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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-15-5145-2015</article-id><title-group><article-title>Relative humidity-dependent viscosities of isoprene-derived
secondary organic material and atmospheric implications for
isoprene-dominant forests</article-title>
      </title-group><?xmltex \runningtitle{Relative humidity-dependent viscosities}?><?xmltex \runningauthor{M.~Song et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Song</surname><given-names>M.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Liu</surname><given-names>P. F.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7280-9720</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Hanna</surname><given-names>S. J.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Li</surname><given-names>Y. J.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2 aff3">
          <name><surname>Martin</surname><given-names>S. T.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Bertram</surname><given-names>A. K.</given-names></name>
          <email>bertram@chem.ubc.ca</email>
        <ext-link>https://orcid.org/0000-0002-5621-2323</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Department of Chemistry, University of British Columbia, Vancouver, BC V6T 1Z1, Canada</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Department of Earth and Planetary Sciences, Harvard University, Cambridge, Massachusetts 02138, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">A. K. Bertram (bertram@chem.ubc.ca)</corresp></author-notes><pub-date><day>8</day><month>May</month><year>2015</year></pub-date>
      
      <volume>15</volume>
      <issue>9</issue>
      <fpage>5145</fpage><lpage>5159</lpage>
      <history>
        <date date-type="received"><day>10</day><month>December</month><year>2014</year></date>
           <date date-type="rev-request"><day>14</day><month>January</month><year>2015</year></date>
           <date date-type="rev-recd"><day>10</day><month>April</month><year>2015</year></date>
           <date date-type="accepted"><day>21</day><month>April</month><year>2015</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015.html">This article is available from https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015.html</self-uri>
<self-uri xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015.pdf</self-uri>


