<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-16-3711-2016</article-id><title-group><article-title>Carbonyl sulfide exchange in soils for better estimates of ecosystem carbon uptake</article-title>
      </title-group><?xmltex \runningtitle{Carbonyl sulfide exchange in soils for better estimates of ecosystem carbon uptake}?><?xmltex \runningauthor{M.~E.~Whelan et~al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Whelan</surname><given-names>Mary E.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-2067-1835</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Hilton</surname><given-names>Timothy W.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-9575-9850</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Berry</surname><given-names>Joseph A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Berkelhammer</surname><given-names>Max</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8924-716X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Desai</surname><given-names>Ankur R.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-5226-6041</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Campbell</surname><given-names>J. Elliott</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Department of Environmental Engineering, University of California, Merced, Merced, CA, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Carnegie Institution for Science, Stanford, CA, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Earth and Environmental Sciences, University of Illinois Chicago, Chicago, IL, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Department of Atmospheric and Oceanic Sciences, University of Wisconsin, Madison, WI, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">M. E. Whelan (marywhelan@gmail.com)</corresp></author-notes><pub-date><day>21</day><month>March</month><year>2016</year></pub-date>
      
      <volume>16</volume>
      <issue>6</issue>
      <fpage>3711</fpage><lpage>3726</lpage>
      <history>
        <date date-type="received"><day>7</day><month>June</month><year>2015</year></date>
           <date date-type="rev-request"><day>6</day><month>August</month><year>2015</year></date>
           <date date-type="rev-recd"><day>23</day><month>February</month><year>2016</year></date>
           <date date-type="accepted"><day>25</day><month>February</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri>
<self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>


      <abstract>
    <p>Carbonyl sulfide (COS) measurements are one of the emerging tools to
better quantify gross primary production (GPP), the largest flux in
the global carbon cycle. COS is a gas with a similar structure to
<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>; COS uptake is thought to be a proxy for GPP. However,
soils are a potential source or sink of COS. This study presents
a framework for understanding soil–COS interactions. Excluding
wetlands, most of the few observations of isolated soils that have
been made show small uptake of atmospheric COS. Recently, a series
of studies at an agricultural site in the central United States
found soil COS production under hot conditions an order of magnitude
greater than fluxes at other sites. To investigate the extent of
this phenomenon, soils were collected from five new sites and incubated
in a variety of soil moisture and temperature states. We found that
soils from a desert, an oak savannah, a deciduous forest, and
a rainforest exhibited small COS fluxes, behavior resembling
previous studies. However, soil from an agricultural site in
Illinois, <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>800</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> away from the initial central US study
site, demonstrated comparably large soil fluxes under similar
conditions. These new data suggest that, for the most part, soil COS
interaction is negligible compared to plant uptake of COS. We
present a model that anticipates the large agricultural soil fluxes
so that they may be taken into account. While COS air-monitoring
data are consistent with the dominance of plant uptake, improved
interpretation of these data should incorporate the soil flux
parameterizations suggested here.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>As anthropogenic <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emissions continue increasing, it is
necessary to characterize the partitioning of carbon exchange
between atmospheric and terrestrial ecosystem reservoirs to predict
future <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> concentrations in the atmosphere (Wofsy,
2001). Large uncertainties remain in estimates of the amount of
carbon removed from the atmosphere by photosynthesis (Beer et al.,
2010), called gross primary productivity (GPP). This quantity is
essential for describing carbon–climate feedbacks and assessing
ecosystem-based <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> capture and storage projects. Using
measurements of carbonyl sulfide is one of several emerging
approaches to address large uncertainties in GPP estimates
(Berry et al., 2013; Campbell et al., 2008; Commane et al., 2013;
Montzka et al., 2007; Sandoval-Soto et al., 2005; Seibt et al., 2010;
Stimler et al., 2011; Suntharalingam et al., 2008). With a globally averaged tropospheric
mixing ratio of <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>500</mml:mn><mml:mo>±</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula> parts per trillion (ppt) (Montzka
et al., 2007), COS is the most abundant sulfur-containing gas in
Earth's atmosphere.  Both COS and <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> enter a plant through
leaf stomata. Whereas some <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is released again in
back-diffusion or in respiration, COS is irreversibly destroyed by
carbonic anhydrase (Protoschill-Krebs et al., 1996;
Schenk et al., 2004). Other enzymes such as RuBisCO can also destroy COS
(Protoschill-Krebs and Kesselmeier, 1992). In soils, algal populations are
expected to be smaller than bacterial populations (Wingate et al., 2009), and
COS uptake is generally attributed to carbonic anhydrase. Soil COS fluxes
potentially introduce large
uncertainties in estimating the COS leaf uptake flux from
atmospheric COS measurements (Maseyk et al., 2014).</p>
      <p>To date only three published studies have attempted to use COS
concentrations to calculate GPP over individual ecosystems (Asaf
et al., 2013; Billesbach et al., 2014; Blonquist et al., 2011). The
calculation is performed using this relationship:

              <disp-formula id="Ch1.E1" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mtext>GPP</mml:mtext><mml:mo>[</mml:mo><mml:mtext>COS</mml:mtext><mml:mo>]</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:msup><mml:mo>]</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mi>v</mml:mi><mml:mo>(</mml:mo><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>w</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

