<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-16-3041-2016</article-id><title-group><article-title>Simulating secondary organic aerosol in a regional air quality <?xmltex \hack{\newline}?> model using
the statistical oxidation model –  Part 2: <?xmltex \hack{\newline}?>Assessing the influence of vapor wall
losses</article-title>
      </title-group><?xmltex \runningtitle{Simulating Secondary Organic Aerosol in a Regional Air Quality Model}?><?xmltex \runningauthor{C.~D. Cappa et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Cappa</surname><given-names>Christopher D.</given-names></name>
          <email>cdcappa@ucdavis.edu</email>
        <ext-link>https://orcid.org/0000-0002-3528-3368</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Jathar</surname><given-names>Shantanu H.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4106-2358</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Kleeman</surname><given-names>Michael J.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Docherty</surname><given-names>Kenneth S.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Jimenez</surname><given-names>Jose L.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-6203-1847</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Seinfeld</surname><given-names>John H.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1344-4068</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Wexler</surname><given-names>Anthony S.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Department of Civil and Environmental Engineering, University of
California, Davis, CA, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Mechanical Engineering, Colorado State University, Fort
Collins, CO, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Alion Science and Technology, Research Triangle Park, NC, USA</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Cooperative Institute for Research in Environmental Sciences and
Department Chemistry and Biochemistry, <?xmltex \hack{\newline}?>University of Colorado, Boulder, CO,
USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Division of Chemistry and Chemical Engineering and Division of
Engineering and Applied Science, <?xmltex \hack{\newline}?>California Institute of Technology,
Pasadena, CA, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Christopher D. Cappa (cdcappa@ucdavis.edu)</corresp></author-notes><pub-date><day>9</day><month>March</month><year>2016</year></pub-date>
      
      <volume>16</volume>
      <issue>5</issue>
      <fpage>3041</fpage><lpage>3059</lpage>
      <history>
        <date date-type="received"><day>21</day><month>October</month><year>2015</year></date>
           <date date-type="rev-request"><day>3</day><month>November</month><year>2015</year></date>
           <date date-type="rev-recd"><day>29</day><month>January</month><year>2016</year></date>
           <date date-type="accepted"><day>19</day><month>February</month><year>2016</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://acp.copernicus.org/articles/.html">This article is available from https://acp.copernicus.org/articles/.html</self-uri>
<self-uri xlink:href="https://acp.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/.pdf</self-uri>


