(2006)Volkamer, Jimenez, San Martini, Dzepina, Zhang, Salcedo, Molina, Worsnop, and Molina</label><mixed-citation>Volkamer, R., Jimenez, J. L., San Martini, F., Dzepina, K., Zhang, Q., Salcedo, D., Molina, L. T., Worsnop, D. R., and Molina, M. J.:
Secondary organic aerosol formation from anthropogenic air pollution: rapid and higher than expected,
Geophys. Res. Lett.,
33, L17811, <ext-link xlink:href="http://dx.doi.org/10.1029/2006GL026899" ext-link-type="DOI">10.1029/2006GL026899</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx67"><label>Wood et al.(2010)Wood, Canagaratna, Herndon, Onasch, Kolb, Worsnop, Kroll, Knighton, Seila, Zavala et al.</label><mixed-citation>Wood, E. C., Canagaratna, M. R., Herndon, S. C., Onasch, T. B., Kolb, C. E.,
Worsnop, D. R., Kroll, J. H., Knighton, W. B., Seila, R., Zavala, M.,
Molina, L. T., DeCarlo, P. F., Jimenez, J. L., Weinheimer, A. J.,
Knapp, D. J., Jobson, B. T., Stutz, J., Kuster, W. C., and Williams, E. J.:
Investigation of the correlation between odd oxygen and secondary organic
aerosol in Mexico City and Houston, Atmos. Chem. Phys., 10, 8947–8968,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/acp-10-8947-2010">10.5194/acp-10-8947-2010</ext-link>,
2010.</mixed-citation></ref>
      <ref id="bib1.bibx68"><label>Yarwood et al.(2005)Yarwood, Rao, Yocke, and Whitten</label><mixed-citation>
Yarwood, G., Rao, S., Yocke, M., and Whitten, G. Z.:
Updates to the Carbon Bond chemical Mechanism: CB05,
ENVIRON International Corporation, Novato, CA, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx69"><label>Zhang et al.(2007)Zhang, Jimenez, Canagaratna, Allan, Coe, Ulbrich, Alfarra,
Takami, Middlebrook, Sun, Dzepina, Dunlea, Docherty, DeCarlo, Salcedo, Onasch, Jayne,
Miyoshi, Shimono, Hatakeyama, Takegawa, Kondo, Schneider, Drewnick, Borrmann, Weimer,
Demerjian, Williams, Bower, Bahreini, Cottrell, Griffin, Rautiainen, Sun, Zhang, and Worsnop</label><mixed-citation>Zhang, Q., Jimenez, J. L., Canagaratna, M. R., Allan, J. D., Coe, H.,
Ulbrich, I., Alfarra, M. R., Takami, A., Middlebrook, A. M., Sun, Y. L.,
Dzepina, K., Dunlea, E., Docherty, K., DeCarlo, P. F., Salcedo, D.,
Onasch, T., Jayne, J. T., Miyoshi, T., Shimono, A., Hatakeyama, S.,
Takegawa, N., Kondo, Y., Schneider, J., Drewnick, F., Borrmann, S.,
Weimer, S., Demerjian, K., Williams, P., Bower, K., Bahreini, R.,
Cottrell, L., Griffin, R. J., Rautiainen, J., Sun, J. Y., Zhang, Y. M., and
Worsnop, D. R.: Ubiquity and dominance of oxygenated species in organic
aerosols in anthropogenically-influenced Northern Hemisphere midlatitudes,
Geophys. Res. Lett., 34, L13801, <ext-link xlink:href="http://dx.doi.org/10.1029/2007GL029979" ext-link-type="DOI">10.1029/2007GL029979</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx70"><label>Zhang et al.(2015)Zhang, Beekmann, Freney, Sellegri, Pichon, Schwarzenboeck, Colomb, Bourrianne, Michoud, and Borbon</label><mixed-citation>Zhang, Q. J., Beekmann, M., Freney, E., Sellegri, K., Pichon, J. M.,
Schwarzenboeck, A., Colomb, A., Bourrianne, T., Michoud, V., and Borbon, A.:
Formation of secondary organic aerosol in the Paris pollution plume and its
impact on surrounding regions, Atmos. Chem. Phys., 15, 13973–13992,
<ext-link xlink:href="http://dx.doi.org/10.5194/acp-15-13973-2015" ext-link-type="DOI">10.5194/acp-15-13973-2015</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx71"><label>Zhang et al.(2014)Zhang, Cappa, Jathar, McVay, Ensberg, Kleeman, and Seinfeld</label><mixed-citation>
Zhang, X., Cappa, C. D., Jathar, S. H., McVay, R. C., Ensberg, J. J., Kleeman, M. J., and Seinfeld, J. H.:
Influence of vapor wall loss in laboratory chambers on yields of secondary organic aerosol,
P. Natl. Acad. Sci. USA,
111, 5802–5807, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx72"><label>Zhao et al.(2015)Zhoa, Wang, Donahue, Chuang, Hildebrandt, Ng, Wang, and Hoa</label><mixed-citation>
Zhao, B., Wang, S., Donahue, N. M., Chuang, W., Hildebrandt Ruiz, L.,
Ng, N. L., Wang, Y., and Hao, J.: Evaluation of One-Dimensional and
Two-Dimensional Volatility Basis Sets in Simulating the Aging of Secondary
Organic Aerosol with Smog-Chamber Experiments, Environ. Sci. Technol., 49,
2245–2254, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx73"><label>Zhao et al.(2014)Zhao, Hennigan, May, Tkacik, de Gouw, Gilman, Kuster, Borbon, and Robinson</label><mixed-citation>
Zhao, Y., Hennigan, C. J., May, A. A., Tkacik, D. S., de Gouw, J. A., Gilman, J. B., Kuster, W., Borbon, A., and Robinson, A. L.:
Intermediate-volatility organic compounds: a large source of secondary organic aerosol,
Environ. Sci. Technol.,
48, 13743–13750, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx74"><label>Ziemann and Atkinson(2012)Ziemann and Atkinson</label><mixed-citation>Ziemann, P. J. and Atkinson, R.: Kinetics, products, and mechanisms of
secondary organic aerosol formation, Chem. Soc. Rev., 41, 6582–6605, 2012.