        <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the one-way flux of COS into plant leaves
in <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, GPP is the <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
assimilation by plants in <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, [COS]
and [<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] are ambient gas mixing ratios in
parts per trillion (ppt) and parts per million (ppm), respectively,
and the factor <inline-formula><mml:math display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula> is the experimentally determined ratio of
deposition velocities for COS and <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, a function of plant
type <inline-formula><mml:math display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>, radiation <inline-formula><mml:math display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, and water stress <inline-formula><mml:math display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>.</p>
      <p>Many of the plant physiological requirements involved in using COS
fluxes as a GPP proxy have been empirically investigated.
Stimler et al. (2010) confirmed the assumptions about in-leaf
processes and COS–<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> exchange that need to be met to use
COS as a tracer for GPP – i.e., COS co-diffuses with CO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> via the same
pathway in plant leaves, COS and <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> do not inhibit
one another at reaction sites with carbonic anhydrase, and emission
of COS by leaves is negligible. However, other studies have found
species-specific COS emissions by plants (Geng and Mu, 2006; Whelan
et al., 2013). For the most part, using COS to predict GPP at the
leaf level was comparable to other methods like <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">C</mml:mi><mml:mn>18</mml:mn></mml:msup><mml:mi mathvariant="normal">OO</mml:mi></mml:mrow></mml:math></inline-formula>
exchange (Seibt et al., 2010; Stimler et al., 2011).</p>
      <p>However, a problem arises when the <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:mi mathvariant="normal">COS</mml:mi><mml:mo>:</mml:mo><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> scheme is
applied to an ecosystem beyond the leaf scale. The uptake ratio is
called an ecosystem relative uptake (ERU) when the observation
scale encompasses plants and soils (Campbell et al., 2008) or
a soil relative uptake (SRU) when soils are observed or modeled
apart from plant systems (Berkelhammer et al., 2014).  Empirical
measurements of ERU deviate from the value of 3 (Sandoval-Soto
et al., 2005) when processes other than photosynthesis dominate
trace gas exchange over an ecosystem (Seibt et al., 2010). In these
cases, it is assumed that a missing source or sink of COS or
<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> exchange is present in the system.  At continental
scales, anthropogenic sources must be taken into account (Campbell
et al., 2015). In many natural ecosystems, COS exchange by soils
contributes to variations in ERU.</p>
      <p>Soils in terrestrial biomes usually exhibit low COS exchanges
compared to uptake by plants (see review in Whelan et al., 2013).
Uncoordinated, individual studies have been undertaken that
incidentally quantified soil COS exchange in a limited number of
biomes, often with few soil-focused measurements.</p>
      <p>The characterization of soil COS exchange should improve the use of
COS observations as a GPP proxy. Here, to better understand soil
COS exchange, we collected soil samples from multiple biomes and
assessed their COS fluxes in a controlled setting using dynamic
incubation chambers. We further develop a framework for
interpreting and anticipating soil COS fluxes based on empirical
data and gas exchange theory. This model can inform the design of
much needed future field experiments.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Site descriptions for soils used in this study and soils from the
site used in
Billesbach
et al. (2014) and Maseyk et al. (2014). Site descriptions for the FLUXNET
sites can be found in Meyers and Hollinger (2004),
Anderson and Goulden (2011), and
Cook et al.
(2004). The temperature and soil moisture ranges are the maximum and minimum
of 10 years' worth of hourly data from the Climate Forecast System
Reanalysis (CFSRv2; Saha et al.,
2010).</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.92}[.92]?><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="156.490157pt"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Site</oasis:entry>  
         <oasis:entry colname="col2">Description</oasis:entry>  
         <oasis:entry colname="col3">Bulk</oasis:entry>  
         <oasis:entry colname="col4">pH</oasis:entry>  
         <oasis:entry colname="col5">Site temperature</oasis:entry>  
         <oasis:entry colname="col6">Soil moisture</oasis:entry>  
         <oasis:entry colname="col7">Sand</oasis:entry>  
         <oasis:entry colname="col8">Silt</oasis:entry>  
         <oasis:entry colname="col9">Clay</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">density</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">range at 5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">cm</mml:mi></mml:math></inline-formula> (C)</oasis:entry>  
         <oasis:entry colname="col6">range (%VWC)</oasis:entry>  
         <oasis:entry colname="col7">(%)</oasis:entry>  
         <oasis:entry colname="col8">(%)</oasis:entry>  
         <oasis:entry colname="col9">(%)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Stunt Ranch Reserve <?xmltex \hack{\hfill\break}?>(34.0939<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 118.6567<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">W</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col2">Oak savannah</oasis:entry>  
         <oasis:entry colname="col3">1.11</oasis:entry>  
         <oasis:entry colname="col4">7.0</oasis:entry>  
         <oasis:entry colname="col5">4.2–37</oasis:entry>  
         <oasis:entry colname="col6">13–45</oasis:entry>  
         <oasis:entry colname="col7">47</oasis:entry>  
         <oasis:entry colname="col8">31</oasis:entry>  
         <oasis:entry colname="col9">22</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Boyd Deep Canyon, US-SCd <?xmltex \hack{\hfill\break}?>(33.6481<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 116.3767<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">W</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col2">Colorado desert</oasis:entry>  
         <oasis:entry colname="col3">1.46</oasis:entry>  
         <oasis:entry colname="col4">7.5</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.23–44</oasis:entry>  
         <oasis:entry colname="col6">12–38</oasis:entry>  
         <oasis:entry colname="col7">86</oasis:entry>  
         <oasis:entry colname="col8">7</oasis:entry>  
         <oasis:entry colname="col9">7</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Willow Creek FLUXNET, US-WCr<?xmltex \hack{\hfill\break}?>(45.8060<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 90.0798<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">W</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col2">Deciduous forest</oasis:entry>  
         <oasis:entry colname="col3">0.84</oasis:entry>  
         <oasis:entry colname="col4">5.8</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>22–29</oasis:entry>  
         <oasis:entry colname="col6">9.5–42</oasis:entry>  
         <oasis:entry colname="col7">62</oasis:entry>  
         <oasis:entry colname="col8">30</oasis:entry>  
         <oasis:entry colname="col9">8</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Los Amigos Biological Station, Peru <?xmltex \hack{\hfill\break}?>(12.5692<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, 70.1001<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">W</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col2">Rainforest</oasis:entry>  
         <oasis:entry colname="col3">0.92</oasis:entry>  
         <oasis:entry colname="col4">3.9</oasis:entry>  
         <oasis:entry colname="col5">14–31</oasis:entry>  
         <oasis:entry colname="col6">15–47</oasis:entry>  
         <oasis:entry colname="col7">63</oasis:entry>  
         <oasis:entry colname="col8">21</oasis:entry>  
         <oasis:entry colname="col9">16</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Bondville FLUXNET, US-Bo1 <?xmltex \hack{\hfill\break}?>(40.0062<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 88.2904<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">W</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col2">Soybean/corn</oasis:entry>  
         <oasis:entry colname="col3">1.09</oasis:entry>  
         <oasis:entry colname="col4">6.1</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14–33</oasis:entry>  
         <oasis:entry colname="col6">12–46</oasis:entry>  
         <oasis:entry colname="col7">20</oasis:entry>  
         <oasis:entry colname="col8">55</oasis:entry>  
         <oasis:entry colname="col9">25</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Southern Great Plains ARM site, <?xmltex \hack{\hfill\break}?>site of previous studies <?xmltex \hack{\hfill\break}?>(36.6050<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 97.4850<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">W</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col2">Wheat field</oasis:entry>  
         <oasis:entry colname="col3">1.14</oasis:entry>  
         <oasis:entry colname="col4">4.2</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>7.8–40</oasis:entry>  
         <oasis:entry colname="col6">12–46</oasis:entry>  
         <oasis:entry colname="col7">15</oasis:entry>  
         <oasis:entry colname="col8">63</oasis:entry>  
         <oasis:entry colname="col9">22</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
      <p>Soil samples were acquired from agricultural, forest, desert, and
savannah sites (Table 1) with a variety of patterns in soil
moisture and temperature (Fig. 1). Except for the Peruvian
rainforest sample, soil collection followed the same
protocol. First, two 0.0225 <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> representative sites were
selected, one adjacent to the biome's predominant vegetation, the
other a meter away. The litter layer was removed and reserved
separately. Soil was then excavated from the top 0.05 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> of
a 0.01 <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> area, double-bagged, and shipped overnight to
the Carnegie Institution for Science in Stanford, CA, for
analysis. The Peruvian rainforest sample was an amalgamation of
soils from the top 0.05 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> of several sites, collected by
auger from the Los Amigos Biological Station in Peru. These soils
were air-dried and then combined before analysis. Bulk density and
soil moisture content for all soils were determined by gravimetric
methods. Soil pH was measured with a Corning Pinnacle 530 pH meter
(Xylem Inc., White Plains, NY). Locations of sites are shown in
Fig. 2.</p>
      <p>Sites were selected to capture variability between biomes and
address data needs. The Bondville site is an agricultural research
station that was rotated between soybean and corn crops; at the
time of sampling, soybeans were planted, but soil contained corn
litter. The Stunt Ranch FLUXNET site, an oak savannah, and the Boyd
Deep Canyon Reserve, to our knowledge the first desert soil
investigated for COS exchange, are both located within and managed
by the University of California Reserve System. The Willow Creek
mature forest, Bondville FLUXNET, and Southern Great Plains ARM
sites are within the footprints of COS air-monitoring sites that
include tall tower and airborne platforms (Montzka et al., 2007).
Soil temperature and soil moisture variability for all sites are
presented in Fig. 1.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p>The normalized concurrence of soil moisture and 5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">cm</mml:mi></mml:math></inline-formula> depth
temperature at sites where soils were collected for this study and the wheat
field where the Maseyk et al. (2014) study was performed, hourly Climate
Forecast System Reanalysis (CFSRv2; Saha et al., 2010) data over 2000 through
2009 from the nearest appropriate data point.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f01.png"/>

      </fig>

      <p>The experimental chambers were solid PFA 1 L jars and threaded solid PFA lids
with two ports (Savillex, Eden Prairie, MN, USA). PTFE tape was used to
achieve an airtight seal on the threads. The outlet port was attached to PFA
tubing extending into the middle of the chamber. Soil subsamples were placed
in individual chambers and weighed. Following Van Diest and
Kesselmeier (2008), 75 to 80 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">g</mml:mi></mml:math></inline-formula> soil samples were used to
reduce the presence of concentration gradients in the soil profile
during dynamic incubation experiments. One soil subsample from the
agricultural site was wet-filtered through a 53 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>
sieve to remove the sand-sized soil fraction before incubation.
Otherwise, soils were not sieved; large pieces of loose litter were
already removed when the soils were initially collected. By keeping
soils whole, we reduced the influence of sample processing
artifacts on our lab-based flux observations at the expense of working
with non-homogenized and therefore less reproducible subsamples.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Locations of soil collection sites. The Southern Great Plains site
is referred to in the discussion as the site used in Billesbach et al. (2014)
and Maseyk et al. (2014), but was not used in these soil incubation
experiments. For site descriptions, see Table 1.</p></caption>
        <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f02.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>The experimental setup for laboratory-based soil incubation
experiments. The Nafion tubing was placed in a container of water and used to
humidify the incoming gas stream. Three-way valves were used to switch between
analyzing a nitrogen stream, the gas stream that flowed through the chamber
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>f</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, orientation of valves illustrated above), and the gas stream
bypassing the chamber (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>).</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f03.png"/>