      <abstract>
    <p>The influence of losses of organic vapors to chamber walls during secondary
organic aerosol (SOA) formation experiments has recently been established.
Here, the influence of such losses on simulated ambient SOA concentrations
and properties is assessed in the University of California at Davis / California Institute of Technology (UCD/CIT) regional air quality model using
the statistical oxidation model (SOM) for SOA. The SOM was fit to laboratory
chamber data both with and without accounting for vapor wall losses
following the approach of Zhang et al. (2014). Two
vapor wall-loss scenarios are considered when fitting of SOM to chamber data
to determine best-fit SOM parameters, one with “low” and one with “high”
vapor wall-loss rates to approximately account for the current range of
uncertainty in this process. Simulations were run using these different
parameterizations (scenarios) for both the southern California/South Coast
Air Basin (SoCAB) and the eastern United States (US). Accounting for vapor
wall losses leads to substantial increases in the simulated SOA
concentrations from volatile organic compounds (VOCs) in both domains, by factors of <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2–5
for the low and <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5–10 for the high scenarios. The magnitude of
the increase scales approximately inversely with the absolute SOA
concentration of the no loss scenario. In SoCAB, the predicted SOA fraction
of total organic aerosol (OA) increases from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.2 (no) to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.5
(low) and to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.7 (high), with the high vapor wall-loss
simulations providing best general agreement with observations. In the
eastern US, the SOA fraction is large in all cases but increases further
when vapor wall losses are accounted for. The total OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO ratio
captures the influence of dilution on SOA concentrations. The simulated
OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO in SoCAB (specifically, at Riverside, CA) is found to
increase substantially during the day only for the high vapor wall-loss
scenario, which is consistent with observations and indicative of
photochemical production of SOA. Simulated O : C atomic ratios for both SOA
and for total OA increase when vapor wall losses are accounted for, while
simulated H : C atomic ratios decrease. The agreement between simulations and
observations of both the absolute values and the diurnal profile of the O : C
and H : C atomic ratios for total OA was greatly improved when vapor
wall-losses were accounted for. These results overall demonstrate that vapor
wall losses in chambers have the potential to exert a large influence on
simulated ambient SOA concentrations, and further suggest that accounting
for such effects in models can explain a number of different observations
and model–measurement discrepancies.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Particulate organic matter, or organic aerosol (OA), is derived from primary
emissions or from secondary chemical production in the atmosphere from the
oxidation of volatile organic compounds (VOCs). OA makes up a substantial
fraction of atmospheric submicron particulate matter (Zhang et al.,
2007), influencing the atmospheric fate and impact of PM on regional and
global scales. Gas-phase oxidation of VOCs leads to the formation of
oxygenated product species that can condense onto existing particles or
nucleate with other species to form new particles (e.g.
Ziemann and Atkinson, 2012). Much of the understanding regarding the
formation of secondary organic aerosol (SOA) via condensation has been
derived from experiments conducted in laboratory chambers. In a typical
experiment, a precursor VOC is added to the chamber and exposed to an
oxidant (e.g OH, O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> or NO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. As both the precursor VOC and the
oxidation products react with the oxidant, SOA is formed. The amount of SOA
formed per amount of precursor reacted (i.e. the SOA mass yield) can then be
quantified (e.g. Odum et al., 1996). Such SOA
yield measurements form the basis of most parameterizations of SOA formation
in regional air quality and global chemical-transport and climate models
(Tsigaridis et al., 2014). However, too often simulated SOA
concentrations underestimate observed values, especially in polluted
regions, and sometimes dramatically so (Heald et al., 2005; Volkamer et
al., 2006; Ensberg et al., 2014). There have been various efforts to account
for model–measurement disparities including, most notably, (i) the addition
of new SOA precursors in the form of so-called semi-volatile and
intermediate volatility organic compounds, S/IVOCs, including treating
primary organic aerosol as semi-volatile (Robinson
et al., 2007); (ii) the addition of ad hoc “ageing” schemes on top of
existing parameterizations of SOA from VOCs (Lane et al., 2008b; Tsimpidi
et al., 2010; Dzepina et al., 2011); (iii) updating of aromatic SOA yields
(Dzepina et al., 2009); and (iv) production of SOA in the aqueous phase
in aerosol–water, clouds and fogs (Ervens et al., 2011).
More recently, concerns over the influence of vapor wall losses on the
experimental chamber data used to develop the parameterizations have arisen
(Matsunaga and Ziemann, 2010; Zhang et al., 2014). The influence of
erroneously low SOA yields due to vapor wall losses on simulated SOA
concentrations in three-dimensional (3-D) regional models and properties is the
focus of the current work.</p>
      <p>Recent observations have demonstrated that organic vapors can be lost to
Teflon chamber walls, and that the extent of loss is related to the compound
vapor pressures with lower vapor pressure compounds partitioning more
strongly to the walls than higher vapor pressure compounds (Matsunaga and
Ziemann, 2010; Kokkola et al., 2014; Krechmer et al., 2015; Yeh and Ziemann,
2015; Zhang et al., 2015). These results suggest that vapor wall losses
during SOA formation experiments could potentially bias observed SOA
concentrations. Indeed, Zhang et al. (2014) observed
that SOA yields from toluene <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> OH photooxidation depend explicitly on the
seed particle surface area, all other conditions being equal. They
interpreted these observations using a dynamic model of particle growth
coupled with a parameterizable gas-phase chemical mechanism, the statistical
oxidation model (SOM; Cappa and Wilson, 2012). They
determined that substantial vapor wall losses were most likely the cause of
this dependence, with biases of up to a factor of <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 4 for
these experiments. Further, they estimated for this system that the vapor
wall-loss rate coefficient (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> was <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for their 25 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> chamber. This value of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is in
reasonable agreement both with theoretical expectations – so long as the
vapor-wall accommodation coefficient (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mtext>wall</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is &gt; 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> – and with results of Ziemann and colleagues (Matsunaga and
Ziemann, 2010; Yeh and Ziemann, 2015), who estimated <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for their 8 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> chamber.
Kokkola et al. (2014) have also suggested vapor
wall losses can impact SOA yields, although they determined a much larger
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> of <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for their 4 m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>
chamber. Recent direct measurements of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> for a range of oxidized
VOCs (OVOCs), produced from reactions of VOCs in traditional chambers,
suggest that <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> can vary by an order of magnitude (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>–3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and that <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is
dependent on the OVOC vapor pressure (Zhang et al.,
2015); such low <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values imply that the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is
&lt; 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and controls the rate of vapor loss to the walls.</p>
      <p>Although the exact value of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is likely chamber-specific (which
likely contributes to some of the abovementioned variability in
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and thus the exact influence of vapor wall losses on chamber SOA
measurements remains somewhat uncertain, the preponderance of evidence
suggests that such effects are important. Existing SOA parameterizations
have typically not been determined with explicit accounting for vapor wall
losses. Consequently, they likely underestimate actual SOA formation in the
atmosphere where walls are much less important (although dry deposition of
vapors may still be a factor; Hodzic et al., 2014). Two
recent efforts have attempted to estimate the influence of vapor wall losses
on SOA concentrations in the atmosphere (Baker et al., 2015; Hayes et
al., 2015). One of the studies
(Baker et al., 2015)
builds on the existing two-product parameterization of SOA formation in the
Community Multiscale Air Quality (CMAQ) model and simply scales the yields
of the semi-volatile products up by factors of 4. In the two-product model,
a given VOC reacts to form two semi-volatile products that partition to the
condensed phase. The semi-volatile products are formed with mass yields,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>y</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and partitioning coefficients, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>K</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, that have been determined by
fitting the model to data from chamber experiments in which vapor wall
losses were not accounted for. The other study
(Hayes et al., 2015) used a similar
yield-scaling approach, but within the volatility basis set (VBS)
four-product framework to represent SOA formation, and they scaled the mass
yields for only the semi-volatile product species from aromatics. Not
surprisingly, these simple ad hoc scaling methods demonstrated that increasing the
yields of the semi-volatile products from their originally parameterized
values increases the simulated SOA concentration, but quantitative
interpretation of the results is difficult. This is an especially important
consideration given that different SOA systems may exhibit different
sensitivities to vapor wall losses, owing to differences in the product
species volatility distribution and the extent to which multi-generational
ageing influences the SOA formation. More robust assessment of the influence
of vapor wall losses on simulated SOA concentrations in regional air quality
models is thus needed.</p>
      <p>In this study, the SOM SOA model (Cappa and Wilson,
2012) is utilized to examine the influence of vapor wall losses on simulated
SOA concentrations and O : C atomic ratios in a 3-D regional air quality model,
specifically the University of California at Davis / California Institute of Technology (UCD/CIT) (Kleeman and Cass, 2001). What
distinguishes the present approach is that the potential influence of vapor
wall losses is inherently accounted for during the development of the SOM
SOA parameterization (Zhang et al., 2014). This can
be contrasted with a simple scaling of an existing parameterization. The
current approach allows for more detailed characterization of different
precursor species, reaction conditions (e.g. NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> sensitivities) and the
complex interplay of various timescales (reaction, gas/wall partitioning and
gas/particle partitioning). This also allows for examination of the extent
to which different assumptions regarding the value of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (i.e. the
first-order rate constant for vapor loss to chamber walls) during
development of the SOA parameterization impact simulations of ambient SOA
concentrations. Further, the SOM framework simulates O : C atomic ratios in
addition to OA mass concentrations, and thus allows for more detailed
assessment of the simulated OA and comparison with observations. Our results
demonstrate that accounting for vapor wall losses can have a substantial
impact on simulated SOA concentrations and suggest that there may be
regionally specific differences.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
<sec id="Ch1.S2.SS1">
  <title>Air quality model</title>
      <p>Regional air quality simulations were performed using the UCD/CIT chemical-transport model (Kleeman and Cass, 2001) for two geographical
domains: (i) the Southern California Air Basin (SoCAB) and (ii) the eastern
United States (US). Details regarding the general model configuration and emissions
inventory used have been previously discussed (Jathar et
al., 2015a), and the reader is referred to that work for further
information. Details specific to the current work are provided in the
following sections. Model simulations were run for SoCAB from 20 July  to
2 August  2005 and for the eastern US from 20 August  to 2 September  2006.
Model spatial resolution was higher in SoCAB (8 km <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 8 km) than in the
eastern US (36 km <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 36 km) to account for the different domain sizes.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Statistical oxidation model for SOA</title>
      <p>SOA formation from six VOC classes was simulated using the statistical
oxidation model (Cappa and Wilson, 2012; Cappa et al., 2013), which was
recently implemented in the UCD/CIT model (Jathar et al.,
2015a). The VOC classes considered are long alkanes, benzene, high-yield
aromatics (i.e. toluene), low-yield aromatics (i.e. m-xylene), isoprene and
terpenes (including both mono- and sesquiterpenes). SOM is a parameterizable
model that simulates the multi-generational oxidation of the product species
formed from reaction of the SOA precursor VOCs. In SOM, a “species” is
defined as a molecule with a specific number of carbon and oxygen atoms
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>C</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>O</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, respectively), and where the VOC-specific properties of
these SOM species are determined through fitting to laboratory observations.
Reactions of a SOM species lead to either functionalization (i.e. addition
of oxygen atoms while conserving the number of carbon atoms) or
fragmentation (i.e. the production of two species, which individually have
fewer carbon atoms but where the total carbon is conserved, and where each
new species adds one additional oxygen atom). The particular tunable
parameters in SOM are the probability of adding one, two, three or four
oxygen atoms per reaction, referred to as <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mtext>XO</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>; the decrease in vapor
pressure per added oxygen, referred to as <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>LVP; and the probability
of fragmentation, which is related to the O : C atomic ratio of a given
species as <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>P</mml:mi><mml:mi mathvariant="normal">frag</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msup><mml:mfenced open="(" close=")"><mml:mi mathvariant="normal">O</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>:</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">C</mml:mi></mml:mfenced><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi mathvariant="normal">frag</mml:mi></mml:msub></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> and where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>frag</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the tunable parameter.
SOA formation from the semi-volatile SOM species assumes that partitioning
is described according to absorptive gas-particle partitioning theory
(Pankow, 1994), and the gas-particle mass transfer has
been simulated using dynamic partitioning (Kleeman and Cass, 2001; Zhang
et al., 2014; Jathar et al., 2015a). The parameters used in the current work
have been determined by fitting them to time-dependent data from SOA formation
experiments conducted in the Caltech chamber both with and without
accounting for vapor wall losses during the fitting process (discussed
further below); references for the specific experiments considered are
provided in Table S1 in the Supplement. The specific influence of considering
multi-generational ageing on simulated SOA concentrations and properties is
discussed in a companion paper (Jathar et al.,
2016). The use of the SOM to represent SOA formation leads to an increase
of about a factor of 2.5 or less in computer processing time required
compared to use of the two-product model.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Accounting for vapor wall loss</title>
<sec id="Ch1.S2.SS3.SSS1">
  <title>SOM</title>
      <p>Vapor wall losses have been accounted for using SOM, as detailed in
Zhang et al. (2014). Vapor wall loss is treated as a
reversible, absorptive process with vapor uptake specified using a
first-order rate coefficient (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and the desorption rate related to
the effective saturation concentration, <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, of the organic species
and the effective absorbing mass of the walls (Matsunaga and Ziemann,
2010). Unique SOM fits (i.e. values of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mtext>frag</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>LVP and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>p</mml:mi><mml:mtext>XO</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> have been determined for different assumed values of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>.
Best-fit values are provided in Table S1. It should be noted that the
influence of vapor wall losses is inherent in the fit parameters, and in the
absence of walls (i.e. in the atmosphere) the predicted SOA formed will be
larger when the fits account for vapor wall losses. A base case set of
parameters with no vapor wall losses assumed during fitting (termed SOM-no)
was determined using <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0. In Zhang et al. (2014), an optimal value of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> was
determined for the California Institute of Technology chamber based on
simultaneous fitting of the SOM to a set of toluene photooxidation
experiments conducted at different seed particle concentrations. Unlike in
Zhang et al. (2014), the values of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> used here were not determined
during model fitting. This is because the absolute value of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is not
well constrained by a single experiment, and the simulations require vapor
wall-loss-corrected parameters for VOCs besides toluene. Therefore, two
specific bounding cases that account for vapor wall loss are instead
considered based on the results from Zhang et al. (2014). Specifically,
values of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and 2.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
are considered, corresponding to a low vapor wall-loss case
(SOM-low) and high vapor wall-loss case (SOM-high), respectively.</p>
      <p>An important aspect of vapor wall loss is that the impact it has on SOA
concentrations is dependent upon the timescale associated with
vapor-particle equilibration (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mtext>v-p</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>; McVay et al., 2014; Zhang
et al., 2014). The <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mtext>v-p</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is related to the accommodation
coefficient associated with vapor condensation on particles, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mtext>particle</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. Above a vapor-particle accommodation
coefficient of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mtext>particle</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1 variations in the exact value of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mtext>particle</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> does not influence the effects of vapor wall losses. This is
not to say that vapor wall losses have no influence on the amount of SOA
formed when <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mtext>particle</mml:mtext></mml:msub><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>≥</mml:mo></mml:mrow></mml:math></inline-formula> 0.1, only that the net impact does
not depend on <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mtext>particle</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. Below this value, vapor-particle
equilibration is slowed and the effects of loss of vapors to the walls are
accentuated. Thus, a conservative estimate that minimizes the influence of
vapor wall losses on SOA formation is obtained using
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mtext>particle</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 0.1. Here, data fitting and parameter determination was performed
assuming that <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mtext>particle</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1, and is thus a conservative
estimate.</p>
      <p>SOM was fit to time-dependent SOA formation experiments conducted in the
California Institute of Technology chamber, following the methodologies
described in Cappa et al. (2013) and
Zhang et al. (2014). Observed suspended particle
concentrations have been corrected only for physical deposition on chamber
walls, which is appropriate since vapor wall losses are accounted for
separately by SOM. Best-fit values for the SOM parameters for the base case
(SOM-no) are given in Jathar et al. (2015a) and values for
SOM-low and SOM-high determined here are given in Table S1, along with the
sources of the experimental data. Parameters have been separately determined
for experiments conducted under low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> conditions
since the SOA yields differ. Example results that illustrate the influence
of vapor wall losses on simulated SOA yields are presented in Fig. S1 in the Supplement for
box model simulations that have been conducted using the best-fit parameters
determined for toluene SOA (low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> conditions), but where the
simulations are run assuming there are no walls (i.e. by setting
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0).</p>
</sec>
<sec id="Ch1.S2.SS3.SSS2">
  <title>Two-product model</title>
      <p>Ideally, SOA levels from the SOM-based simulations can be compared with
similar results based on the commonly used two-product model. To do so
involves determining new parameters for the two-product model in which vapor
wall losses are explicitly accounted for. Therefore, vapor wall-loss-corrected SOA yield curves (i.e. [SOA] vs. [<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>HC], where <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>HC is the concentration of reacted hydrocarbon) were generated with SOM
using the parameters determined by fitting SOM to the original chamber data
when <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> &gt; 0, but now where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is set to zero. The
two-product model could then be fit to these “corrected” yield curves to
determine vapor wall-loss-corrected yields and partitioning coefficients.
These new fits would inherently account for the influence of vapor wall loss
since the two-product model is being fit to the corrected “wall-less” data
and thus differ from ad hoc scaling of yields. However, it was determined that the
two-product fits were not sufficiently robust across the entire suite of
compounds and vapor wall-loss conditions considered to be implemented in the
atmospheric model. An example for SOA from dodecane <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> OH under
low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> reaction conditions is shown in Fig. S2. We have determined
that this lack of robustness is a result of the limited dynamic range of the
two-product model. This can be contrasted with the SOM, which includes many
more species that span a wider, more continuous volatility range, making it
more flexible when fitting the laboratory data. More specifically, the SOA
concentrations from the chamber observations, both uncorrected and
corrected, ranged from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 to 500 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, often with
few data points at concentrations less than <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Thus, when fits were performed, inconsistent behavior between
the different vapor wall-loss conditions was obtained over the
atmospherically relevant concentration range (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1–20 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Attempts were made to fit the two-product model over a
restricted concentration range or to fit using log([SOA]) instead of [SOA].
However, neither effort led to sufficiently robust results (although both
did lead to improvements). This null result suggests that simple scaling of
two-product yields
(Baker et al., 2015)
to account for the effects of vapor wall losses may not be appropriate. This
may similarly apply to scaling of VBS parameters
(Hayes et al., 2015), although the
greater flexibility of the VBS (commonly implemented with four products,
instead of two) can potentially allow for unique “wall-less” fits to be
determined (Hodzic et al., 2015). The extent
to which such alternative methods can robustly account for vapor wall losses
that are computationally less intensive than SOM will be explored in future
work.</p>
</sec>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Primary organic aerosol and IVOCs</title>
      <p>Primary organic aerosol (POA) derived from anthropogenic (e.g. vehicular
activities, food cooking) or pyrogenic (e.g. wood combustion) sources are
simulated assuming that the POA is non-volatile. This is the standard
assumption in the CMAQ model framework (Simon and Bhave,
2011), and thus is adopted here. It is known that some POA is semi-volatile,
not non-volatile as assumed here. Had POA been treated within a
semi-volatile framework (Robinson et al., 2007),
such that some fraction of the POA can evaporate (i.e. SVOCs) and react
within the gas-phase and be converted to SOA (sometimes improperly referred
to as “oxidized POA”), then the amount of POA would likely decrease (due
to evaporation) and the amount of simulated SOA would increase (due to
condensation of oxidized SVOC vapors); the total OA concentration (POA <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>
SOA) may or may not increase as a result, depending on the details of the
parameterization and the atmospheric conditions. Additionally, nearly all
modeling efforts in which POA is treated as semi-volatile have also included
contributions from gas-phase IVOCs as an added class of SOA precursors;
these two issues are rarely implemented independently in models, although
their contributions can be separately tracked. Whereas simply treating POA
as semi-volatile may or may not lead to an increase in the total OA
concentration, the introduction of new SOA precursor mass in the form of
IVOCs will inevitably lead to production of more SOA in the model. The
relative importance of IVOCs will depend on the amount of added IVOC mass
and the propensity of these IVOC vapors to form SOA in the model (i.e. their
effective SOA yield). In the current study, we do not explicitly consider
the potential for IVOCs to contribute to the ambient SOA burden, focusing
instead on how vapor wall losses influence SOA formation from VOCs. We will
aim to consider contributions from IVOCs and how they are influenced by
vapor wall losses in future studies. Regardless, the implications of our
particular treatment (non-volatile POA excluding IVOCs) are discussed below.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S2.SS5">
  <title>Model simulations and outputs</title>
      <p>Six individual model simulations have been carried out to determine the
spatial distribution of SOA concentrations. Each simulation used one of the
SOM parameterizations, i.e. SOM-no, SOM-low or SOM-high with either the low-
or high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameters. Each precursor VOC is allowed to react with
either OH, O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> or NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> as characterized by an oxidant-specific rate
coefficient, although the products and product distributions of the
first-generation products are assumed to be oxidant independent. This
simplification is identical to that employed in CMAQv4.7
(Carlton et al., 2010). Reactions of subsequent
oxidized SOM products then occur only via reaction with OH radicals
according to the SOM parameterization associated with that precursor VOC (as
determined by fitting the photooxidation experiments). Besides the absolute
SOA concentration, SOM also allows for explicit calculation of the average
(and precursor-specific) O : C and H : C atomic ratios and of the SOA volatility
distribution, which characterizes the distribution of particulate and
gas-phase mass concentrations with respect to <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>C</mml:mi><mml:mo>∗</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>. To estimate the
O : C of the total OA (POA <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> SOA), it is assumed that the non-volatile POA
has a constant O : C <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.2 and H : C <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 2.0 (Ng et
al., 2011). Since the simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> is just a combination of
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> and (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula>, assuming a different value for
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula> would change the absolute value of (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> but not any
dependence on simulation conditions. This is similarly true for
(H : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>14-day averaged SOA concentrations, in <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, for
<bold>(a)</bold> SoCAB and <bold>(d)</bold> the eastern US for the SOM-no simulations. The averaging
time periods are from 20 July  to  2 August 2005 for SoCAB and
from 20 August  to  2 September 2006 for the eastern US. Panels
<bold>(b, e)</bold> show the ratio between the SOA concentrations for the SOM-low and the
SOM-no simulations and panels <bold>(c, f)</bold> show the ratio between the SOM-high and
SOM-no simulations. Results shown in all panels are the average of the low- and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
simulations. Note that the color scale for the absolute
SOA concentration is continuous whereas the color scale in the ratio plots
is discrete.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3041/2016/acp-16-3041-2016-f01.jpg"/>

