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  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/acp-15-10645-2015</article-id><title-group><article-title>The impact of observing characteristics on the ability to predict ozone under varying polluted photochemical regimes</article-title>
      </title-group><?xmltex \runningtitle{Observing characteristics and the prediction of ozone}?><?xmltex \runningauthor{P.~D.~Hamer et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2 aff3">
          <name><surname>Hamer</surname><given-names>P. D.</given-names></name>
          <email>paul.d.hamer@gmail.com</email><email>paul.hamer@meteo.fr</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Bowman</surname><given-names>K. W.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0002-8659-1117</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff4">
          <name><surname>Henze</surname><given-names>D. K.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff5">
          <name><surname>Attié</surname><given-names>J.-L.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Marécal</surname><given-names>V.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1077-909X</ext-link></contrib>
        <aff id="aff1"><label>1</label><institution>Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Centre National de Recherches  Météorologiques – Groupe d'étude
de l'Atmosphère Météorologique, Météo-France and CNRS, UMR3589, Toulouse, France</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>NILU – Norwegian Institute for Air Research, Kjeller, Norway</institution>
        </aff>
        <aff id="aff4"><label>4</label><institution>Department of Mechanical Engineering, University of Colorado, Boulder, Colorado, USA</institution>
        </aff>
        <aff id="aff5"><label>5</label><institution>Laboratoire d'Aérologie, Université de Toulouse, CNRS, UMR, Toulouse, France</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">P. D. Hamer (paul.d.hamer@gmail.com, paul.hamer@meteo.fr)</corresp></author-notes><pub-date><day>25</day><month>September</month><year>2015</year></pub-date>
      
      <volume>15</volume>
      <issue>18</issue>
      <fpage>10645</fpage><lpage>10667</lpage>
      <history>
        <date date-type="received"><day>23</day><month>December</month><year>2014</year></date>
           <date date-type="rev-request"><day>23</day><month>February</month><year>2015</year></date>
           <date date-type="rev-recd"><day>29</day><month>July</month><year>2015</year></date>
           <date date-type="accepted"><day>25</day><month>August</month><year>2015</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
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<self-uri xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015.pdf</self-uri>


      <abstract>
    <p>We conduct analyses to assess how characteristics of observations of ozone
and its precursors affect air quality forecasting and research. To carry out
this investigation, we use a photochemical box model and its adjoint
integrated with a Lagrangian 4D-variational data assimilation system. Using
this framework in conjunction with pseudo-observations, we perform an ozone
precursor source inversion and estimate surface emissions. We then assess the
resulting improvement in ozone air quality prediction. We use an analytical
model to conduct uncertainty analyses. Using this analytical tool, we address
some key questions regarding how the characteristics of observations affect
ozone precursor emission inversion and in turn ozone prediction. These
questions include what the effect is of choosing which species to observe, of
varying amounts of observation noise, of changing the observing frequency and
the observation time during the diurnal cycle, and of how these different
scenarios interact with different photochemical regimes. In our investigation
we use three observed species scenarios: CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>; ozone, CO, and
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>; and HCHO, CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. The photochemical model was set up to
simulate a range of summertime polluted environments spanning NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-(NO
and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>)-limited to volatile organic compound (VOC)-limited conditions.
We find that as the photochemical regime changes, here is a variation in the
relative importance of trace gas observations to be able to constrain
emission estimates and to improve the subsequent ozone forecasts. For
example, adding ozone observations to an NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CO observing system is
found to decrease ozone prediction error under NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>- and VOC-limited
regimes, and complementing the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and CO system with HCHO observations
would improve ozone prediction in the transitional regime and under
VOC-limited conditions. We found that scenarios observing ozone and HCHO with
a relative observing noise of lower than 33 % were able to achieve ozone
prediction errors of lower than 5 ppbv (parts per billion by volume).
Further, only observing intervals of 3 h or shorter were able to
consistently achieve ozone prediction errors of 5 ppbv or lower across all
photochemical regimes. Making observations closer to the prediction period
and either in the morning or afternoon rush hour periods made greater
improvements for ozone prediction: 0.2–0.3 ppbv for the morning rush hour
and from 0.3 to 0.8 ppbv for the afternoon compared to only 0–0.1 ppbv for
other times of the day. Finally, we made two complementary analyses that show
that our conclusions are insensitive to the assumed diurnal emission cycle
and to the choice of which VOC species emission to estimate using our
framework. These questions will address how different types of observing
platform, e.g. geostationary satellites or ground monitoring networks, could
support future air quality research and forecasting.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\newpage}?>
<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Ozone is a hazard to human health <xref ref-type="bibr" rid="bib1.bibx45 bib1.bibx52 bib1.bibx64" id="paren.1"/> and
plants and animals <xref ref-type="bibr" rid="bib1.bibx44 bib1.bibx19 bib1.bibx46 bib1.bibx63" id="paren.2"/> and
a greenhouse gas <xref ref-type="bibr" rid="bib1.bibx25" id="paren.3"/>. Prediction of ozone air quality on local
and regional scales is key for providing prior warning of impending ozone
exceedances <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx8" id="paren.4"/>. Knowledge of the processes
that control the variability in ozone precursors is vital for understanding
and predicting ozone air quality.</p>
      <p>Currently, a wide variety of techniques are used to predict ozone
concentrations ranging from statistically based models <xref ref-type="bibr" rid="bib1.bibx20" id="paren.5"/>
and neural networks <xref ref-type="bibr" rid="bib1.bibx68" id="paren.6"/> to prognostic models of atmospheric
processes that include data
assimilation <xref ref-type="bibr" rid="bib1.bibx21 bib1.bibx47 bib1.bibx69 bib1.bibx29 bib1.bibx38" id="paren.7"/>.
For prognostic models, uncertainties result from meteorology, the limitations
of the photochemical mechanisms, wet and dry deposition, uncertainties in the
emissions of ozone precursors, and, for data assimilation, observation
uncertainty <xref ref-type="bibr" rid="bib1.bibx7 bib1.bibx8" id="paren.8"/>. Most current statistical
and data assimilation air quality forecasting techniques rely primarily on
surface observing networks, but satellite observations are increasingly
coming to the fore <xref ref-type="bibr" rid="bib1.bibx35" id="paren.9"/>.</p>
      <p>Ozone pollution can develop under different polluted photochemical regimes.
Under low to moderate levels of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> (NO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) pollution, such as
can be found in rural and suburban environments, increases in NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> lead to
proportional increases in ozone, which is why this regime is classed as
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> limited <xref ref-type="bibr" rid="bib1.bibx61 bib1.bibx56 bib1.bibx26" id="paren.10"/>. Under much higher
levels of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> pollution, i.e. those present in densely populated regions,
increases in NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> bring about decreases in ozone. Under these conditions,
the only means by which ground-level ozone can increase are via increases in
volatile organic compound (VOC) emissions <xref ref-type="bibr" rid="bib1.bibx16" id="paren.11"/>, and
consequently this regime is considered to be VOC limited. Further, studies
show that the sensitivity of ozone to either NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> or VOCs can vary with
time, e.g. during different days of the
week <xref ref-type="bibr" rid="bib1.bibx2 bib1.bibx3" id="paren.12"/>. The priorities to monitor and
observe ozone and its different precursors therefore vary according to
location and time.</p>
      <p>Observations and models, and their combination through data assimilation,
comprise essential tools for air quality
prediction <xref ref-type="bibr" rid="bib1.bibx69 bib1.bibx58 bib1.bibx70" id="paren.13"/>. Observations are an
essential part of such systems, so it follows that their characteristics
could directly affect their performance. We seek to address this connection
in our study. Given this, we will now attempt to review the relevant
characteristics of the current and planned (in the near term) state of the
air quality monitoring network in order to explain the motivation for our
work and, later, to place some of our findings in context.</p>
      <p>The US national surface air quality observing network typically observes a
wide range of chemical species. For instance, surface monitoring sites within
California (<uri>http://www.arb.ca.gov/adam/</uri>) have instruments that can
measure in situ ozone, CO, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, nitrogen oxide, particulate matter with
diameters of 2.5 and 10 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">µ</mml:mi></mml:math></inline-formula>m, sulfur dioxide (SO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>), methane, total
hydrocarbons, and hydrogen sulfide. The surface network is also usually able
to make observations at least at an hourly temporal resolution. However, due
to the spatial limitations of the surface air quality monitoring network,
space-borne remote-sensing observations, which typically have greater spatial
sampling, are also able to support air quality research and operational air
quality forecasting <xref ref-type="bibr" rid="bib1.bibx35" id="paren.14"/>.</p>
      <p>Surface station in situ data are made at a high spatial resolution (a few
metres up to a tens of kilometres), which is typically much higher than most
air quality models. As a result, this introduces the problem of having
representativity errors between the model, which is unable to represent
fine-scale variability, and the observations that can measure this
variability. This problem therefore limits the efficacy of data assimilation
and systems need to be carefully designed to take this type of error into
account.</p>
      <p>For this study, the spatial characteristics of observations from different
platforms are not considered, but the advantages satellite data offer in
terms of increased spatial coverage have been recognised. Consequently,
various studies have been conducted that highlight the benefits of
satellite-borne instruments for air quality research
 <xref ref-type="bibr" rid="bib1.bibx1 bib1.bibx30 bib1.bibx39 bib1.bibx41 bib1.bibx28 bib1.bibx4 bib1.bibx34 bib1.bibx11 bib1.bibx12 bib1.bibx32 bib1.bibx17" id="paren.15"/>.
Further, satellite observations of air pollutants have been used within data
assimilation models to advance air quality research
<xref ref-type="bibr" rid="bib1.bibx54 bib1.bibx5 bib1.bibx51 bib1.bibx69 bib1.bibx50" id="paren.16"/>.</p>
      <p>Excluding the issue of spatial sampling, there are considerable differences
between remote-sensing observations and the existing surface observing
network. Each individual ground station is able to observe a wider range of
species at the surface (see above) but only at a single point. On the other
hand, space-based remote-sensing techniques can only observe a limited number
of species that have relevance to air quality (such as ozone, CO, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>,
SO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula>, glyoxal, and HCHO), have coarser horizontal spatial
resolution observing with a footprint ranging from several to up to tens of
kilometres, and have (with current capabilities) only limited vertical
resolution and sensitivity to the surface or boundary layer. Also, all of the
studies cited above used instruments onboard satellites in low earth orbit
(LEO). Due to the orbital configuration, LEO-borne instruments are only able
to observe the same location on a far more infrequent basis compared to the
temporal sampling of the ground-based network.</p>
      <p>Instruments onboard geostationary (GEO) satellites can also offer good
spatial coverage (on the continental and regional scale) without sacrificing
temporal sampling. This makes them potentially ideal to support future air
quality research and forecasting. However, in order to achieve this goal,
developments must be made to improve satellite instrument sensitivity to the
boundary layer and surface gas phase composition <xref ref-type="bibr" rid="bib1.bibx35" id="paren.17"/>. Various
strategies have been proposed to achieve this aim (primarily for CO and
ozone). They typically consist of either combining wavelength bands that have
been previously exploited, i.e. ultraviolet (UV), visible (VIS), and IR
(infrared) <xref ref-type="bibr" rid="bib1.bibx36 bib1.bibx67 bib1.bibx65 bib1.bibx18 bib1.bibx6" id="paren.18"/>, or
by focusing on new wavelength bands, i.e. the Chappuis bands for ozone in the
visible range <xref ref-type="bibr" rid="bib1.bibx72" id="paren.19"/> that offer potential novel benefits. The UV
and the Chappuis band in the visible range were combined theoretically to
determine the benefit of such an approach during the development of the TEMPO
instrument <xref ref-type="bibr" rid="bib1.bibx73" id="paren.20"/> and as part of a European
initiative <xref ref-type="bibr" rid="bib1.bibx22" id="paren.21"/>.</p>
      <p>As a result of the perceived benefits, several GEO missions are currently in
the various stages of planning. These include the Geostationary Coastal and
Air Pollution Events (GEO-CAPE) planned by NASA to cover the North American
continent (<uri>http://science.nasa.gov/earth-science/decadal-surveys/</uri>).
Sentinel 4 (<uri>http://www.esa.int/esaLP/SEM3ZT4KXMF_LPgmes_0.html</uri>) is
planned by ESA to cover Europe, and the Geostationary Environment
Spectrometer (GEMS) <xref ref-type="bibr" rid="bib1.bibx37" id="paren.22"/> is aimed at providing coverage of East
Asia. Further, NASA's decadal survey and <xref ref-type="bibr" rid="bib1.bibx37" id="text.23"/>
state that GEO-CAPE and GEMS will observe the
following trace gases: ozone, CO (not with GEMS), NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, HCHO, and
SO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>.</p>
      <p>GEO-based observations of trace gases are therefore becoming more relevant
for the study of air quality and for operational air quality forecasting. For
the planned GEO missions, various choices exist regarding which wavelength
bands to observe in, and these will influence the already limited range of
observable species in the troposphere. In addition, instrument design choices
affect how often observations can be made, at what time of day, and how well.
For instance, thermal infrared (TIR)-based instruments cannot measure
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, and UV–VIS instruments cannot observe during the night-time. Thus,
instrument design choices will affect the future capabilities of these
missions.</p>
      <p>We have demonstrated that a range of possible capabilities and
characteristics exist for both the current and planned air quality observing
systems (ground and satellite based). Within the scope of this paper, we
study how the frequency and specific timing during the day of observation,
the species that are measured, and how well they are measured affect the
ability to conduct air quality research and to aid air quality forecasting
using a data assimilation system. This interaction between observation
characteristics and data assimilation system performance is interesting and
needs to be studied. Therefore, addressing this question will be of interest
to the current air quality observing network and to the planned or future GEO
air quality focused missions. In order to do this, we carry out a series of
sensitivity analyses using different sets of pseudo-observations to test the
influence that various observation characteristics have upon the ability to
predict ozone within an idealised model. This model consists of a
photochemical box model, its adjoint, and a 4D-variational data assimilation
system set-up to constrain ozone precursor emission uncertainties (NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>,
CO, and VOCs). This framework thereby mimics a state of the art air quality
forecasting system. We conduct an uncertainty analysis using a linear
estimation technique for each of our sensitivity tests. We are able to
perform the uncertainty analysis owing to the fact that we use a box model
because it limits the size of the matrices we solve for. Within the context
of a summertime ozone pollution episode that emerges during stagnant
anticyclonic conditions, we attempt to address the following specific
questions:</p>
      <p><list list-type="bullet">
          <list-item>