      </fig>

<sec id="Ch1.S2.SS1">
  <title>Determination of soil COS exchange</title>
      <p>Soil fluxes of COS were determined using a dynamic, flow-through
chamber approach. A commercially available Aerodyne quantum cascade
laser (QCL, Aerodyne Research, Inc., Billerica, MA, US) was used to
quantify COS and <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mixing ratios in the effluent of
a laboratory-based apparatus (Fig. 3). The precision of the instrument was
8 ppt COS at 1 Hz and 2 ppt COS for observations averaged over 50 s, with
an absolute calibration accuracy of 5 % COS (Commane et al., 2013).
Fluxes determined here required quantifying only relative mole ratios. Fluxes
were calculated using
an equation adapted from de Mello and Hines (1994):
<?xmltex \hack{\newpage}?>

                <disp-formula id="Ch1.E2" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi>F</mml:mi><mml:mo>=</mml:mo><mml:mi>V</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi>f</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:msubsup><mml:mi>m</mml:mi><mml:mtext>soil</mml:mtext><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          <inline-formula><mml:math display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> is the COS or <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> exchange rate in <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">gas</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">dry</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">soil</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the mixing ratio of
the compound entering the chamber, determined by analyzing the gas
stream bypassing the chamber headspace.  <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>f</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the
mixing ratio of the compound exiting the 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">L</mml:mi></mml:math></inline-formula> PFA chamber
headspace. <inline-formula><mml:math display="inline"><mml:mi>V</mml:mi></mml:math></inline-formula> represents the sweep rate of the total air through
the chamber, measured by the mass flow meter upstream of the QCL, typically 0.29 to 0.31 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">L</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/></mml:mrow></mml:math></inline-formula>,
and converted to <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. The value <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
is the amount of dry soil enclosed inside the chamber in grams. The
flow of the system was driven by a vacuum pump downstream of the
QCL. The instrument also measured <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> and applied an adjustment for
dilution by water vapor, generally a less than 1 % correction.
According to the NIST spectral database, strong water vapor lines do not
overlap the COS and <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> lines at 2052.256 and 2052.096 <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">cm</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. A more detailed description of the instrument can be found in
Commane et al. (2013), with a further exploration of the instrument
limitations by Kooijmans et al. (2016). Ambient laboratory air was used as
the sweep gas for the incubations performed here. Observation of a dry nitrogen
stream between incubations was used to correct for instrument baseline drift.
While ambient COS mixing ratios had small variation (510 ppt with 80 ppt
standard deviation), some of the <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes were
uninterpretable because of variations in ambient <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
mixing ratios, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes that could not be
distinguished from 0 are graphically presented at 0.</p>
      <p>Each <inline-formula><mml:math display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> quantification is generated from 80 min of 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Hz</mml:mi></mml:math></inline-formula>
air analysis: 10 min of nitrogen gas, 10 min of bypass air, and 40 min of air
directed through the soil chamber, followed by repeating the analysis of
nitrogen gas and bypass air for 10 min each. To check for baseline
stability, the ambient air and nitrogen gas were both analyzed for 10 min
before and after each chamber measurement. Air flow was directed through the
chamber and the effluent analyzed for 40 min to promote soil equilibration
within a dynamic headspace. COS mole ratios were generated by monitoring the
appropriate absorption lines. The average COS reported over the last several
minutes of chamber flow-through and bypass were corrected for zero drift
using the nitrogen (COS-free) signal, then used as <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>f</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
respectively,
in Eq. (2).  COS fluxes are reported in pmol COS per gram of dry
weight soil per minute (pmol COS <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>); negative
values indicate uptake of COS, when <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi>f</mml:mi></mml:msub><mml:mo>&lt;</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p>The temperature of the chamber was manipulated from 10 to
40 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C with a constant-temperature water bath. For higher-temperature observations of soil fluxes from the soy field soil,
the incubation chamber was placed in a container of water on
a hotplate. The actual soil temperature was recorded by a small,
self-contained temperature data logger with a stainless steel outer
casing (iButtons, Maxim Integrated, San Jose, CA, US). In order to
prevent the soil from drying out during the analysis, a length of
Nafion tubing was placed upstream of the chamber inside a container
of distilled water in the same water bath. Even with this
precaution, soil samples still dried slightly during the
experiment. Samples were weighed daily, and soil moisture content
was altered or maintained by adding distilled water. When water
content was changed, soil samples were held at 20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and
COS flux observations continued for at least 12 h.</p>
      <p>To explore the sensitivity of COS uptake to chamber COS mole fractions, we
performed a series of incubations with a freshly collected soil sample from
near the original soy field site. The soil sample was air-dried to
approximately 2 % VWC then incubated with ambient sweep air and COS-free
zero air, which contained 300 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppm</mml:mi></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and no detectable COS.
The difference between the two treatments helped characterize the effect of
COS concentration on observed COS fluxes.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Scaling laboratory COS measurements to compare to field observations</title>
      <p>Performing soil incubation experiments allowed for precise manipulation of
environmental variables to reveal underlying patterns in soil COS exchange.
Soil in situ has an important dimension not represented by these laboratory
experiments: depth (Ogee et al., 2015; Sun et al., 2015). Data from this
study could represent COS exchange from only the top layer of soil.
Nonetheless, it would be enlightening to compare controlled experiments to
data collected in the field.</p>
      <p>A further experiment was performed to estimate the relationship
between laboratory, per-gram measurements and field, per-area
measurements. Soy field soil was gradually added to
a 20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C incubation chamber, starting with 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">g</mml:mi></mml:math></inline-formula>
and increasing to 300 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">g</mml:mi></mml:math></inline-formula>. While the total COS emissions
increased with every soil addition, the flux per gram soil
increased linearly between 50 and 100 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">g</mml:mi></mml:math></inline-formula>, then demonstrated
saturation behavior with samples greater than 100 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">g</mml:mi></mml:math></inline-formula>. Thus,
all fluxes were scaled up to 100 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">g</mml:mi></mml:math></inline-formula> and assumed to
represent a soil footprint equal to the area of the incubation chamber base, 0.00779 <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>. In short, fluxes were multiplied
by a factor of (100 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">g</mml:mi></mml:math></inline-formula>) (0.00779 <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) (60 s min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> or 214 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">min</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Modeling patterns in COS soil fluxes</title>
      <p>The total net COS flux observed from the soils is thought to be the
combination of abiotic and biotic fluxes.

                <disp-formula id="Ch1.E3" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,biotic</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,abiotic</mml:mtext></mml:msub></mml:mrow></mml:math></disp-formula>

          <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the net flux of COS, whereas
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,biotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,abiotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> represent the
contribution of biotic and abiotic processes, respectively. The
flux units used here were transformed as described in Sect. 2.2
from <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">COS</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">g</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">dry</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">soil</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">COS</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Two models were fitted to soy field COS
soil flux observations to explain <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,biotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,abiotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> separately. First, air-dried soil
COS measurements were described using an exponential equation, as
in Maseyk et al. (2014).

                <disp-formula id="Ch1.E4" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,abiotic</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mi>exp⁡</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">β</mml:mi><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was the temperature of the soil in
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> were parameters determined
using the least-squares fitting approach. These driest measurements
were assumed to represent the observable fluxes with the least
influence from microbial uptake of COS while keeping the soil in
tact. This calculation was used to examine potential effects of soil COS
production during changes in soil moisture. To disentangle biotic fluxes, the
soy field <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,abiotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was then
subtracted from <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> observations over a range of temperatures
to yield <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,biotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, as in Eq. (3).</p>
      <p>To explain <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,biotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, we used a model that was
originally developed for soil NO production in Behrendt et al.
(2014). Previous work (Van Diest and Kesselmeier, 2008) had used
a similar NO soil flux model. The overall form of the equation is
the product of a power function and an exponential function,
Eqs. (5) and (6).