        </fig>

      <p>As noted above, unique sets of SOM parameters were fit to experiments
conducted under either low- or high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> conditions assuming a
particular value for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. Since each simulation used a single set of
SOM fit parameters (e.g. SOM-no fit to low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> experiments), the SOA
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterization used in a given simulation is independent of the
actual simulated ambient NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> concentrations or NO <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> ratio.
Consequently, comparison between the simulations conducted using the low-
and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations gives an indication of the range
expected from variability in NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> levels, and the average between the
two simulations provides a representation that is intermediate between these
two extremes. Unless otherwise specified, reported values are for the
average of the simulations run using the low- and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
parameterizations. This approach towards understanding the influence of
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> is different than some previous approaches that attempted to
account for the SOA NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> dependence in a more continuously variable
manner. For example, some simulations using the two-product approach have
used the instantaneous NO <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> ratios predicted by the model to
allow for
distinguishing between low- and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> products and SOA yields for
aromatic VOCs (Carlton et al., 2010). Similarly,
instantaneous VOC <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> ratios have been used with VBS-type models for
aromatic VOCs to allow for interpolation between the two regimes
(Lane et al., 2008a). Typically, these efforts have not
considered the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> dependence of monoterpene and sesquiterpene yields
even though it is experimentally established that the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> condition
(and more specifically, the NO <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> ratio) influences SOA yields for
both aromatic and biogenic compounds (e.g. Ng et al., 2007a, b). For most VOCs, the functional dependence of the SOA yield on the
VOC <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> ratio or the NO <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> ratio is not well established, making
it difficult to understand how well the interpolation methods work (SOA
formation from isoprene is a notable exception; e.g. Xu
et al., 2014). Further, modeled NO <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> ratios may be off by orders of
magnitude, most likely due to poor representation of HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentrations
(Carlton et al., 2010), making it difficult to
understand how well the conditions of the laboratory translate to the model
environment. By considering the low- and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations
separately, i.e. the approach used in the current study, bounds on the
overall influence of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> on the simulated SOA can be established.
However, this approach will not capture how the simulated SOA may vary due
to spatial and temporal variations in the model NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and oxidant fields.
Future efforts will aim to account for the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> dependence of SOA
formation in a more continuously varying manner, and to account for recent
updates to the detailed isoprene oxidation mechanism
(Pye et al., 2013).</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <title>General influence of vapor wall loss on simulated SOA</title>
      <p>The spatial distribution of the SOM-no model SOA concentrations is shown for
SoCAB and the eastern US using the average from the simulations carried out
using the low- and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations
(Fig. 1a–b; again, the low- and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
designations here refer only to the experimental conditions under which the
SOM parameters were determined, not the actual NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> conditions in the
UCD/CIT model). For SoCAB, predicted SOA concentrations are largest in and
around downtown Los Angeles and in the forested regions of the Los Padres
National Forest and the Santa Monica Mountains National Recreation Area in
the northwest (NW) quadrant. The spatial distribution of SOA is similar to that obtained
using the conventional two-product SOA parameterization (Jathar et al.,
2015a, b). For the eastern US, predicted SOA concentrations are largest in
the southeast, in particular around Atlanta, Georgia. Overall, the simulated
SOA concentrations with the SOM-no model are larger in the eastern US than
in SoCAB, reflecting the relatively strong influence of biogenic emissions
in this region.</p>
      <p>The influence of vapor wall losses on the simulated ambient SOA
concentrations is illustrated in Fig. 1c–f as the
ratio between the SOA from the SOM-low and SOM-high simulations to the
SOM-no (no wall losses) simulation. This ratio will be referred to generally
as the wall loss impact (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,low</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,high</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Values of
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> larger than 1 indicate that accounting for vapor wall losses as
part of the SOM parameterization leads to an increase in the predicted SOA
concentrations. In the SoCAB, the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,low</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> varies from 1.5 to 4.5, while
the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,high</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> varies from 3 to more than 10. The largest ratios
(indicating the largest impact of accounting for vapor wall losses) tend to
occur in more remote locations as this is where concentrations are lower
(Fig. 2). However, the impact is still large in
downtown Los Angeles and the greater LA region (average <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,low</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2.5 and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,high</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5). In the eastern
US, the simulated <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> vary over a similar range as in SoCAB, with
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,low</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> varying from 1.5 to 5 and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,high</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from 3 to 10. There is
again a general, although not exact, inverse relationship between
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and the absolute SOA concentrations; the greater scatter in the
eastern US compared to SoCAB at low SOA concentrations likely reflects the
larger spatial range considered. The smallest simulated <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values
occur across the southeast and up the eastern seaboard (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,low</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2.5 and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall,high</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5) while the largest
values occur over the Great Lakes and Michigan, Nebraska, and the Gulf of
Mexico and Atlantic Ocean; there is a steep increase going from land to sea.
If <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values are calculated using the simulated SOA concentrations
from either the low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> or high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations
individually, as opposed to the average values used above, very similar
results are obtained (Fig. S3).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Variation of the ratio between simulated SOA concentrations from
SOM-low (red) and SOM-high (blue) simulations to SOM-no simulations for
<bold>(a)</bold> SoCAB and <bold>(b)</bold> the eastern US as a function of the absolute SOA concentration
from the SOM-no simulations. Results shown are the average of the low- and
high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> simulations. Individual data points are shown along with box
and whisker plots.</p></caption>
          <?xmltex \igopts{width=213.395669pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3041/2016/acp-16-3041-2016-f02.pdf"/>