      <abstract>
    <p>Oxidation of isoprene is an important source of secondary organic material
(SOM) in atmospheric particles, especially in areas such as the Amazon Basin.
Information on the viscosities, diffusion rates, and mixing times within
isoprene-derived SOM is needed for accurate predictions of air quality,
visibility, and climate. Currently, however, this information is not
available. Using a bead-mobility technique and a poke-flow technique combined
with fluid simulations, the relative humidity (RH)-dependent viscosities of
SOM produced from isoprene photo-oxidation were quantified for
20–60 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m particles at 295 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 K. From 84.5 to 0 % RH,
the viscosities for isoprene-derived SOM varied from
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula> Pa s,
implying that isoprene-derived SOM ranges from a liquid to a semisolid over
this RH range. These viscosities correspond to diffusion coefficients of
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>14</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for large organic
molecules that follow the Stokes–Einstein relation. Based on the diffusion
coefficients, the mixing time of large organic molecules within 200 nm
isoprene-derived SOM particles ranges from approximately 0.1 h to less than
1 s. To illustrate the atmospheric implications of this study's results, the
Amazon Basin is used as a case study for an isoprene-dominant forest.
Considering the RH and temperature range observed in the Amazon Basin and
with some assumptions about the dominant chemical compositions of SOM
particles in the region, it is likely that SOM particles in this area are
liquid and reach equilibrium with large gas-phase organic molecules on short
time scales, less than or equal to approximately 0.1 h.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Vegetation and urban environments emit large quantities of volatile organic
compounds (e.g., isoprene, <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene, and toluene) into the atmosphere
(Guenther et al., 1995; Geron et al., 2000; Hakola et al., 2000; Henze et
al., 2008). In the atmosphere these volatile organic compounds can be
oxidized by OH radicals, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> radicals, and ozone, ultimately
contributing to the burden of secondary organic material (SOM) in atmospheric
particles (Hallquist et al., 2009). SOM can account for 20–80 % of the
mass of atmospheric aerosol particles depending on the location (Zhang et
al., 2007; Jimenez et al., 2009). Particles containing SOM are important
since they can affect the Earth's energy budget directly by scattering and/or
absorbing solar radiation and indirectly by serving as nuclei for cloud
formation (IPCC, 2013). Moreover, they can influence air quality and human
health (Jang et al., 2006; Baltensperger et al., 2008).</p>
      <p>Recently, the phase (i.e., solid vs. semisolid vs. liquid), viscosity, and
molecular diffusion within SOM have been an area of focus in the atmospheric
community. This is because knowledge of these physical properties is needed
for modeling the environmental impacts of SOM particles (Koop et al., 2011;
Pfrang et al., 2011; Riipinen et al., 2011, 2012; Shiraiwa et al., 2011, 2013; Perraud
et al., 2012; Shiraiwa and Seinfeld, 2012; Zelenyuk et al., 2012; Zhou et al., 2013). For example, when SOM
particles are solid they may participate in heterogeneous ice nucleation in
the atmosphere (Murray et al., 2010; Wang et al., 2012). As another example,
researchers have shown that predictions of ultrafine particle number
concentrations and size distributions depend on the diffusion rates of
organics within SOM particles (Riipinen et al., 2011). In addition,
researchers have shown that predictions of total SOM mass concentrations in
urban environments are dependent on the diffusion rates of organics in SOM
(Shiraiwa and Seinfeld, 2012). Moreover, it has been demonstrated that
long-range transport of polycyclic aromatic hydrocarbons can depend on
diffusion rates in a particle (Zelenyuk et al., 2012; Zhou et al., 2013).
Furthermore, when viscosities are high in particles containing SOM material,
they can inhibit the efflorescence of crystalline salts by affecting
nucleation rates and/or crystal growth rates (Bodsworth et al., 2010; Song
et al., 2013).</p>
      <p>The phase, viscosity, and molecular diffusion rate within SOM are closely
related properties (Koop et al., 2011; Shiraiwa et al., 2011). An amorphous
solid is defined as a material having a viscosity greater than 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>12</mml:mn></mml:msup></mml:math></inline-formula> Pa s, a semisolid is defined as a material having a viscosity
between 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> and 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>12</mml:mn></mml:msup></mml:math></inline-formula> Pa s, and a liquid
is defined as a material having a viscosity less than 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> Pa s. Viscosities and molecular diffusion rates are related with an increase in
viscosity leading to a decrease in molecular diffusion rates. For the
transport of large organic molecules in SOM, molecular diffusion rates may
be related to viscosity through the Stokes–Einstein equation (Koop et al.,
2011).</p>
      <p>An important biogenic source of SOM is the oxidation of <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene.
Recently, there has been a significant amount of research on the phase,
viscosity, and diffusion rates in SOM generated from the oxidation of <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene (Virtanen et al., 2010; Cappa and Wilson, 2011; Perraud et al.,
2012; Saukko et al., 2012; Abramson et al., 2013; Renbaum-Wolff et al.,
2013a; Robinson et al., 2013; Kidd et al., 2014; Pajunoja et al., 2014; Wang
et al., 2014). These different studies have shown or inferred that
viscosities can be higher than 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> Pa s and diffusion rates of large
organic molecules can be slower than <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
in SOM particles generated from <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene oxidation at low relative
humidity (RH), although there are still disagreements in the exact values of
the viscosities and diffusion rates in these particles.</p>
      <p>Another important biogenic source of SOM in the atmosphere is photo-oxidation
of isoprene. In the southeast USA during the summer months in 2006 and 2011,
up to 40 % of measured PM<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn>2.5</mml:mn></mml:msub></mml:math></inline-formula> organic carbon was attributed to
isoprene-derived SOM (Offenberg et al., 2011; Budisulistiorini et al., 2013).
In central East China during the Mount Tai Experiment 2006 campaign (MTX2006)
in early summer, isoprene-derived SOM was 7 times greater than
monoterpene-derived SOM (Fu et al., 2010). In the maritime tropical forest in
Danum Valley, Borneo, Malaysia, during summer 2008, isoprene-derived SOM
accounted for as much as half of the mass concentrations of total submicron
organic particles (Robinson et al., 2011). In the wet season of 2008 during
the Amazonian Aerosol Characterization Experiment (AMAZE-08), mass spectra of
submicron organic particles were consistent with reference spectra of SOM
generated from isoprene and terpene oxidation (Chen et al., 2009; Pöschl
et al., 2010; Pöhlker et al., 2012). Speciation studies using
chromatography have also illustrated that isoprene oxidation is a major
source of SOM in the Amazon Basin during clean conditions (Claeys et al.,
2004). A recent study using positive matrix factorization of aerosol mass
spectra has also shown that isoprene-derived SOM is an important component of
submicron particles in the Amazon Basin (Chen et al., 2015).</p>
      <p>Although isoprene is a major source of SOM in some regions of the atmosphere,
such as the Amazon Basin, there have only been a few studies that have
investigated the phase (i.e., liquid vs. semisolid or solid) of
isoprene-derived SOM (Saukko et al., 2012; Bateman et al., 2014). In
addition, there has only been one study that has addressed the viscosity in
isoprene-derived SOM (Bateman et al., 2014). In the current study we focus on
the viscosities and diffusion rates of organic molecules as a function of RH
in SOM generated from photo-oxidation of isoprene. Studies as a function of
RH are needed since as the RH varies in the atmosphere SOM particles can take
up water, which can change the viscosities and diffusion rates in the
particles (Koop et al., 2011; Shiraiwa et al., 2011; Power et al., 2013;
Renbaum-Wolff et al., 2013a; Shiraiwa et al., 2013; Zhou et al., 2013). Our
approach involves measuring the viscosity of isoprene-derived SOM and then
relating the viscosity to diffusion rates of organic molecules in the SOM
using the Stokes–Einstein relationship. Based on their laboratory
experiments studying the RH dependence of particle rebound for different
types of SOM, the results of Bateman et al. (2014) appear to explain why
organic particles present in terpene-dominant conditions of a boreal forest
at low RH are solid whereas organic particles for isoprene-dominant tropical
forests at high RH are liquid. In addition to determining viscosities and
diffusion rates, we also use the new data to assess whether SOM in the Amazon
Basin during clean conditions will rapidly reach equilibrium with large
gas-phase organic molecules under RH values typically encountered in the
region.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methods</title>
      <p>Primary SOM particles having diameters &lt; 5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m were produced by
photo-oxidation of isoprene compounds in an oxidation flow reactor (OFR) and
then collected onto hydrophobic substrates (Sect. 2.1). The primary
particles were collected (Sect. 2.1) and converted into larger particles
having diameters between 20 and 60 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m (Sect. 2.2). The viscosities of
the supermicron-sized particles were determined at 295 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 K both
with the bead-mobility technique (Sect. 2.3) and the poke-flow technique
(Sect. 2.4).</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Experimental conditions for production of isoprene-derived SOM
particles using the oxidation flow reactor. Particles were deposited on
substrates using an electrostatic precipitator. SOMs from isoprene samples 1,
2, and 3 were collected on Teflon substrates for the bead-mobility
experiments, and SOMs from isoprene samples 4, 5, and 6 were collected on
salinized substrates for the poke-flow experiments.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="6">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">SOM</oasis:entry>  
         <oasis:entry colname="col2">Isoprene</oasis:entry>  
         <oasis:entry colname="col3">Ozone</oasis:entry>  
         <oasis:entry colname="col4">SOM mass</oasis:entry>  
         <oasis:entry colname="col5">OFR</oasis:entry>  
         <oasis:entry colname="col6">Collection</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">sample</oasis:entry>  
         <oasis:entry colname="col2">conc.</oasis:entry>  
         <oasis:entry colname="col3">conc.</oasis:entry>  
         <oasis:entry colname="col4">conc.</oasis:entry>  
         <oasis:entry colname="col5">flow rate</oasis:entry>  
         <oasis:entry colname="col6">time</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">(ppm)</oasis:entry>  
         <oasis:entry colname="col3">(ppm)</oasis:entry>  
         <oasis:entry colname="col4">(<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col5">(L m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col6">(day)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Isoprene 1</oasis:entry>  
         <oasis:entry colname="col2">7 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col3">10 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col4">300–400</oasis:entry>  
         <oasis:entry colname="col5">9.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1</oasis:entry>  
         <oasis:entry colname="col6">2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Isoprene 2</oasis:entry>  
         <oasis:entry colname="col2">7 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col3">13 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col4">500–1000</oasis:entry>  
         <oasis:entry colname="col5">7.0 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1</oasis:entry>  