 </mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bibx75"><label>Zotter et al.(2014)Zotter, El-Haddad, Zhang, Hayes, Zhang, Lin, Wacker, Schnelle-Kreis, Abbaszade, Zimmermann, Surratt, Weber, Jimenez, Szidat, Baltensperger, and Prevot</label><mixed-citation>
Zotter, P., El-Haddad, I., Zhang, Y. L., Hayes, P. L., Zhang, X. L.,
Lin, Y. H., Wacker, L., Schnelle-Kreis, J., Abbaszade, G., Zimmermann, R.,
Surratt, J. D., Weber, R., Jimenez, J. L., Szidat, S., Baltensperger, U., and
Prevot, A.: Diurnal cycle of fossil and nonfossil carbon using radiocarbon
analyses during CalNex, J. Geophys. Res.-Atmos., 119, 6818–6835, 2014.</mixed-citation></ref>

  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Understanding sources of organic aerosol during CalNex-2010 using the CMAQ-VBS</article-title-html>
<abstract-html><p class="p">Community Multiscale Air Quality (CMAQ) model simulations utilizing the
traditional organic aerosol (OA) treatment (CMAQ-AE6) and a volatility basis
set (VBS) treatment for OA (CMAQ-VBS) were evaluated against measurements
collected at routine monitoring networks (Chemical Speciation Network (CSN)
and Interagency Monitoring of Protected Visual Environments (IMPROVE)) and
those collected during the 2010 California at the Nexus of Air Quality and
Climate Change (CalNex) field campaign to examine important sources of
OA in southern California.</p><p class="p">Traditionally, CMAQ treats primary organic aerosol (POA) as nonvolatile and
uses a two-product framework to represent secondary organic aerosol (SOA)
formation. CMAQ-VBS instead treats POA as semivolatile and lumps OA using
volatility bins spaced an order of magnitude apart. The CMAQ-VBS approach
underpredicted organic carbon (OC) at IMPROVE and CSN sites to a greater
degree than CMAQ-AE6 due to the semivolatile POA treatment. However,
comparisons to aerosol mass spectrometer (AMS) measurements collected at
Pasadena, CA, indicated that CMAQ-VBS better represented the diurnal profile
and primary/secondary split of OA. CMAQ-VBS SOA underpredicted the average
measured AMS oxygenated organic aerosol (OOA, a surrogate for SOA)
concentration by a factor of 5.2, representing a considerable improvement to
CMAQ-AE6 SOA predictions (factor of 24 lower than AMS).</p><p class="p">We use two new methods, one based on species ratios (SOA ∕ ΔCO and
SOA ∕ O<sub><i>x</i></sub>) and another on a simplified SOA parameterization, to
apportion the SOA underprediction for CMAQ-VBS to slow photochemical
oxidation (estimated as 1.5  ×  lower than observed at Pasadena using
−<i>log</i>(NO<sub><i>x</i></sub> : NO<sub><i>y</i></sub>)), low intrinsic SOA formation efficiency (low by
1.6 to 2  ×  for Pasadena), and low emissions or excessive dispersion
for the Pasadena site (estimated to be 1.6 to 2.3  ×  too
low/excessive). The first and third factors are common to CMAQ-AE6, while the
intrinsic SOA formation efficiency for that model is estimated to be too low
by about 7  × .</p><p class="p">From source-apportioned model results, we found most of the CMAQ-VBS modeled
POA at the Pasadena CalNex site was attributable to meat cooking emissions
(48 %, consistent with a substantial fraction of cooking OA in the
observations). This is compared to 18 % from gasoline vehicle emissions,
13 % from biomass burning (in the form of residential wood combustion),
and 8 % from diesel vehicle emissions. All “other” inventoried emission
sources (e.g., industrial, point, and area sources) comprised the final
13 %. The CMAQ-VBS semivolatile POA treatment underpredicted AMS
hydrocarbon-like OA (HOA) + cooking-influenced OA (CIOA) at Pasadena by
a factor of 1.8 compared to a factor of 1.4 overprediction of POA in
CMAQ-AE6, but it did capture the AMS diurnal profile of HOA and CIOA well,
with the exception of the midday peak.</p><p class="p">Overall, the CMAQ-VBS with its semivolatile treatment of POA, SOA from intermediate volatility organic compounds (IVOCs),
and aging of SOA improves SOA model performance (though SOA formation
efficiency is still 1.6–2  ×  too low). However, continued efforts are
needed to better understand assumptions in the parameterization (e.g., SOA
aging) and provide additional certainty to how best to apply existing
emission inventories in a framework that treats POA as semivolatile, which
currently degrades existing model performance at routine monitoring networks.
The VBS and other approaches (e.g., AE6) require additional work to
appropriately incorporate  IVOC
emissions and subsequent SOA formation.</p></abstract-html>
<ref-html id="bib1.bib1"><label>Ahmadov et al.(2012)Ahmadov, McKeen, Robinson, Bahreini, Middlebrook,
Gouw, Meagher, Hsie, Edgerton, Shaw et al.</label><mixed-citation>
Ahmadov, R., McKeen, S., Robinson, A., Bahreini, R., Middlebrook, A.,
Gouw, J. D., Meagher, J., Hsie, E.-Y., Edgerton, E., Shaw, S., and Trainer,
M.: A volatility basis set model for summertime secondary organic aerosols
over the eastern United States in 2006, J. Geophys. Res.-Atmos., 117, D06301, <a href="http://dx.doi.org/10.1029/2011JD016831" target="_blank">doi:10.1029/2011JD016831</a>,
2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>Aiken et al.(2009)Aiken, Salcedo, Cubison, Huffman, DeCarlo, Ulbrich,
Docherty, Sueper, Kimmel, Worsnop, Trimborn, Northway, Stone, Schauer,
Volkamer, Fortner, de Foy, Wang, Laskin, Shutthanandan, Zheng, Zhang,
Gaffney, Marley, Paredes-Miranda, Arnott, Molina, Sosa, and
Jimenez</label><mixed-citation>
Aiken, A. C., Salcedo, D., Cubison, M. J.,
Huffman, J. A., DeCarlo, P. F., Ulbrich, I. M., Docherty, K. S., Sueper, D.,
Kimmel, J. R., Worsnop, D. R., Trimborn, A., Northway, M., Stone, E. A.,
Schauer, J. J., Volkamer, R. M., Fortner, E., de Foy, B., Wang, J.,
Laskin, A., Shutthanandan, V., Zheng, J., Zhang, R., Gaffney, J.,
Marley, N. A., Paredes-Miranda, G., Arnott, W. P., Molina, L. T., Sosa, G.,
and Jimenez, J. L.: Mexico City aerosol analysis during MILAGRO using high
resolution aerosol mass spectrometry at the urban supersite (T0) – Part 1:
Fine particle composition and organic source apportionment, Atmos. Chem.