                <disp-formula specific-use="align" content-type="numbered"><mml:math display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E5"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:mi>a</mml:mi><mml:mo>=</mml:mo><mml:mi>ln⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:msup><mml:mfenced open="(" close=")"><mml:mi>ln⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>+</mml:mo><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced></mml:mfenced><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E6"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,biotic</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>F</mml:mi><mml:mtext>opt</mml:mtext></mml:msub><mml:msup><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mi>a</mml:mi></mml:msup><mml:mi>exp⁡</mml:mi><mml:mfenced close=")" open="("><mml:mo>-</mml:mo><mml:mi>a</mml:mi><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mfenced></mml:mfenced></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            Here <inline-formula><mml:math display="inline"><mml:mi>a</mml:mi></mml:math></inline-formula> is the curve shape constant, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are the COS fluxes (pmol COS <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>)
at soil moistures <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (percent
volumetric water content, % VWC), <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the
maximum biotic COS uptake, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>opt</mml:mtext></mml:msub><mml:mo>&gt;</mml:mo><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,biotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the COS uptake for a given soil
moisture <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> after subtracting <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,abiotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
within the specified temperature range. The two models for
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,biotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,abiotic</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> could then be
used to predict soil COS fluxes for a given temperature and soil
moisture condition.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Assessing the importance of soil COS fluxes to the GPP proxy</title>
      <p>Ecosystem COS flux, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,ecosystem</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, is the sum of leaf
COS uptake, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and soil COS exchange
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, including litter. Two approaches were used to explore the
error introduced by calculating GPP from ecosystem COS exchange
without correcting for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <p>The first method sought to calculate temporal variability in the
relative importance of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. We used GPP estimates
for the soy field FLUXNET site (US-Bo1) based on half-hourly
<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> eddy flux covariance measurements and a respiration
model (Reichstein et al., 2005), restricted to values greater than
25 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">mol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> to include only midday fluxes when photosynthesis was high.  <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
was anticipated from these reported GPP values, using Eq. (1) with
relative uptake of 1.8 (Stimler et al., 2011) and an ambient
mixing ratio of <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> at 380 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppm</mml:mi></mml:math></inline-formula> and of COS at
500 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppt</mml:mi></mml:math></inline-formula>. The model described in Sect. 2.3 was used to
generate <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> estimates from field soil moisture and
temperature data collected at the site.  Estimates of
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> were then added
together and used to calculate new GPP estimates with Eq. (1). The
difference between the reported GPP estimates and estimates using
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,ecosystem</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> instead of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in Eq. (1)
was then evaluated.</p>
      <p>Secondly, we examined the spatial importance of reported
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from the few values reported in the
literature, relying on a similar concept as the global calculation
above. Using the biome GPP estimates from Beer et al. (2010), we
back calculated anticipated estimates of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
using Eq. (1). For this purposefully simple calculation, we
assume a 100-day growing season with 12 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula> of light per day
to convert between annual estimates of GPP and field measurements
calculated in s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> units, though this obviously does not
represent the diversity of biome carbon assimilation patterns. For
each biome where data existed, a range of
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,ecosystem</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was calculated as the estimated
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> added to the range of reported
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from previous studies. A GPP estimate was
then made using Eq. (1) with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,ecosystem</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in place
of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. The percentage difference between the GPP
estimate in Beer et al. (2010) and this new GPP estimate was then
evaluated.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p>Net COS exchange over temperature from a soil sample taken near the
original soy field site: fluxes observed under ambient sweep air and COS-free
sweep air conditions with exponential least-squares regression lines
<bold>(a)</bold>, and the relationship between ambient chamber COS concentrations and
observed fluxes with linear least-squares regression lines <bold>(b)</bold>.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f04.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
      <p>With the exception of the soy field sample, soils investigated
here exhibited net COS exchange rates much lower than anticipated leaf COS uptake, ranging
from <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8 to <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>8 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">COS</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, compared
to leaf uptake rates of <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>27 to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>42 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">COS</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>
(Stimler et al., 2011). The sensitivity of COS soil exchange to COS ambient
concentrations is presented in Sect. 3.1. The overall patterns
of COS exchange over temperature and soil moisture gradients are
described in Sects. 3.2 and 3.3. The soil samples from the soy field had
the highest overall fluxes: the biotic and abiotic components of
these fluxes are investigated in Sect. 3.4.</p>
<sec id="Ch1.S3.SS1">
  <title>COS mixing ratios and COS net fluxes</title>
      <p>Altering the mixing ratio of COS in the chamber sweep air had a strong effect
on COS exchange with a soy field soil sample. The slopes of the linear
regression lines in Fig. 4b represent the change in COS flux of the soil
sample divided by the change in ambient COS. The slopes are all negative and
become strictly steeper as temperature increases. Under ambient and zero air
treatments, the soil sample showed exponentially higher net COS emissions
with temperature. Apparent uptake increased with more available COS in the
headspace. The linear regression intercepts in Fig. 4b and graphed separately
in Fig. 5b represent the theoretical flux we would expect if there were no
COS in the chamber at all. This soil sample exhibited net emissions of COS at
all temperatures; therefore, the headspace always contained some small amount.</p>
      <p>The COS mixing ratios observed in laboratory air during the entire course of
experiments was <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>510</mml:mn><mml:mo>±</mml:mo><mml:mn>80</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppt</mml:mi></mml:math></inline-formula>. The mixing ratio observed at the
outlet was <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>470</mml:mn><mml:mo>±</mml:mo><mml:mn>95</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppt</mml:mi></mml:math></inline-formula> COS. To calculate the maximum anticipated
effect of this range, we used the maximum slope observed for the linear
relationship described in Kesselmeier et al. (1999) for soils at 17 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C at a
specific volumetric water content: <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,uptake</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> = 0.006 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> [COS]
<inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> 0.32, where soil COS uptake, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,uptake</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, is reported in
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">COS</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">h</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and [COS] is the mixing ratio of COS in
<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppt</mml:mi></mml:math></inline-formula>. The variability of COS mixing ratios in the soil chamber
calculated by this method would cause a variability of <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.019 pmol gram dry
soil<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. By our simplified scaling presented in Sect. 2.2, this
translates to 4.1 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">COS</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Slopes <bold>(a)</bold> and intercepts <bold>(b)</bold> of the linear least-squares regression lines in Fig. 4b and their exponential linear
least-squares regression relationship with incubation temperature (dotted lines).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f05.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p><inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and COS flux observations over a range of temperatures
and soil water content. See soil sample descriptions in Table 1.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f06.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS2">
  <title>COS soil flux observations with temperature</title>
      <p>Overall, desert and rainforest samples had the smallest magnitude
net COS exchange rates. The temperate forest samples showed the
largest net uptake during the first trials, when the soil sample
was at field soil moisture, 41 % VWC. Of the small fluxes
presented in Fig. 6, temperate forest soils also had the largest
net production when the soil sample was in its hottest and driest
state (Fig. 6b, 38 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C and 5 % VWC). Samples from the
oak savannah displayed variable fluxes (Fig. 6c). Observations with
the soy field soil generated mostly net production of COS, often 10
times greater than fluxes from other soil samples (Fig. 7).</p>
      <p>COS fluxes tended towards more positive fluxes with hotter temperatures (Figs. 6
and 7).  Soils incubated at 40 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C exhibited net COS
production while incubations at 10 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C yielded net COS
consumption in a majority of cases. Except for the desert site, the
areas where these soils were collected rarely experienced such high
maximum soil temperatures, if at all (Fig. 1).</p>
      <p>The temperate forest showed the highest <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes, with
increasing fluxes for increasing temperatures and soil moisture
(Fig. 6e), contrasted by the small fluxes from the rainforest and
desert soils (Fig. 6d). The savannah soils exhibited an optimum
temperature for <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes near approximately
30 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (Fig. 6f).</p>
      <p>The soybean agricultural soil incubations yielded net COS emissions
for the majority of trials, with a larger range than the other
soils investigated: <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.04 to
0.09 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">COS</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">g</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">min</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> when incubated between 10
and 40 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. When samples of the agricultural soil were
heated further, COS net production persisted. To determine the
contribution of soil organic matter in the sand-sized fraction
(SSF), coarse litter <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>53</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> was removed from one
subsample and incubated as before. COS net emissions were higher
compared to non-sieved samples at similar temperature and water
content (Fig. 7).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p>COS net exchange from a soy field soil. For one series of
observations, the sand-sized fraction (represented by stars) was removed
from a sample by wet sieving, then incubated as before.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f07.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S3.SS3">
  <title>COS soil flux observations with soil moisture</title>
      <p>Soil COS fluxes had a more complicated relationship with soil
moisture. When soil samples were waterlogged, net COS exchange
shifted towards zero compared to drier trials. For the most part,
drier soils have net emissions of COS, except in the case of the
varied fluxes from the oak savannah soil (Figs. 6 and 7). In oak
savannah soil, increases in soil moisture led to increases in COS
uptake. When soil moisture was increased further to near
40 % VWC, COS exchange returned to near zero. The savannah
site was expected to experience this range of soil moisture
(Fig. 1). In contrast, where dry rainforest soil experienced an
increase in net COS production, rainforest soil rarely experiences
near-zero soil moisture (Fig. 1). Increasing water content to field
levels, the rainforest soil COS exchange returned to near
zero. This does not take into account the fluctuations in soil
moisture and redox potential experienced in a rainforest
in situ. Temperate forest soils appear to experience net COS uptake
except under very dry or unusually hot conditions (Fig. 6b).</p>
      <p>To observe changes in COS fluxes during changes in soil moisture
(i.e., as would happen in situ via precipitation), COS exchange was
recorded for at least 12 h after soil moisture was changed during
the course of the experiment (Fig. 8). The rainforest and savannah
fluxes showed no discernible pattern in fluxes after water
additions. For one series of observations with rainforest soil, the
Nafion tubing was removed and the soil dried slowly over time,
continuing to show little variability. In contrast, the temperate
forest and soy field soils (Fig. 8a) responded with a large
variability in COS fluxes after soil moisture manipulation, taking
several hours to reach a consistent flux value. There was an
overall negative relationship between soil moisture and net COS
production for the soy field soil samples, but the link between
soil moisture and COS fluxes for soils collected at other sites is
not as clear.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p>COS flux observations at 20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C after soil water content
manipulation for soy field and temperate forest soils <bold>(a)</bold> and rainforest and savannah soils <bold>(b)</bold>. A rainforest soil sample in <bold>(b)</bold> was intentionally dried out by
removing the Nafion tubing in the experimental setup (see Fig. 3).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f08.png"/>