         <oasis:entry colname="col6">7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Isoprene 3</oasis:entry>  
         <oasis:entry colname="col2">7 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col3">13 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col4">500–1000</oasis:entry>  
         <oasis:entry colname="col5">7.0 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1</oasis:entry>  
         <oasis:entry colname="col6">7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Isoprene 4</oasis:entry>  
         <oasis:entry colname="col2">4 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col3">10 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col4">100–200</oasis:entry>  
         <oasis:entry colname="col5">9.5 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1</oasis:entry>  
         <oasis:entry colname="col6">3</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Isoprene 5</oasis:entry>  
         <oasis:entry colname="col2">7 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col3">13 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col4">500–1000</oasis:entry>  
         <oasis:entry colname="col5">7.0 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1</oasis:entry>  
         <oasis:entry colname="col6">4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Isoprene 6</oasis:entry>  
         <oasis:entry colname="col2">7 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col3">13 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2</oasis:entry>  
         <oasis:entry colname="col4">500–1000</oasis:entry>  
         <oasis:entry colname="col5">7.0 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1</oasis:entry>  
         <oasis:entry colname="col6">4</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \hack{\newpage}?>
<sec id="Ch1.S2.SS1">
  <title>Production of particles consisting of secondary organic material
on hydrophobic surfaces</title>
      <p>Particles consisting of SOM were produced by the photo-oxidation of isoprene
compounds in an OFR (Kang et al., 2007). The procedures were described in
detail in Liu et al. (2013, 2015). Table 1 lists the experimental conditions
used in this study. The volume of the OFR was 13.3 L and the OFR was
operated at a flow of 7.0 and 9.5 L min<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, resulting in residence
times of 114 and 84 s, respectively. The temperature used in the OFR
experiments was 293 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2 K. RH in the reactor was maintained at
13 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 3 % during particle generation. For injection of isoprene
vapor into the OFR, 2 mL of liquid isoprene (Sigma-Aldrich, 99 %) was
placed in an upright Teflon tube with the lower end sealed and the upper end
connected to a T-fitting. The fitting was flushed by purified air, thereby
producing a gas flow containing isoprene vapor. The injected isoprene
concentration was 4–7 ppm. Ozone was produced external to the flow reactor
by irradiating pure air with the ultraviolet emission from a mercury-vapor
lamp (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 185 nm). The injected ozone concentration was
10–13 ppm. Hydroxyl radicals were produced inside the OFR by the following
photochemical reactions:
            <disp-formula id="R1" content-type="numbered reaction"><mml:math display="block"><mml:mrow><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mi>h</mml:mi><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>→</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><mml:msup><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msup><mml:mrow class="chem"><mml:mi mathvariant="normal">D</mml:mi></mml:mrow><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          <?xmltex \hack{\vspace*{-0.5cm}}?>
            <disp-formula id="R2" content-type="numbered reaction"><mml:math display="block"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><mml:msup><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msup><mml:mrow class="chem"><mml:mi mathvariant="normal">D</mml:mi></mml:mrow><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">H</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mrow class="chem"><mml:mi mathvariant="normal">O</mml:mi></mml:mrow><mml:mo>→</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mrow class="chem"><mml:mi mathvariant="normal">OH</mml:mi></mml:mrow><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p>Although the OH concentration was not measured in the OFR in this study, an
OH concentration in the OFR in the range of 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">8</mml:mn></mml:msup></mml:math></inline-formula> to
2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula> molec cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> was expected based on previous
experiments under similar conditions (Lambe et al., 2011a). This OH
concentration corresponds to a lifetime of isoprene between 0.5 and 50 s. For comparison, the O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> concentrations used in these
experiments correspond to a lifetime of isoprene of approximately 3.6 min.
The OH concentration in the OFR was adjusted by changing the power of the UV
lamps as described in Lambe et al. (2011a). For the experiments in this
study, the lamp power was always full; therefore, the OH concentration in
this study should have been close to 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula> molec cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
and the OH pathway should have dominated the oxidation of isoprene.</p>
      <p>Based on the flow tube residence times and the expected OH concentrations,
OH exposures were expected to be in the range of 2.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula> to
1.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>12</mml:mn></mml:msup></mml:math></inline-formula> molec cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. When one assumes an average
atmospheric OH concentration of 1.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:math></inline-formula> molec cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, this
range of exposures is equivalent to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.15 to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 15 days of atmospheric oxidation by OH (Lambe et al., 2011a).</p>
      <p>The concentration of the major oxidants (O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, OH, and HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) in the
OFR is higher than in environmental chambers or the atmosphere, but the
ratios of O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> to OH and OH to HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> are similar to those encountered
in the atmosphere and in environmental chambers. As a result, the OFR is
used to simulate oxidation processes in the atmosphere and environmental
chambers. Recent measurements with an aerosol mass spectrometer have shown
that the composition of isoprene-derived SOM produced with an OFR is the
same, within the uncertainty of the measurements, as isoprene-derived SOM
produced with an environmental chamber (Lambe et al., 2015).</p>
      <p>In the current study, the O : C ratio of the isoprene-derived SOM was not
measured. However, in previous studies using the Harvard OFR, an O : C value
of 0.82 for isoprene-derived SOM was measured using lower concentrations of
isoprene (700 ppb). In these previous studies the O : C was calculated using
the explicit approach described by Chen et al. (2011). In addition, the
average O : C values of isoprene-derived SOM was found to be 0.64 to 0.79 by
Chhabra et al. (2010) and 0.75 to 0.88 by Chen et al. (2011) in
environmental chamber studies and 0.64 to 1.1 by Lambe et al. (2011b, 2015)
in explicit studies using a similar OFR. The O : C values reported here for
Chhabra et al. (2010) and Lambe et al. (2011b) have been scaled up by a
factor of 1.27 as suggested by Canagaratna et al. (2015). Based on this
information, we estimate that the O : C of isoprene-derived SOM in the current
experiments was in the range of 0.64 to 1.1.</p>
      <p>Particles consisting of SOM produced from the photo-oxidation of isoprene
were collected onto hydrophobic substrates using an electrostatic
precipitator (TSI 3089, USA) connected to the outflow of the OFR. Shown in
Fig. 1a is an example of an image of particles collected on a hydrophobic
substrate using this process. Teflon substrates were used as the hydrophobic
substrates for the bead-mobility experiments (see Sect. 2.3). Glass slides
coated with trichloro(1<inline-formula><mml:math display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula>,1<inline-formula><mml:math display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula>,2<inline-formula><mml:math display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula>,2<inline-formula><mml:math display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula>-perfluorooctyl)silane (Sigma-Aldrich) were
used as hydrophobic substrates for the poke-flow experiments (see Sect. 2.4).
The method of coating glass slides with a silane is described in Knopf (2003).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <?xmltex \opttitle{Production of 20--60\,{$\mathrm{µ}$}m particles}?><title>Production of 20–60 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m particles</title>
      <p>Particles of 20–60 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m were required to perform bead-mobility and
poke-flow experiments (see Sect. 2.3 and 2.4). To make the appropriate
particle sizes for these experiments, the hydrophobic substrates containing
particles collected from the OFR were placed in a RH-controlled flow cell
coupled to a reflectance microscope (Zeiss Axiotech, magnification of
50 times) (Pant et al., 2006; Bertram et al., 2011). The RH in this
flow cell was then increased to over 100 %, which resulted in growth of
the SOM particles by water uptake. The RH was then maintained over 100 %
for 30–60 min to grow and coagulate the SOM particles. After the growth
and coagulation process, the RH was decreased to 80–90 % to evaporate
the water. The activation, growth, and coagulation processes resulted in
particles having diameters of 20–60 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m (see Fig. 1b). This method
of producing 20–60 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m particles was introduced by Renbaum-Wolff et
al. (2015).</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Bead-mobility experiments</title>
      <p>The bead-mobility technique has been described in detail by Renbaum-Wolff et
al. (2013b). Insoluble melamine beads (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m in
diameter, Sigma-Aldrich, 86296) were incorporated into the
supermicron SOM particles deposited on a hydrophobic substrate by nebulizing
a suspension of the melamine beads in water over the supermicron SOM
particles. The hydrophobic substrate with the SOM particles was then placed
in a flow cell coupled to a light-transmitting microscope (Zeiss Axio
Observer, magnification 40 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula>). Once the supermicron particles were
located in the flow cell, a continuous flow of N<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>/H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O gas
(<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1200 sccm) was passed over the supermicron particles. By
adjusting the ratio of N<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O in the flow, the RH in the cell
was controlled. The RH in the flow cell was measured using a hygrometer with
a chilled mirror sensor (General Eastern, Canada), which was calibrated by
observing the deliquescence RH for pure ammonium sulfate particles (80.0 % RH at 293 K; Martin, 2000).
The uncertainty of the RH was <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula>0.5 %.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p>Images of isoprene-derived SOM particles on a hydrophobic
substrate. <bold>(a)</bold> SOM particles after collection from the OFR and <bold>(b)</bold> SOM
particles after being exposed to a cycle droplet growth, coagulation, and
evaporation (see text for further details). The samples shown here were
produced in the OFR with a concentration of 500–1000 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (isoprene sample 3 in Table 1). Particles in <bold>(a)</bold> and <bold>(b)</bold> were
exposed to 0 and 84 % RH, respectively, when the images were recorded.
The size of the scale bar is 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015-f01.pdf"/>