Phys., 9, 6633–6653,
doi:<a href="http://dx.doi.org/10.5194/acp-9-6633-2009" target="_blank">10.5194/acp-9-6633-2009</a>,
2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Allan et al.(2010)Allan, Williams, Morgan, Martin, Flynn, Lee, Nemitz,
Phillips, Gallagher, and Coe</label><mixed-citation>
Allan, J. D., Williams, P. I., Morgan, W. T., Martin, C. L., Flynn, M. J.,
Lee, J., Nemitz, E., Phillips, G. J., Gallagher, M. W., and Coe, H.:
Contributions from transport, solid fuel burning and cooking to primary
organic aerosols in two UK cities, Atmos. Chem. Phys., 10, 647–668,
doi:<a href="http://dx.doi.org/10.5194/acp-10-647-2010" target="_blank">10.5194/acp-10-647-2010</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Bahreini et al.(2012)Bahreini, Middlebrook, de Gouw, Warneke, Trainer,
Brock, Stark, Brown, Dube, Gilman, Hall, Holloway, Kuster, Perring, Prevot,
Schwarz, Spackman, Szidat, Wagner, Weber, Zotter, and Parrish</label><mixed-citation>
Bahreini, R., Middlebrook, A. M., de Gouw, J. A., Warneke, C., Trainer, M.,
Brock, C. A., Stark, H., Brown, S. S., Dube, W. P., Gilman, J. B., Hall, K.,
Holloway, J. S., Kuster, W. C., Perring, A. E., Prevot, A. S. H.,
Schwarz, J. P., Spackman, J. R., Szidat, S., Wagner, N. L., Weber, R. J.,
Zotter, P., and Parrish, D. D.: Gasoline emissions dominate over diesel in
formation of secondary organic aerosol mass, Geophys. Res. Lett., 39, L06805,
<a href="http://dx.doi.org/10.1029/2011GL050718" target="_blank">doi:10.1029/2011GL050718</a>, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Baker et al.(2013)Baker, Misenis, Obland, Ferrare, Scarino, and Kelly</label><mixed-citation>
Baker, K. R., Misenis, C., Obland, M. D., Ferrare, R. A., Scarino, A. J., and Kelly, J. T.:
Evaluation of surface and upper air fine scale WRF meteorological modeling of the May and June 2010 CalNex period in California,
Atmos. Environ.,
80, 299–309, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Baker et al.(2015)Baker, Carlton, Kleindienst, Offenberg, Beaver, Gentner,
Goldstein, Hayes, Jimenez, Gilman, de Gouw, Woody, Pye, Kelly, Lewandowski, Jaoui, Stevens, Brune, Lin, Rubitschun, and Surratt</label><mixed-citation>
Baker, K. R., Carlton, A. G., Kleindienst, T. E., Offenberg, J. H.,
Beaver, M. R., Gentner, D. R., Goldstein, A. H., Hayes, P. L.,
Jimenez, J. L., Gilman, J. B., de Gouw, J. A., Woody, M. C., Pye, H. O. T.,
Kelly, J. T., Lewandowski, M., Jaoui, M., Stevens, P. S., Brune, W. H.,
Lin, Y.-H., Rubitschun, C. L., and Surratt, J. D.: Gas and aerosol carbon in
California: comparison of measurements and model predictions in Pasadena and
Bakersfield, Atmos. Chem. Phys., 15, 5243–5258,
doi:<a href="http://dx.doi.org/10.5194/acp-15-5243-2015" target="_blank">10.5194/acp-15-5243-2015</a>,
2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>Bey et al.(2001)Bey, Jacob, Yantosca, Logan, Field, Fiore, Li, Liu, Mickley, and Schultz</label><mixed-citation>
Bey, I., Jacob, D. J., Yantosca, R. M., Logan, J. A., Field, B. D.,
Fiore, A. M., Li, Q., Liu, H. Y., Mickley, L. J., and Schultz, M. G.: Global
modeling of tropospheric chemistry with assimilated meteorology: model
description and evaluation, J. Geophys. Res.-Atmos., 106, 23073–23095, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>Brioude et al.(2013)Brioude, Angevine, Ahmadov, Kim, Evan, McKeen, Hsie, Frost, Neuman, Pollack et al.</label><mixed-citation>
Brioude, J., Angevine, W. M., Ahmadov, R., Kim, S.-W., Evan, S.,
McKeen, S. A., Hsie, E.-Y., Frost, G. J., Neuman, J. A., Pollack, I. B.,
Peischl, J., Ryerson, T. B., Holloway, J., Brown, S. S., Nowak, J. B.,
Roberts, J. M., Wofsy, S. C., Santoni, G. W., Oda, T., and Trainer, M.:
Top-down estimate of surface flux in the Los Angeles Basin using a mesoscale
inverse modeling technique: assessing anthropogenic emissions of CO, NO<sub><i>x</i></sub>
and CO<sub>2</sub> and their impacts, Atmos. Chem. Phys., 13, 3661–3677,
doi:<a href="http://dx.doi.org/10.5194/acp-13-3661-2013" target="_blank">10.5194/acp-13-3661-2013</a>,
2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Buchholz et al.(2013)Buchholz, Fallon, Zermeño, Bench, and
Schichtel</label><mixed-citation>
Buchholz, B. A., Fallon, S. J., Zermeño, P., Bench, G., and Schichtel,
B. A.: Anomalous elevated radiocarbon measurements of PM<sub>2.5</sub>, Nuclear
Instruments and Methods in Physics Research Section B: Beam Interactions with
Materials and Atoms, 294, 631–635, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Byun and Schere(2006)</label><mixed-citation>
Byun, D. and Schere, K. L.:
Review of the governing equations, computational algorithms, and other components of the Models-3 Community Multiscale Air Quality (CMAQ) modeling system,
Appl. Mech. Rev.,
59, 51–77, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Cappa et al.(2013)Cappa, Zhang, Loza, Craven, Yee, and
Seinfeld</label><mixed-citation>
Cappa, C. D., Zhang, X., Loza, C. L., Craven, J. S., Yee, L. D., and
Seinfeld, J. H.: Application of the Statistical Oxidation Model (SOM) to
Secondary Organic Aerosol formation from photooxidation of C<sub>12</sub> alkanes,
Atmos. Chem. Phys., 13, 1591–1606, <a href="http://dx.doi.org/10.5194/acp-13-1591-2013" target="_blank">doi:10.5194/acp-13-1591-2013</a>, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>Carlton and Baker(2011)</label><mixed-citation>
Carlton, A. G. and Baker, K. R.:
Photochemical modeling of the Ozark isoprene volcano: MEGAN, BEIS, and their impacts on air quality predictions,
Environ. Sci. Technol.,
45, 4438–4445, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>Carlton et al.(2010)Carlton, Bhave, Napelenok, Edney, Sarwar, Pinder, Pouliot, and Houyoux</label><mixed-citation>
Carlton, A. G., Bhave, P. V., Napelenok, S. L., Edney, E. D., Sarwar, G., Pinder, R. W., Pouliot, G. A., and Houyoux, M.:
Model representation of secondary organic aerosol in CMAQv4.7,
Environ. Sci. Technol.,
44, 8553–8560, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Chan et al.(2009)Chan, Kautzman, Chhabra, Surratt, Chan, Crounse,
Kürten, Wennberg, Flagan, and Seinfeld</label><mixed-citation>
Chan, A. W. H., Kautzman, K. E., Chhabra, P. S., Surratt, J. D., Chan, M. N.,
Crounse, J. D., Kürten, A., Wennberg, P. O., Flagan, R. C., and Seinfeld,
J. H.: Secondary organic aerosol formation from photooxidation of naphthalene
and alkylnaphthalenes: implications for oxidation of intermediate volatility
organic compounds (IVOCs), Atmos. Chem. Phys., 9, 3049–3060,
<a href="http://dx.doi.org/10.5194/acp-9-3049-2009" target="_blank">doi:10.5194/acp-9-3049-2009</a>, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Chhabra et al.(2011)Chhabra, Ng, Canagaratna, Corrigan, Russell,
Worsnop, Flagan, and Seinfeld</label><mixed-citation>
Chhabra, P. S., Ng, N. L., Canagaratna, M. R., Corrigan, A. L., Russell, L.