      <p>How does the ability to predict ozone vary across three separate observing
scenarios? The first uses only CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> observations (CN), the second
uses Ozone, CO, and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (OCN), and the third uses HCHO, CO, and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
(HCN).</p>
          </list-item>
          <list-item>

      <p>What are the effects of both observing frequency and the choice of when
to observe on the prediction of ozone within our framework?</p>
          </list-item>
          <list-item>

      <p>How does observation noise, when applied evenly onto each observation,
affect ozone prediction in our system?</p>
          </list-item>
          <list-item>

      <p>How are the results of these sensitivity tests affected by photochemical
regime (i.e., either NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>- or VOC-limited regimes)?</p>
          </list-item>
          <list-item>

      <p>Ignoring ozone prediction, which combination of observed species allows
the best constraint on ozone precursor emissions?</p>
          </list-item>
        </list></p>
      <p>In order to support our conclusions regarding the aims above we carry out a
variety of complementary analyses</p>
      <p><list list-type="bullet">
          <list-item>

      <p>to demonstrate that the 4D-variational data assimilation scheme can
solve the full non-linear retrieval of the emission parameters;</p>
          </list-item>
          <list-item>

      <p>to test the robustness of our methodology to choices regarding our
assumed diurnal emission profile;</p>
          </list-item>
          <list-item>

      <p>to test whether the assumed VOC emission uncertainties can be represented
using different VOCs.</p>
          </list-item>
        </list>Section 2 describes all aspects of the methodology, Sect. 3 describes the
results from each of the analyses, Sect. 4 discusses our results, Sect. 5
details our conclusions.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methodology</title>
<sec id="Ch1.S2.SS1">
  <title>Overview</title>
      <p>We use a photochemical box model run over 3 days to represent a worsening
period of ozone air quality during a stagnation event. Meteorological
stagnation events under hot, sunlit conditions over urban areas typically
lead to poor ozone air quality <xref ref-type="bibr" rid="bib1.bibx26 bib1.bibx62" id="paren.24"/>. We assume
that the idealised mixing and transport represented in the box model are
sufficient to represent the meteorology during anticyclonic conditions. For
each of the different sensitivity tests that we perform we use different sets
of pseudo-observations of ozone, HCHO, CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (see Sect. 2.3 and
examine Fig. <xref ref-type="fig" rid="Ch1.F3"/> to see an example of the
pseudo-observations relative to the true ozone state) in order to separately
constrain the ozone precursor emissions with the 4D-variational data
assimilation system. The ozone precursor emissions have known a priori
errors. We then make a prediction of ozone using the a posteriori emissions.
Within the model framework, days 1–2 represent the period over which
observations are made and the assimilation is carried out and the final day
represents the prediction and monitoring period. Within this final phase, we
compare the ozone prediction, based upon the a posteriori emissions, to the
ozone true state in order to assess the assimilation performance. We support
this assessment using a range of statistics and diagnostics that shall be
discussed shortly.</p>
      <p>The use of 4D-variational data assimilation to solve the ozone precursor
emission inversion problem is consistent with the current state of the art in
prognostic air quality forecast modelling development. For example, the
Community Multi Scale Air Quality modelling system (<xref ref-type="bibr" rid="bib1.bibx23" id="altparen.25"/>),
the Sulfur Transport Eulerian Model (<xref ref-type="bibr" rid="bib1.bibx69" id="altparen.26"/>), and
<xref ref-type="bibr" rid="bib1.bibx14" id="text.27"/> are all developing such assimilation capabilities. Thus,
our model framework is relevant to and is reflective of the current and
future direction of air quality forecasting.</p>
      <p>In order to establish the utility of more complex air quality forecasting
systems that might use 4D-variational data assimilation, our prototype
forecasting system is demonstrated theoretically. Since the emission
inversion problem that we explore only becomes more complex as the model
state space increases and additional sources of uncertainty are introduced, a
failure to show sufficiently reduced prediction error in this simplified
setting would indicate that more complex systems are unlikely to fare better.
Sufficient prediction model error within our framework is therefore a
necessary but not sufficient condition for more complex 4D-variational data
assimilation forecasting systems using air quality observations to be
successful.</p>
      <p>One other advantage of selecting a photochemical box model is that we are
able to generate a Jacobian describing the model response to emission
parameter perturbations, which can be used within an analytical modelling
framework to conduct uncertainty analysis. It would be very difficult to
produce a Jacobian within regional or global chemical transport models in a
timely fashion given the size of the model state space. Therefore, we use an
analytic model (derived from the photochemical box model) that is simplified
relative to the full assimilation framework. This is a linear estimation
technique based upon <xref ref-type="bibr" rid="bib1.bibx53" id="text.28"/>. To support our analyses we
calculate the following diagnostics using this method: a posteriori ozone
prediction error covariance, a posteriori emission parameter error
covariance, the emission averaging kernel, and the associated degrees of
freedom of signal.</p>
      <p>The 4D-variational (4D-var) data assimilation and uncertainty analysis using
the linear estimation are therefore complementary methods, and we use both
techniques to achieve our aim of exploring the effect of observing
characteristics on ozone prediction. In addition, we conduct a series of
supporting analyses to test some of our assumptions.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Photochemical box model</title>
      <p>A pseudo 1-D photochemical box model was built using the Kinetic
Pre-Processor (KPP) <xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx9 bib1.bibx55" id="paren.29"/>. The model is
not truly 1-D in the vertical because we use a parameterisation to describe
variability in the boundary layer height and mixing volume. The Rosenbrock
solver is used to integrate the KPP-generated ordinary differential equations
required to calculate trace gas concentrations <xref ref-type="bibr" rid="bib1.bibx15" id="paren.30"/>. The
photochemical mechanism consists of 171 gas phase species and 524 chemical
reactions simulating the degradation of hydrocarbons from C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> to C<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:math></inline-formula>
including isoprene and is based upon the Master Chemical Mechanism v3.1
<xref ref-type="bibr" rid="bib1.bibx27" id="paren.31"/> (<uri>http://mcm.leeds.ac.uk/MCM/</uri>). In addition, the
model includes dry deposition for all relevant chemical species, it contains
a two-parameter photolysis scheme, and it simulates the emission of ozone
precursors including NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>, CO, and VOCs.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>The various different profiles of the temporal variability emission
factor, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, used in the analysis of the emission solution sensitivity to
diurnal emission variability. The red dashed and the solid black lines
indicate the alternative and standard emissions variabilities, respectively.
The different profiles of variability are indicated at the top of each panel
in bold text.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f01.pdf"/>