        </fig>

      <p><?xmltex \hack{\newpage}?>To test whether the COS mixing ratio controls the variation seen in Fig. 8,
we examined the mixing ratio of COS exiting the chamber versus COS exchange
(Fig. 9), and we find that no clear relationship emerges. Additionally, high COS
production does not appear to obscure the relationship between COS ambient
mixing ratios and COS uptake. As a thought exercise to demonstrate this, we
estimated the COS production component of soil fluxes and subtracted it from
the net fluxes depicted in Fig. 9, shown in Fig. 10. When soils were
air-dried then incubated, a net COS emission was observed with a positive
relationship to temperature ranging from 10 to 40 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C for all the samples
except the desert soil. Using Eq. (4) and least-squares regression, a curve was
generated for all soil types investigated other than the desert soils, shown
in Fig. 11 and Table 2. We did not generate enough data to characterize the
relationship in savannah soils. Correcting for COS production in this way
does not change the overall relationship between incubation COS mole fraction
and observed COS fluxes. The production of COS is assumed to be insensible to
the concentration of COS the soil experiences, depending here only on
temperature. From examination of Fig. 11, it can be seen that the correction for abiotic production at 20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C is a small portion of the overall magnitude of the fluxes. Using this
purposefully simple model (Eq. 3) to subtract out the effects of COS
production vertically shifts the data and does not change the pattern of the
relationship, as shown in Fig. 10.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p>The mixing ratio of COS exiting the incubation chamber versus COS
fluxes after water addition at 20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f09.png"/>

        </fig>

      <p>COS fluxes change over time after a change in soil water
content was not consistent for given changes in soil
moisture. However, when water was added to dry soil (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:math></inline-formula> % VWC), many soil subsamples exhibited the pattern in
Fig. 12b: <inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes remained consistent, while COS fluxes
increased immediately after water addition, then slowly decreased
over many hours. This is contrasted by Fig. 12a, where both COS and
<inline-formula><mml:math display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">CO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fluxes demonstrate some variability after changes in
water content.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <title>Modeling soil COS production and consumption</title>
      <p>Net COS fluxes were a balance of abiotic and biotic processes. If
we assume that incubations of air-dried agricultural soils were representative
of an abiotic COS production or desorption (less some physical
limitations), we can calculate the relationship between abiotic
COS production and temperature for agricultural soil (plotted in
Fig. 13a). We fitted Eq. (4) to the data scaled as described in Sect. 2.2 and using a least-squares
approach, much like in Maseyk et al. (2014).
The resulting Eq. (7) had an <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> value of 0.9.

                <disp-formula id="Ch1.E7" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,abiotic</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn>0.437</mml:mn><mml:mi>exp⁡</mml:mi><mml:mo>(</mml:mo><mml:mn>0.0984</mml:mn><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></disp-formula>

          There were more cold (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn>15</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) incubations performed than
hot (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>35</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) incubations, and some of the coldest
incubations were excluded from the fit to give appropriate weight to
the hottest incubations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10"><caption><p>Soil COS mole fractions and soil COS flux after water addition at
20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C with subtraction of anticipated COS production shown in Fig. 11.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f10.png"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p>Fitting parameters for air-dried soils versus temperature, found by least-squares regression curve fitting to Eq. (4).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Soil origin</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mrow><mml:mi>exp⁡</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">soy field</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>6.12</oasis:entry>  
         <oasis:entry colname="col3">0.096</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">temperate forest</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>7.77</oasis:entry>  
         <oasis:entry colname="col3">0.119</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">savannah</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>9.54</oasis:entry>  
         <oasis:entry colname="col3">0.108</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">rainforest</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8.2</oasis:entry>  
         <oasis:entry colname="col3">0.101</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>Subtracting the dry soy field soil signal component from all other COS
incubation results, we found the biotic and physically limited flux
component (Fig. 13b). The COS incubation observations had been converted
to <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> units, binned by incubation
temperatures as <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn>20</mml:mn></mml:mrow></mml:math></inline-formula>, 20–30, and <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>30</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, fitted to
Eq. (6) and plotted in Fig. 13b.  The resulting parameters are shown
in Table 3. For the purposes of generalizing the equation to any
temperature and moisture content pairing, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was held
constant at 35 % VWC; thereafter the data were binned by different
temperature increments to discern how <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in Eqs. (5) and (6)
change with temperature. More data need to be collected to create
a robust model; however, we think this is a worthwhile attempt at
capturing variability.