M., Worsnop, D. R., Flagan, R. C., and Seinfeld, J. H.: Elemental composition
and oxidation of chamber organic aerosol, Atmos. Chem. Phys., 11, 8827–8845,
<a href="http://dx.doi.org/10.5194/acp-11-8827-2011" target="_blank">doi:10.5194/acp-11-8827-2011</a>, 2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Craven et al.(2013)Craven, Metcalf, Bahreini, Middlebrook, Hayes, Duong, Sorooshian, Jimenez, Flagan, and Seinfeld</label><mixed-citation>
Craven, J. S., Metcalf, A. R., Bahreini, R., Middlebrook, A., Hayes, P. L.,
Duong, H. T., Sorooshian, A., Jimenez, J. L., Flagan, R. C., and
Seinfeld, J. H.: Los Angeles Basin airborne organic aerosol characterization
during CalNex, J. Geophys. Res.-Atmos., 118, 11453–11467, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>DeCarlo et al.(2010)DeCarlo, Ulbrich, Crounse, de Foy, Dunlea, Aiken, Knapp, Wienhemier, Campos, Wennberg, et  al.</label><mixed-citation>
DeCarlo, P. F., Ulbrich, I. M., Crounse, J., de Foy, B., Dunlea, E. J.,
Aiken, A. C., Knapp, D., Weinheimer, A. J., Campos, T., Wennberg, P. O., and
Jimenez, J. L.: Investigation of the sources and processing of organic
aerosol over the Central Mexican Plateau from aircraft measurements during
MILAGRO, Atmos. Chem. Phys., 10, 5257–5280,
doi:<a href="http://dx.doi.org/10.5194/acp-10-5257-2010" target="_blank">10.5194/acp-10-5257-2010</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>De Gouw and Jimenez(2009)</label><mixed-citation>
De Gouw, J. and Jimenez, J.:
Organic aerosols in the Earth's atmosphere,
Environ. Sci. Technol.,
43, 7614–7618, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>De Gouw et al.(2008)De Gouw, Brock, Atlas, Bates, Fehsenfeld, Goldan, Holloway, Kuster, Lerner, Matthew et al.</label><mixed-citation>
De Gouw, J., Brock, C., Atlas, E., Bates, T., Fehsenfeld, F., Goldan, P.,
Holloway, J., Kuster, W., Lerner, B., Matthew, B., Middlebrook, A., Onasch,
T., Peltier, R., Quinn, P., Senff, C., Stohl, A., Sullivan, A., Trainer, M.,
Warneke, C., Weber, R., and Williams, E.: Sources of particulate matter in
the northeastern United States in summer: 1. Direct emissions and secondary
formation of organic matter in urban plumes, J. Geophys. Res.-Atmos., 113,
D08301, <a href="http://dx.doi.org/10.1029/2007JD009243" target="_blank">doi:10.1029/2007JD009243</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>Docherty et al.(2008)Docherty, Stone, Ulbrich, DeCarlo, Snyder, Schauer, Peltier, Weber, Murphy, Seinfeld, Grover, Eatough, and Jimenez</label><mixed-citation>
Docherty, K. S., Stone, E. A., Ulbrich, I. M., DeCarlo, P. F., Snyder, D. C.,
Schauer, J. J., Peltier, R. E., Weber, R. J., Murphy, S. M., Seinfeld, J. H.,
Grover, B. D., Eatough, D. J., and Jimenez, J. L.: Apportionment of primary
and secondary organic aerosols in southern California during the 2005 Study
of Organic Aerosols in Riverside (SOAR-1), Environ. Sci. Technol., 42,
7655–7662, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>Donahue et al.(2006)Donahue, Robinson, Stanier, and Pandis</label><mixed-citation>
Donahue, N., Robinson, A., Stanier, C., and Pandis, S.:
Coupled partitioning, dilution, and chemical aging of semivolatile organics,
Environ. Sci. Technol.,
40, 2635–2643, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>Donahue et al.(2013)Donahue, Chuang, Epstein, Kroll, Worsnop, Robinson, Adams, and Pandis</label><mixed-citation>
Donahue, N., Chuang, W., Epstein, S., Kroll, J., Worsnop, D., Robinson, A.,
Adams, P., and Pandis, S.: Why do organic aerosols exist? Understanding
aerosol lifetimes using the two-dimensional volatility basis set, Environ.
Chem., 10, 151–157, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>Donahue et al.(2012)Donahue, Henry, Mentel, Kiendler-Scharr, Spindler, Bohn, Brauers, Dorn, Fuchs, Tillmann et al.</label><mixed-citation>
Donahue, N. M., Henry, K. M., Mentel, T. F., Kiendler-Scharr, A.,
Spindler, C., Bohn, B., Brauers, T., Dorn, H. P., Fuchs, H.,Tillmann, R.,
Wahner, A., Saathoff, H., Naumann, K., Möhler, O., Leisner, T., Müller,
L., Rennig, M., Hoffmann, T., Salo, K., Hallquist, M., Frosch, M., Bilde, M.,
Tritscher, T., Barmet, P., Praplan, A., DeCarlo, P., Dommen, J.,
Prérvôt, A., and Baltensperger, U.: Aging of biogenic secondary
organic aerosol via gas-phase OH radical reactions, P. Natl. Acad. Sci. USA,
109, 13503–13508, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>Dzepina et al.(2009)Dzepina, Volkamer, Madronich, Tulet, Ulbrich, Zhang, Cappa, Ziemann, and Jimenez</label><mixed-citation>
Dzepina, K., Volkamer, R. M., Madronich, S., Tulet, P., Ulbrich, I. M.,
Zhang, Q., Cappa, C. D., Ziemann, P. J., and Jimenez, J. L.: Evaluation of
recently-proposed secondary organic aerosol models for a case study in Mexico
City, Atmos. Chem. Phys., 9, 5681–5709,
doi:<a href="http://dx.doi.org/10.5194/acp-9-5681-2009" target="_blank">10.5194/acp-9-5681-2009</a>,
2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>Ensberg et al.(2014)Ensberg, Hayes, Jimenez, Gilman, Kuster, de Gouw, Holloway, Gordon, Jathar, Robinson, and Seinfeld</label><mixed-citation>
Ensberg, J. J., Hayes, P. L., Jimenez, J. L., Gilman, J. B., Kuster, W. C.,
de Gouw, J. A., Holloway, J. S., Gordon, T. D., Jathar, S., Robinson, A. L.,
and Seinfeld, J. H.: Emission factor ratios, SOA mass yields, and the impact
of vehicular emissions on SOA formation, Atmos. Chem. Phys., 14, 2383–2397,
doi:<a href="http://dx.doi.org/10.5194/acp-14-2383-2014" target="_blank">10.5194/acp-14-2383-2014</a>,
2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>Foley et al.(2010)Foley, Roselle, Appel, Bhave, Pleim, Otte, Mathur, Sarwar, Young, Gilliam et al.</label><mixed-citation>
Foley, K. M., Roselle, S. J., Appel, K. W., Bhave, P. V., Pleim, J. E.,
Otte, T. L., Mathur, R., Sarwar, G., Young, J. O., Gilliam, R. C.,
Nolte, C. G., Kelly, J. T., Gilliland, A. B., and Bash, J. O.: Incremental
testing of the Community Multiscale Air Quality (CMAQ) modeling system
version 4.7, Geosci. Model Dev., 3, 205–226,
doi:<a href="http://dx.doi.org/10.5194/gmd-3-205-2010" target="_blank">10.5194/gmd-3-205-2010</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>Fountoukis et al.(2011)Fountoukis, Racherla, Denier Van Der Gon, Polymeneas, Charalampidis, Pilinis, Wiedensohler, Dall'Osto, O'Dowd, and Pandis</label><mixed-citation>
Fountoukis, C., Racherla, P. N., Denier van der Gon, H. A. C.,
Polymeneas, P., Charalampidis, P. E., Pilinis, C., Wiedensohler, A.,
Dall'Osto, M., O'Dowd, C., and Pandis, S. N.: Evaluation of a
three-dimensional chemical transport model (PMCAMx) in the European domain
during the EUCAARI May 2008 campaign, Atmos. Chem. Phys., 11, 10331–10347,
doi:<a href="http://dx.doi.org/10.5194/acp-11-10331-2011" target="_blank">10.5194/acp-11-10331-2011</a>,
2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>Freutel et al.(2013)Freutel, Schneider, Drewnick, von der Weiden-Reinmüller, Crippa, Prévôt, Baltensperger, Poulain, Wiedensohler, Sciare et al.</label><mixed-citation>
Freutel, F., Schneider, J., Drewnick, F.,
von der Weiden-Reinmüller, S.-L., Crippa, M., Prévôt, A. S. H.,
Baltensperger, U., Poulain, L., Wiedensohler, A., Sciare, J.,
Sarda-Estève, R., Burkhart, J. F., Eckhardt, S., Stohl, A., Gros, V.,
Colomb, A., Michoud, V., Doussin, J. F., Borbon, A., Haeffelin, M.,
Morille, Y., Beekmann, M., and Borrmann, S.: Aerosol particle measurements at
three stationary sites in the megacity of Paris during summer 2009:
meteorology and air mass origin dominate aerosol particle composition and
size distribution, Atmos. Chem. Phys., 13, 933–959,
doi:<a href="http://dx.doi.org/10.5194/acp-13-933-2013" target="_blank">10.5194/acp-13-933-2013</a>,
2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>Gentner et al.(2012)Gentner, Isaacman, Worton, Chan, Dallmann, Davis, Liu, Day, Russell, Wilson, Weber, Guha, Harley, and Goldstein</label><mixed-citation>
Gentner, D. R., Isaacman, G., Worton, D. R., Chan, A. W. H., Dallmann, T. R.,
Davis, L., Liu, S., Day, D. A., Russell, L. M., Wilson, K. R., Weber, R.,
Guha, A., Harley, R. A., and Goldstein, A. H.: Elucidating secondary organic
aerosol from diesel and gasoline vehicles through detailed characterization
of organic carbon emissions, P. Natl. Acad. Sci. USA, 109, 18318–18323,
2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>Grieshop et al.(2009)Grieshop, Logue, Donahue, and Robinson</label><mixed-citation>
Grieshop, A. P., Logue, J. M., Donahue, N. M., and Robinson, A. L.:
Laboratory investigation of photochemical oxidation of organic aerosol from
wood fires 1: measurement and simulation of organic aerosol evolution, Atmos.