        </fig>

      <p>Coastal urbanised southern California (SC) has historically been, and
continues to be, an interesting area of study for air quality owing to the
large-scale urbanisation and population, the resulting anthropogenic
emissions, and the meteorological conditions during summertime that are
favourable for the development of photochemical smog conditions. We therefore
set up the box model to study conditions that are analogous to this region
and environment. Consequently, we situate the box model at 33<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N,
run it from 30 June to 2 July, and use an atmospheric humidity equivalent to
a volume mixing ratio of 0.0162. In addition, we use anthropogenic (NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>,
CO, and VOCs) and biogenic (isoprene) emissions that result in a range of
atmospheric mixing ratios typical for urbanised SC.</p>
      <p>The diurnal emission variability in anthropogenic compounds is prescribed
according to the National Atmospheric Emissions Inventory (NAEI)
(<?xmltex \hack{\mbox\bgroup}?><uri>http://www.naei.org.uk/emissions/</uri><?xmltex \hack{\egroup}?>) for an urbanised area (see
Fig. <xref ref-type="fig" rid="Ch1.F1"/>), and the isoprene emission variability is
parameterised to correlate to solar zenith angle offset by 2 h to consider
both temperature and photon flux effects <xref ref-type="bibr" rid="bib1.bibx60 bib1.bibx59" id="paren.32"/>. The
isoprene emissions have an average daily emission of
1.7 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula> molecules m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and an afternoon peak
of 4.6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula> molecules m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which yields
modelled isoprene mixing ratios less than 10 pptv (parts per trillion by
volume) typical for this region. The diurnal variability in the isoprene
emissions is separate and distinct to the anthropogenic VOCs. From now on,
when we discuss VOCs we are referring to anthropogenic VOCs unless otherwise
stated. The VOC speciation is defined according to NAEI and the total peak
emission of carbon via VOCs (excluding isoprene) is
2.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>12</mml:mn></mml:msup></mml:math></inline-formula> carbon atoms m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and the average
emission is 1.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>12</mml:mn></mml:msup></mml:math></inline-formula> carbon atoms m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.
These anthropogenic VOC emissions are typical for urbanised regions. Boundary
layer dynamics are described with a prescribed variability in mixing height
ranging from 500 to 1500 m and mixing between the boundary layer and free
troposphere equivalent to a constant 10 % mass exchange per hour. In our
model, the vertical extent represents the full depth of the boundary layer.
Background free tropospheric concentrations of long-lived species are assumed
to remain constant and are defined in Table <xref ref-type="table" rid="Ch1.T1"/>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p>Background free-tropospheric concentrations of trace gases mixed
into the boundary layer in the photochemical model. NMHCs indicate
non-methane hydrocarbons.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Chemical species</oasis:entry>  
         <oasis:entry colname="col2">Background mixing ratio</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Ozone</oasis:entry>  
         <oasis:entry colname="col2">30 ppbv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">NO</oasis:entry>  
         <oasis:entry colname="col2">100 pptv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">50 pptv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CO</oasis:entry>  
         <oasis:entry colname="col2">80 ppbv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CH<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">1.76 ppm</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">NMHCs</oasis:entry>  
         <oasis:entry colname="col2">100–200 pptv each</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>The model is run under a range of photochemical conditions typical for
urbanised SC. This is achieved by varying the NO emissions across nine
different scenarios that span the full range of modelled ozone responses with
respect to changing NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> concentration (i.e. from NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>- to
VOC-limited conditions). We use the same emissions for the other species
across all of these different NO emission scenarios. For the purposes of the
emission inversion, we define our ozone precursor emissions in a simplified
form (excluding emitted species not considered in the inversion) as</p>
      <p><?xmltex \hack{\newpage}?>

                <disp-formula id="Ch1.E1" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ϕ</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.33em"/><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="normal">NO</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">CO</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">VOC</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represents the time-independent emission scaling factors for
the emitted species, <inline-formula><mml:math display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> represents the emissions with a
prescribed and repeating diurnal cycle for each emitted species. The emission
inversion solves for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the time-independent emission scaling factors,
which can be represented as a vector, <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula>, for the emitted species,
<inline-formula><mml:math display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, as shown by

                <disp-formula id="Ch1.E2" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mfenced open="[" close="]"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:mfenced><mml:mi>i</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.33em"/><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="normal">NO</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">CO</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">VOC</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          Further, we define the true state of the emission scaling factors as
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi></mml:mrow></mml:math></inline-formula>. The variability in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is shown in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>, and this variability is represented by

                <disp-formula id="Ch1.E3" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mspace width="0.33em" linebreak="nobreak"/><mml:mo>=</mml:mo><mml:mspace linebreak="nobreak" width="0.33em"/><mml:msub><mml:mi>e</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is the temporal variability emission factor for all of the
emitted species and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the time-independent emission for each
species. Note then that all of the anthropogenic emissions (NO, CO, and VOCs
– <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>) share the same temporal variability. The variability in <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
is shown in Fig. <xref ref-type="fig" rid="Ch1.F1"/> as the “standard emission
variability”. Table <xref ref-type="table" rid="Ch1.T2"/> shows the values of
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mtext>CO</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> used in our model
simulations.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p>Values of the different parameters and emissions used in the
photochemical box model. The emissions are shown with the corresponding units
of molecules m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Since <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> is 1.89, the
average emissions, <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>E</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>, are a factor of 1.89 larger than
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. For <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mrow><mml:mi>E</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the value shown outside the
brackets is equivalent to <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>, and the values in the
brackets (same units) denote the range in the emissions that arise from using
the full range of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (0.5–2.5).</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.95}[.95]?><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Model</oasis:entry>  
         <oasis:entry colname="col2"/>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">variable</oasis:entry>  
         <oasis:entry colname="col2">Parameter or emission value</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">1.89</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.5, 0.75, 1.0, 1.25, 1.5, 1.75, 2.0, 2.25, 2.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">4.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula> molecules m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">2.6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>12</mml:mn></mml:msup></mml:math></inline-formula> molecules m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">4.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula> molecules m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mrow><mml:mi>E</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">9 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula> molecules m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (4.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula>–2.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>11</mml:mn></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mrow><mml:mi>E</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>12</mml:mn></mml:msup></mml:math></inline-formula> molecules m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mrow><mml:mi>E</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">8.2 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mn>10</mml:mn></mml:msup></mml:math></inline-formula> molecules m<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3"><caption><p>Simulated range in peak NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> mixing ratios that result from the
different photochemical scenarios using different <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(0.5–2.5). Also shown are the ranges of peak CO and HCHO that result from
emissions of CO and VOCs, respectively.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Chemical species</oasis:entry>  
         <oasis:entry colname="col2">Modelled peak mixing ratio range</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">4.0–24.0 ppbv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">NO</oasis:entry>  
         <oasis:entry colname="col2">1–11.3 ppbv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">3–16.9 ppbv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CO</oasis:entry>  
         <oasis:entry colname="col2">590–820 ppbv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">HCHO</oasis:entry>  
         <oasis:entry colname="col2">6.5–8.1 ppbv</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>In the emission inversion calculations, we represent VOC emissions via ethene
emissions. We selected ethene because it is a sufficiently reactive gas that
is emitted in abundance through the course of anthropogenic activity. Thus,
the adjoint sensitivities to ethene emissions are sufficiently high to allow
the 4D-var system to find adequate solutions for the VOC emission parameter.
Table <xref ref-type="table" rid="Ch1.T2"/> describes the set-up of the photochemical
model for the range of different NO emission scenarios that we investigate
and shows the values of <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>, and, for each species, <inline-formula><mml:math display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula> and
<inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>E</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>. Note that for <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>E</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> the overbar indicates the
mean value of a variable.</p>
      <p>The NO emission scalings shown in Table <xref ref-type="table" rid="Ch1.T2"/> are chosen
to represent a wide range of photochemical conditions and given the VOC
burden in the model, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission scalings 0.5, 0.75 and 1.0
represent NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited conditions, 1.25, 1.5 and 1.75 represent
transitional conditions, and 2.0, 2.25, and 2.5 represent VOC-limited
conditions. The mixing ratios of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> that result from these different NO
emission factors, and the mixing ratios of CO and HCHO that result from the
CO and VOC emissions are all summarised in
Table <xref ref-type="table" rid="Ch1.T3"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><caption><p>A schematic showing how both the a priori and a posteriori emissions
relate to the true emissions of NO and the modelled peak afternoon ozone that
results from these emission variabilities. Note that the same emission
variability is used for all of the anthropogenic chemical species emitted in
the model. The a priori and a posteriori emissions are scaled relative to the
true emissions, and these differences can be characterised as being due to
different emission scaling factors (i.e. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) for the a priori,
a posteriori and true emissions. The solid black, green dashed and red dashed
lines show the truth, a posteriori, and a priori emissions,
respectively.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f02.pdf"/>

        </fig>

</sec>
<sec id="Ch1.S2.SS3">
  <title>Forecasting framework and 4D-variational data assimilation</title>
      <p>Several NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> emissions scenarios are simulated to cover a wide range of
photochemical conditions (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 0.5–2.5). Each emission
scenario is represented mathematically as a forward model,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, which represents the concentrations as a function of
time-evaluated emissions, <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula>. Depending on the scenario, either
pseudo-observations of CO, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, or HCHO are used in various
combinations (see Fig. <xref ref-type="fig" rid="Ch1.F3"/> for a representation of the
ozone pseudo-observations relative to the true state for ozone). In order to
derive the pseudo-observations the model true state is sampled at 3-hourly
intervals in the standard scenarios (used as default unless specified) and at
intervals between 1 and 24 h in scenarios characterising the impact of
observing frequency on prediction error. The sampled species concentrations
are then combined with an additive-noise model to generate the
pseudo-observations, <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula>, represented by

                <disp-formula id="Ch1.E4" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi mathvariant="bold-italic">n</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">n</mml:mi></mml:math></inline-formula> is the noise

                <disp-formula id="Ch1.E5" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi mathvariant="bold-italic">n</mml:mi><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>×</mml:mo><mml:mi mathvariant="italic">β</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="italic">ϵ</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> is the average species concentration
(values shown in Table <xref ref-type="table" rid="Ch1.T4"/>), <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> is the noise scaling
factor, and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">ϵ</mml:mi></mml:math></inline-formula> is a random number with a normalised Gaussian
distribution with a standard deviation of 1 and a mean of 0. The modelled
concentrations for all species and times resulting from <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> can
be represented as a vector, <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">q</mml:mi></mml:math></inline-formula>,

                <disp-formula id="Ch1.E6" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></disp-formula>

          or for specific species, <inline-formula><mml:math display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>, at time <inline-formula><mml:math display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> as <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="bold-italic">z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,