                <disp-formula specific-use="align" content-type="numbered"><mml:math display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E8"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>opt</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn>0.00986</mml:mn><mml:msubsup><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>+</mml:mo><mml:mn>0.197</mml:mn><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:mo>-</mml:mo><mml:mn>9.32</mml:mn></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E9"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>opt</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn>0.287</mml:mn><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:mn>14.5</mml:mn></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E10"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn>0.0119</mml:mn><mml:msubsup><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>+</mml:mo><mml:mn>0.110</mml:mn><mml:msub><mml:mi>T</mml:mi><mml:mtext>soil</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:mo>-</mml:mo><mml:mn>1.18</mml:mn></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            The total flux <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> can be calculated as the sum
of fluxes generated by biotic and abiotic processes.</p>
      <p>Using this framework of equations, we estimate the influence of
large soil COS fluxes on GPP estimates. We used data reported for
the Bondville FLUXNET site, US-Bo1, the soy field site in this study. The model shown in Fig. 13 and
described in Eqs. (3)–(10) was based on flux observations from
soil collected at this site. There are well-known uncertainties
associated with reported GPP from flux towers (Desai et al.,
2008). However, since we have no in situ measurements of COS from
the site, these data are used as a starting point for calculating
theoretical error potentials.</p>
      <p>Two GPP estimates are presented in Fig. 14a: the first represents
GPP estimates with COS leaf uptake fluxes alone, the second was
based on theoretical net COS fluxes, including both leaf and soil
COS exchange calculated with Eq. (3). The difference between the
1-day moving averages (Fig. 14b) signifies how GPP could have been
over- or underestimated if net ecosystem COS fluxes were used as
leaf uptake fluxes, ranging from <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5 to <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>25 %.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11"><caption><p>Observations of COS fluxes from air-dried soils over a range of
temperatures. Air-dried soils experience negligible COS uptake; the net
fluxes here are assumed to be soil COS production only. Equation (4) was used to
curve-fit the relationship between temperature and soil COS production with
least-squares regression. The <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> values of this attempt are shown in
the figure legend.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f11.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12"><caption><p>COS fluxes over time after temperate soil moisture content was
changed from <bold>(a)</bold> 10 to 22 % VWC and <bold>(b)</bold> 2 % (air-dried) to
10 % VWC, incubated at 20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f12.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13"><caption><p>Estimated fluxes from abiotic <bold>(a)</bold> and biotic <bold>(b)</bold> processes of soil COS
exchange from soy field soil. In <bold>(a)</bold>, COS fluxes from the driest
trials (VWC <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:math></inline-formula> %) were related to temperature by Eq. (4). The
empirically derived relationship for soils with soil moisture content less
than 20 % VWC from Maseyk et al. (2014) is plotted for comparison. In
<bold>(b)</bold>, COS fluxes from soy field soil were transformed by subtracting
the anticipated driest flux using Eq. (3). A model of COS consumption,
Eqs. (5) and (6), was applied to the resulting data, binned
into groups of incubations <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&lt;</mml:mo><mml:mn>21</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (indigo), <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>30</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C
(yellow), and the range in between (orange). The parameters of the least-squares fit for each temperature bin can be found in Table 3.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f13.png"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3"><caption><p>Fitting parameters using Eq. (6) for soy field COS fluxes binned by
temperature. See Sect. 4.2 for parameter descriptions. Fluxes are in pmol
COS <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and soil moistures are in percentage volumetric
water content (% VWC).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Temperature bin (<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C)</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mtext>opt</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mrow><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">θ</mml:mi><mml:mi>g</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>r</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">10–20</oasis:entry>  
         <oasis:entry colname="col2">8.38</oasis:entry>  
         <oasis:entry colname="col3">18.7</oasis:entry>  
         <oasis:entry colname="col4">1.40</oasis:entry>  
         <oasis:entry colname="col5">37.2</oasis:entry>  
         <oasis:entry colname="col6">0.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">21–30</oasis:entry>  
         <oasis:entry colname="col2">11.6</oasis:entry>  
         <oasis:entry colname="col3">21.9</oasis:entry>  
         <oasis:entry colname="col4">9.99</oasis:entry>  
         <oasis:entry colname="col5">28.6</oasis:entry>  
         <oasis:entry colname="col6">0.8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">31–40</oasis:entry>  
         <oasis:entry colname="col2">14.8</oasis:entry>  
         <oasis:entry colname="col3">25.8</oasis:entry>  
         <oasis:entry colname="col4">8.48</oasis:entry>  
         <oasis:entry colname="col5">47.6</oasis:entry>  
         <oasis:entry colname="col6">0.6</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>To explore the possible spatial variation in soil COS exchange
influence on the GPP proxy, we perform a similar calculation
(described in Sect. 2.4) using in situ soil fluxes from previous
studies (Table 4). The potential error in GPP estimates based on
these sparse measurements ranges from <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>220 to <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>119 %. More
observations and modeling of soil COS exchange for different
ecosystems could ameliorate this large error.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
      <p>Generally, non-wetland soils are thought to have a small COS
exchange rate compared to uptake by plant leaves. This assumption
is based on few chamber measurements, often by severely altering
the ecosystem, e.g., extracting plants beforehand (see review in
Whelan et al., 2013).  During a campaign to measure COS by eddy
flux covariance in Oklahoma, Billesbach et al. (2014) noticed that
hot soil and particularly hot and dry soil yielded emissions of
COS to the atmosphere. This is believed to be a breakdown product
from thermal decomposition of soil organic matter (Maseyk et al.,
2014; Whelan and Rhew, 2015). This study sought to investigate the
ubiquity of this phenomenon by incubating soils from a broad range
of ecosystems and under a matrix of controlled conditions. Here we
have found that, as assumed previously, most soils have small COS
fluxes relative to anticipated plant uptake. However, large
emissions like those reported by Billesbach et al. (2014) were
generated in incubations of another agricultural soil from a soy
field over 800 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> away (Fig. 2).</p><?xmltex \hack{\newpage}?>
<sec id="Ch1.S4.SS1">
  <title>Potential effects of ambient COS concentration on COS exchange</title>
      <p>Previous studies have shown that the interaction between net fluxes and ambient
concentration of COS is linear (e.g., Conrad, 1994; Kesselmeier et al., 1999).
COS soil fluxes have a demonstrated “compensation point”, the atmospheric
concentration of COS where the net flux of a specific system is 0. At
concentrations below the compensation point, net emission to the atmosphere
is observed; net consumption is observed when ambient concentrations are
higher than the compensation point. We believe that the variability in fluxes
due to changes in soil moisture in Fig. 8 masks the effect of changes in COS
chamber mixing ratios. In Kesselmeier et al. (1999), the authors used the
mole fraction of COS exiting the incubation chamber as a measure of the
well-mixed ambient environment actually experienced by the soil. The
relationship between the observed COS fluxes after soil moisture change and
the COS mixing ratio exiting the chamber is depicted in Fig. 9; all
incubations depicted took place at 20 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. If the controlling variable of the
net fluxes in Fig. 9 was ambient COS, one would expect a strong inverse
linear relationship where higher concentrations of COS result in higher
uptake of COS at a particular soil moisture state. Instead, we see a positive
relationship between COS mole fraction and COS flux. This is not surprising,
because higher soil COS production leads to more COS leaving the chamber.
Perhaps there is a dampening effect on COS fluxes, where net COS production
by soils increases soil COS consumption, but the overall effect is
overwhelmed by high COS production. In other words, the net production
reported here may be in reality higher at the lower ambient COS mixing ratios
that would be encountered by unenclosed soils in the field. However, when COS
production was estimated and taken into account (Fig. 10), the overall
pattern was unchanged.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4" specific-use="star"><caption><p>The error introduced to GPP estimates when COS soil fluxes are held
negligible. The % uncertainty column describes how much GPP would be overestimated, as
a percentage of GPP calculated by Beer et al. (2010), if soil COS uptake
determined from chamber measurements was included in the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> term. Negative values
indicate underestimated GPP. Numbers reported for soil COS exchange were
often based on a small number of observations, sometimes after forced
removal of plants.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.79}[.79]?><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="85.358268pt"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="justify" colwidth="170.716535pt"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Biome</oasis:entry>  
         <oasis:entry colname="col2">GPP estimated</oasis:entry>  
         <oasis:entry colname="col3">Biome area</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from</oasis:entry>  
         <oasis:entry colname="col5">Anticipated</oasis:entry>  
         <oasis:entry colname="col6">% uncertainty in</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,soil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> field studies</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">by Beer et al. (2010)</oasis:entry>  
         <oasis:entry colname="col3">in 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">9</mml:mn></mml:msup></mml:math></inline-formula> ha</oasis:entry>  
         <oasis:entry colname="col4">field studies  in</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>COS,leaf</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6">GPP by neglecting</oasis:entry>  
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">in Pg C yr<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">in <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6">soil COS</oasis:entry>  
         <oasis:entry colname="col7"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Croplands</oasis:entry>  
         <oasis:entry colname="col2">14.8</oasis:entry>  
         <oasis:entry colname="col3">1.35</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>18 to 40</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>48</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>37</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>83</oasis:entry>  
         <oasis:entry colname="col7">Post-harvest soil exchange estimate from the wheat field from Billesbach et al. (2014).</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Temperate grasslands,<?xmltex \hack{\hfill\break}?>shrublands</oasis:entry>  
         <oasis:entry colname="col2">8.5</oasis:entry>  
         <oasis:entry colname="col3">1.78</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>13.3 to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8.8</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>21</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>119</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>34</oasis:entry>  
         <oasis:entry colname="col7">Range reported in Kuhn et al. (1999) as an upper limit.</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Temperate forests</oasis:entry>  
         <oasis:entry colname="col2">9.9</oasis:entry>  
         <oasis:entry colname="col3">1.04</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8 to 1.45</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>42</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn>20</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3</oasis:entry>  
         <oasis:entry colname="col7">Range from Castro and Galloway (1991), Steinbacher et al. (2004), White et al. (2010), and Yi et al. (2007).</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Boreal forests</oasis:entry>  
         <oasis:entry colname="col2">8.3</oasis:entry>  
         <oasis:entry colname="col3">1.37</oasis:entry>  
         <oasis:entry colname="col4">1.2 to 3.8</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>27</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>5 to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14</oasis:entry>  
         <oasis:entry colname="col7">The average and 1 standard deviation from plots having less than 10 % vegetation cover (Simmons, 1999)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Tundra</oasis:entry>  
         <oasis:entry colname="col2">1.6</oasis:entry>  
         <oasis:entry colname="col3">0.56</oasis:entry>  
         <oasis:entry colname="col4">5.27 to 27.6</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>13</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>42 to <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>220</oasis:entry>  
         <oasis:entry colname="col7">The lower production is from De Mello and Hines (1994). The larger production value is an average estimate from Fried et al. (1993)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Deserts</oasis:entry>  
         <oasis:entry colname="col2">6.4</oasis:entry>  
         <oasis:entry colname="col3">2.77</oasis:entry>  
         <oasis:entry colname="col4">No data</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>6</oasis:entry>  
         <oasis:entry colname="col6">No data</oasis:entry>  
         <oasis:entry colname="col7">No data</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Tropical savannahs,<?xmltex \hack{\hfill\break}?>grasslands</oasis:entry>  
         <oasis:entry colname="col2">31.3</oasis:entry>  
         <oasis:entry colname="col3">2.76</oasis:entry>  
         <oasis:entry colname="col4">No data</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>32</oasis:entry>  
         <oasis:entry colname="col6">No data</oasis:entry>  
         <oasis:entry colname="col7">No data</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Tropical forest</oasis:entry>  
         <oasis:entry colname="col2">40.8</oasis:entry>  
         <oasis:entry colname="col3">1.75</oasis:entry>  
         <oasis:entry colname="col4">No data</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>102</oasis:entry>  
         <oasis:entry colname="col6">No data</oasis:entry>  
         <oasis:entry colname="col7">No data</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14"><caption><p>Comparing theoretical GPP estimates based on gross COS leaf fluxes
vs. net ecosystem COS fluxes. <bold>(a)</bold> Theoretical GPP estimates based on
leaf COS uptake, GPP estimates based on net ecosystem COS fluxes calculated
by Eqs. (1) and (3), and their moving averages for a 24 h window. The yellow
shaded region highlights the difference between the reported GPP and the COS-GPP proxy when no soil correction is made. <bold>(b)</bold> The percentage
difference between the 1-day moving average of reported GPP and the
calculated COS flux-GPP estimates with modeled soil COS exchange included.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f14.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15"><caption><p>Comparing the model developed here with field observations.
<bold>(a)</bold> Soil chamber COS flux observations and the empirically derived
relationship between COS fluxes, soil moisture, and surface temperature from
Maseyk et al. (2014) and this study (Eq. 3) – the model developed by
Kesselmeier et al. (1999) as described in Kettle et al. (2002) adjusted for
10 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> as a maximum magnitude uptake.  COS soil fluxes were measured using an automatic soil chamber containing no wheat. <bold>(b)</bold>
Environmental variables observed at the Southern Great Plains ARM site in
Oklahoma from Maseyk et al. (2014).</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3711/2016/acp-16-3711-2016-f15.png"/>