Chem. Phys., 9, 1263–1277,
doi:<a href="http://dx.doi.org/10.5194/acp-9-1263-2009" target="_blank">10.5194/acp-9-1263-2009</a>,
2009.

</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>Hayes et al.(2013)Hayes, Ortega, Cubison, Froyd, Zhao, Cliff, Hu, Toohey,
Flynn, Lefer, Grossberg, Alvarez, Rappenglück, Taylor, Allan, Holloway, Gilman,
Kuster, de Gouw, Massoli, Zhang, Liu, Weber, Corrigan, Russell, Isaacman, Worton,
Kreisberg, Goldstein, Thalman, Waxman, Volkamer, Lin, Surratt, Kleindienst, Offenberg, Dusanter, Griffith, Stevens, Brioude, Angevine, and Jimenez</label><mixed-citation>
Hayes, P. L., Ortega, A. M., Cubison, M. J., Froyd, K. D., Zhao, Y.,
Cliff, S. S., Hu, W. W., Toohey, D. W., Flynn, J. H., Lefer, B. L.,
Grossberg, N., Alvarez, S., Rappenglück, B., Taylor, J. W., Allan, J. D.,
Holloway, J. S., Gilman, J. B., Kuster, W. C., de Gouw, J. A., Massoli, P.,
Zhang, X., Liu, J., Weber, R. J., Corrigan, A. L., Russell, L. M.,
Isaacman, G., Worton, D. R., Kreisberg, N. M., Goldstein, A. H., Thalman, R.,
Waxman, E. M., Volkamer, R., Lin, Y. H., Surratt, J. D., Kleindienst, T. E.,
Offenberg, J. H., Dusanter, S., Griffith, S., Stevens, P. S., Brioude, J.,
Angevine, W. M., and Jimenez, J. L.: Organic aerosol composition and sources
in Pasadena, California, during the 2010 CalNex campaign, J. Geophys.
Res.-Atmos., 118, 9233–9257, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>Hayes et al.(2015)Hayes, Carlton, Baker, Ahmadov, Washenfelder, Alvarez, Rappenglück, Gilman, Kuster, de Gouw, Zotter, Prevot, Szidat, Kleindienst, Offenberg, Ma, and Jimenez</label><mixed-citation>
Hayes, P. L., Carlton, A. G., Baker, K. R., Ahmadov, R., Washenfelder, R. A.,
Alvarez, S., Rappenglück, B., Gilman, J. B., Kuster, W. C.,
de Gouw, J. A., Zotter, P., Prévôt, A. S. H., Szidat, S.,
Kleindienst, T. E., Offenberg, J. H., Ma, P. K., and Jimenez, J. L.: Modeling
the formation and aging of secondary organic aerosols in Los Angeles during
CalNex 2010, Atmos. Chem. Phys., 15, 5773–5801,
doi:<a href="http://dx.doi.org/10.5194/acp-15-5773-2015" target="_blank">10.5194/acp-15-5773-2015</a>,
2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>Henderson et al.(2014)Henderson, Akhtar, Pye, Napelenok, and Hutzell</label><mixed-citation>
Henderson, B. H., Akhtar, F., Pye, H. O. T., Napelenok, S. L., and
Hutzell, W. T.: A database and tool for boundary conditions for regional air
quality modeling: description and evaluation, Geosci. Model Dev., 7,
339–360,
doi:<a href="http://dx.doi.org/10.5194/gmd-7-339-2014" target="_blank">10.5194/gmd-7-339-2014</a>,
2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>Herndon et al.(2008)Herndon, Onasch, Wood, Kroll, Canagaratna, Jayne, Zavala, Knighton, Mazzoleni, Dubey et al.</label><mixed-citation>
Herndon, S. C., Onasch, T. B., Wood, E. C., Kroll, J. H., Canagaratna, M. R.,
Jayne, J. T., Zavala, M. A., Knighton, W. B., Mazzoleni, C., Dubey, M. K.,
Ulbrich, I., Jimenez, J., Seila, R., de Gouw, J., de Foy, B., Fast, J.,
Molina, L., Kolb, C., and Worsnop, D.: Correlation of secondary organic
aerosol with odd oxygen in Mexico City, Geophys. Res. Lett., 35, L15804,
<a href="http://dx.doi.org/10.1029/2008GL034058" target="_blank">doi:10.1029/2008GL034058</a>, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>Hersey et al.(2011)Hersey, Craven, Schilling, Metcalf, Sorooshian, Chan, Flagan, and Seinfeld</label><mixed-citation>
Hersey, S. P., Craven, J. S., Schilling, K. A., Metcalf, A. R.,
Sorooshian, A., Chan, M. N., Flagan, R. C., and Seinfeld, J. H.: The Pasadena
Aerosol Characterization Observatory (PACO): chemical and physical analysis
of the Western Los Angeles basin aerosol, Atmos. Chem. Phys., 11, 7417–7443,
doi:<a href="http://dx.doi.org/10.5194/acp-11-7417-2011" target="_blank">10.5194/acp-11-7417-2011</a>,
2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>Hildebrandt et al.(2009)Hildebrandt, Donahue, and Pandis</label><mixed-citation>
Hildebrandt, L., Donahue, N. M., and Pandis, S. N.: High formation of
secondary organic aerosol from the photo-oxidation of toluene, Atmos. Chem.
Phys., 9, 2973–2986,
doi:<a href="http://dx.doi.org/10.5194/acp-9-2973-2009" target="_blank">10.5194/acp-9-2973-2009</a>,
2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>Hodzic and Jimenez(2011)</label><mixed-citation>
Hodzic, A. and Jimenez, J. L.: Modeling anthropogenically controlled
secondary organic aerosols in a megacity: a simplified framework for global
and climate models, Geosci. Model Dev., 4, 901–917,
doi:<a href="http://dx.doi.org/10.5194/gmd-4-901-2011" target="_blank">10.5194/gmd-4-901-2011</a>,
2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>Hodzic et al.(2010)Hodzic, Jimenez, Madronich, Canagaratna, DeCarlo, Kleinman, and Fast</label><mixed-citation>
Hodzic, A., Jimenez, J. L., Madronich, S., Canagaratna, M. R.,
DeCarlo, P. F., Kleinman, L., and Fast, J.: Modeling organic aerosols in a
megacity: potential contribution of semi-volatile and intermediate volatility
primary organic compounds to secondary organic aerosol formation, Atmos.