                <disp-formula id="Ch1.E7" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mfenced open="[" close="]"><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mfenced><mml:mi>z</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> can be O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, CO or HCHO. We define a priori emission
scaling factors, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, with specified errors relative to
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi></mml:mrow></mml:math></inline-formula> (Table <xref ref-type="table" rid="Ch1.T5"/> provides a summary of the values of <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> used
for both <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>), which are combined with the
model to yield the a priori model state, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Note
that within our framework the a priori is also the initial guess.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T4"><caption><p>Values of <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> used to calculate
<inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula>. The overbar indicates that this represents the mean value.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">Mixing ratio</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Ozone</oasis:entry>  
         <oasis:entry colname="col2">44.4 ppbv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">CO</oasis:entry>  
         <oasis:entry colname="col2">620 ppbv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">6.5 ppbv</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">HCHO</oasis:entry>  
         <oasis:entry colname="col2">3.9 ppbv</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T5"><caption><p>Values of <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>a</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> (in terms of unitless
emission scaling factor) used in the 4D-variational data assimilation model.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="right"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry rowsep="1" namest="col1" nameend="col3" align="center"><inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry rowsep="1" namest="col5" nameend="col7" align="center"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">NO</oasis:entry>  
         <oasis:entry colname="col2">CO</oasis:entry>  
         <oasis:entry colname="col3">VOC</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">NO</oasis:entry>  
         <oasis:entry colname="col6">CO</oasis:entry>  
         <oasis:entry colname="col7">VOC</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">0.5</oasis:entry>  
         <oasis:entry colname="col2">1.0</oasis:entry>  
         <oasis:entry colname="col3">6.5</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">0.475</oasis:entry>  
         <oasis:entry colname="col6">0.95</oasis:entry>  
         <oasis:entry colname="col7">0.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">0.75</oasis:entry>  
         <oasis:entry colname="col2">–</oasis:entry>  
         <oasis:entry colname="col3">–</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">0.7125</oasis:entry>  
         <oasis:entry colname="col6">–</oasis:entry>  
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.0</oasis:entry>  
         <oasis:entry colname="col2">–</oasis:entry>  
         <oasis:entry colname="col3">–</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">0.95</oasis:entry>  
         <oasis:entry colname="col6">–</oasis:entry>  
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.25</oasis:entry>  
         <oasis:entry colname="col2">–</oasis:entry>  
         <oasis:entry colname="col3">–</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">1.1875</oasis:entry>  
         <oasis:entry colname="col6">–</oasis:entry>  
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.5</oasis:entry>  
         <oasis:entry colname="col2">–</oasis:entry>  
         <oasis:entry colname="col3">–</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">1.425</oasis:entry>  
         <oasis:entry colname="col6">–</oasis:entry>  
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.75</oasis:entry>  
         <oasis:entry colname="col2">–</oasis:entry>  
         <oasis:entry colname="col3">–</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">1.8375</oasis:entry>  
         <oasis:entry colname="col6">–</oasis:entry>  
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2.0</oasis:entry>  
         <oasis:entry colname="col2">–</oasis:entry>  
         <oasis:entry colname="col3">–</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">2.1</oasis:entry>  
         <oasis:entry colname="col6">–</oasis:entry>  
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2.25</oasis:entry>  
         <oasis:entry colname="col2">–</oasis:entry>  
         <oasis:entry colname="col3">–</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">2.3625</oasis:entry>  
         <oasis:entry colname="col6">–</oasis:entry>  
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2.5</oasis:entry>  
         <oasis:entry colname="col2">–</oasis:entry>  
         <oasis:entry colname="col3">–</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5">2.625</oasis:entry>  
         <oasis:entry colname="col6">–</oasis:entry>  
         <oasis:entry colname="col7">–</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>The assimilation is started at the first iteration with the forward model
using the initial guess and is thus described as
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> after one iteration. A cost function,
which is a scalar, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>J</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, is then evaluated:

                <disp-formula specific-use="align" content-type="numbered"><mml:math display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mi>J</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac><mml:mo>(</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo><mml:msup><mml:mo>)</mml:mo><mml:mtext>T</mml:mtext></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>n</mml:mtext><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E8"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:mo>+</mml:mo><mml:mfrac><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:msup><mml:mo>)</mml:mo><mml:mtext>T</mml:mtext></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">a</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the a priori constraint matrix and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the observation error covariance (where the
superscript T indicates the transpose). The 4D-variational data assimilation
method seeks the solution for <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover></mml:math></inline-formula>, that minimises
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>J</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,

                <disp-formula id="Ch1.E9" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:msub><mml:mtext>min</mml:mtext><mml:mi>x</mml:mi></mml:msub><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mi>J</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          such that the gradient of the cost function with respect to <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula> is 0 if
the solution <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover></mml:math></inline-formula> is equal to the true state, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi></mml:mrow></mml:math></inline-formula>, (though
this is never fully achieved):

                <disp-formula id="Ch1.E10" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mi mathvariant="bold">∇</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mi>J</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>n</mml:mtext><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">y</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>a</mml:mtext><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula> is the Jacobian matrix (see Eq. <xref ref-type="disp-formula" rid="Ch1.E15"/>) describing the
forward-model response to perturbations to the emission parameters and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold">∇</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mi>J</mml:mi></mml:mrow></mml:math></inline-formula> is the adjoint
sensitivity <xref ref-type="bibr" rid="bib1.bibx9 bib1.bibx55" id="paren.33"/>, which was calculated by the
Rosenbrock solver <xref ref-type="bibr" rid="bib1.bibx15" id="paren.34"/> and which indicates the sensitivity of
the cost function to the emission parameters. The cost function and its
adjoint sensitivities are passed to the quasi-Newton L-BFGS
algorithm <xref ref-type="bibr" rid="bib1.bibx71" id="paren.35"/>. The L-BFGS algorithm iteratively determines the
optimal state of <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover></mml:math></inline-formula>, that minimises the difference
between the model and observations subject to the a priori constraints.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>A representation of the ozone prototype forecasting framework and
the 4D-variational data assimilation results for scenario OCN with
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.1</mml:mn></mml:mrow></mml:math></inline-formula>. The observation period covers the first 48 h period of the
assimilation, during which time pseudo-observations are made (at a frequency
of every 3 h in this case) and are used within the assimilation. The
observations are used to constrain the emissions of ozone precursors, which
in turn allows the forecasting model to produce the a posteriori ozone
prediction. During the prediction and monitoring period the model true state
now plays the monitoring role allowing comparisons to be made to the ozone
forecast. The a posteriori ozone prediction represents the forecast for ozone
concentrations 1 day in the future. <inline-formula><mml:math display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> represents the a posteriori
prediction model error and <inline-formula><mml:math display="inline"><mml:mi>G</mml:mi></mml:math></inline-formula> represents the a priori and initial-guess
prediction error. The black solid line, red solid line, green dashed line,
and blue diamonds represent the truth, a priori, a posteriori, and
pseudo-observations, respectively.</p></caption>
          <?xmltex \igopts{width=184.942913pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f03.png"/>

        </fig>

      <p>Using the estimated emissions, <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover></mml:math></inline-formula>, the forward model,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, provides the air quality prediction of the ozone
concentration, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mtext>O</mml:mtext><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, on the afternoon of the third
day of the simulation during the prediction and monitoring period. The
relevance of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mtext>O</mml:mtext><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to the prediction and monitoring
period is shown in Fig. <xref ref-type="fig" rid="Ch1.F3"/>.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F2"/> shows how the a priori emissions,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, relate to the true emissions <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi></mml:mrow></mml:math></inline-formula> and the a
posteriori emissions, <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover></mml:math></inline-formula>, after the 4D-variational data
assimilation, as well as the a priori, the true and the a posteriori ozone
levels (i.e. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mtext>O</mml:mtext><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mtext>O</mml:mtext><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mtext>O</mml:mtext><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
respectively). The left panel of Fig. <xref ref-type="fig" rid="Ch1.F2"/> shows the
a priori emission error for NO emissions and the right panel shows the a
posteriori NO emission error. The a posteriori emission parameter error can
be defined more generally as a vector <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover></mml:math></inline-formula>.</p>
      <p><?xmltex \hack{\newpage}?>

                <disp-formula id="Ch1.E11" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>-</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi></mml:mrow></mml:math></disp-formula>

          Figure <xref ref-type="fig" rid="Ch1.F3"/> provides an example representation of the
pseudo-observation ozone prediction, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
relative to the true state, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, during the
prediction and monitoring period on the third day. In
Fig. <xref ref-type="fig" rid="Ch1.F3"/> <inline-formula><mml:math display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> represents the a posteriori ozone
prediction error at time <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>t</mml:mi><mml:mi mathvariant="italic">μ</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>t</mml:mi><mml:mi mathvariant="italic">μ</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is 15:00 LT on day 3 during the prediction and monitoring period),
defined by

                <disp-formula id="Ch1.E12" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi>D</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>,</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mi mathvariant="italic">μ</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi><mml:mo>,</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mi mathvariant="italic">μ</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          In Fig. <xref ref-type="fig" rid="Ch1.F3"/> <inline-formula><mml:math display="inline"><mml:mi>G</mml:mi></mml:math></inline-formula> represents the a priori ozone
prediction error defined by

                <disp-formula id="Ch1.E13" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mi mathvariant="italic">μ</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi><mml:mo>,</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mi mathvariant="italic">μ</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

          The air quality prediction error over the entire prediction and monitoring
period for each of the species, <inline-formula><mml:math display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>, can be defined as a vector,
<inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover></mml:math></inline-formula>:

                <disp-formula id="Ch1.E14" content-type="numbered"><mml:math display="block"><mml:mrow><mml:msub><mml:mfenced open="[" close="]"><mml:msub><mml:mover accent="true"><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mi>z</mml:mi></mml:msub></mml:mfenced><mml:mi>j</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mspace width="0.33em" linebreak="nobreak"/><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">6</mml:mn><mml:mi mathvariant="normal">…</mml:mi><mml:mn>21</mml:mn><mml:mo>,</mml:mo><mml:mn>24</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> is the hour of day on the third day during the prediction and
monitoring period.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <title>Uncertainty analysis</title>
<sec id="Ch1.S2.SS4.SSS1">
  <title>Overview</title>
      <p>The uncertainty analysis has two foci: the evaluation of the performance of
the emissions estimates and an estimation of the a posteriori ozone
prediction error. Note that there is a direct synergy between these two
analyses since uncertainties in the emissions estimate directly impact upon
ozone prediction uncertainty. The diagnostics that we calculate in the
analysis of the emissions uncertainties include the a posteriori emission
parameter error, the emission averaging kernel matrix, and the emission
inversion degrees of freedom of signal.</p>
</sec>
<sec id="Ch1.S2.SS4.SSS2">
  <title>The Jacobian matrix</title>
      <p>The Jacobian matrix can be used to help characterise the variance in
<inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover></mml:math></inline-formula>. Therefore, it is advantageous to
determine <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula>. Within our framework, each element of <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula>
represents the forward-model response, <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, at time <inline-formula><mml:math display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> and for observed species, <inline-formula><mml:math display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>, to perturbations in
emissions of species, <inline-formula><mml:math display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, in the case of the OCN scenario (using
pseudo-observations of ozone, CO, and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>). It is defined by</p>
      <p><?xmltex \hack{\newpage}?>

                  <disp-formula specific-use="align" content-type="numbered"><mml:math display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mi mathvariant="bold">K</mml:mi></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mfenced open="[" close="]"><?xmltex \hack{\hbox\bgroup\fontsize{6.8}{6.8}\selectfont$\displaystyle}?><mml:mtable class="array" columnalign="center center center"><mml:mtr><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd><mml:mtd><mml:mo>.</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">NO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:mtd></mml:mtr></mml:mtable><?xmltex \hack{$\egroup}?></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E15"><mml:mtd/><mml:mtd/><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:mfrac><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="bold">x</mml:mi></mml:mrow></mml:mfrac><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

              where <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula> has dimensions <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:mi>N</mml:mi></mml:mrow></mml:math></inline-formula>. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the number of
species in the emission factor state vector, <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">x</mml:mi></mml:math></inline-formula>, and is thus always 3.
We define <inline-formula><mml:math display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> as the total number of observations for all species:

                  <disp-formula id="Ch1.E16" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mi>y</mml:mi></mml:msub><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            where <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi>t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the number of points in time at which the model
perturbations are sampled and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi>y</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the number of species whose
perturbations are used in the Jacobian. In the case of Eq. (<xref ref-type="disp-formula" rid="Ch1.E15"/>)
<inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> O<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>; therefore, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi>y</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3. <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold-italic">y</mml:mi></mml:math></inline-formula>
includes HCHO in the HCN scenario.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>These plots show the columns of the Jacobian matrix, <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula>,
that correspond to the perturbations of the three observed species in
scenario OCN. Ozone is shown on the left, CO in the middle, and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> on
the right. This Jacobian is for the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>1.25</mml:mn></mml:mrow></mml:math></inline-formula> emission
scenario. The shaded area represents observations made during the night.
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> observations made using visible remote-sensing instruments can only
function during the daytime, so there is no need to include a row in the
Jacobian corresponding to night-time NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> observations. The blue, red,
and green solid lines represent <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mi>Z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mi>Z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mi>Z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, respectively. The <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axes on the left and right represent
the different perturbations to <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f04.pdf"/>

          </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F4"/> plots columns of the Jacobian, and it shows that
ozone is more sensitive to changes in emissions during the afternoon and that
CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> respond to changes in emissions during the rush hour periods.</p>
      <p>The key assumption in using the Jacobian is that changes in the emissions can
be described (see <xref ref-type="bibr" rid="bib1.bibx53" id="text.36"/>) approximately by

                  <disp-formula id="Ch1.E17" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="bold">F</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>)</mml:mo><mml:mo>≈</mml:mo><mml:mi mathvariant="bold">K</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="italic">δ</mml:mi><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

            This assumption has been validated using finite differencing (results not
shown) to compare to solutions derived from the right side of
Eq. (<xref ref-type="disp-formula" rid="Ch1.E17"/>).</p>
</sec>
<sec id="Ch1.S2.SS4.SSS3">
  <title>Emission error characterisation</title>
      <p>We calculate various statistics to determine the emission estimation
performance. First, we determine the a posteriori emission parameter error
covariance, which is defined (see <xref ref-type="bibr" rid="bib1.bibx53" id="text.37"/>) by

                  <disp-formula id="Ch1.E18" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi>E</mml:mi><mml:mfenced close="]" open="["><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">T</mml:mi></mml:msup></mml:mfenced><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">a</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>n</mml:mtext><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mi mathvariant="bold">K</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

            Next, we calculate the emission averaging kernel defined by

                  <disp-formula id="Ch1.E19" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi mathvariant="bold">A</mml:mi><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">a</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mtext>n</mml:mtext><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mi mathvariant="bold">K</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:msubsup><mml:mi mathvariant="bold">S</mml:mi><mml:mi mathvariant="normal">n</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:mi mathvariant="bold">K</mml:mi></mml:mrow></mml:math></disp-formula>

            and the degrees of freedom of signal that is calculated via

                  <disp-formula id="Ch1.E20" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mtext>d.o.f.</mml:mtext><mml:mo>=</mml:mo><mml:mtext>Tr</mml:mtext><mml:mo>(</mml:mo><mml:mi mathvariant="bold">A</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

            where both of these diagnostics provide information on the resolution of the
emission retrieval, i.e. the ability of the estimate to uniquely distinguish
between the emissions of individual species. The notation
<inline-formula><mml:math display="inline"><mml:mrow><mml:mtext>Tr</mml:mtext><mml:mo>(</mml:mo><mml:mi mathvariant="bold">A</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> indicates the trace of a matrix. While the diagonals
of <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold">A</mml:mi></mml:math></inline-formula> represent the sensitivity of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, the
d.o.f. represents the number of separate emission parameters that can be
uniquely retrieved.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Ozone a posteriori prediction errors across the complete range of
parameter space for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (0.5–2.5) on the <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>
(0.1–5) along the <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis with each panel presenting the results from the
three observing scenarios CN, OCN and HCN. The coloured contours represent
the a posteriori prediction error in units of ppbv. The green and red colours
indicate low and high levels of a posteriori ozone prediction error,
respectively.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f05.pdf"/>

          </fig>

</sec>
<sec id="Ch1.S2.SS4.SSS4">
  <title>Ozone prediction error characterisation</title>
      <p>Using the a posteriori emission error, we can determine the a posteriori
ozone prediction error during the prediction period. In order to do this we
need to define a new Jacobian matrix, <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, that defines the forward
photochemical response during the prediction and monitoring period (day 3) to
perturbations in the emissions. Thus, <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> simply
differ because <inline-formula><mml:math display="inline"><mml:mi mathvariant="bold">K</mml:mi></mml:math></inline-formula> describes the model response during the
observation period as opposed to the prediction and monitoring period. Each
element of <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> is <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mi>z</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>t</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> is the index of time denoting when the
model is sampled on the third day. The a posteriori ozone prediction error
covariance for the third day can be determined by

                  <disp-formula id="Ch1.E21" content-type="numbered"><mml:math display="block"><mml:mrow><mml:mi mathvariant="bold">E</mml:mi><mml:mfenced open="[" close="]"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">q</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">T</mml:mi></mml:msup></mml:mfenced><mml:mo>=</mml:mo><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mi mathvariant="bold">E</mml:mi><mml:mfenced close="]" open="["><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:msup><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal">̃</mml:mo></mml:mover><mml:mi mathvariant="normal">T</mml:mi></mml:msup></mml:mfenced><mml:msup><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mi mathvariant="normal">T</mml:mi></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T6" specific-use="star"><caption><p>List and details of all of the experiments carried out as part of
the uncertainty analysis. The experiment details include the observed
species, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> emission factors (see
Table <xref ref-type="table" rid="Ch1.T2"/> for the full list), the observation noise,
<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>, and the observing frequency. The eight different values of <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>
are 0.01, 0.05 , 0.1, 0.25, 0.5, 1.0, 2.5, and 5.0. These fractional errors
are relative to the average species mixing ratios over all of the
photochemical scenarios (see Table <xref ref-type="table" rid="Ch1.T4"/>). The observing noises
are identical for each compound within a particular scenario unless otherwise
stated. All of the results from these experiments are described in Sect. 3.1.
We also include short notes describing other aspects of the experiments. The
table includes a list of the precise sections where the different experiments
are discussed.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.80}[.80]?><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="justify" colwidth="85.358268pt"/>
     <oasis:colspec colnum="2" colname="col2" align="justify" colwidth="79.667717pt"/>
     <oasis:colspec colnum="3" colname="col3" align="justify" colwidth="56.905512pt"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="39.833858pt"/>
     <oasis:colspec colnum="5" colname="col5" align="justify" colwidth="56.905512pt"/>
     <oasis:colspec colnum="6" colname="col6" align="justify" colwidth="105.275197pt"/>
     <oasis:colspec colnum="7" colname="col7" align="justify" colwidth="113.811024pt"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Experiment</oasis:entry>  
         <oasis:entry colname="col2">Section</oasis:entry>  
         <oasis:entry colname="col3">Observed</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">Observation</oasis:entry>  
         <oasis:entry colname="col6">Observing</oasis:entry>  
         <oasis:entry colname="col7">Notes</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">species</oasis:entry>  
         <oasis:entry colname="col4">scenarios</oasis:entry>  
         <oasis:entry colname="col5">noise (<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col6">frequency</oasis:entry>  
         <oasis:entry colname="col7"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">CN</oasis:entry>  
         <oasis:entry colname="col2">First and third subsection of Sect. 3.1.1</oasis:entry>  
         <oasis:entry colname="col3">CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">Nine <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> scenarios (0.5–2.5)</oasis:entry>  
         <oasis:entry colname="col5">Eight <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> values (0.01–5.0)</oasis:entry>  
         <oasis:entry colname="col6">3 h</oasis:entry>  
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">OCN</oasis:entry>  
         <oasis:entry colname="col2">First and third subsection of Sect. 3.1.1</oasis:entry>  
         <oasis:entry colname="col3">Ozone, CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">Nine <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> scenarios<?xmltex \hack{\hfill\break}?>(0.5–2.5)</oasis:entry>  
         <oasis:entry colname="col5">Eight <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> values <?xmltex \hack{\hfill\break}?>(0.01–5.0)</oasis:entry>  
         <oasis:entry colname="col6">3 h</oasis:entry>  
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">HCN</oasis:entry>  
         <oasis:entry colname="col2">First and third subsection of Sect. 3.1.1</oasis:entry>  
         <oasis:entry colname="col3">HCHO, CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">Nine <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> scenarios <?xmltex \hack{\hfill\break}?>(0.5–2.5)</oasis:entry>  
         <oasis:entry colname="col5">Eight <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> values<?xmltex \hack{\hfill\break}?>(0.01–5.0)</oasis:entry>  
         <oasis:entry colname="col6">3 h</oasis:entry>  
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">HOCN</oasis:entry>  
         <oasis:entry colname="col2">First subsection of<?xmltex \hack{\hfill\break}?>Sect. 3.1.1</oasis:entry>  
         <oasis:entry colname="col3">HCHO, ozone, CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">Nine <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> scenarios<?xmltex \hack{\hfill\break}?>(0.5–2.5)</oasis:entry>  
         <oasis:entry colname="col5">Eight <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> values<?xmltex \hack{\hfill\break}?>(0.01–5.0)</oasis:entry>  
         <oasis:entry colname="col6">3 h</oasis:entry>  
         <oasis:entry colname="col7">Results not shown in any figure</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Comparison between<?xmltex \hack{\hfill\break}?>HCN and OCN<?xmltex \hack{\hfill\break}?>(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mtext>HCN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mtext>OCN</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>)</oasis:entry>  
         <oasis:entry colname="col2">Second subsection of Sect. 3.1.1</oasis:entry>  
         <oasis:entry colname="col3">HCHO, ozone, CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">Nine <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> scenarios <?xmltex \hack{\hfill\break}?>(0.5–2.5)</oasis:entry>  
         <oasis:entry colname="col5">Eight <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> values<?xmltex \hack{\hfill\break}?>(0.01–5.0)</oasis:entry>  
         <oasis:entry colname="col6">3 h</oasis:entry>  
         <oasis:entry colname="col7">Three different scenarios tested each using different HCHO observation noise</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Observing frequency<?xmltex \hack{\hfill\break}?>experiment</oasis:entry>  
         <oasis:entry colname="col2">Sect. 3.1.2</oasis:entry>  
         <oasis:entry colname="col3">Ozone, CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">Nine <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> scenarios <?xmltex \hack{\hfill\break}?>(0.5–2.5)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.25</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6">Six frequencies tested: 1, 3, 6, 12, 18, and 24 h</oasis:entry>  
         <oasis:entry colname="col7"/>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Observing time<?xmltex \hack{\hfill\break}?>experiment</oasis:entry>  
         <oasis:entry colname="col2">Sect. 3.1.2</oasis:entry>  
         <oasis:entry colname="col3">Ozone, CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">Nine <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> scenarios<?xmltex \hack{\hfill\break}?>(0.5–2.5)</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.25</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6">3 h</oasis:entry>  
         <oasis:entry colname="col7">16 different scenarios tested; observations are removed at different times in each case</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