        </fig>

      <p>Regional air quality models have historically overestimated the
urban-to-regional gradient in total OA concentrations.
Robinson et al. (2007) showed that the simulated
urban-to-regional gradient could be reduced and made more consistent with
observations by treating POA as semi-volatile and adding SVOCs and IVOCs as
SOA-forming species. The current results suggest a complementary
explanation, namely that the urban-to-regional gradient, can be reduced when
vapor wall losses are accounted for since <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> generally increases with
decreasing SOA concentration and since POA is identical between the
different model parameterizations. Consequently, larger <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mtext>wall</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> are found
outside of the major source regions, which decreases the urban-to-regional
contrast. Indeed, the ratio between the predicted average SOA in downtown LA
(urban) to that over the Pacific Ocean near the coast of LA (regional) and
decreases from 2.3 (SOM-no) to 1.5 (SOM-low) to 1.3 (SOM-high), for example.
Additionally, it has been suggested that the typical underprediction of SOA
by air quality and chemical transport models relative to observations might
increase with photochemical age (Volkamer et al., 2006). The current
results suggest the possibility that the SOA concentrations in more remote
(lower concentration) regions may be underestimated in models to a greater
extent in a relative sense than in high-source (higher concentration)
regions due to a lack of accounting for vapor wall losses, although the
absolute differences in SOA concentrations may be larger in regions where
absolute concentrations are larger.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>OA composition and concentrations</title>
      <p>The simulated fraction of total OA that is SOA (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is substantially
smaller in SoCAB than in the eastern US, especially the southeast US
(Fig. 3). The predicted <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values vary
spatially within a given region, with the SOM-no simulations in the general
range of <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1–0.3 for SoCAB and <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.4–0.9 for
the eastern US. This difference between regions results from the substantial
POA emissions in SoCAB and the large emissions of biogenic VOCs across the
southeast US. Consequently, accounting for vapor wall losses has a larger
impact on the absolute total OA (SOA <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> POA) concentrations in the eastern
US than it does in SoCAB, although the impact in both regions is
substantial. For SoCAB, the predicted 24 h average <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> range increases
to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.2–0.5 for SOM-low and to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.4–0.8 for
SOM-high simulations. These model results can be compared with measurements
from the 2005 SOAR field study in Riverside, CA, which overlaps with the
simulation period. The observed <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> during SOAR ranged from
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.6 in early morning to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.9 in midday, with
a campaign-average of <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.78
(Docherty et al., 2011).
Measurements at Pasadena, CA, during a later time period, June 2010 during
the CalNex study, give similar results with the campaign-average <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.6 (Hayes et al., 2013). (Note that here we are equating SOA with
the “oxygenated organic aerosol,” or OOA factors that are obtained from
positive matrix factorization of the measured OA time series, and equating
POA with the sum of hydrocarbon-like OA (HOA), cooking-derived OA (COA), and
“local” OA (LOA).) The SOM-high simulations in SoCAB are most consistent
with these observations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>14-day averaged <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, the ratio between SOA and total OA
concentrations, for (top panels, <bold>a</bold>, <bold>b</bold>, <bold>c</bold>) SoCAB and (bottom panels, <bold>d</bold>, <bold>e</bold>, <bold>f</bold>)
the eastern US for the <bold>(a, d)</bold> SOM-no, <bold>(b, e)</bold> SOM-low and <bold>(c, f)</bold> SOM-high
simulations.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3041/2016/acp-16-3041-2016-f03.pdf"/>