        </fig>

      <p>The continuous flow of N<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> / H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O gas caused a shear stress on the
surfaces of the SOM particles and resulted in internal circulations within
the SOM particles. These internal circulations were quantified by monitoring
the movement of the beads within the SOM particles with the optical
microscope. Images of the beads within the SOM particles were recorded with
a CCD camera every 0.2 s–10 min depending on the velocity of the beads.
Typically one to seven beads within a particle were observed over 50–100
frames. Within the same particle, bead speeds varied by a factor of 2–3
depending on the location within the particle. Shown in Fig. 2 are examples
of optical images of an isoprene-derived SOM particle at 80 % RH recorded
during a typical bead-mobility experiment. Three beads that were monitored
during this experiment are marked with arrows. Also included are the <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> coordinates of the beads recorded at the three different times. From these
coordinates the average speed of individual beads in a single particle was
determined.</p>
      <p>Once the average bead speeds were determined, the bead speeds were converted
to viscosity using a calibration line, which was generated from measurements
of bead speed as a function of viscosity in sucrose particles (see Fig. 3).
Renbaum-Wolff et al. (2013b) showed that the calibration line for converting
bead speed into viscosity is independent of the type of organic materials
used to generate the line for a wide range of oxygen-to-carbon ratios,
surface tensions, and molecular weights of the organic materials.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Poke-flow experiment in conjunction with fluid simulation</title>
      <p>The method of applying physical force to estimate the phase of a particle
was introduced by Murray et al. (2012). The poke-flow method in conjunction
with fluid simulations to determine viscosities of particles was introduced
by Renbaum-Wolff et al. (2013a) and further extended and validated by
Grayson et al. (2015). Supermicron SOM particles (20–60 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m in
diameter) suspended on a hydrophobic substrate were located inside a
flow cell with RH control. The flow cell was similar to the one used for the
bead-mobility technique except it contained a small hole on the top through
which a sterilized sharp needle (0.9 mm <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 40 mm) (Becton-Dickson,
USA) could be inserted. The needle was mounted to a micromanipulator
(Narishige, model MO-202U, Japan) to allow precise control of the movement
of the needle. The needle was first positioned over the top of a SOM
particle and then moved down to pass through the center of the particle
(i.e., the particle was poked). The geometrical changes during and after poking a
particle were recorded using a reflectance optical microscope (Zeiss Axio
Observer, 40 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> objective) equipped with a CCD camera.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>Optical images of SOM particles (isoprene sample 3 in Table 1) at 80 % RH recorded during a typical bead-mobility experiment. Three
beads have been labeled in these panels with different colors. Included are
the <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> coordinates of these three beads which are used to determine
average bead speeds in the particles. The size of the scale bar is 20 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015-f02.pdf"/>

        </fig>

      <p>Figure 4 shows typical geometrical changes of the SOM particles that were
observed optically. Prior to poking, the particles had a spherical cap
(Fig. 4a1 and b1). Just after poking, the particle had a half-torus geometry
consisting of a ring of material with a hole at its center, which is
energetically unfavorable (time <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, Fig. 4a2 and b2). To minimize the
surface energy, the material flowed to fill the central hole (Fig. 4a3 and
b3). The area of the inner hole of the half-torus geometry was measured using
Zen software (Zeiss, Canada). The diameter of the equivalent hole area was
calculated based on the relationship <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>d</mml:mi><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mfrac><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:mi>A</mml:mi></mml:mrow><mml:mi mathvariant="italic">π</mml:mi></mml:mfrac><mml:msup><mml:mo>)</mml:mo><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:msup></mml:mrow></mml:math></inline-formula>,
where <inline-formula><mml:math display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula> is the equivalent area diameter of a hole of area, <inline-formula><mml:math display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula> (Reist,
1992). The experimental flow time, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, was
determined as the time taken for the equivalent area diameter to reach
50 % of the initial value. For a3 and b3 in Fig. 4, the
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> was determined to be 1.3 s at 26.5 % RH
and 273.9 s at 0 % RH. The <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> values were
converted to viscosity using simulations of fluid flow.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>Calibration line (black line) and 95 % prediction
intervals (grey lines) that relate mean bead speeds to viscosity. The
calibration line was generated using particles consisting of sucrose
(squares). Each symbol corresponds to the mean bead speed in one particle
determined at the given RH. The speed of one to three beads was used to determine
the mean in each particle.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015-f03.pdf"/>

        </fig>

      <p>Fluid flow simulations were performed to obtain the relationship between
viscosity and modeled flow time, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">mod</mml:mi><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, which is the time
when the inner hole of a poked particle reaches half of its initial
diameter. Using the relationship between modeled flow time, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">mod</mml:mi><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, and
viscosity, we converted experimental flow time, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, to viscosity. Simulations of material flow were carried
out using <italic>COMSOL Multiphysics</italic> (version 4.3a), which describes transport of mass and momentum,
including the effects of surface tension. The arbitrary Lagrangian–Eulerian
method was used to track the time evolution of the fluid as it flowed to
minimize the surface energy of the system. In the simulation, a half-torus
geometry consisting of an air–fluid interface and fluid-substrate interface was
used, which is similar to the geometry observed in the poke-flow
experiments. The mesh size used in the model was 4.04–90.9 nm. Details of
the simulation were described by Grayson et al. (2015).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Optical images from typical poke-flow experiments on
isoprene-derived SOM at <bold>(a)</bold> 26.5 % RH and <bold>(b)</bold> 0 %
RH. Panels <bold>(a1)</bold> and <bold>(b1)</bold> show pre-poking; panels
<bold>(a2)</bold> and <bold>(b2)</bold> show post-poking immediately after the needle
has been removed (time set <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0 s); panels <bold>(a3)</bold> and
<bold>(b3)</bold> show the experimental flow time,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, when the diameter of the hole has decreased
to 50 % of its initial size. Size of the scale bar is 20 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015-f04.pdf"/>