</sec>
</sec>
<sec id="Ch1.S2.SS5">
  <title>Summary of experiments</title>
      <p>We describe all of the experiments that we perform for the uncertainty
analysis (Sect.  3.1) in Table <xref ref-type="table" rid="Ch1.T6"/>. In each experiment we
test a range of different observation characteristics using different
parameters. To give an example, for the CN observing scenario we test the
model forecast uncertainties across the nine values of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(i.e. 0.5–2.5 with increments of 0.25) and for eight different levels of
observing error (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.01</mml:mn></mml:mrow></mml:math></inline-formula>–5; equivalent to 1, 5, 10, 25, 50, 100, 250,
and 500 % relative error). Thus, we perform 72 separate tests for this
experiment and for the OCN and HCN scenarios as well. However, for the
experiment comparing HCN and OCN we carry out three separate tests where we
scale HCHO observation noise relative to the other species. We test three
different scalings: 50 % lower, the same, and 50 % higher noise.</p>
      <p>Section 3.2 is dedicated to sensitivity studies using the full 4D-var data
assimilation forecast system. In Sect. 3.2.1 we demonstrate the ability of
the 4D-var data assimilation forecast system to forecast ozone when using the
three observation scenarios CN, OCN, and HCN. For these experiments we use
observations made at 3 h intervals and using <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.1</mml:mn></mml:mrow></mml:math></inline-formula>.</p>
      <p>Next, in Sect. 3.2.2, we define a range of different <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> scenarios in
order to probe the emission solution and ozone forecast sensitivity to the
assumed diurnal emission variability. These alternative <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> scenarios and
the standard emission variability are shown in
Fig. <xref ref-type="fig" rid="Ch1.F1"/>. In each test we perform the 4D-var data
assimilation forecast using the alternative <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> scenario while still
assuming that the standard emission variability is representative of the true
state. We perform this test using the OCN scenario, observing at 3 h
intervals and with <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.1</mml:mn></mml:mrow></mml:math></inline-formula>.</p>
      <p>When conducting the VOC emission inversion, we represent VOC emission
uncertainties as ethene emission uncertainties (rather than a more diverse
range of VOCs). In Sect. 3.2.3 we test that assumption using a sensitivity
analysis by assuming VOC emission errors for ethane instead of ethene. Again,
we perform this test for the OCN scenario, observing at a 3 h frequency and
with <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.1</mml:mn></mml:mrow></mml:math></inline-formula>.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Uncertainty analyses</title>
<sec id="Ch1.S3.SS1.SSS1">
  <?xmltex \opttitle{Assessing observations of CO, NO${}_{2}$, ozone, and HCHO and the influence of observation error}?><title>Assessing observations of CO, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, ozone, and HCHO and the influence of observation error</title>
</sec>
<sec id="Ch1.S3.SS1.SSSx1" specific-use="unnumbered">
  <?xmltex \opttitle{Emission error characterisation and ozone\hack{\break} prediction error}?><title>Emission error characterisation and ozone<?xmltex \hack{\break}?> prediction error</title>
      <p>In this section we examine the
choice of which species to observe in order to best constrain the emissions
and improve the ozone prediction, and we look at the three scenarios CN, OCN,
and HCN in order to do this. Table <xref ref-type="table" rid="Ch1.T6"/> describes the
parameter space we sample in each of these scenarios and it describes other
important aspects of the forecast system set-up, i.e. the values of
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> and the pseudo-observation observing frequency.</p>
      <p>These results include the a posteriori ozone prediction error (calculated by
Eq. <xref ref-type="disp-formula" rid="Ch1.E21"/>) and the a posteriori emission parameter error
(calculated by Eq. <xref ref-type="disp-formula" rid="Ch1.E18"/>). We limit our analysis of the observed species
to ozone, CO, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, and HCHO because these gases are monitored by both
ground stations and satellites.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a posteriori errors across the complete range of
parameter space for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (0.5–2.5) on the <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>
(0.1–5) along the <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis with each panel presenting the results from the
three observing scenarios A–C. The coloured contours represent the a
posteriori error. To allow comparison of the error in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to
the true state, we note that the true state is defined as
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>6.5</mml:mn></mml:mrow></mml:math></inline-formula>. The light blue and green colours indicate low and
high a posteriori error on <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
respectively.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f06.pdf"/>

          </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F5"/> presents the a posteriori ozone
prediction errors across the complete range of parameter space and, in each
panel, the results from the three observing scenarios. All of the scenarios
exhibit similar general behaviour in the derived a posteriori ozone
prediction errors: a first maximum in ozone prediction uncertainty in the
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited scenarios (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>0.5</mml:mn></mml:mrow></mml:math></inline-formula>–0.75), with a consistent
minimum in ozone prediction error in the transition region that is both
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and VOC limited (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>1.0</mml:mn></mml:mrow></mml:math></inline-formula>–1.75) and a second larger
maximum in ozone prediction uncertainty in the VOC-limited regime
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula>–2.5). Scenario CN (observing only CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>)
yields the highest a posteriori ozone prediction uncertainties of the three
scenarios across the range of NO emission scenarios. The inclusion of ozone
and HCHO observations in the OCN and HCN scenarios, respectively, reduces the
a posteriori ozone prediction uncertainties compared to those from the CN
scenario. Scenarios OCN and HCN both show significant improvement in the
VOC-limited emission scenarios (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>2.0</mml:mn></mml:mrow></mml:math></inline-formula>–2.5), with each
outperforming the CN scenario by up to 2.4 ppbv. Scenarios OCN and HCN
diverge from one another when <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>2.0</mml:mn></mml:mrow></mml:math></inline-formula>, which represents the
lowest <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> factor that is still VOC limited. In this case,
scenario OCN outperforms scenario HCN by up to 1.4 ppbv. Under
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited conditions (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>0.5</mml:mn></mml:mrow></mml:math></inline-formula>–1.0), the OCN scenario a
posteriori ozone prediction errors show a strong improvement relative to the
CN scenario (2.6 ppbv) and a slightly more modest improvement relative to
the HCN scenario (1.9 ppbv).</p>
      <p>We will now focus on explaining these differences in the a posteriori ozone
prediction error highlighted above. To gain further insight into this
behaviour, Figs. <xref ref-type="fig" rid="Ch1.F6"/> and <xref ref-type="fig" rid="Ch1.F7"/> show the a
posteriori error for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Note that the
a posteriori error for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (not shown) is invariant with
respect to the photochemical regime and is therefore unable to explain any of
the observed variability in ozone prediction error over varying
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a posteriori errors across the complete range of
parameter space for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (0.5–2.5) on the <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>
(0.1–5) along the <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis with each panel presenting the results from the
three observing scenarios CN, OCN and HCN. The coloured contours represent
the a posteriori error. To allow comparison of the error in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mtext>NO</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> to
the true state, we note that the true state is defined as the <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis value.
The light blue and green colours indicate low and high a posteriori error on
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, respectively.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f07.pdf"/>

          </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F6"/> shows that scenario HCN is able to reduce
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a posteriori errors over the largest range of NO emission
scenarios, followed by scenario OCN and scenario CN. This reduction in VOC
emission uncertainty in scenario HCN explains why this scenario shows reduced
a posteriori ozone prediction error (by up to 2.4 ppbv) compared to the CN
scenario under VOC-limited conditions. Despite HCHO observations overall
providing a better constraint on VOC emission uncertainties under all
conditions, this improved constraint only leads to lower a posteriori ozone
prediction error compared to the OCN scenario in the transition region
regimes (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>1.0</mml:mn></mml:mrow></mml:math></inline-formula>–1.75) (see Fig. <xref ref-type="fig" rid="Ch1.F8"/>,
central plot) and under the most VOC-limited conditions
(<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 2.0). The exception to this behaviour occurs at
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>2.0</mml:mn></mml:mrow></mml:math></inline-formula>; despite the HCN scenario showing lower
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> a posteriori errors compared to the OCN scenario, the HCN
scenario shows higher a posteriori ozone prediction error. This occurs
because the a posteriori ozone prediction error is also sensitive to the a
posteriori NO emission uncertainties under VOC-limited conditions, and ozone
is better than HCHO at constraining the NO emission uncertainties.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p>The difference between the scenario HCN and OCN a posteriori ozone
prediction error for a range of assumed HCHO observing error scenarios. In
all of the previous analyses and results, <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> has been identical for all
observed species, but in this sensitivity analysis we scale <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> for HCHO
independently from the other observed species. From left to right HCHO
observing errors are assumed to be 50, 100, and 150 % of the observing
error for the other species. Thus, the right-hand panel indicates a scenario
with HCHO observations of poorer quality compared to the other species and
represents the difference in ozone prediction error between the right and
middle panels of Fig. <xref ref-type="fig" rid="Ch1.F5"/>; the left panel
indicates a rather optimistic case with assumed HCHO observation errors less
than the other observed species errors. The dark red and dark blue contour
colours indicate the negative and positive differences between the scenario
HCN and OCN a posteriori ozone prediction error,
respectively.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f08.pdf"/>