Chem. Phys., 10, 5491–5514,
doi:<a href="http://dx.doi.org/10.5194/acp-10-5491-2010" target="_blank">10.5194/acp-10-5491-2010</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>Houyoux et al.(2000)Houyoux, Vukovich, Coats, Wheeler, and Kasibhatla</label><mixed-citation>
Houyoux, M. R., Vukovich, J. M., Coats, C. J., Wheeler, N. J., and
Kasibhatla, P. S.: Emission inventory development and processing for the
Seasonal Model for Regional Air Quality (SMRAQ) project, J. Geophys.
Res.-Atmos., 105, 9079–9090, 2000.
</mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>Huang et al.(2010)Huang, He, Hu, Canagaratna, Sun, Zhang, Zhu, Xue, Zeng, Liu et al.</label><mixed-citation>
Huang, X.-F., He, L.-Y., Hu, M., Canagaratna, M. R., Sun, Y., Zhang, Q.,
Zhu, T., Xue, L., Zeng, L.-W., Liu, X.-G., Zhang, Y.-H., Jayne, J. T.,
Ng, N. L., and Worsnop, D. R.: Highly time-resolved chemical characterization
of atmospheric submicron particles during 2008 Beijing Olympic Games using an
Aerodyne High-Resolution Aerosol Mass Spectrometer, Atmos. Chem. Phys., 10,
8933–8945,
doi:<a href="http://dx.doi.org/10.5194/acp-10-8933-2010" target="_blank">10.5194/acp-10-8933-2010</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>Huffman et al.(2009)Huffman, Docherty, Mohr, Cubison, Ulbrich, Ziemann, Onasch, and Jimenez</label><mixed-citation>
Huffman, J., Docherty, K., Mohr, C., Cubison, M., Ulbrich, I., Ziemann, P., Onasch, T., and Jimenez, J.:
Chemically-resolved volatility measurements of organic aerosol from different sources,
Environ. Sci. Technol.,
43, 5351–5357, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>Jathar et al.(2014)Jathar, Gordon, Hennigan, Pye, Pouliot, Adams, Donahue, and Robinson</label><mixed-citation>
Jathar, S. H., Gordon, T. D., Hennigan, C. J., Pye, H. O. T., Pouliot, G., Adams, P. J., Donahue, N. M., and Robinson, A. L.:
Unspeciated organic emissions from combustion sources and their influence on the secondary organic aerosol budget in the United States,
P. Natl. Acad. Sci. USA,
111, 10473–10478, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>Kelly et al.(2014)Kelly, Baker, Nowak, Murphy, Markovic, VandenBoer, Ellis, Neuman, Weber, Roberts et al.</label><mixed-citation>
Kelly, J. T., Baker, K. R., Nowak, J. B., Murphy, J. G., Markovic, M. Z.,
VandenBoer, T. C., Ellis, R. A., Neuman, J. A., Weber, R. J., Roberts, J.
M.,, Veres, P. R., de Gouw, J. A., Beaver, M. R., Newman, S., and Misenis,
C.: Fine-scale simulation of ammonium and nitrate over the South Coast Air
Basin and San Joaquin Valley of California during CalNex-2010, J. Geophys.
Res.-Atmos., 119, 3600–3614, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>Kim et al.(2015)Kim, Jacob, Fisher, Travis, Yu, Zhu, Yantosca, Sulprizio, Jimenez, Campuzano et al.</label><mixed-citation>
Kim, P. S., Jacob, D. J., Fisher, J. A., Travis, K., Yu, K., Zhu, L.,
Yantosca, R. M., Sulprizio, M. P., Jimenez, J. L., Campuzano-Jost, P.,
Froyd, K. D., Liao, J., Hair, J. W., Fenn, M. A., Butler, C. F.,
Wagner, N. L., Gordon, T. D., Welti, A., Wennberg, P. O., Crounse, J. D., St.
Clair, J. M., Teng, A. P., Millet, D. B., Schwarz, J. P., Markovic, M. Z.,
and Perring, A. E.: Sources, seasonality, and trends of southeast US aerosol:
an integrated analysis of surface, aircraft, and satellite observations with
the GEOS-Chem chemical transport model, Atmos. Chem. Phys., 15, 10411–10433,
doi:<a href="http://dx.doi.org/10.5194/acp-15-10411-2015" target="_blank">10.5194/acp-15-10411-2015</a>,
2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>Kleinman et al.(2008)Kleinman, Springston, Daum, Lee, Nunnermacker, Senum, Wang, Weinstein-Lloyd, Alexander, Hubbe et al.</label><mixed-citation>
Kleinman, L. I., Springston, S. R., Daum, P. H., Lee, Y.-N.,
Nunnermacker, L. J., Senum, G. I., Wang, J., Weinstein-Lloyd, J.,
Alexander, M. L., Hubbe, J., Ortega, J., Canagaratna, M. R., and Jayne, J.:
The time evolution of aerosol composition over the Mexico City plateau,
Atmos. Chem. Phys., 8, 1559–1575,
doi:<a href="http://dx.doi.org/10.5194/acp-8-1559-2008" target="_blank">10.5194/acp-8-1559-2008</a>,
2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>Koo et al.(2014)Koo, Knipping, and Yarwood</label><mixed-citation>
Koo, B., Knipping, E., and Yarwood, G.: 1.5-dimensional volatility basis set
approach for modeling organic aerosol in CAMx and CMAQ, Atmos. Environ., 95,
158–164, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>Lane et al.(2008)Lane, Donahue, and Pandis</label><mixed-citation>
Lane, T. E., Donahue, N. M., and Pandis, S. N.: Simulating secondary organic
aerosol formation using the volatility basis-set approach in a chemical
transport model, Atmos. Environ., 42, 7439–7451, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>Loza et al.(2012)Loza, Chhabra, Yee, Craven, Flagan, and
Seinfeld</label><mixed-citation>
Loza, C., Chhabra, P., Yee, L., Craven, J., Flagan, R., and Seinfeld, J.:
Chemical aging of m-xylene secondary organic aerosol: laboratory chamber
study, Atmos. Chem. Phys., 12, 151–167, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>May et al.(2013a)May, Levin, Hennigan, Riipinen, Lee, Collett, Jimenez, Kreidenweis, and Robinson</label><mixed-citation>
May, A. A., Levin, E. J., Hennigan, C. J., Riipinen, I., Lee, T.,
Collett, J. L., Jimenez, J. L., Kreidenweis, S. M., and Robinson, A. L.:
Gas-particle partitioning of primary organic aerosol emissions: 3. Biomass
burning, J. Geophys. Res.-Atmos., 118, 11–327, 2013a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>May et al.(2013b)May, Presto, Hennigan, Nguyen, Gordon, and Robinson</label><mixed-citation>
May, A. A., Presto, A. A., Hennigan, C. J., Nguyen, N. T., Gordon, T. D., and
Robinson, A. L.: Gas-particle partitioning of primary organic aerosol
emissions: 1. Gasoline vehicle exhaust, Atmos. Environ., 77, 128–139, 2013b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>May et al.(2013c)May, Presto, Hennigan, Nguyen, Gordon, and Robinson</label><mixed-citation>
May, A. A., Presto, A. A., Hennigan, C. J., Nguyen, N. T., Gordon, T. D., and
Robinson, A. L.: Gas-particle partitioning of primary organic aerosol
emissions: 2. Diesel vehicles, Environ. Sci. Technol., 47, 8288–8296, 2013c.
</mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>Mohr et al.(2012)Mohr, DeCarlo, Heringa, Chirico, Slowik, Richter, Reche, Alastuey, Querol, Seco, Penuelas, Jimenez, Crippa, Zimmermann, Baltensperger, and Prevot</label><mixed-citation>
Mohr, C., DeCarlo, P. F., Heringa, M. F., Chirico, R., Slowik, J. G.,
Richter, R., Reche, C., Alastuey, A., Querol, X., Seco, R., Peñuelas, J.,
Jiménez, J. L., Crippa, M., Zimmermann, R., Baltensperger, U., and
Prévôt, A. S. H.: Identification and quantification of organic
aerosol from cooking and other sources in Barcelona using aerosol mass
spectrometer data, Atmos. Chem. Phys., 12, 1649–1665,
doi:<a href="http://dx.doi.org/10.5194/acp-12-1649-2012" target="_blank">10.5194/acp-12-1649-2012</a>,
2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>Morino et al.(2014)Morino, Tanabe, Sato, and Ohara</label><mixed-citation>
Morino, Y., Tanabe, K., Sato, K., and Ohara, T.:
Secondary organic aerosol model intercomparison based on secondary organic aerosol to odd oxygen ratio in Tokyo,
J. Geophys. Res.-Atmos.,
119, 13489–13505, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>Murphy and Pandis(2009)</label><mixed-citation>
Murphy, B. N. and Pandis, S. N.: Simulating the formation of semivolatile
primary and secondary organic aerosol in a regional chemical transport model,
Environ. Sci. Technol., 43, 4722–4728, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>Ng et al.(2007)Ng, Kroll, Chan, Chhabra, Flagan, and
Seinfeld</label><mixed-citation>
Ng, N., Kroll, J., Chan, A., Chhabra, P., Flagan, R., and Seinfeld, J.:
Secondary organic aerosol formation from m-xylene, toluene, and benzene,
Atmos. Chem. Phys., 7, 3909–3922, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>Pye and Seinfeld(2010)</label><mixed-citation>
Pye, H. O. T. and Seinfeld, J. H.: A global perspective on aerosol from
low-volatility organic compounds, Atmos. Chem. Phys., 10, 4377–4401,
doi:<a href="http://dx.doi.org/10.5194/acp-10-4377-2010" target="_blank">10.5194/acp-10-4377-2010</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>Robinson et al.(2007)Robinson, Donahue, Shrivastava, Weitkamp, Sage, Grieshop, Lane, Pierce, and Pandis</label><mixed-citation>
Robinson, A. L., Donahue, N. M., Shrivastava, M. K., Weitkamp, E. A.,
Sage, A. M., Grieshop, A. P., Lane, T. E., Pierce, J. R., and Pandis, S. N.:
Rethinking organic aerosols: Semivolatile emissions and photochemical aging,
Science, 315, 1259–1262, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>Ryerson et al.(2013)Ryerson, Andrews, Angevine, Bates, Brock, Cairns,
Cohen, Cooper, de Gouw, Fehsenfeld, Ferrare, Fischer, Flagan, Goldstein, Hair,
Hardesty, Hostetler, Jimenez, Langford, McCauley, McKeen, Molina, Nenes, Oltmans,
Parrish, Pederson, Pierce, Prather, Quinn, Seinfeld, Senff, Sorooshian, Stutz, Surratt, Trainer, Volkamer, Williams, and Wofsy</label><mixed-citation>
Ryerson, T. B., Andrews, A. E., Angevine, W. M., Bates, T. S., Brock, C. A.,
Cairns, B., Cohen, R. C., Cooper, O. R., de Gouw, J. A., Fehsenfeld, F. C.,
Ferrare, R. A., Fischer, M. L., Flagan, R. C., Goldstein, A. H., Hair, J. W.,
Hardesty, R. M., Hostetler, C. A., Jimenez, J. L., Langford, A. O.,
McCauley, E., McKeen, S. A., Molina, L. T., Nenes, A., Oltmans, S. J.,
Parrish, D. D., Pederson, J. R., Pierce, R. B., Prather, K., Quinn, P. K.,
Seinfeld, J. H., Senff, C. J., Sorooshian, A., Stutz, J., Surratt, J. D.,
Trainer, M., Volkamer, R., Williams, E. J., and Wofsy, S. C.: The 2010
California Research at the Nexus of Air Quality and Climate Change (CalNex)
field study, J. Geophys. Res.-Atmos., 118, 5830–5866, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>Shrivastava et al.(2011)Shrivastava, Fast, Easter, Gustafson Jr, Zaveri, Jimenez, Saide, and Hodzic</label><mixed-citation>
Shrivastava, M., Fast, J., Easter, R., Gustafson Jr., W. I., Zaveri, R. A.,
Jimenez, J. L., Saide, P., and Hodzic, A.: Modeling organic aerosols in a
megacity: comparison of simple and complex representations of the volatility
basis set approach, Atmos. Chem. Phys., 11, 6639–6662,
doi:<a href="http://dx.doi.org/10.5194/acp-11-6639-2011" target="_blank">10.5194/acp-11-6639-2011</a>,
2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>Simon and Bhave(2012)</label><mixed-citation>
Simon, H. and Bhave, P. V.: Simulating the ree of oxidation in atmospheric
organic particles, Environ. Sci. Technol., 46, 331–339, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>Skamarock and Klemp(2008)</label><mixed-citation>
Skamarock, W. C. and Klemp, J. B.: A time-split nonhydrostatic atmospheric
model for weather research and forecasting applications, J. Comput. Phys.,
227, 3465–3485, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib62"><label>Sun et al.(2011)Sun, Zhang, Schwab, Demerjian, Chen, Bae, Hung, Hogrefe, Frank, Rattigan et al.</label><mixed-citation>
Sun, Y.-L., Zhang, Q., Schwab, J. J., Demerjian, K. L., Chen, W.-N.,
Bae, M.-S., Hung, H.-M., Hogrefe, O., Frank, B., Rattigan, O. V., and
Lin, Y.-C.: Characterization of the sources and processes of organic and
inorganic aerosols in New York city with a high-resolution time-of-flight
aerosol mass apectrometer, Atmos. Chem. Phys., 11, 1581–1602,
doi:<a href="http://dx.doi.org/10.5194/acp-11-1581-2011" target="_blank">10.5194/acp-11-1581-2011</a>,
2011.
</mixed-citation></ref-html>
<ref-html id="bib1.bib63"><label>Tsimpidi et al.(2010)Tsimpidi, Karydis, Zavala, Lei, Molina, Ulbrich, Jimenez, and Pandis</label><mixed-citation>
Tsimpidi, A. P., Karydis, V. A., Zavala, M., Lei, W., Molina, L.,
Ulbrich, I. M., Jimenez, J. L., and Pandis, S. N.: Evaluation of the
volatility basis-set approach for the simulation of organic aerosol formation
in the Mexico City metropolitan area, Atmos. Chem. Phys., 10, 525–546,
doi:<a href="http://dx.doi.org/10.5194/acp-10-525-2010" target="_blank">10.5194/acp-10-525-2010</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib64"><label>US Environmental Protection Agency(2014a)</label><mixed-citation>
US Environmental Protection Agency: 2011 National Emission Inventory,
available at: <a href="https://www3.epa.gov/ttnchie1/net/2011inventory.html" target="_blank">https://www3.epa.gov/ttnchie1/net/2011inventory.html</a>
(last access: 15 June 2015),
2014a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib65"><label>US Environmental Protection Agency(2014b)</label><mixed-citation>
US Environmental Protection Agency:
North American Emissions Inventories – Mexico, available at:
<a href="https://www3.epa.gov/ttnchie1/net/mexico.html" target="_blank">https://www3.epa.gov/ttnchie1/net/mexico.html</a>
(last access: 10 June 2015),
2014b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib66"><label>Volkamer et al.(2006)Volkamer, Jimenez, San Martini, Dzepina, Zhang, Salcedo, Molina, Worsnop, and Molina</label><mixed-citation>
Volkamer, R., Jimenez, J. L., San Martini, F., Dzepina, K., Zhang, Q., Salcedo, D., Molina, L. T., Worsnop, D. R., and Molina, M. J.:
Secondary organic aerosol formation from anthropogenic air pollution: rapid and higher than expected,
Geophys. Res. Lett.,
33, L17811, <a href="http://dx.doi.org/10.1029/2006GL026899" target="_blank">doi:10.1029/2006GL026899</a>, 2006.