        </fig>

      <p>For the eastern US, the predicted <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> range increases from 0.4–0.9 for
SOM-no to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.7–0.9 for SOM-low and to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.8–1 for SOM-high. These predicted values can be compared with measurements made
at a few locations in the southeastern US (specifically, sites in Alabama
and Georgia), which show that the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in this region exhibits a strong
seasonal dependence and some spatial variation (Xu et
al., 2015b). The measurements in spring and summer indicate that the total
OA is dominated by SOA, with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> measurements ranging from 0.7 to 1 and
with the smaller values observed at the more urban sites. The predicted
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from the SOM-low and SOM-high simulations are most consistent with
this range, with the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> from the SOM-no simulations being on the low
side, especially in comparison with the more rural sites.</p>
      <p>The simulated total OA concentrations are compared to ambient OA
measurements made at the STN (Speciated Trends Network) and IMPROVE
(Interagency Monitoring of Protected Visual Environments; The Visibility Information Exchange Web System (VIEWS 2.0),
2015) air quality monitoring sites in SoCAB and the eastern US; the regional
differences in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> should be kept in mind for this model–measurement
comparison. A map of sites is shown in Fig. S4. STN sites tend to be more
urban and have higher OA concentrations compared to IMPROVE sites, which
tend to be more remote. OA concentrations are estimated as the measured
organic carbon (OC) concentrations times 2.1 for IMPROVE sites and as 1.6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> ([OC]–0.5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for STN sites
(Turpin and Lim, 2001). The <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
offset for the STN sites arises because the IMPROVE data are both artifact
and blank corrected while the STN data are only artifact corrected
(Subramanian et al., 2004). The difference in scaling
factors (2.1 vs. 1.6) approximately accounts for differences in the OA/OC
conversion between more urban and more rural networks (Turpin
and Lim, 2001). Given the generally regional character of OA in much of the
eastern US, it may be that the difference in OM/OC (the organic matter to organic carbon ratio) between the STN and
IMPROVE sites may be smaller than assumed here (most likely with the 1.6
being too low, leading potentially to an underestimate in the OA at the STN
sites). We note that IMPROVE data may also be biased low by <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 25 % in the southeast (SE) US summer due to evaporation after sampling
(Kim et al.,
2015).</p>
      <p>Table 1 lists statistical metrics of fractional
bias, normalized mean square error (NMSE) and the concordance correlation
coefficients that capture model performance for OA for all simulations for
both domains across the STN and IMPROVE monitoring networks. Fractional bias
is calculated as:
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mtext>Fractional</mml:mtext><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mtext>bias</mml:mtext><mml:mo>=</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mfenced open="(" close=")"><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub></mml:mfenced></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:math></disp-formula>
          and the NMSE as
            <disp-formula id="Ch1.E2" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mtext>NMSE</mml:mtext><mml:mo>=</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mfenced close="|" open="|"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mfenced close=")" open="("><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where the subscripts sim and obs refer to the simulated and observed OA
concentrations, respectively. The concordance correlation coefficients
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>c</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are calculated as
            <disp-formula id="Ch1.E3" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>c</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>s</mml:mi><mml:mtext>sim,obs</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:msubsup><mml:mi>s</mml:mi><mml:mtext>sim</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>+</mml:mo><mml:msubsup><mml:mi>s</mml:mi><mml:mtext>obs</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>+</mml:mo><mml:msup><mml:mfenced open="(" close=")"><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> indicate the mean,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi>s</mml:mi><mml:mtext>sim</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msubsup><mml:mi>s</mml:mi><mml:mtext>obs</mml:mtext><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula> are the variance and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>s</mml:mi><mml:mtext>sim,obs</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the
covariance of the simulated and observed OA concentrations. Scatter plots
are shown in Figs. S5 and S6; many more sites are considered in the
eastern US than in the SoCAB given the larger geographical domain and
distribution of sites. In both regions, the SOM-no simulations underpredict
the STN and IMPROVE observations, especially in the SoCAB. The negative bias
of the SOM-no simulations is generally improved as vapor wall losses are
accounted for. For both the STN and IMPROVE sites in the SoCAB the SOM-high
simulations give best agreement. For the eastern US STN sites, an average of
the SOM-low and SOM-high simulations provides the best agreement. For the
eastern US IMPROVE sites, the SOM-low simulations provide the best
agreement, although with some overprediction. (If the eastern US STN and
IMPROVE measurements do underestimate the actual OA concentrations, the
degree to which accounting for vapor wall losses improves the
model–measurement comparison will increase.) The simulated
anthropogenic–biogenic SOA split is found to be approximately the same at
sites within both networks (e.g. Fig. 4). This
occurs even though the IMPROVE sites tend to be more remote than the STN
sites in the eastern US, and reflects the regional character of SOA in that
region. Ultimately, the comparisons suggest that accounting for vapor wall
losses can improve model–measurement agreement, although there are
differences in terms of whether the SOM-high simulations or SOM-low
simulations produce the best agreement. That the OA concentrations for the
SOM-high simulations remains slightly lower than the observations for STN
sites in SoCAB could potentially result from the non-volatile treatment of
POA, the exclusion of IVOCs in the current model or uncertainty in the POA
emission inventory.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Model performance metrics determined for the three simulation
groupings (SOM-no, SOM-low and SOM-high) for the low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>, high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
and average parameterizations for STN and IMPROVE sites in SoCAB and the
eastern US. Fractional bias is calculated as
2 (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>-<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo></mml:mrow></mml:math></inline-formula>(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and NMSE as
abs[(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>-<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>/</mml:mo></mml:mrow></mml:math></inline-formula>(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,sim</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>OA,obs</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>],
and the reported values are the averages over all data points as
percentages. Note that a negative fractional bias indicates observed [SOA]
&gt; simulated [SOA], i.e. that the simulations are underpredicting.
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> are the concordance correlation coefficients from Eq. (3).</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.95}[.95]?><oasis:tgroup cols="14">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right" colsep="1"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right" colsep="1"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:colspec colnum="11" colname="col11" align="right" colsep="1"/>
     <oasis:colspec colnum="12" colname="col12" align="right"/>
     <oasis:colspec colnum="13" colname="col13" align="right"/>
     <oasis:colspec colnum="14" colname="col14" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry namest="col3" nameend="col8" align="center" colsep="1">Southern California </oasis:entry>  
         <oasis:entry namest="col9" nameend="col14" align="center">Eastern US </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry rowsep="1" namest="col3" nameend="col5" align="center">STN<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mtext>a</mml:mtext></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry rowsep="1" namest="col6" nameend="col8" align="center" colsep="1">IMPROVE<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mtext>b</mml:mtext></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry rowsep="1" namest="col9" nameend="col11" align="center">STN<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mtext>a</mml:mtext></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry rowsep="1" namest="col12" nameend="col14" align="center">IMPROVE<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mtext>b,c</mml:mtext></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Simulation</oasis:entry>  
         <oasis:entry colname="col2">NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">Frac.</oasis:entry>  
         <oasis:entry colname="col4">NMSE</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6">Frac.</oasis:entry>  
         <oasis:entry colname="col7">NMSE</oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col9">Frac.</oasis:entry>  
         <oasis:entry colname="col10">NMSE</oasis:entry>  
         <oasis:entry colname="col11"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col12">Frac.</oasis:entry>  
         <oasis:entry colname="col13">NMSE</oasis:entry>  
         <oasis:entry colname="col14"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>c</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">parameterization</oasis:entry>  
         <oasis:entry colname="col3">Bias</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6">Bias</oasis:entry>  
         <oasis:entry colname="col7"/>  
         <oasis:entry colname="col8"/>  
         <oasis:entry colname="col9">Bias</oasis:entry>  
         <oasis:entry colname="col10"/>  
         <oasis:entry colname="col11"/>  
         <oasis:entry colname="col12">Bias</oasis:entry>  
         <oasis:entry colname="col13"/>  
         <oasis:entry colname="col14"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">low</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>70</oasis:entry>  
         <oasis:entry colname="col4">88</oasis:entry>  
         <oasis:entry colname="col5">0.03</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>75</oasis:entry>  
         <oasis:entry colname="col7">114</oasis:entry>  
         <oasis:entry colname="col8">0.36</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>81</oasis:entry>  
         <oasis:entry colname="col10">206</oasis:entry>  
         <oasis:entry colname="col11">0.04</oasis:entry>  
         <oasis:entry colname="col12"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>55</oasis:entry>  
         <oasis:entry colname="col13">105</oasis:entry>  
         <oasis:entry colname="col14">0.31</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">SOM-no</oasis:entry>  
         <oasis:entry colname="col2">high</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>61</oasis:entry>  
         <oasis:entry colname="col4">69</oasis:entry>  
         <oasis:entry colname="col5">0.02</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>60</oasis:entry>  
         <oasis:entry colname="col7">85</oasis:entry>  
         <oasis:entry colname="col8">0.41</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>58</oasis:entry>  
         <oasis:entry colname="col10">166</oasis:entry>  
         <oasis:entry colname="col11">0.12</oasis:entry>  
         <oasis:entry colname="col12"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>24</oasis:entry>  
         <oasis:entry colname="col13">84</oasis:entry>  
         <oasis:entry colname="col14">0.48</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">average</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>65</oasis:entry>  
         <oasis:entry colname="col4">78</oasis:entry>  
         <oasis:entry colname="col5">0.02</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>67</oasis:entry>  
         <oasis:entry colname="col7">97</oasis:entry>  
         <oasis:entry colname="col8">0.39</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>68</oasis:entry>  
         <oasis:entry colname="col10">180</oasis:entry>  
         <oasis:entry colname="col11">0.08</oasis:entry>  
         <oasis:entry colname="col12"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>38</oasis:entry>  
         <oasis:entry colname="col13">89</oasis:entry>  
         <oasis:entry colname="col14">0.43</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">low</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>52</oasis:entry>  
         <oasis:entry colname="col4">64</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.21</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>45</oasis:entry>  
         <oasis:entry colname="col7">65</oasis:entry>  
         <oasis:entry colname="col8">0.36</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>26</oasis:entry>  
         <oasis:entry colname="col10">154</oasis:entry>  
         <oasis:entry colname="col11">0.08</oasis:entry>  
         <oasis:entry colname="col12">15</oasis:entry>  
         <oasis:entry colname="col13">85</oasis:entry>  
         <oasis:entry colname="col14">0.15</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">SOM-low</oasis:entry>  
         <oasis:entry colname="col2">high</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>39</oasis:entry>  
         <oasis:entry colname="col4">49</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.29</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>27</oasis:entry>  
         <oasis:entry colname="col7">47</oasis:entry>  
         <oasis:entry colname="col8">0.27</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4</oasis:entry>  
         <oasis:entry colname="col10">171</oasis:entry>  
         <oasis:entry colname="col11">0.07</oasis:entry>  
         <oasis:entry colname="col12">38</oasis:entry>  
         <oasis:entry colname="col13">128</oasis:entry>  
         <oasis:entry colname="col14">0.10</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">average</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>45</oasis:entry>  
         <oasis:entry colname="col4">55</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.25</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>36</oasis:entry>  
         <oasis:entry colname="col7">54</oasis:entry>  
         <oasis:entry colname="col8">0.32</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>14</oasis:entry>  
         <oasis:entry colname="col10">160</oasis:entry>  
         <oasis:entry colname="col11">0.08</oasis:entry>  
         <oasis:entry colname="col12">28</oasis:entry>  
         <oasis:entry colname="col13">105</oasis:entry>  
         <oasis:entry colname="col14">0.12</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">low</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>25</oasis:entry>  
         <oasis:entry colname="col4">51</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.03</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8</oasis:entry>  
         <oasis:entry colname="col7">46</oasis:entry>  
         <oasis:entry colname="col8">0.44</oasis:entry>  
         <oasis:entry colname="col9">26</oasis:entry>  
         <oasis:entry colname="col10">236</oasis:entry>  
         <oasis:entry colname="col11">0.15</oasis:entry>  
         <oasis:entry colname="col12">69</oasis:entry>  
         <oasis:entry colname="col13">189</oasis:entry>  
         <oasis:entry colname="col14">0.40</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">SOM-high</oasis:entry>  
         <oasis:entry colname="col2">high</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>10</oasis:entry>  
         <oasis:entry colname="col4">38</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.08</oasis:entry>  
         <oasis:entry colname="col6">16</oasis:entry>  
         <oasis:entry colname="col7">43</oasis:entry>  
         <oasis:entry colname="col8">0.46</oasis:entry>  
         <oasis:entry colname="col9">45</oasis:entry>  
         <oasis:entry colname="col10">298</oasis:entry>  
         <oasis:entry colname="col11">0.15</oasis:entry>  
         <oasis:entry colname="col12">86</oasis:entry>  
         <oasis:entry colname="col13">295</oasis:entry>  
         <oasis:entry colname="col14">0.25</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">average</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>17</oasis:entry>  
         <oasis:entry colname="col4">43</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.05</oasis:entry>  
         <oasis:entry colname="col6">5</oasis:entry>  
         <oasis:entry colname="col7">42</oasis:entry>  
         <oasis:entry colname="col8">0.46</oasis:entry>  
         <oasis:entry colname="col9">36</oasis:entry>  
         <oasis:entry colname="col10">265</oasis:entry>  
         <oasis:entry colname="col11">0.16</oasis:entry>  
         <oasis:entry colname="col12">79</oasis:entry>  
         <oasis:entry colname="col13">241</oasis:entry>  
         <oasis:entry colname="col14">0.31</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><?xmltex \begin{scaleboxenv}{.95}[.95]?><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mtext>a</mml:mtext></mml:msup></mml:math></inline-formula> Observed [OA] for STN sites estimated as 1.6
([OC]–0.5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mtext>b</mml:mtext></mml:msup></mml:math></inline-formula> Observed [OA] for IMPROVE sites estimated as 2.1 [OC]. 
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mtext>c</mml:mtext></mml:msup></mml:math></inline-formula> Observed [OA] may be biased low by <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 25 % in the SE US summer due to evaporation after sampling (Kim et al.,
2015).</p></table-wrap-foot><?xmltex \end{scaleboxenv}?></table-wrap>