          </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F7"/> illustrates that the OCN scenario exhibits the
smallest a posteriori NO emission parameter errors compared to any of the
other observing scenarios. This is particularly pronounced under VOC-limited
and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited conditions. Therefore, ozone is better able to constrain
NO emission uncertainties as compared with HCHO under all photochemical
conditions, which is because ozone is always more sensitive to changes in NO
emissions than HCHO. Note, in the case of VOC-limited conditions, ozone is
anticorrelated with NO emissions. As a direct result of this, the OCN
scenario ozone a posteriori prediction errors are 2.5 and 1.9 ppbv lower
than the CN and HCN scenarios, respectively, while under NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited
conditions. Under VOC-limited conditions, the OCN scenario shows a posteriori
ozone prediction errors that are 2.4 ppbv lower than for the CN scenario.
The improved estimation of the NO emissions in the OCN scenario compared to
the HCN scenario only leads to reduced a posteriori ozone prediction errors
(by 1.4 ppbv) for the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>2.0</mml:mn></mml:mrow></mml:math></inline-formula> emission case (see
Fig. <xref ref-type="fig" rid="Ch1.F8"/>). This one exception is because VOC emission errors
dominate the ozone prediction uncertainty for the other VOC-limited cases.</p>
      <p>We now briefly explore the benefits of combining all four of the observed
species (CO,NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, ozone, and HCHO) to make the HOCN scenario. This
scenario can improve ozone prediction errors by up to 2.9 and 3.1 ppbv under
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and VOC-limited conditions, respectively, compared to the CN
scenario. Combining ozone and HCHO observations slightly improves ozone
prediction errors by up to 0.3 and 0.8 ppbv under NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and VOC-limited
conditions, respectively, compared to the OCN scenario. The differences
between the ozone and HCHO combined scenario and the OCN scenario under
VOC-limited conditions further highlight the potential for HCHO observations
to improve ozone prediction errors under the most VOC-limited conditions.</p>
      <p>Until now, we have not directly discussed the impact of CO observations or of
the resolution of CO emission uncertainties within the assimilation
framework. We do not show a figure here, but a posteriori CO emission
uncertainties are almost invariant with respect to photochemical regime and
to the observing scenario (CN, OCN, or HCN). However, the a posteriori CO
emission uncertainties increase from <inline-formula><mml:math display="inline"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> to 0.1 as the
observing noise increases from <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.01</mml:mn></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>1.0</mml:mn></mml:mrow></mml:math></inline-formula>, respectively.
According to the sensitivity of ozone to <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the Jacobian
<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, these relatively low levels of CO emission uncertainty would
only lead to perturbations in ozone of 0.5 ppbv at most. For the case with
the highest amount of noise, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>5.0</mml:mn></mml:mrow></mml:math></inline-formula>, the a posteriori CO emission
uncertainty reaches 1.1. Again, using <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">K</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, we can estimate that
this larger level of CO emission uncertainty could lead to about a 5 ppbv
perturbation in ozone. Therefore, only the <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>5.0</mml:mn></mml:mrow></mml:math></inline-formula> noise scenario leads
to large enough a posteriori CO emission uncertainties that can have a
significant effect on a posteriori ozone prediction errors.</p>
</sec>
<sec id="Ch1.S3.SS1.SSSx2" specific-use="unnumbered">
  <title>Sensitivity test for degraded HCHO observations</title>
      <p>The standard HCN scenario described above assumes that the relative observing
errors for HCHO are the same as for the other gases. However, within the
context of satellite observations, the quality of HCHO observations are
likely to be degraded relative to ozone, for instance. This is likely due to
the relative magnitude of the absorption cross-sections and interferences
from other absorbing gases. We therefore perform a sensitivity test whereby
we apply an upward scaling factor to the <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> of HCHO to increase it by
50 % relative to the other observed gases in the standard HCN scenario (see
the experiment “comparison between HCN and OCN” in
Table <xref ref-type="table" rid="Ch1.T6"/> for further details). Figure <xref ref-type="fig" rid="Ch1.F8"/>
shows that scenario HCN only has lower a posteriori ozone prediction
uncertainties over the full range of NO emission scenarios under the
optimistic scenario of lower HCHO observation uncertainties (<inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> of HCHO
is set to be 50 % lower than that of ozone) and that in the other
scenarios, which we assume would be closer to reality, scenario HCN only
outperforms scenario OCN in the transition region and for the most
VOC-sensitive regimes. Under the assumptions of lower ozone observing
uncertainty, OCN out performs scenario HCN in the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>- and VOC-limited
regimes by up to 1.9 ppbv.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p>The diagonal of the emission averaging kernel for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
in the lower row and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the upper row. Each column
represents a different observing scenario (CN, OCN, and HCN). The <inline-formula><mml:math display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis
denotes the varying value of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and the <inline-formula><mml:math display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis shows <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>
(0.1–5). The contours represent the varying magnitude of the diagonal of the
averaging kernel matrix from 0 to 1. The purple and light blue contour
colours indicate high and low values of the diagonal of the averaging kernel
matrix, respectively.</p></caption>
            <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f09.pdf"/>

          </fig>

</sec>
<sec id="Ch1.S3.SS1.SSSx3" specific-use="unnumbered">
  <title>Averaging kernel and degrees of freedom of signal</title>
      <p>Following from Sect. “Emission error characterisation and ozone prediction
error”, we now characterise the emission estimate
using the emission averaging kernel and degrees of freedom of signal
diagnostics. The emission averaging kernel (Eq. <xref ref-type="disp-formula" rid="Ch1.E19"/>) represents the
sensitivity of the retrieved emission parameters along the diagonal, i.e. for
a particular species, <inline-formula><mml:math display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>, to changes in the real emission parameter for
species, <inline-formula><mml:math display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>. This analysis is carried out for the CN, OCN, and HCN scenarios
(refer to Table <xref ref-type="table" rid="Ch1.T6"/> for details).
Figure <xref ref-type="fig" rid="Ch1.F9"/> shows the respective diagonals of the emission
averaging kernel (for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) varying in a
manner consistent with the a posteriori parameter errors as shown in
Figs. <xref ref-type="fig" rid="Ch1.F6"/> and <xref ref-type="fig" rid="Ch1.F7"/>. A comparison of the lower
panels indicates that the NO emission parameter estimate using the OCN
observing scenario is more sensitive to the true state of the NO emission
parameter under both NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited and VOC-limited conditions than any of
the other observing scenarios. The top panels show that the VOC parameter
estimate shows the highest sensitivity to the true state of the VOC emission
parameter using the HCN observing scenario.</p>
      <p>Consistent with the averaging kernel, the emission inversion degrees of
freedom of signal (see Eq. <xref ref-type="disp-formula" rid="Ch1.E20"/>, results not shown) indicates that the
HCN scenario is better able to retrieve and resolve the three separate
emission parameters compared to the OCN scenario. This is because HCHO
provides a better constraint on VOC emissions over a wider range of
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula>. However, ozone in general constrains ozone
precursor emissions across a wider variety of emission parameters,
specifically for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, which allows ozone observations to yield
better a posteriori ozone prediction errors. The OCN scenario shows a
decrease in the degrees of the freedom of signal under NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited
conditions due to the lack of sensitivity of the retrieval to the VOC
emission parameter when using these observations.</p>
</sec>
<sec id="Ch1.S3.SS1.SSS2">
  <title>Observing time and observing frequency</title>
      <p>We now examine the sensitivity of the ozone prediction error to the removal
of observations at different times during the day. (Refer to the observing
time experiment in Table <xref ref-type="table" rid="Ch1.T6"/> for details.) Since the first
observations are made at 00:00 LT, this means that, in practice, we run our
tests by removing observations at 00:00, 03:00, 06:00 (all local time) and so
on until each observation within the entire observing window (the first 2
days of simulation) has been tested.</p>
      <p>Figure <xref ref-type="fig" rid="Ch1.F10"/> shows that a posteriori ozone prediction
errors are most sensitive to the removal of observations during the day
particularly during the high-emission periods in the morning and afternoon
rush hours and particularly so during the period of elevated ozone in the
afternoon. The timing and magnitude of the sensitivity and its peak to
observation removal varies according to the nine NO emission scenarios as
well. In the more NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited scenarios, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>0.5</mml:mn></mml:mrow></mml:math></inline-formula>–1.0,
the sensitivity to observation removal is distributed relatively evenly over
the entire day. In the VOC-limited regimes, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>1.75</mml:mn></mml:mrow></mml:math></inline-formula>–2.5,
the sensitivity to observation removal is more tightly distributed within the
afternoon period and peaks between 15:00 and 18:00 LT even showing a broad
maximum out to 20:00 LT under the most VOC-limited conditions. The temporal
variability in the maximum sensitivity to observation removal with changing
photochemical regime is due to the timing of afternoon peak ozone
concentrations. This is because across all of the photochemical regimes
maxima in ozone sensitivity to perturbations in emissions coincide with the
daytime peak ozone concentration (see Fig. <xref ref-type="fig" rid="Ch1.F4"/>). Observations
made during these key periods are therefore better able to constrain the
emissions uncertainties. Ozone concentrations peak later in the afternoon
under more VOC-limited conditions compared to the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited
conditions, thus explaining some of the variability in maximum sensitivity to
observation removal with changing photochemical regimes.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10"><caption><p>The absolute increase in a posteriori ozone prediction error between
scenario OCN with <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.25</mml:mn></mml:mrow></mml:math></inline-formula> and the same scenario with observations
removed form specific times over the course of two days (perturbed case),
e.g. 15:00 LT on the second day indicates that no observations were included
in the analytical model calculation of a posteriori ozone prediction error
for the perturbed case from 15:00 LT on the second day. The green and black
colours indicate low and high values, respectively.</p></caption>
            <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f10.pdf"/>