</mixed-citation></ref-html>
<ref-html id="bib1.bib67"><label>Wood et al.(2010)Wood, Canagaratna, Herndon, Onasch, Kolb, Worsnop, Kroll, Knighton, Seila, Zavala et al.</label><mixed-citation>
Wood, E. C., Canagaratna, M. R., Herndon, S. C., Onasch, T. B., Kolb, C. E.,
Worsnop, D. R., Kroll, J. H., Knighton, W. B., Seila, R., Zavala, M.,
Molina, L. T., DeCarlo, P. F., Jimenez, J. L., Weinheimer, A. J.,
Knapp, D. J., Jobson, B. T., Stutz, J., Kuster, W. C., and Williams, E. J.:
Investigation of the correlation between odd oxygen and secondary organic
aerosol in Mexico City and Houston, Atmos. Chem. Phys., 10, 8947–8968,
doi:<a href="http://dx.doi.org/10.5194/acp-10-8947-2010" target="_blank">10.5194/acp-10-8947-2010</a>,
2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib68"><label>Yarwood et al.(2005)Yarwood, Rao, Yocke, and Whitten</label><mixed-citation>
Yarwood, G., Rao, S., Yocke, M., and Whitten, G. Z.:
Updates to the Carbon Bond chemical Mechanism: CB05,
ENVIRON International Corporation, Novato, CA, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib69"><label>Zhang et al.(2007)Zhang, Jimenez, Canagaratna, Allan, Coe, Ulbrich, Alfarra,
Takami, Middlebrook, Sun, Dzepina, Dunlea, Docherty, DeCarlo, Salcedo, Onasch, Jayne,
Miyoshi, Shimono, Hatakeyama, Takegawa, Kondo, Schneider, Drewnick, Borrmann, Weimer,
Demerjian, Williams, Bower, Bahreini, Cottrell, Griffin, Rautiainen, Sun, Zhang, and Worsnop</label><mixed-citation>
Zhang, Q., Jimenez, J. L., Canagaratna, M. R., Allan, J. D., Coe, H.,
Ulbrich, I., Alfarra, M. R., Takami, A., Middlebrook, A. M., Sun, Y. L.,
Dzepina, K., Dunlea, E., Docherty, K., DeCarlo, P. F., Salcedo, D.,
Onasch, T., Jayne, J. T., Miyoshi, T., Shimono, A., Hatakeyama, S.,
Takegawa, N., Kondo, Y., Schneider, J., Drewnick, F., Borrmann, S.,
Weimer, S., Demerjian, K., Williams, P., Bower, K., Bahreini, R.,
Cottrell, L., Griffin, R. J., Rautiainen, J., Sun, J. Y., Zhang, Y. M., and
Worsnop, D. R.: Ubiquity and dominance of oxygenated species in organic
aerosols in anthropogenically-influenced Northern Hemisphere midlatitudes,
Geophys. Res. Lett., 34, L13801, <a href="http://dx.doi.org/10.1029/2007GL029979" target="_blank">doi:10.1029/2007GL029979</a>, 2007.
</mixed-citation></ref-html>
<ref-html id="bib1.bib70"><label>Zhang et al.(2015)Zhang, Beekmann, Freney, Sellegri, Pichon, Schwarzenboeck, Colomb, Bourrianne, Michoud, and Borbon</label><mixed-citation>
Zhang, Q. J., Beekmann, M., Freney, E., Sellegri, K., Pichon, J. M.,
Schwarzenboeck, A., Colomb, A., Bourrianne, T., Michoud, V., and Borbon, A.:
Formation of secondary organic aerosol in the Paris pollution plume and its
impact on surrounding regions, Atmos. Chem. Phys., 15, 13973–13992,
<a href="http://dx.doi.org/10.5194/acp-15-13973-2015" target="_blank">doi:10.5194/acp-15-13973-2015</a>, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib71"><label>Zhang et al.(2014)Zhang, Cappa, Jathar, McVay, Ensberg, Kleeman, and Seinfeld</label><mixed-citation>
Zhang, X., Cappa, C. D., Jathar, S. H., McVay, R. C., Ensberg, J. J., Kleeman, M. J., and Seinfeld, J. H.:
Influence of vapor wall loss in laboratory chambers on yields of secondary organic aerosol,
P. Natl. Acad. Sci. USA,
111, 5802–5807, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib72"><label>Zhao et al.(2015)Zhoa, Wang, Donahue, Chuang, Hildebrandt, Ng, Wang, and Hoa</label><mixed-citation>
Zhao, B., Wang, S., Donahue, N. M., Chuang, W., Hildebrandt Ruiz, L.,
Ng, N. L., Wang, Y., and Hao, J.: Evaluation of One-Dimensional and
Two-Dimensional Volatility Basis Sets in Simulating the Aging of Secondary
Organic Aerosol with Smog-Chamber Experiments, Environ. Sci. Technol., 49,
2245–2254, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib73"><label>Zhao et al.(2014)Zhao, Hennigan, May, Tkacik, de Gouw, Gilman, Kuster, Borbon, and Robinson</label><mixed-citation>
Zhao, Y., Hennigan, C. J., May, A. A., Tkacik, D. S., de Gouw, J. A., Gilman, J. B., Kuster, W., Borbon, A., and Robinson, A. L.:
Intermediate-volatility organic compounds: a large source of secondary organic aerosol,
Environ. Sci. Technol.,
48, 13743–13750, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib74"><label>Ziemann and Atkinson(2012)Ziemann and Atkinson</label><mixed-citation>
Ziemann, P. J. and Atkinson, R.: Kinetics, products, and mechanisms of
secondary organic aerosol formation, Chem. Soc. Rev., 41, 6582–6605, 2012.

</mixed-citation></ref-html>
<ref-html id="bib1.bib75"><label>Zotter et al.(2014)Zotter, El-Haddad, Zhang, Hayes, Zhang, Lin, Wacker, Schnelle-Kreis, Abbaszade, Zimmermann, Surratt, Weber, Jimenez, Szidat, Baltensperger, and Prevot</label><mixed-citation>
Zotter, P., El-Haddad, I., Zhang, Y. L., Hayes, P. L., Zhang, X. L.,
Lin, Y. H., Wacker, L., Schnelle-Kreis, J., Abbaszade, G., Zimmermann, R.,
Surratt, J. D., Weber, R., Jimenez, J. L., Szidat, S., Baltensperger, U., and
Prevot, A.: Diurnal cycle of fossil and nonfossil carbon using radiocarbon
analyses during CalNex, J. Geophys. Res.-Atmos., 119, 6818–6835, 2014.
</mixed-citation></ref-html>--></article>