        </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p>Physical parameters used to simulate material flow in the poke-flow
experiments. <inline-formula><mml:math display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> indicate the radius of a tube and the radius of an inner
hole, respectively.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">Slip length</oasis:entry>  
         <oasis:entry colname="col3">Surface tension</oasis:entry>  
         <oasis:entry colname="col4">Density</oasis:entry>  
         <oasis:entry colname="col5">Contact angle</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">(nm)</oasis:entry>  
         <oasis:entry colname="col3">(mN m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col4">(g cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col5">(<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Values used to</oasis:entry>  
         <oasis:entry colname="col2">5<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">17<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">1.3<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">60 (if <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> &lt; <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi>R</mml:mi></mml:mrow></mml:math></inline-formula>),</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">calculate lower limit</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">90 (if <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> &gt; <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi>R</mml:mi></mml:mrow></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Values used to</oasis:entry>  
         <oasis:entry colname="col2">10000<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">72<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">1.3<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">90 (if <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> &lt; <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi>R</mml:mi></mml:mrow></mml:math></inline-formula>),</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">calculate upper limit</oasis:entry>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">60 (if <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> &gt; <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mi>R</mml:mi></mml:mrow></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table><table-wrap-foot><p><inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula> The range of slip length, which are the interactions between fluids
and solid surfaces, is based on literature data (Schnell, 1956; Churaev et
al., 1984; Watanabe et al., 1999; Baudry et al., 2001; Craig et al., 2001;
Tretheway and Meinhart, 2002; Cheng and Giordano, 2002; Jin et al., 2004;
Joseph and Tabeling, 2005; Neto et al., 2005; Choi and Kim et al., 2006;
Joly et al., 2006; Zhu et al., 2012; Li et al., 2014).
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> <uri>http://cameochemicals.noaa.gov</uri>.
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">c</mml:mi></mml:msup></mml:math></inline-formula> Kuwata et al. (2011), Nakao et al. (2013).
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">d</mml:mi></mml:msup></mml:math></inline-formula> Engelhart et al. (2008).</p></table-wrap-foot></table-wrap>