        </fig>

      <p>The soil samples in this study were incubated under flowing air. The soil and
headspace air were assumed to be in equilibrium after 30 min. If that
were true, adsorption and desorption should no longer contribute to the soil
flux: equal amounts of COS should adsorb and desorb. The uptake difference
between the zero air and ambient air treatments in Fig. 4 indicates that some
uptake process was affecting net soil fluxes, even in a very dry soil.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Mechanisms of soil COS exchange</title>
      <p>Multiple mechanisms determined the net COS exchange from soil,
which were affected by soil water content and temperature. There
are three proposed abiotic processes: COS production from abiotic
degradation of soil organic matter (Whelan and Rhew, 2015), the
physical limitations of water restricting air exchange between soil
pore spaces and the chamber headspace (Van Diest and Kesselmeier,
2008), and adsorption/desorption of COS onto soil grains. The
biotic uptake of COS by soils is theorized to be via enzymes
present in the microbial community that are similarly responsible
for COS uptake in plants (Kesselmeier et al., 1999;
Protoschill-Krebs et al., 1996). There is no known biotic COS
production mechanism in soils.</p>
      <p>Taking these routes of COS exchange into account, we can explain
qualitatively the fluxes observed here. For example, hot, dry soil
appeared to produce the highest net COS emissions. Dry soil has
a smaller active microbial community (Manzoni et al., 2011), and
biotic uptake would be small. Higher temperatures should yield more
thermal degradation of organic matter, resulting in higher COS
production. In this study, when soy field soils were heated from 40
to 68 <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C, COS net emissions continued, suggesting that the
trace gas production here had no optimum temperature and was most
likely abiotic (Conrad, 1996). Simultaneously, COS within the soil
would exchange with the chamber air without the added tortuosity of
water-filled pore space. The overall result is more COS produced
abiotically, less COS consumed biotically, and the resulting COS
excess diffusing quickly out of the soil. After wet-up, the
temperature response curve shifts towards a COS sink, though it often
retains a similar shape. When soil moisture is increased further,
soil pore spaces are effectively cut off from the chamber
headspace. When waterlogged, the soil exhibits COS fluxes nearer to 0
regardless of temperature. This reasoning evidently holds across
the temperate forest, savannah, and agricultural soil investigated
here.</p>
      <p>The desert soil samples, however, demonstrated near-zero COS
exchange at field moisture and COS uptake when wetted. Since these
soils are frequently hot and dry, it could be that there is not
sufficient remaining organic material to abiotically degrade into
COS, or there are not enough clay or silt surfaces for COS to
adsorb/desorb. The behavior of the desert soil resembles the soil
COS exchange observed in Van Diest and Kesselmeier (2008) and
Kesselmeier et al. (1999), which both investigated exclusively
sandy soils.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <title>More COS generated from agricultural soil</title>
      <p>For the agricultural soils studied here, it appears that some soil
interaction produced much more COS than other soils
investigated. Large COS emissions were also observed from a wheat
field soil in China (Liu et al., 2010) and the previously mentioned
wheat field in Oklahoma (Billesbach et al., 2014; Maseyk et al.,
2014; Whelan and Rhew, 2015), but not from the sandy arable soil in
Germany, Finland, and China (Van Diest and Kesselmeier, 2008), where
only net COS uptake was observed. While Melillo and Steudler (1989)
found increases in forest soil COS production coincident with
nitrogen fertilizer application, the composition of fertilizer used
at the sites discussed above is unknown to us. It is unclear what
is particular about the agricultural soils in the study by Van Diest and
Kesselmeier (2008) that should result in only soil COS net consumption.</p>
      <p>Two hypotheses emerge from the theoretical framework detailed
above. The first is that all soils experience large COS production
from thermal degradation of soil organic matter or desorption from
soil surfaces, but most or all COS generated is usually consumed by
in situ microbial communities. The agricultural soils collected in
Oklahoma and Illinois undergo pesticide/herbicide applications and
irrigation during the course of their management that may limit the
diversity and size of the microbial community (Griffiths and
Philippot, 2013) and the magnitude of the microbial COS sink. This
idea is partially supported by Whelan and Rhew (2015), where
autoclaved agricultural soils only experienced net COS production, though
autoclaved soils are known to emit COS (Kato et al., 2008).</p>
      <p>The second hypothesis suggests that the accessibility of the
agricultural soil organic matter allowed more abiotic COS
production than in forest or savannah soils. This could also be due
to agricultural land management practices, which tend to break down
soil aggregates and destabilize soil organic matter (Sollins
et al., 1996).  Accessibility, rather than litter quality, could
explain why we see a similar COS production from agricultural
fields with different crop cover, i.e., wheat (Billesbach et al.,
2014; Liu et al., 2010) and soy/corn (this study). However, this
still does not explain the biotically driven net COS uptake
patterns found in arable soils by Van Diest and Kesselmeier (2008)
and Kesselmeier et al. (1999), who report COS fluxes that resemble
more the desert soil fluxes investigated here.</p>
      <p>These two hypothesis may both influence COS exchange
simultaneously. When the course litter and sand (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>53</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>) fraction was removed from a soy field soil
sample, COS production increased per gram of incubated sample
(Fig. 7). This implies that the origin of the COS emissions resides
in the silt and clay-associated fraction of organic matter, which
has been shown to consist of plant matter that has undergone some
microbial processing (Six et al., 2001, 2002). The combination of
microbial activities and increased accessibility of organic matter
to degradation may lead to large COS emissions from soils. While
these mechanisms may explain differences between managed and
non-managed soil COS exchange, we still lack a hypothesis for the
difference between the small sinks in European arable soils and the
temperature-driven sources in US and Chinese arable soils.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <title>Comparison to field observations</title>
      <p>The drawdown of COS over North America has been observed from
aircraft vertical profiles, appearing to scale with GPP-based
uptake of COS by plants (Campbell et al., 2008). Data presented
here indicate soil COS emission was maximum during high-temperature incubations, coincident with some surface temperatures
observed during the North American growing season. We generated
a model in Sects. 2.3 and 3.2 to calculate COS fluxes for US
agricultural soils, taking these large emissions into
account. Relating laboratory measurements to in situ observations
has inherent problems, so we present this as a theoretical
exercise investigating the possible magnitudes of soil COS
exchange on broader scales.</p>
      <p>We plotted our equation with one developed by Maseyk et al. (2014)
from fluxes (Fig. 15a) and environmental parameters (Fig. 15b)
recorded in situ at a wheat field in Oklahoma over the course of
that study in 2012. The COS flux model developed by Kesselmeier
et al. (1999) is displayed using the same input variables,
assuming a constant ambient COS mixing ratios of 500 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">ppt</mml:mi></mml:math></inline-formula>
and a standard flux of 75.3 <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="normal">pmol</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>
(Fig. 15b). This last equation can only predict COS soil uptake
and has been used to model soil COS exchange globally (Kettle
et al., 2002).</p>
      <p>Key patterns emerged from examining differences between the
observations and predictions over the course of the campaign in
Maseyk et al. (2014) (Fig. 15), noting first that the model
presented by Kesselmeier et al. (1999) and the model presented
here were not parameterized using soil from this site. The fact
that there are any similarities at all between the model outputs
and observations is encouraging for future modeling efforts. None
of the three models captured the large emissions observed before
day of year (DOY) 130 when wheat was present in the field and
higher soil moisture occurred. None of the models captured the
large swings from COS source to sink found during large
temperature fluctuations between DOY 110 and 115.  After DOY 130,
the wheat senesced and was harvested, resulting in hot and dry
soils. The simple model from Maseyk et al. (2014) reproduced the
COS soil flux variability better under these conditions. The
Kesselmeier et al. (1999) model generated some variability, but
could not predict any soil COS emissions. This study's model
overlapped both the uptake model's variability during wheat
senescence and the high emissions predicted by Maseyk
et al. (2014) after wheat harvest.</p>
      <p>There are several explanations for the discrepancies between
models and flux observations. Both this study and the Kesselmeier
et al. (1999) model were based on idealized laboratory
conditions, not taking into account interactions with soil COS
exchange at different depths. No doubt COS is produced or consumed
in all layers of soil, not just at the surface, but soil
incubations were purposefully designed to avoid these issues.
Additionally, there is variability in both soil moisture and
temperature even over the area of the soil plot: a heterogeneous
soil may experience variations in these parameters on a small
scale (Entin et al., 2000). Also, soil temperature was measured at
5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">cm</mml:mi></mml:math></inline-formula>, generally cooler than the observed surface
temperature for the site (Maseyk et al., 2014). While there was
not enough variability in soil moisture and temperature to perform
a similar treatment as shown in Fig. 13 for field observations,
we believe the hybrid model presented here will lead
to new investigations that close the gap between lab-based COS
observations and COS exchange at larger scales.</p>
</sec>
<sec id="Ch1.S4.SS5">
  <title>Implications for uncertainty in COS-based GPP estimates</title>
      <p>The main motivation of this work was to make progress towards
better estimates of GPP. The drawdown of COS over the continents
appears to be associated with the uptake of carbon dioxide
(Campbell et al., 2008). For some of the biomes explored here, like
deserts, soil COS exchange under field conditions may actually be
negligible compared to plant uptake. On the other hand, recent work
has suggested that soil COS fluxes in agricultural areas might be
large and need to be taken into account (Billesbach et al., 2014;
Maseyk et al., 2014). The model presented in this study anticipates
these agricultural soil COS fluxes using commonly measured
variables. With such a correction, applying the COS-GPP tracer will
be more feasible to constrain GPP estimates on regional scales.</p>
      <p>Taking COS soil fluxes into account when estimating GPP can avoid
over- and underestimations of carbon fluxes presented in Table 4
and Fig. 14.  Observations are still scarce: despite a plea for data
from desert soils by Kettle et al. (2002), we were not able to
find such a study in the literature over 10 years later. Boreal
forest soil COS exchange estimates are represented by a single
study performed at a single site in Sweden over the course of 2
months in 1993 (Simmons, 1999). Modeling efforts suggest large COS
fluxes in the tropics (Berry et al., 2013; Suntharalingam et al.,
2008) and tropical forests and savannahs are associated with
60 % of global terrestrial GPP (Beer et al., 2010). However,
there remains a dearth of observations in tropical latitudes.</p>
      <p><?xmltex \hack{\newpage}?>This magnitude of avoidable error suggests that soil fluxes are not
negligible; however, the uncertainty of GPP at regional to global
scales is much larger. The error introduced by large soil emissions
from cropland soils to COS-GPP estimates can be avoided by
characterization and correction of COS fluxes. This study's
approach deconvolves the production rates seen to dominate the net
COS flux in Maseyk et al. (2014) and the small uptake rates
observed in sandy soils by Van Diest and Kesselmeier (2008).</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Conclusions</title>
      <p>The quantity of data in Table 4 suggests a dire need for more
information about soil COS exchange. Here we presented
a controlled study using soil from multiple ecosystems and
cohesive theory for how to interpret observed soil COS
fluxes. This study confirms that soil from many biomes exhibited
small COS fluxes compared to estimated plant sinks. However, field
studies must be conducted to determine the extent of the larger
magnitude US agricultural soil COS exchange in order to quantify
and correct for soil effects in GPP proxy models. The difference
in COS flux behavior between agricultural soils investigated in the US and
Europe also remains an open question.</p>
      <p>A final complication arises from water stress: changes in soil
moisture can cause the release of pulses of COS to the atmosphere
(Fig. 12) while affecting photosynthesis and associated plant COS
uptake. Additionally, COS exchange during freeze–thaw events will
shed light on conditions that no field or laboratory study has yet
determined. If the COS soil sink is indeed overwhelmingly
microbial, water stresses will play an important role in their
community diversity and function (Schimel et al., 2007), which may
control the balance of COS over ecosystems.</p>
</sec>