      <p>The simulations can also be compared with observations of the OA-to-<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO concentration ratio (OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO) during the Study of Organic Aerosols at Riverside (SOAR) campaign (Docherty et al.,
2008, 2011), and where <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO indicates the background-corrected CO concentration. Because CO is relatively long-lived,
normalization of the calculated and observed OA to the concurrent
background-corrected CO helps to minimize the impacts of uncertainties in
boundary layer dynamics and accounts for variability in emissions and
transport to some extent (De Gouw and Jimenez, 2009).
The background-corrected CO concentration is calculated as <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>[CO] <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> [CO]–[CO]<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>bgd</mml:mtext></mml:msub></mml:math></inline-formula>. The estimated [CO]<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>bgd</mml:mtext></mml:msub></mml:math></inline-formula>
for the observations is 105 ppb (with a plausible range from 85 to 125 ppb; Hayes et al., 2013). In
contrast, the [CO]<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>bgd</mml:mtext></mml:msub></mml:math></inline-formula> for the model is estimated to be 130 ppb based on
the simulated [CO] over the open ocean west of Los Angeles. The observed
diurnal profile of OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO during SOAR exhibits a distinct peak
around midday, corresponding to the peak in photochemical activity. This
indicates a substantial influence of SOA production on the total OA
concentration (Fig. 5; Docherty et al., 2008). The simulated
OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO diurnal profiles around Riverside for the SOM-high
simulations are most consistent with the observations, exhibiting a distinct
peak around midday that is similar to the observations
(Fig. 5). Unlike the observations, the diurnal
OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO profile for the SOM-no simulation exhibits almost no increase
during midday and the SOM-low simulation exhibits only a slightly larger
daytime increase. The slope of a one-sided linear fit to a graph of the
observed [OA] vs. [CO] during daytime (10:00 to 20:00 LT is 69 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> ppm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 5) when
constrained to go through the assumed [CO]<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>bgd</mml:mtext></mml:msub></mml:math></inline-formula>. This can be compared
with the simulation results, which have constrained slopes of 23.0 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.4, 34.0 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.8 and 55 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> ppm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for
SOM-no, SOM-low and SOM-high, respectively (Fig. 5g–i). Clearly the SOM-high simulations are in best overall agreement with
the SOAR observations. However, the maximum in the simulated OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO
peaks at a smaller value than was observed. The simulated peak also occurs
slightly earlier than the maximum in the observations, which could be due to
discrepancies in the transport to the Riverside site or to too fast SOA
formation in the model. Nonetheless, these results clearly indicate that
accounting for vapor wall losses has the potential to reconcile simulated
SOA diurnal behavior with observations. Alternatively or complementarily,
daytime increases in the OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO ratio from SOA production can be
achieved with the introduction of additional SOA precursor material such as
S/IVOCs (Zhao et al., 2014; Hayes et al., 2015), which are not considered
here. The addition of S/IVOCs would increase the daytime OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO for
all of the simulations. The magnitude of the increase would depend on the
amount of added S/IVOCs and the properties assigned to the S/IVOCs regarding
their SOA formation timescale and yield. Consideration of SOA from S/IVOCs
in the SoCAB using the SOM framework will be the subject of future work.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><caption><p>Bar charts showing the fractional contribution from the various
VOC precursor classes to the total simulated SOA for two locations in SoCAB
(central Los Angeles and Riverside) and two in the eastern US (Atlanta and
the Smoky Mountains). Results are shown for (top) average, (middle)
high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>, low-yield and (bottom) low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>, high-yield
simulations. Each panel shows results from the 14-day average
(left-to-right) SOM-no, SOM-low and SOM-high simulations. The average SOA
concentration (in <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is for each location and simulation
is given in parentheses above each panel.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3041/2016/acp-16-3041-2016-f04.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Simulated and observed diurnal profiles for the OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO
ratio (top panels) at Riverside, CA, during the SOAR-2005 campaign for
<bold>(a)</bold> SOM-no, <bold>(b)</bold> SOM-low and <bold>(c)</bold> SOM-high simulations. For the observations, the
mean (solid orange line) and the 1<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> variability range (grey band)
are shown for [CO]<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>bgd</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.105 ppm, and only mean values are shown for
[CO]<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>bgd</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.085 ppm (short dashed orange line) and [CO]<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>bgd</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.125 ppm (long dashed orange line). For the simulations, box and whisker
plots are shown with the median (red –), mean (blue squares), lower and
upper quartile (boxes), and 9th and 91st percentile (whiskers). The
bottom panels <bold>(e–f)</bold> show scatter plots of [OA] vs. [CO] for both the
ambient measurements (open orange circles) and for the model results (blue
circles) for daytime hours (10:00–20:00 LT). The lines are linear fits where
the <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis intercept has been constrained to go through the assumed
[CO]<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>bgd</mml:mtext></mml:msub></mml:math></inline-formula> (dashed <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> observed; solid <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> model). The derived slopes are
69 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2 (observed), 23.0 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.4 (SOM-no), 34.0 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.8
(SOM-low) and 55 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2 (SOM-high) <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> ppm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
where the uncertainties are fit errors.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3041/2016/acp-16-3041-2016-f05.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <title>SOA Composition</title>
<sec id="Ch1.S3.SS3.SSS1">
  <title>Source/VOC precursor dependence</title>
      <p>Accounting for vapor wall losses leads to regionally specific changes in the
simulated contributions from the different VOC classes (e.g. TRP1, ARO1) to
the SOA burden, as illustrated in Fig. 4 for two
sites in SoCAB (central Los Angeles and Riverside) and two in the eastern US
(Atlanta and the Smoky Mountains). Focusing first on contributions from the
biogenic VOCs, at all locations accounting for vapor wall losses leads to an
increase in the fractional contribution of isoprene SOA, typically at the
expense of terpene and sesquiterpene SOA. This is true for both the low- and
high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> simulations. Recent observations suggest that isoprene SOA
produced via the low-NO IEPOX (isoprene epoxydiol) pathway can be uniquely
identified from analysis of aerosol mass spectrometer measurements when the
relative contribution is sufficiently large (&gt; <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5 %; e.g. Budisulistiorini et al., 2013; Hu et al., 2015). This
observed IEPOX SOA accounts for around 30 % (May) and 40 % (August) of
total SOA or around 20 % (May) and 30 % (August) of total OA in Atlanta
in the summer (Xu et al., 2015a), albeit not during
the same time period as simulated here. IEPOX SOA was also found to account
for 17 % of total OA at a rural site in Alabama in 2013 (Hu et al.,
2015). The SOM-low and SOM-high simulation results for Atlanta are most
consistent with the observations, with a predicted isoprene SOA fraction of
27 and 35 %, respectively, compared to only 17 % for the SOM-no
simulations and where the reported values are for the simulations that use
the low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations since this is the pathway that leads to
IEPOX SOA. The related isoprene OA fractions are 10, 21 and 31 %
for the SOM-no, -low and -high simulations, respectively. (These
isoprene SOA fractions change only marginally for SOM-low and SOM-high
simulations when the high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations are used, to 25 and
37 %, respectively. The SOM-no simulations exhibit somewhat greater
sensitivity to the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterization, with the high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
parameterization giving an SOA fraction of 7 %.)</p>
      <p>In SoCAB, the predicted average isoprene SOA fraction in central LA is
relatively large for the SOM-low (36 %) and SOM-high (47 %) simulations,
compared to the SOM-no simulations (12 %). There is a large difference in
SoCAB between the simulations that use the low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
parameterizations, with the isoprene SOA fractions being much larger with
the high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations (e.g. 58 % for high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> vs.
36 % for low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> for the SOM-high simulations). Measurements at
Pasadena during the 2010 CalNex study did not distinctly identify IEPOX SOA,
which is interpreted as the IEPOX SOA contribution being lower than
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5 % of the OA (Hu et al., 2015). It is possible that
additional isoprene SOA had been formed under higher NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> conditions
(compared to the southeast US) such that it is chemically different from
IEPOX-SOA and was not identified as a uniquely isoprene-derived SOA
component, instead contributing generically to the overall oxygenated OA
pool. The concentration of isoprene SOA from specific high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> pathways
may, however, be limited at higher temperatures, such as found in summertime
Pasadena, due to thermal decomposition of intermediate gas-phase species
(Worton et al., 2013), although it is not clear to what extent this
influenced the CalNex observations or would have affected the model results
had it been explicitly considered. Additionally, it should be kept in mind
that the ambient NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> concentrations in SoCAB have decreased
substantially from 2005 to 2013 (Russell et al., 2012).
Thus, although the CalNex measurements do not provide direct support for
such a large isoprene SOA fraction, they also do not rule it out.</p>
      <p>While the predicted isoprene SOA fraction increased, the predicted terpene
and sesquiterpene SOA fractions decreased in the simulations that accounted
for vapor wall losses. Additionally, the terpene SOA / sesquiterpene SOA ratio
increased at all locations for the SOM-low and SOM-high simulations, in
large part because the sesquiterpene yield is already large and thus
accounting for vapor wall losses has a limited influence on the simulated
sesquiterpene SOA concentrations.</p>
      <p>There are some changes in the anthropogenic fraction of SOA when vapor wall
losses are accounted for. The anthropogenic fraction of SOA is defined here
as the sum of the SOA from long alkanes and aromatics, which are emitted
from combustion of fossil fuels, divided by the sum of the total SOA, which
additionally includes SOA from isoprene, monoterpenes and sesquiterpenes
emitted by trees, plants and other natural sources. The <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup></mml:math></inline-formula>C isotopic
signature of fossil-derived VOCs is different from that of biogenically
derived VOCs, and thus their respective contributions to SOA can be
partially constrained via experimental analysis of the <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup></mml:math></inline-formula>C content of
OA (Zotter et al., 2014). We assume the anthropogenic
fraction is equivalent to the fossil fraction of SOA (termed
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOA,fossil</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. At the two eastern US sites (Atlanta and Smokey Mountains)
the average <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOA,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> increases slightly from 14 % (SOM-no) to
22 % (SOM-low) and 25 % (SOM-high). At the two SoCAB sites (downtown LA
and Riverside) the predicted average <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOA,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> decreases slightly,
from 35 (SOM-no) to 29 % (SOM-low) and 30 % (SOM-high),
respectively. In SoCAB the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOA,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values differ between the low-
and high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations, with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOA,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> typically larger
for the low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations (e.g. 35 % for low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and
25 % for high-NO<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. In the eastern US, the predicted
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOA,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> exhibit a stronger response to vapor wall losses for the
high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterization than the low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterization,
although the absolute values are reasonably similar. Of the anthropogenic
SOA (aromatics <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> alkanes), the high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations indicate an
increasing alkane SOA fraction as vapor wall losses are accounted for in
both regions. In contrast, the low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> parameterizations indicate minor
contributions from alkane SOA for all of the simulations. In general,
chamber SOA yields from aromatic compounds are larger for low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
conditions (Ng et al., 2007a),
which could help to explain these differences.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>14-day averaged O : C atomic ratios for SOA for <bold>(a)</bold> SoCAB and
<bold>(d)</bold> the eastern US for the SOM-no simulations. The difference in O : C between the
SOM-low or SOM-high and SOM-no simulations, termed <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>(O : C), is shown
in panels <bold>(b–c)</bold> for SoCAB and <bold>(e–f)</bold> for the eastern US.</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3041/2016/acp-16-3041-2016-f06.pdf"/>

          </fig>

      <p>The SoCAB <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOA,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values can be compared with estimates of the
fossil fraction of “oxidized organic carbon” (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>OOC,fossil</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from
measurements made during CalNex in Pasadena (Zotter et
al., 2014). It should be noted that while <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOA,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> includes
contributions from both oxygen and carbon mass the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>OOC,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> includes
only the carbon mass. The fossil fraction of secondary organic carbon (SOC)
can be calculated from the simulated SOA concentrations by accounting for
the differences in the O : C atomic ratios of the different SOA types to
facilitate more direct comparison between the simulations and observations.
Specifically, the SOC mass concentration (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>SOC</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is related to the SOA
mass concentration (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for a given SOA type through the relationship:

                  <disp-formula specific-use="align" content-type="numbered"><mml:math display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>SOC</mml:mtext></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:msub><mml:mi>C</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub><mml:mo>×</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>C</mml:mtext></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mtext>MW</mml:mtext><mml:mtext>C</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mtext>MW</mml:mtext><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>C</mml:mtext></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mtext>MW</mml:mtext><mml:mtext>C</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>C</mml:mtext></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mtext>MW</mml:mtext><mml:mtext>C</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>O</mml:mtext></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mtext>MW</mml:mtext><mml:mtext>O</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mtext>H</mml:mtext></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mtext>MW</mml:mtext><mml:mtext>H</mml:mtext></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E4"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">4</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mtext>O</mml:mtext><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>:</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mtext>C</mml:mtext></mml:mfenced><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mn>12</mml:mn></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mtext>H</mml:mtext><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>:</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mtext>C</mml:mtext></mml:mfenced><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              where MW<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>C</mml:mtext></mml:msub></mml:math></inline-formula>, MW<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>O</mml:mtext></mml:msub></mml:math></inline-formula>, MW<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>H</mml:mtext></mml:msub></mml:math></inline-formula> are the molecular weights of carbon, oxygen and
hydrogen atoms, respectively. The O : C and H : C values of the different SOA
types are not constant in the SOM due to the continuous evolution of the
product distribution. However, for a given SOA type the simulated O : C and
H : C values vary over a relatively narrow range
(Cappa et al., 2013) and thus an average
value can be used. The resulting <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOC,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values are compared with
the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOA,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values in Table S2 and are found to be very similar. The
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>OOC,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values were determined from <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup></mml:math></inline-formula>C analysis of particles
collected on filters to allow for determination of the fossil fraction of the
total carbonaceous material coupled with positive matrix factorization to
allow separation of the contributions from the various fossil and non-fossil
POA and SOA sources. The uncertainty in the fossil fraction of total OC was
reported as 9 %; the uncertainty in the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>OOC,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> will be larger.
Zotter et al. (2014) determined the nighttime
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>OOC,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> was smaller than the peak daytime value and that the 24 h
average best-estimate <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>OOC,fossil</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 44 %. This is somewhat larger
than the average predicted <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOC,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (e.g. 31 % for SOM-high). The
difference between the observed <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>OOC,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and predicted
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>F</mml:mi><mml:mtext>SOC,fossil</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> could indicate a role for SOA formed from fossil-derived
S/IVOC species in the atmosphere but which are not considered here.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <title>The oxygen-to-carbon ratio</title>
      <p>The O : C atomic ratios of the SOA have been calculated from the simulated
distributions of compounds in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>C</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mtext>O</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> space; the O : C atomic ratio
is an inherent property of the SOM model and (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> values from box
model simulations using SOM exhibit generally good agreement with
observations (Cappa and Wilson, 2012; Cappa et al., 2013). Few air
quality models attempt to simulate O : C ratios for SOA
(e.g. Murphy et al., 2011), although a dramatic
expansion in observations of O : C ratios for ambient OA has recently occurred
(Ng et al., 2011; Canagaratna et al., 2015; Chen et al., 2015).
Comparison between intensive properties such as O : C, in addition to absolute
OA concentrations, can provide further constraints on the transformation
processes and OA sources in a given region. The simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> in
the SOM-no simulations are generally larger in SoCAB than in the eastern US
(Fig. 6). The simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> from
isoprene and aromatics individually are larger than those from mono- or
sesquiterpenes due, in large part, to the smaller carbon backbone and the
need to add more oxygens to produce sufficiently low volatility species that
partition substantially to the particle phase (Chhabra et al., 2011;
Cappa and Wilson, 2012; Tkacik et al., 2012). Thus, the larger (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula>
in SoCAB results from larger relative contributions from isoprene and
aromatic compounds to the total SOA burden in this region. The (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula>
is also generally larger in regions where SOA concentrations are smaller.
This may reflect some relationship between SOA source and concentration, but
it also reflects the role that continued multi-generational oxidation has on
the SOA composition, since lower concentrations can reflect greater dilution
and overall more aged SOA.</p>
      <p>The (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> for the SOM-low and SOM-high simulations are substantially
larger than that from the SOM-no simulations in both SoCAB and the eastern
US (Fig. 6). This reflects two phenomena: (i) the
increased relative contribution of isoprene to the total simulated SOA
burden in the SOM-low and SOM-high simulations and (ii) differences in the
SOM chemical pathways (i.e. the SOM parameters) that lead to the production
of condensed-phase material between the parameterizations that do/do not
include vapor wall losses. The influence of the latter has been confirmed
through box model simulations, although the exact behavior is both precursor
specific and somewhat dependent on the reaction conditions (e.g. [OH] and
the initial precursor concentration). Overall, the former effect likely
dominates since the difference in simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> between isoprene
and monoterpenes is substantial (Jathar et al., 2015a).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p>14-day averaged O : C atomic ratios for total OA (POA <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> SOA) for
<bold>(a)</bold> SoCAB and <bold>(d)</bold> the eastern US for the SOM-no simulations. The normalized
difference in O : C, <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>(O : C), between the SOM-low or SOM-high and
SOM-no simulations, where <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>(O : C) is defined as
((O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOM-low/high</mml:mtext></mml:msub></mml:math></inline-formula>-(O : C)<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>SOM-no</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo></mml:mrow></mml:math></inline-formula>(O : C)<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>SOM-no</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, is shown in
panels <bold>(b–c)</bold> for SoCAB and <bold>(e–f)</bold> for the eastern US. In all cases, the O : C
for POA was assumed to be 0.2.</p></caption>
            <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3041/2016/acp-16-3041-2016-f07.pdf"/>

          </fig>

      <p>The simulated O : C for the total OA also differs substantially between
simulations (Fig. 7), especially in regions where
the simulated increase in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is largest
(Fig. 2). The simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> in both
the SoCAB and eastern US increases substantially when vapor wall losses are
accounted for. For example, the simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> values at
Riverside were 0.22, 0.3 and 0.42 and at Atlanta were 0.45, 0.65 and 0.85
for SOM-no, SOM-low and SOM-high simulations, respectively. The increase in
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> is mostly driven by an associated increase in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>. The
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> value is a weighted average of the (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> and
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula>, with (O : C)<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mtext>O,SOA</mml:mtext></mml:msub><mml:mo>+</mml:mo></mml:mrow></mml:math></inline-formula>
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mtext>O,POA</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo></mml:mrow></mml:math></inline-formula>(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mtext>C,SOA</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>n</mml:mi><mml:mtext>C,POA</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mtext>O</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>n</mml:mi><mml:mtext>C</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> indicate the
number of oxygen and carbon atoms, respectively, that comprise all SOA types
and POA. For conceptual purposes, this exact expression for (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula>
can be approximated as (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>(O : C)<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula>,
where (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula>
represents the average over the different SOA types. Thus, changes in
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> lead to changes in (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula>, with some additional smaller
changes due to variation in the weighted average (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> between the
various simulations (since each SOA type has a particular O : C range). The
predicted eastern US (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> are generally larger than in SoCAB due
to the larger <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in the eastern US and since (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> is
typically larger than (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula>. For example, the average
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> in Atlanta for the SOM-no simulations was 0.4 whereas it was
0.22 in Riverside.</p>
      <p>The simulated results at Riverside can be compared with bulk, campaign
average (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> values measured during the SOAR campaign using an
Aerodyne high-resolution time-of-flight aerosol mass spectrometer (HR-AMS),
which determines (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> with an absolute uncertainty of <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>30 % but with very high precision (Docherty et al., 2008; Dzepina et
al., 2009). Values reported here have been corrected according to
Canagaratna et al. (2015). The
campaign-average observed (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> was <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.45. The
SOM-high (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> is in very good agreement with the observations,
whereas (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> is too small for both SOM-no and SOM-low. This good
correspondence is, of course, sensitive to the assumed (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula>, here
0.2 based on (Ng et al., 2011). If a smaller
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula> had been assumed, then either a greater amount of SOA would be
required or the simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>SOA</mml:mtext></mml:msub></mml:math></inline-formula> would need to be larger to match the
SOAR measurements. Docherty et al. (2011) determined there were three POA types during SOAR, with a
weighted-average-corrected O : C <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.095, suggesting that the assumed 0.2 is
too large. In contrast, Hayes et al. (2013) determined a weighted-average-corrected O : C <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.25 for the three POA types identified at Pasadena during
CalNex. It has been suggested that at least some of the difference in the
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula> between SOAR and CalNex results from greater heterogeneous
ageing of the Pasadena POA. Regardless of the exact (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula>, a strong
improvement in the model-measurement agreement when vapor wall losses are
accounted for is evident. Of additional consideration is the diurnal
dependence of the (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula>. The observed (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> exhibited a
distinct diurnal dependence, with low values at night, a minimum at
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 7:00 LT and maximum values around midday
(Fig. 8). The simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> diurnal
profile for the SOM-high simulations agrees reasonably well with the SOAR
observations in terms of both the magnitude of the day–night difference and
the absolute (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> (Fig. 8). In
contrast, both the SOM-no and SOM-low exhibit only minor variations with
time-of-day due to the controlling influence of (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula>.</p>
      <p>The simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> values in the eastern US can also be compared
with recent observations, with the caveat that in this case the measurements
were not made over the same time-period as the simulations were run.
Nonetheless, measurements made in summer and winter of 2012 and 2013 at
various locations in Alabama and Georgia indicate the O : C values for total
OA were relatively constant, around 0.6–0.7, although it should be noted
that these values were estimated from measurements made using an Aerodyne
aerosol chemical speciation monitor, which increases the uncertainty
(Xu et al., 2015b). Measurements made around the
southeast US using an HR-AMS onboard the NASA DC8 as part of the SEAC4RS
field study indicate the average (O : C)<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.8 when the plane was
flying below 1 km (SEAC4RS, 2014). As noted above, the simulated
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> around Atlanta was 0.45 for SOM-no, increasing to
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.65 for SOM-low and <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.85 for SOM-high. As
with the SoCAB comparison, the general level of agreement between the
observed and simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>tot</mml:mtext></mml:msub></mml:math></inline-formula> was improved when vapor wall losses
were accounted for.</p>
      <p>The above simulations included SOA only from VOCs, neglecting contributions
from S/IVOCs including oxidation of semi-volatile POA vapors. S/IVOCs and
semi-volatile POA vapors are likely <inline-formula><mml:math display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn>14</mml:mn></mml:msub></mml:math></inline-formula> carbon species (Jathar
et al., 2014; Zhao et al., 2014). As such, little added oxygen is required
to produce low-volatility species that will form SOA. Since these species
also have relatively large number of carbon atoms, the O : C of the SOA formed
from them will be relatively small, most likely with
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>S/IVOC</mml:mtext></mml:msub></mml:math></inline-formula> &lt; 0.2 in the absence of strong heterogeneous oxidation (Cappa and
Wilson, 2012; Tkacik et al., 2012); note that this range is lower than what
was assumed for the non-volatile POA here. Consequently, had S/IVOCs been
included in the simulations the (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> would have likely decreased.
The magnitude of the decrease would depend on the exact extent to which the
S/IVOCs contributed to the overall SOA burden, the extent to which the
simulated POA decreased (due to the semi-volatile treatment), and on the
simulated (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>S/IVOC</mml:mtext></mml:msub></mml:math></inline-formula>. In the limit that SOA from S/IVOCs dominates the
SOA budget, very little variation in the (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> ratio with time of
day would have likely been predicted because (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>POA</mml:mtext></mml:msub></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 
(O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>S/IVOC</mml:mtext></mml:msub></mml:math></inline-formula>. Additionally, the simulated daytime (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> values
would have likely been close to 0.2. A lack of diurnal variability and a
small (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> would both be inconsistent with the SOAR observations.
Consequently, this implies that accounting for vapor wall losses has a
stronger potential to allow for simultaneous reconciliation of the diurnal
behavior of both the simulated OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO and (O : C)<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mtext>total</mml:mtext></mml:msub></mml:math></inline-formula> with
observations than does consideration of oxidation of S/IVOCs alone. This is
not to say that S/IVOC contributions to the SOA and total OA burden are not
important, only that it seems unlikely that they could dominate the SOA
budget. Ultimately, it seems likely that consideration of both vapor wall
losses (as done here) and of SOA from S/IVOCs will be necessary to fully
close the model–measurement gap.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p>Simulated and observed diurnal profiles for the total OA O : C
<bold>(a, b, c)</bold> and H : C <bold>(d, e, f)</bold> atomic ratios at Riverside,
CA,
during the SOAR-2005 campaign for <bold>(a, d)</bold> SOM-no, <bold>(b, e)</bold> SOM-low and <bold>(c, f)</bold> SOM-high simulations.
For the observations, the mean (orange line) and the
1<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> variability range (dark grey band) are shown along with bands
indicating the measurement uncertainty (light grey band), taken as <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>28 % for O : C and 13 % for H : C
(Canagaratna et al., 2015).
Observed values have been corrected according to
Canagaratna et al. (2015). For
the simulations, box and whisker plots are shown with the median (red –),
lower and upper quartile (boxes), and 9th and 91st percentile
(whiskers). For reference, the assumed O : C for POA was 0.2 and for H : C was
2.0.</p></caption>
            <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://acp.copernicus.org/articles/16/3041/2016/acp-16-3041-2016-f08.pdf"/>