      <p>For the simulations, the following physical parameters were needed: slip
length, surface tension, contact angle, and material density for
isoprene-derived SOM. Table 2 shows the values used for these physical
parameters in the simulations. The lower and upper limits of the slip length
used in the simulations were 5 nm and 10 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m based on literature data
of the interactions between fluids and solid surfaces (Schnell, 1956;
Churaev et al., 1984; Watanabe et al., 1999; Baudry et al., 2001; Craig et
al., 2001; Cheng and Giordano, 2002; Tretheway and Meinhart, 2002; Jin et
al., 2004; Joseph and Tabeling, 2005; Neto et al., 2005; Choi and Kim et
al., 2006; Joly et al., 2006; Zhu et al., 2012; Li et al., 2014). The upper
limit for surface tension of SOM was 72 mN m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, corresponding to the
surface tension of pure water at 293 K (Engelhart et al., 2008), and the
lower limit was 17 mN m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, corresponding to the surface tension of
liquid isoprene at 293 K (<uri>http://cameochemicals.noaa.gov</uri>). The density of
isoprene-derived SOM used was based on the observed density of
isoprene-derived SOM (Kuwata et al., 2011; Nakao et al., 2013). Contact
angles were determined using 3-D fluorescence confocal images of the SOM
particles on the substrates, which range from 60 to 90<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (Fig. 5). In the simulation, the relationship between viscosity
and contact angle was dependent on the ratio of tube radius to the inner
hole radius (see Table 2). Other input to the simulations included the inner
and outer diameters of the torus geometry, which were based on the optical
images of the material after poking the particles.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Viscosities of isoprene-derived SOM determined by the
bead-mobility technique</title>
      <p>Shown in Fig. 6a are the mean bead speeds as a function of RH at 295 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 K determined in the bead-mobility experiments. The different colors
represent different samples (Table 1). Each symbol corresponds to the mean
bead speed determined for one sample at one RH. The speeds of at least three
beads were used to determine a mean bead speed. Figure 6b shows viscosities
calculated from the mean bead speeds shown in Fig. 6a and the calibration
line shown in Fig. 3. The <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> error bars in Fig. 6b represent the 95 %
prediction intervals from the calibration line. Figure 6b illustrates that
the change in viscosities with a change in concentration of the SOM in the
OFR (when going from 300–400 to 500–1000 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) is less than the uncertainties in the
measurements. Since the viscosities do not appear to vary with
concentrations of the SOM in the OFR over the range studied, we group the
data in Fig. 6b by RH to provide an overall summary from the bead-mobility
technique (see Fig. 6c). Three data points were included in each group.
Figure 6c also illustrates that the viscosity for isoprene-derived SOM
increased from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula> Pa s as the RH decreased from 84.5 to
63.7 %. Viscosities were not determined for RH &lt; 60 % using the
bead-mobility technique because the circulation rate of beads in a particle
became too slow to readily observe.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Side-view image of isoprene-derived SOM recorded with a
confocal fluorescence microscope (Leica SP5 II, 10 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> objective). The
image was generated with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="normal">excitation</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 458 nm and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="normal">emission</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 465–700 nm at the temperature of 293 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 K. The
two sets of dashed lines trace the boundaries of the particle from which the
contact angle is measured. The white dashed lines encompass the maximum
possible boundary with a contact angle of 90<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> while the red
dashed lines surround the brightest hence the minimum boundary of the
particle with a contact angle of 60<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. The size of the scale bar is
20 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015-f05.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <title>Viscosities of isoprene-derived SOM determined by the poke-flow
technique combined with fluid simulations</title>
      <p>RH-dependent <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> values of three different
isoprene-derived SOM samples measured at 295 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 K by the poke-flow
technique are shown in Fig. 7a. Each symbol in Fig. 7a represents the
measured <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> from one particle poked at one RH.
Figure 7a illustrates that the variation from sample to sample is less than
the variation within individual samples. Figure 7b presents the lower and
upper limits of viscosities calculated from the individual <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> values shown in Fig. 7a. For each data point in Fig. 7b, the
uncertainty in the viscosity is approximately 2 orders of magnitude. This
uncertainty is due to the uncertainties in the physical parameters used in
the simulations (see Table 2). In Fig. 7c, the viscosities of the particles
were grouped by RH with at least four data points in each group. The <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> error
bars in Fig. 7b represent the range of RH values in the group as well as
uncertainty of the RH measurements. The <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> error bars represent the lower and
upper limits of viscosity within the group. Figure 7c illustrates that the
viscosity ranges from approximately 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> to 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula> Pa s as the RH changes from 25.1 to 0 % RH.
Viscosities were not determined for RH &gt; 30 % using the
poke-flow technique because the material flows too fast to observe.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6"><caption><p>Results from bead-mobility experiments. <bold>(a)</bold> Mean bead speed
of individual SOM samples (i.e., isoprene 1, 2, and 3). Table 1 lists the
experimental conditions for each SOM sample. <bold>(b)</bold> Viscosity was
determined from the mean bead speeds and a calibration line (Fig. 3). The
<inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> error bars in <bold>(a)</bold> and <bold>(b)</bold> represent the RH range in a given experiment and
the uncertainty in RH measurements, and the <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> error bars represent 95 %
prediction intervals. <bold>(c)</bold> Mean viscosities in <bold>(b)</bold> grouped by RH: three data
points were included in each group. The <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> error bars represent 95 %
confidence intervals of viscosities in <bold>(b)</bold> grouped by RH and <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> error bars
indicate the lowest and highest RH ranges in the group and the uncertainty
in the RH measurements.</p></caption>
          <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015-f06.pdf"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p>Results from the poke-flow experiments: <bold>(a)</bold> <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> measured for the different samples. Each symbol
represents the measured <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> from poking one particle
at one RH. <bold>(b)</bold> Viscosities calculated from <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> where <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> error bars represent the calculated lower and upper limits of
viscosity using the simulations. The <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> error bars shown in <bold>(b)</bold> represent the
range of RH values in a given experiments and uncertainty in the RH
measurements. <bold>(c)</bold> Viscosities from the different samples grouped by RH. At
least four data points were included in each group. The <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> error bars represent
the lowest and highest RH ranges in the group and the uncertainty in the RH
measurements, and the <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> error bars represent the lower and upper limits of
viscosity within the group.</p></caption>
          <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015-f07.pdf"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
<sec id="Ch1.S4.SS1">
  <title>Phase of isoprene-derived SOM as a function of relative humidity</title>
      <p>Figure 8a displays together the viscosities of isoprene-derived SOM (marked
by purple) measured by the bead-mobility technique (Fig. 6c) and the
viscosities of isoprene-derived SOM measured by the poke-flow technique
(Fig. 7c). Based on our data, for RH &gt; 60 % the
isoprene-derived SOM falls into the range for a liquid phase (viscosity
&lt; 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> Pa s) while for RH &lt; 30 % the
isoprene-derived SOM falls into the range for a semisolid phase (10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> Pa s &lt; viscosity &lt; 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>12</mml:mn></mml:msup></mml:math></inline-formula> Pa s). At
no RH is the studied SOM a solid. Based on the rebound behavior of submicron
isoprene-derived SOM particles, Bateman et al. (2014) show that the
semisolid-to-liquid phase transition of these particles is in the range of
40–60 % RH for a viscosity transition in the range of 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> to
10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msup></mml:math></inline-formula> Pa s (light blue in Fig. 8a). Saukko et al. (2012)
measured the bounce fraction of SOM submicron particles derived from
isoprene photo-oxidation and inferred from their results that the particles
were semisolid or solid for &lt; 55 % RH. Our results are consistent
with these previous bounce and rebound experiments.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <?xmltex \opttitle{Comparison of viscosities of isoprene-derived SOM and $\alpha$-pinene-derived SOM}?><title>Comparison of viscosities of isoprene-derived SOM and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM</title>
      <p>Viscosities of SOM generated from the ozonolysis of <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene are
shown in Fig. 8b based on values reported in the literature (Perraud et al.,
2012; Abramson et al., 2013; Robinson et al., 2013; Bateman et al., 2014;
Kidd et al., 2014; Pajunoja et al., 2014; Wang et al., 2014). The
RH-dependent viscosities of the water-soluble component of SOM generated
from the ozonolysis of <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene are also included in Fig. 8b
(Renbaum-Wolff et al., 2013a). The values plotted at RH values <inline-formula><mml:math display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 70 % and RH values <inline-formula><mml:math display="inline"><mml:mo>≤</mml:mo></mml:math></inline-formula> 30 % were taken directly from Renbaum-Wolff et
al. (2013a). Between 40 and 70 % we determined viscosities by
converting <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>exp⁡</mml:mi><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">flow</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> values reported in Renbaum-Wolff et al. (2013a) to viscosities using the simulation discussed above (Sect. 2.4) and
presented in Grayson et al. (2015). For RH values between 40 and 70 %, we
did not take the viscosities directly from Renbaum-Wolff et al. (2013a)
since they only used simulations to estimate upper limits to viscosities in
this RH range.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><caption><p><bold>(a)</bold> Collection of viscosities of isoprene-derived SOM
particles from this study (purple) and Bateman et al. (2014) (light blue).
Viscosities of isoprene-derived SOM from this study are taken from values
shown in Figs. 6c and 7c. <bold>(b)</bold> Viscosities of <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM particles from literature (Perraud et al., 2012, cyan;
Abramson et al., 2013, dark blue; Robinson et al., 2013, brown; Bateman et
al., 2014, light blue; Kidd et al., 2014, grey; Pajunoja et al., 2014, green;
and Wang et al., 2014, black) and viscosities of water-soluble <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM particles from Renbaum-Wolff et al. (2013a) (pink). The
right <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axes present calculated diffusion coefficients of organic molecules
in SOM and calculated mixing times within 200 nm particles due to bulk
diffusion. Diffusion coefficients were calculated using the Stokes–Einstein
relation and mixing times were calculated using Eq. (2) (see Sect. 4.3).
<bold>(c)</bold> The average frequency distributions of RH from eight stations in
the Amazon Basin (Tabatinga, Barcelos, Itaituba, Monte Dourado, Iquitos,
Lábrea, Manicoré, and Manaus). Frequency distributions of RH from the
individual stations are shown in Fig. 9.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015-f08.pdf"/>