      
      </body>
    <back><ack><title>Acknowledgements</title><p>The authors thank J. Kesselmeier, L. Kooijmans, and H. Chen for technical insights and manuscript
feedback;
D. Chadwick, J. Thom, L. Meredith, J. Chalfant,
and W. Sun for sample collection; K. MacFarlane, T. Guilderson,
S. Biraud, and K. Maseyk for sampling advice and data sharing;
M. Zahniser and A. Kornfeld for QCL technical support; and
G. Badgley, K. Caldeira, and R. Commane for data analysis
suggestions. Equipment was purchased through NSF DBI grant
#1 040 106. Funding for the US-WCr AmeriFlux ChEAS cluster core
site was provided by the U.S. Department of Energy's Office of
Science. The CFSR data were developed by NOAA's National Centers for
Environmental Prediction (NCEP). The data for Fig. 1 are from NOAA's
National Operational Model Archive and Distribution System (NOMADS), which is maintained at NOAA's National Climatic Data Center
(NCDC). This study used the CFSRv2 hourly time series data for soil
moisture (soilm1.gdas.*.grb2 files; Soil Moisture Level 1 on T382
Gaussian Grid) and soil temperature (soilt1.gdas.*.grb2 files; Soil
Temperature Level 1 on T382 Gaussian Grid). The data used to
generate Fig. 14 used eddy covariance data acquired by the FLUXNET
community and in particular AmeriFlux (U.S. Department of Energy,
Biological and Environmental Research, Terrestrial Carbon Program
(DE-FG02-04ER63917 and DE-FG02-04ER63911)). We acknowledge the
financial support to the eddy covariance data harmonization provided
by CarboEuropeIP, FAO-GTOS-TCO, iLEAPS, Max Planck Institute for
Biogeochemistry, National Science Foundation, University of Tuscia,
Université Laval, Environment Canada, the US Department of
Energy, the database development and technical support from
Berkeley Water Center, Lawrence Berkeley National Laboratory,
Microsoft Research eScience, Oak Ridge National Laboratory,
University of California – Berkeley, and University of Virginia.
This manuscript is based upon work supported by the National Science
Foundation under grant number 1433257.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: M. von Hobe</p></ack><ref-list>
    <title>References</title>

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  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Carbonyl sulfide exchange in soils for better estimates of ecosystem carbon uptake</article-title-html>
<abstract-html><p class="p">Carbonyl sulfide (COS) measurements are one of the emerging tools to
better quantify gross primary production (GPP), the largest flux in
the global carbon cycle. COS is a gas with a similar structure to
CO<sub>2</sub>; COS uptake is thought to be a proxy for GPP. However,
soils are a potential source or sink of COS. This study presents
a framework for understanding soil–COS interactions. Excluding
wetlands, most of the few observations of isolated soils that have
been made show small uptake of atmospheric COS. Recently, a series
of studies at an agricultural site in the central United States
found soil COS production under hot conditions an order of magnitude
greater than fluxes at other sites. To investigate the extent of
this phenomenon, soils were collected from five new sites and incubated
in a variety of soil moisture and temperature states. We found that
soils from a desert, an oak savannah, a deciduous forest, and
a rainforest exhibited small COS fluxes, behavior resembling
previous studies. However, soil from an agricultural site in
Illinois,  &gt; 800 km away from the initial central US study
site, demonstrated comparably large soil fluxes under similar
conditions. These new data suggest that, for the most part, soil COS
interaction is negligible compared to plant uptake of COS. We
present a model that anticipates the large agricultural soil fluxes
so that they may be taken into account. While COS air-monitoring
data are consistent with the dominance of plant uptake, improved
interpretation of these data should incorporate the soil flux
parameterizations suggested here.</p></abstract-html>
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