          </fig>

</sec>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusions</title>
      <p>The influence of chamber vapor wall losses on simulated SOA concentrations
and properties has been assessed. The statistical oxidation model was used
to parameterize SOA formation from laboratory chamber experiments both with
and without accounting for vapor wall losses using data from experiments
conducted under both high-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and low-NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> conditions. “Low” and
a “high” vapor wall-loss cases were considered in addition to the “no”
vapor wall-loss case. The best-fit SOM parameters under these different
conditions were used as input to SOA simulations in the 3-D UCD/CIT regional
air quality model, in which SOM has been recently implemented
(Jathar et al., 2015a). Simulations were run for southern
California and for the eastern US. Explicit accounting for vapor wall losses
led to increases in simulated SOA concentrations, by a factor of
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2–5 for the “low” simulations and <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5–10 for
the “high” simulations. The magnitude of the increase was inversely
related to the simulated absolute SOA concentration. This suggests that the
extent to which SOA concentrations are underpredicted may be greater in more
remote regions.</p>
      <p>This increase in simulated SOA when vapor wall losses are accounted for
leads to a substantial increase in the simulated SOA fraction of total OA.
This is especially seen in SoCAB where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is very small for the base
model but &gt; 50 % for the simulations that account for vapor
wall losses. The simulated <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mtext>SOA</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in SoCAB is found to agree reasonably
well with observations when vapor wall losses are accounted for. Comparison
of the OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO from the SoCAB simulations with observations form the
SOAR campaign (Docherty et al., 2008) indicate
that accounting for vapor wall losses leads to substantially improved
agreement in terms of the diurnal behavior, in particular the magnitude of
the daytime increase in OA <inline-formula><mml:math display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Δ</mml:mi></mml:math></inline-formula>CO. Accounting for vapor wall losses
also leads to location-specific changes in the major contributing VOC
precursors to the SOA burden. In general, accounting for vapor wall losses
leads to an increase in the predicted relative contribution of isoprene SOA
and a decrease in the relative contribution of monoterpene and sesquiterpene
SOA. The relative contribution of total anthropogenic VOCs to SOA is
reasonably insensitive to vapor wall losses, especially in SoCAB, although
the apportionment between aromatic VOCs and alkanes does vary with vapor
wall losses. The simulated anthropogenic SOA fraction is, however, somewhat
smaller than suggested by <inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>14</mml:mn></mml:msup></mml:math></inline-formula>C observations during CalNex
(Zotter et al., 2014). In general, the simulated O : C
atomic ratio of the SOA increased for the low and high vapor wall-loss
simulations, compared to the base case. The simulated O : C of the total OA
(SOA <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula> POA) in both SoCAB and the eastern US are in better agreement with
observations when vapor wall losses are accounted for.</p>
      <p>Overall, the generally improved model performance when vapor wall losses are
accounted for – in terms of both absolute and relative concentrations and in
terms of SOA properties – suggests that accounting for this chamber effect
in atmospheric simulations of SOA is important, although certainly requiring
further examination. Our results qualitatively agree with other recent
efforts to assess the influence of vapor wall losses on ambient SOA
concentrations (Baker et al., 2015; Hayes et al., 2015), but as our
accounting for vapor wall loss is inherent in the SOA parameterization the
simulations here serve to provide a more robust assessment. The results
presented here additionally suggest that there may be no need to invoke ad hoc
“ageing” schemes for aromatics (Tsimpidi et al.,
2010) to achieve increases in simulated SOA concentrations in urban
environments. Further, these results suggest that the contribution of
S/IVOCs to urban SOA might be somewhat limited, albeit still important,
although this issue certainly requires further investigation.</p>
</sec>

      
      </body>
    <back><app-group>
        <supplementary-material position="anchor"><p><bold>The Supplement related to this article is available online at <inline-supplementary-material xlink:href="http://dx.doi.org/10.5194/acp-16-3041-2016-supplement" xlink:title="pdf">doi:10.5194/acp-16-3041-2016-supplement</inline-supplementary-material>.</bold></p></supplementary-material>
        </app-group><notes notes-type="authorcontribution">

      <p>The manuscript was written through contributions of all authors. Christopher D. Cappa, Shantanu H. Jathar,
Michael J. Kleeman, John H. Seinfeld and Anthony S. Wexler designed the project. Shantanu H. Jathar and Michael J. Kleeman carried out the
simulations. Christopher D. Cappa determined model parameters using laboratory data collected
by John H. Seinfeld. Kenneth S. Docherty and Jose L. Jimenez collected and processed the SOAR data. All authors have
given approval to the final version of the manuscript.</p>
  </notes><ack><title>Acknowledgements</title><p>The authors thank Pedro Campuzano-Jost for the SEAC4RS data. This study was
funded by the California Air Resources Board, contract 12-312 and NOAA grant
NA13OAR4310058. Jose L. Jimenez was supported by CARB 11-305 and EPA STAR 83587701-0.
This manuscript has not been reviewed by the funding agencies and no
endorsement should be inferred.
<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: K. Lehtinen</p></ack><ref-list>
    <title>References</title>

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  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Simulating secondary organic aerosol in a regional air quality  model using
the statistical oxidation model –  Part 2: Assessing the influence of vapor wall
losses</article-title-html>
<abstract-html><p class="p">The influence of losses of organic vapors to chamber walls during secondary
organic aerosol (SOA) formation experiments has recently been established.
Here, the influence of such losses on simulated ambient SOA concentrations
and properties is assessed in the University of California at Davis / California Institute of Technology (UCD/CIT) regional air quality model using
the statistical oxidation model (SOM) for SOA. The SOM was fit to laboratory
chamber data both with and without accounting for vapor wall losses
following the approach of Zhang et al. (2014). Two
vapor wall-loss scenarios are considered when fitting of SOM to chamber data
to determine best-fit SOM parameters, one with “low” and one with “high”
vapor wall-loss rates to approximately account for the current range of
uncertainty in this process. Simulations were run using these different
parameterizations (scenarios) for both the southern California/South Coast
Air Basin (SoCAB) and the eastern United States (US). Accounting for vapor
wall losses leads to substantial increases in the simulated SOA
concentrations from volatile organic compounds (VOCs) in both domains, by factors of  ∼  2–5
for the low and  ∼  5–10 for the high scenarios. The magnitude of
the increase scales approximately inversely with the absolute SOA
concentration of the no loss scenario. In SoCAB, the predicted SOA fraction
of total organic aerosol (OA) increases from  ∼  0.2 (no) to  ∼  0.5
(low) and to  ∼  0.7 (high), with the high vapor wall-loss
simulations providing best general agreement with observations. In the
eastern US, the SOA fraction is large in all cases but increases further
when vapor wall losses are accounted for. The total OA ∕ ΔCO ratio
captures the influence of dilution on SOA concentrations. The simulated
OA ∕ ΔCO in SoCAB (specifically, at Riverside, CA) is found to
increase substantially during the day only for the high vapor wall-loss
scenario, which is consistent with observations and indicative of
photochemical production of SOA. Simulated O : C atomic ratios for both SOA
and for total OA increase when vapor wall losses are accounted for, while
simulated H : C atomic ratios decrease. The agreement between simulations and
observations of both the absolute values and the diurnal profile of the O : C
and H : C atomic ratios for total OA was greatly improved when vapor
wall-losses were accounted for. These results overall demonstrate that vapor
wall losses in chambers have the potential to exert a large influence on
simulated ambient SOA concentrations, and further suggest that accounting
for such effects in models can explain a number of different observations
and model–measurement discrepancies.</p></abstract-html>
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