        </fig>

      <p>Based on a comparison of Fig. 8a and b, the viscosity of
isoprene-derived SOM (Fig. 8a) is on average lower than the viscosity of
<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM (Fig. 8b). This conclusion is consistent with
work by O'Brien et al. (2014) who also concluded that the viscosity of
isoprene-derived particles is lower than the viscosity of <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived particles based on the how much the particles flattened
after impaction on a substrate. The differences may be due to a difference
in the molecular weights of the two SOMs since viscosity can increase as the
molecular weight of an organic compound increases (Zobrist et al., 2008;
Koop et al., 2011). Although we do not have information on the
characteristic range of molecular weights of the SOM, it is reasonable to
expect that the median molecular weight of <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM will
be larger than that of isoprene-derived SOM since the molecular weight of
the precursors differ roughly by a factor of 2. The O : C ratio is also
expected to affect the viscosity of the SOM, with higher O : C values leading
to higher viscosities and glass transition temperatures (Koop et al., 2011;
Berkemeier et al., 2014). However, O : C alone is unlikely to explain the
difference in viscosity between isoprene-derived SOM and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM since the O : C of isoprene-derived SOM in our
experiments is expected to be between 0.64 and 1.1 (see Sect. 2.1) while the
O : C of SOM from the ozonolysis of <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene is typically in the range
of 0.3 to 0.5 (Chen et al., 2011).</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Diffusion coefficients and mixing times of large organics within
isoprene-derived SOM particles</title>
      <p>Using the viscosities determined in this study, we calculated diffusion
coefficients of large organic molecules (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">org</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) within isoprene-derived
SOM using the Stokes–Einstein relationship:
            <disp-formula id="Ch1.E1" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">org</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>k</mml:mi><mml:mi>T</mml:mi></mml:mrow><mml:mrow><mml:mn mathvariant="normal">6</mml:mn><mml:mi mathvariant="italic">π</mml:mi><mml:mi mathvariant="italic">η</mml:mi><mml:mi>r</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is the Boltzmann constant, <inline-formula><mml:math display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula> is the temperature (K), <inline-formula><mml:math display="inline"><mml:mi>r</mml:mi></mml:math></inline-formula> is the
hydrodynamic radius of a representative molecule of SOM within the SOM bulk
matrix, and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> is the viscosity (Pa s). The Stokes–Einstein
relation is not expected to predict with high accuracy the diffusion rates
of small gas molecules (e.g., O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, OH, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>, H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>O) close to
the glass transition RH (Champion et al., 2000; Shiraiwa et al., 2011; Power
et al., 2013). However, the Stokes–Einstein relation should give a
reasonable estimate of diffusion rates when the viscosity is lower than that
of a glass and when the molecules undergoing diffusion are roughly the same
size or larger than the molecules in the SOM matrix. When we assume the SOM
matrix is dominated by molecules similar to 2-methyltetrol and
2-methylerythritol (C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn>12</mml:mn></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>), which have been identified as
key oxidation productions of isoprene and have an isoprene skeleton
(Cleaeys et al., 2004; Carlton et al., 2009; Kleindienst et al., 2009), then
the Stokes–Einstein equation should be applicable when the viscosity is
lower than that of a glass (10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>12</mml:mn></mml:msup></mml:math></inline-formula> Pa s) and for organic
molecules with a molecular weight approximately <inline-formula><mml:math display="inline"><mml:mo>≥</mml:mo></mml:math></inline-formula> 136 g mol<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
although additional work is required to confirm these assumptions.</p>
      <p>Shown in Fig. 8a on a secondary <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis are the diffusion coefficients
calculated using this equation and assuming 0.4 nm for the hydrodynamic
radius (Renbaum-Wolff et al., 2013a). Figure 8a suggests that the diffusion
coefficients of organic molecules within the isoprene-derived SOM vary from
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> between 84.5 and 63.7 % RH and
from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>12</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>14</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> between 25.1 and 0 % RH.</p>
      <p>From the diffusion coefficients, we calculated the mixing times by
diffusion, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, of large organic molecules within an SOM
particle using the following equation (Shiraiwa et al., 2011; Bones et al.,
2012; Renbaum-Wolff et al., 2013a):
            <disp-formula id="Ch1.E2" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>d</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:mn mathvariant="normal">4</mml:mn><mml:msup><mml:mi mathvariant="italic">π</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msub><mml:mi>D</mml:mi><mml:mi mathvariant="normal">org</mml:mi></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math display="inline"><mml:mi>d</mml:mi></mml:math></inline-formula> is the particle diameter (taken as 200 nm, which is typical for the
accumulation mode of atmospheric particles; Shiraiwa et al., 2011). After
the mixing time, the concentration of the representative molecules anywhere
in the particles deviates by less than <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> from the equilibrium value.
The mixing times calculated with Eq. (2) are plotted in Fig. 8a on a
secondary <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis. Between 84.5 and 0 % RH, the mixing times within the
isoprene-derived SOM particles range from less than <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3.6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h) to
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1 h. Compared to the total isoprene-derived SOM,
water-soluble <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM shows longer mixing times ranging
from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1.1  <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s (<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> h) to as high as <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula> h over the
RH range of 90 to 25 %. Both isoprene-derived and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM can be classified as biogenic SOM, yet they clearly
have different viscosities and mixing times at a given RH.</p>
</sec>
</sec>
<sec id="Ch1.S5">
  <title>Atmospheric implications</title>
      <p>As an application of the data discussed above, we consider a case study for
the Amazon Basin, which represents the largest isoprene-dominant forested
region on Earth. We assess <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> within SOM particles in the
Amazon Basin during periods not strongly influenced by anthropogenic
emissions (Martin et al., 2010b). The wet season in the Amazon Basin
represents at times a clean environment having nearly pure biogenic aerosol
particles. For clean conditions, SOM typically accounts for
&gt; 95 % of the mass of aerosol particles with diameters
&lt; 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m in the Amazon Basin (Chen et al., 2009; Martin et
al., 2010a). The dry season can also have periods dominated by biogenic
aerosol particles, but periods strongly influenced by anthropogenic sources
such as biomass burning are also common (Andreae et al., 2002; Martin et al.,
2010a, b).</p>
      <p>To assess the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of SOM particles in the Amazon Basin
during clean periods, the first piece of information needed is the range of
RH values in this region. Figure 9 gives a frequency distribution of RH for
eight ground-based observation stations in the Amazon Basin (located in
Tabatinga, Barcelos, Itaituba, Monte Dourado, Iquitos, Lábrea,
Manicoré, and Manaus) for both the wet season (December to March, shown
in blue bars) and the dry season (June to September, shown in red bars). The
RH values used in these frequency distributions were taken from NOAA's
National Climatic Data Center (NCDC) (<uri>http://www.ncdc.noaa.gov/</uri>) and
are 12 h averages (daytime: 06:00–18:00, nighttime: 18:00–06:00 LT)
calculated from hourly values reported several times daily for the years of
2004 through 2014. All RH values taken from NOAA's NCDC were calculated from
measured temperatures and dew points. The eight stations shown in Fig. 9 were
chosen because they had good data records and were well spaced geographically
throughout the Basin. As shown in Fig. 9, RH typically ranges between 60 and
100 % during both dry and wet seasons in the Amazon Basin although there
is some variability with location and season. Figure 8c shows a frequency
distribution of 12 h average RH in the Amazon Basin using the data from all
eight ground-based stations from both the wet and dry seasons. Figures 9 and
8c illustrate that RH typically ranges from 60 to 100 % in the Amazon
Basin. Values below 60 % RH are rare.</p>
      <p>The second piece of information needed to assess <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for SOM
is temperature. For the eight ground-based stations shown in Fig. 9, for
both the wet and dry seasons the median temperature was 300 K and the
10th and 90th percentiles were 297 and 303 K, respectively.
These temperatures are above the estimated glass transition of a generic SOM
(Koop et al., 2011). The viscosities shown in Fig. 8a were determined using
a temperature of 295 <inline-formula><mml:math display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 1 K, which is at the lower end of the
temperature range for the Amazon. As temperature increases the viscosity is
expected to decrease for the same composition of water and SOM.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9"><caption><p>Frequency distributions of RH for the wet season (December–March,
shown in blue) and the dry season (June–September, shown in red) at eight
ground-based stations in the Amazon Basin. For the stations, hourly RH values
(calculated from measured temperature and dew point) were retrieved from
NOAA's National Climatic Data Center (<uri>http://www.ncdc.noaa.gov/</uri>) for
the years from 2004 to 2014. All data shown are 12 h averages.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/5145/2015/acp-15-5145-2015-f09.pdf"/>

      </fig>

      <p>The third piece of information needed to assess <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for
SOM in the Amazon Basin during clean conditions is the chemical composition
of the SOM during these periods. Previous studies have shown by multiple
lines of evidence that during clean conditions the composition of submicron
organic particles is largely consistent with SOM generated from isoprene and
terpene oxidation as well as a sesquiterpene contribution (Chen et al., 2009;
Martin et al., 2010a; Pöschl et al., 2010; Pöhlker et al., 2012; Chen
et al., 2015). Based on these studies, we model SOM particles in the Amazon
Basin during clean conditions as a mixture of isoprene-derived SOM, <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM, and other VOC-precursor-derived SOM. Furthermore, we
make a first-order approximation for modeling that the SOM can be adequately
described as a mix of isoprene-derived and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM since
we have the necessary corresponding data on viscosity. We also assume that
the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in these particles lies somewhere between the
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in isoprene-derived SOM and the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
in <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM shown in Fig. 8a and b. Bateman et al. (2014)
studied mixed SOM particles and found that the viscosity of single particles
decreased with an increase in the ratio of gas-phase isoprene to <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene precursors. Based on these assumptions and the typical RH and
temperature values found in the Amazon Basin, we estimate the
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of SOM particles in the Amazon Basin during clean
conditions will be less than or equal to approximately 0.1 h. Large-scale
modeling studies often assume that gas-phase organic compounds are rapidly
equilibrated within the bulk of SOM particles (Henze and Seinfeld, 2006;
Tsigaridis and Kanakidou, 2007; Heald et al., 2008). Our results and
conclusions are consistent with this assumption for the Amazon Basin during
clean periods.</p>
      <p>Using the data shown in Fig. 8 we also speculate on the phase of SOM in the
Amazon Basin during clean periods. For this analysis we also make the
first-order approximation that the SOM in this region can be adequately
described as a mix of isoprene-derived and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM and
that the viscosity of these particles lies somewhere between the viscosities
of isoprene-derived SOM and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene-derived SOM shown in Fig. 8a and
b. Based on these assumptions and typical RH values (&gt; 60 %)
and temperature ranges (297–303 K) found in the Amazon Basin (Fig. 8c), the
SOM particles during clean conditions are likely liquid. This conclusion is
consistent with the images of Amazonian particles collected by Pöschl et
al. (2010) that illustrate the particles are liquid during the wet season
(AMAZE-08). This conclusion is also consistent with results from Chen et
al. (2015), who inferred that SOM particles in the Amazon Basin are liquid
based on the absence of particle rebound when sampling with an aerosol mass
spectrometer.</p>
      <p>One caveat to the conclusions above is that the mass concentrations used in
our studies differ from the mass concentrations observed in the Amazon Basin.
The mass concentrations of SOM observed in the Amazon Basin during the wet
season are on order of 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the submicron mode
(Martin et al., 2010a), while we used mass concentrations of 100 to
1000 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> when generating isoprene-derived SOM due to
experimental constraints. We did not see any dependence on mass concentration
across the studied range. Furthermore, the study of Bateman et al. (2014) was
carried out at lower mass concentrations of 10–20 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
and those results appear to agree with our results in Fig. 8a. Even so,
additional studies are needed to determine whether lower mass concentrations
of isoprene-derived SOM approaching 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> might lead to
higher viscosities.</p>
</sec>
<sec id="Ch1.S6" sec-type="conclusions">
  <title>Conclusions</title>
      <p>We investigated RH-dependent viscosities of micrometer-sized SOM particles
produced from isoprene photo-oxidation and having mass concentrations of 100
to 1000 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>g m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> using a bead-mobility technique and a
poke-flow technique combined with fluid simulations. At room temperature,
the bead-mobility experiments showed the viscosities of isoprene-derived SOM
increased from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msup></mml:math></inline-formula> Pa s when the RH was decreased from 84.5 to
63.7 %. The poke-flow experiments and fluid simulation showed viscosities
of isoprene-derived SOM increased from <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>
to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:math></inline-formula> Pa s when the RH
decreased from 25.1 to 0 %. This suggests that the isoprene-derived SOM
particles are a liquid at RH &gt; <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 60 % and a
semisolid at RH &lt; <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 30 %. This result is in
agreement with Bateman et al. (2014), who showed that the
semisolid-to-liquid phase transition of these particles is in the range of
40–60 % RH, as well as with Saukko et al. (2012) who inferred that
these particles are a semisolid or solid at RH &lt; 55%. Using the
viscosity data and the Stokes–Einstein equation, the diffusion coefficients
of large gas-phase organic molecules within the isoprene-derived SOM
particles were calculated to be <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to
<inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn>14</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> cm<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> between
84.5 and 0 % RH. Mixing time (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">τ</mml:mi><mml:mi mathvariant="normal">mixing</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) by diffusion of large
organic molecules within 200 nm isoprene-derived SOM particles was also
estimated to range from less than 1 s to <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.1 h across the
RH range.</p>
      <p>The Amazon Basin is an environment rich in biogenic SOM derived from isoprene
and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene. Based on the distributions of RH and temperature seen
at eight stations in the Amazon Basin, RH and temperature typically range
from 60 to 100 % and 297 to 303 K during wet and dry seasons in this
region, respectively. Based on these RH and temperature values and
assumptions about the dominant chemical compositions of SOM particles, we
concur with the laboratory study of Bateman et al. (2014) and expect SOM
particles to be liquid in the Amazon Basin during pristine conditions. In
addition, we expect large gas-phase organic molecules to reach equilibrium
with the bulk of these SOM particles on a short time scale.</p>
</sec>

      
      </body>
    <back><ack><title>Acknowledgements</title><p>We thank Katie Potter, James W. Grayson, and Saeid Kamal for
experimental and technical support and Adam P. Bateman for helpful
input on the manuscript. This work was supported by the Natural Sciences and
Engineering Research Council of Canada. Support from the US National Science
Foundation and the US Department of Energy is also acknowledged.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: T. Bertram</p></ack><ref-list>
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