          </fig>

      <p>Next, we address how observing frequency will affect the ozone prediction
error. We run a series of sensitivity tests using a variety of observing
frequencies ranging from once a day to once every hour.
Table <xref ref-type="table" rid="Ch1.T6"/> provides a complete description of the observing
frequency experiment. We carry out these tests across the full range of NO
emission scenarios (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>0.5</mml:mn></mml:mrow></mml:math></inline-formula>–2.5 with increments of 0.25) and
with <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.25</mml:mn></mml:mrow></mml:math></inline-formula>. Figure <xref ref-type="fig" rid="Ch1.F11"/> shows how a posteriori
ozone prediction errors vary with changing observing frequency. Increasing
observing frequency causes the largest decreases in a posteriori ozone
prediction uncertainty in the VOC-limited regime and to a lesser extent in
the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited regime due to the sensitivity of ozone prediction error
to unresolved emission parameter errors in those regimes.</p>
</sec>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Supporting sensitivity analyses</title>
<sec id="Ch1.S3.SS2.SSS1">
  <title>4D-variational data assimilation</title>
      <p>We now demonstrate the performance of the 4D-variational data assimilation.
Our 4D-var framework solves the non-linear estimation problem in that it
optimises the ozone precursor emissions and then estimates a posteriori ozone
mixing ratios (the forecast). We run the system across the full range of
photochemical conditions (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>0.5</mml:mn></mml:mrow></mml:math></inline-formula>–2.5) and for the CN, OCN and
HCN scenarios whilst assuming low levels of observational error (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.1</mml:mn></mml:mrow></mml:math></inline-formula>)
represented in the observation error covariance matrix.</p>
      <p>The results shown in Table <xref ref-type="table" rid="Ch1.T7"/> indicate that scenarios
OCN and HCN yield acceptable prediction error under these idealised
conditions (<inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.1</mml:mn></mml:mrow></mml:math></inline-formula>) within this prototype framework for all
photochemical conditions. The more limited success of scenario CN
(observations of CO and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>) is due to the lower sensitivity of CO and
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> observations to the emissions of VOCs across all NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> emission
scenarios and due to the low sensitivity of CO observations to the emissions
of NO. The magnitude of the adjoint sensitivities guides the L-BFGS
algorithm <xref ref-type="bibr" rid="bib1.bibx71" id="paren.38"/> to the global minimum. In cases where the adjoint
sensitivities are low, e.g. in VOC-limited conditions using the CN scenario,
the optimisation routine may only be able to find a non-global minimum, which
leads to larger a posteriori emission factor errors,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>-</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi></mml:mrow></mml:math></inline-formula>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T7" specific-use="star"><caption><p>Initial peak ozone predictions, true-state peak ozone, initial guess
ozone prediction error, and prediction error across the full range of
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is in terms of unitless emission scaling
factor) and the three observing scenarios CN, OCN and HCN. The ozone values
and absolute differences in ozone mixing ratio are listed for 15:00 LT
during the final day of the prediction model. <inline-formula><mml:math display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> represents the a posteriori
prediction model error and <inline-formula><mml:math display="inline"><mml:mi>G</mml:mi></mml:math></inline-formula> represents the a priori and initial guess
prediction error (see Fig. <xref ref-type="fig" rid="Ch1.F3"/> for more details).</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="right"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> Scenario</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mtext>a</mml:mtext></mml:msub><mml:mo>,</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mi mathvariant="italic">μ</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (ppbv)</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi><mml:mo>,</mml:mo><mml:msup><mml:mi>t</mml:mi><mml:mi mathvariant="normal">µ</mml:mi></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (ppbv)</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mi>G</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> (ppbv)</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> (ppbv)</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula> (ppbv)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4">(ppbv)</oasis:entry>  
         <oasis:entry colname="col5">scenario CN</oasis:entry>  
         <oasis:entry colname="col6">scenario OCN</oasis:entry>  
         <oasis:entry colname="col7">scenario HCN</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">0.5</oasis:entry>  
         <oasis:entry colname="col2">72.7</oasis:entry>  
         <oasis:entry colname="col3">79.3</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>6.6</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>6.3</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.4</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.0</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">0.75</oasis:entry>  
         <oasis:entry colname="col2">81.3</oasis:entry>  
         <oasis:entry colname="col3">89.7</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8.4</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8.3</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.5</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.0</oasis:entry>  
         <oasis:entry colname="col2">85.2</oasis:entry>  
         <oasis:entry colname="col3">96.3</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>11.1</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.5</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.6</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.25</oasis:entry>  
         <oasis:entry colname="col2">85.5</oasis:entry>  
         <oasis:entry colname="col3">100.3</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>15.1</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.3</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.6</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.3</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.5</oasis:entry>  
         <oasis:entry colname="col2">79.7</oasis:entry>  
         <oasis:entry colname="col3">101.5</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>21.8</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.2</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.5</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.75</oasis:entry>  
         <oasis:entry colname="col2">66.1</oasis:entry>  
         <oasis:entry colname="col3">98.7</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>32.6</oasis:entry>  
         <oasis:entry colname="col5">2.2</oasis:entry>  
         <oasis:entry colname="col6">0.3</oasis:entry>  
         <oasis:entry colname="col7">0.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2.0</oasis:entry>  
         <oasis:entry colname="col2">52.8</oasis:entry>  
         <oasis:entry colname="col3">89.0</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>36.2</oasis:entry>  
         <oasis:entry colname="col5">1.9</oasis:entry>  
         <oasis:entry colname="col6">0.3</oasis:entry>  
         <oasis:entry colname="col7">0.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2.25</oasis:entry>  
         <oasis:entry colname="col2">43.6</oasis:entry>  
         <oasis:entry colname="col3">73.0</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>29.4</oasis:entry>  
         <oasis:entry colname="col5">1.4</oasis:entry>  
         <oasis:entry colname="col6">0.3</oasis:entry>  
         <oasis:entry colname="col7">0.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2.5</oasis:entry>  
         <oasis:entry colname="col2">37.1</oasis:entry>  
         <oasis:entry colname="col3">58.8</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>21.7</oasis:entry>  
         <oasis:entry colname="col5">1.0</oasis:entry>  
         <oasis:entry colname="col6">0.3</oasis:entry>  
         <oasis:entry colname="col7">0.2</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>Table <xref ref-type="table" rid="Ch1.T7"/> indicates that there is variability in a
posteriori peak ozone prediction error over changing photochemical regime and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> for each observing scenario CN, OCN, and HCN. This
variability with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is due in part to the variations in
modelled ozone sensitivity to the different ozone precursor emission
parameters, <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and
the a posteriori emission parameter errors (i.e. <inline-formula><mml:math display="inline"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mo>-</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi></mml:mrow></mml:math></inline-formula>).
Generally, the large sensitivity of predicted ozone to the emissions of ozone
precursors, <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>q</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,
combined with unresolved ozone precursor emission parameter errors can lead
to larger a posteriori peak ozone prediction errors. For instance, in the
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited regimes (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>0.5</mml:mn></mml:mrow></mml:math></inline-formula>–1.0) large residual error in
the element of <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover></mml:math></inline-formula> corresponding to NO emissions would lead to
large a posteriori ozone errors.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T8"><caption><p>The a posteriori <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> error resulting from the
4D-variational data assimilation. The table shows the variability in the a
posteriori VOC emission error (in terms of unitless emission scaling factor)
both with observing scenario and NO emission factor. Errors are represented
as absolute errors of <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="4">
     <oasis:colspec colnum="1" colname="col1" align="right"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry rowsep="1" namest="col2" nameend="col4" align="center"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>–<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"><inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">Scenario CN</oasis:entry>  
         <oasis:entry colname="col3">Scenario OCN</oasis:entry>  
         <oasis:entry colname="col4">Scenario HCN</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">0.5</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>6.4</oasis:entry>  
         <oasis:entry colname="col3">0.40</oasis:entry>  
         <oasis:entry colname="col4">8.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">0.75</oasis:entry>  
         <oasis:entry colname="col2">9.1</oasis:entry>  
         <oasis:entry colname="col3">0.33</oasis:entry>  
         <oasis:entry colname="col4">5.0 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.0</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.7</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.01</oasis:entry>  
         <oasis:entry colname="col4">3.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.25</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.6</oasis:entry>  
         <oasis:entry colname="col3">9.87</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.5</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.7</oasis:entry>  
         <oasis:entry colname="col3">2.71</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.6 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">1.75</oasis:entry>  
         <oasis:entry colname="col2">0.77</oasis:entry>  
         <oasis:entry colname="col3">0.21</oasis:entry>  
         <oasis:entry colname="col4">2.4 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2.0</oasis:entry>  
         <oasis:entry colname="col2">0.54</oasis:entry>  
         <oasis:entry colname="col3">0.20</oasis:entry>  
         <oasis:entry colname="col4">3.3 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2.25</oasis:entry>  
         <oasis:entry colname="col2">0.40</oasis:entry>  
         <oasis:entry colname="col3">0.18</oasis:entry>  
         <oasis:entry colname="col4">4.5 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2.5</oasis:entry>  
         <oasis:entry colname="col2">0.35</oasis:entry>  
         <oasis:entry colname="col3">0.18</oasis:entry>  
         <oasis:entry colname="col4">4.8 <inline-formula><mml:math display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>One example of this phenomenon occurs in the case of photochemically
VOC-limited scenarios (i.e. <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>1.75</mml:mn></mml:mrow></mml:math></inline-formula>–2.5).
Table <xref ref-type="table" rid="Ch1.T8"/> shows the variability in a posteriori VOC emission
errors with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and observing scenario. For observing scenario
CN there is a large unresolved error in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(Table <xref ref-type="table" rid="Ch1.T8"/>) as in this case the size of the adjoint
sensitivities is insufficient to guide the L-BFGS algorithm to the global
minimum, and the solutions represent local minima. This leads to a larger a
posteriori ozone prediction error as compared to scenarios OCN and HCN (see
Table <xref ref-type="table" rid="Ch1.T7"/>), which are better able to resolve errors in
VOC emissions.</p>
      <p>There are also examples where ozone precursor emissions are poorly resolved,
but this has only minimal impact on the ozone prediction error, <inline-formula><mml:math display="inline"><mml:mi>D</mml:mi></mml:math></inline-formula>. This
occurs for the OCN scenario when <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mtext>NO</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> ranges from 1.25 to 1.5. For
these cases the unresolved error in <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mtext>VOC</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is larger than for many
other situations. Again, this occurs because the L-BFGS algorithm is only
able to find a local minimum. However, in these instances, the relatively low
sensitivity of ozone to <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mtext>VOC</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> means that the resulting ozone
prediction errors are relatively low as well.</p>
      <p>Thus, there is a rather complex set of factors interacting to cause these
resulting a posteriori prediction errors, and the analysis of the results is
limited to identifying relationships between the observing scenario, the
photochemical regime, the adjoint sensitivities and the resulting ozone a
posteriori prediction error. This demonstrates the utility of the analytical
model in allowing a far more in-depth analysis. Overall, the 4D-variational
data assimilation framework seems capable of resolving emission uncertainties
and in turn reducing ozone prediction error. This successful demonstration of
the framework is a necessary but not sufficient condition for systems based
upon more complex photochemical models to have ozone predictive skill.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS2">
  <title>Examining day-to-day variability and probing emission solution sensitivity to diurnal emission variability</title>
      <p>We investigate the sensitivity of the forward photochemical model ozone
mixing ratios, obtained via the 4D-var ozone prediction and the 4D-var
emissions estimate, to a range of assumed emission diurnal profiles. We use
the following profiles selected arbitrarily to test the model sensitivity:
constant, sine wave, square wave, and offsets of the existing profile by 1
and 2 h shifts both forward and backward in time (see
Fig. <xref ref-type="fig" rid="Ch1.F1"/>). These alternative emission profiles are
taken to represent the new true state, <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mi mathvariant="bold-italic">t</mml:mi></mml:mrow></mml:math></inline-formula>, (using
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>0.75</mml:mn></mml:mrow></mml:math></inline-formula>) and are used to generate the pseudo-observations
(using <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.1</mml:mn></mml:mrow></mml:math></inline-formula>). We then attempt the assimilation using the
pseudo-observations generated from the alternative emission scenarios whilst
assuming that the emissions temporal variability is the standard variability.
The alternate emission profiles test the robustness of the 4D-variational
data assimilation method to diurnal uncertainty in the emissions.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11"><caption><p>The a posteriori ozone prediction error for a variety of observation
frequency scenarios ranging from an observing frequency of 1 h to once per
day. These were calculated for scenario OCN with <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>0.25</mml:mn></mml:mrow></mml:math></inline-formula>. The green and
red colours indicate low and high levels of a posteriori ozone prediction
error, respectively.</p></caption>
            <?xmltex \igopts{width=184.942913pt}?><graphic xlink:href="https://acp.copernicus.org/articles/15/10645/2015/acp-15-10645-2015-f11.pdf"/>

          </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T9" specific-use="star"><caption><p>Results from a study exploring the sensitivity of the 4D-variational
data assimilation forecast of peak ozone to varying assumptions regarding,
<inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, the diurnal variability in ozone precursor emissions. Note that in
each scenario the cumulative daily emission burden remains constant for each
scenario and thus each scenario has identical <inline-formula><mml:math display="inline"><mml:mover accent="true"><mml:mrow><mml:mi>E</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>. The overbar
indicates that this represents the mean value. The table shows (in ppbv) the
modelled ozone for each alternative <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> scenario, the differences in
true-state peak ozone between these alternative <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> scenarios and the
standard <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> scenario, and the absolute errors of the a posteriori ozone
predictions of these alternative <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> scenarios relative to both the
standard and alternative <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> scenario true states. All of the ozone mixing
ratios are listed for 15:00 LT during the final day of the prediction and
monitoring period.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Assumed <inline-formula><mml:math display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">Alternative</oasis:entry>  
         <oasis:entry colname="col3">Alternative emission</oasis:entry>  
         <oasis:entry colname="col4">Alternative ozone</oasis:entry>  
         <oasis:entry colname="col5">Alternative</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">scenario</oasis:entry>  
         <oasis:entry colname="col2">emission</oasis:entry>  
         <oasis:entry colname="col3">scenario true state</oasis:entry>  
         <oasis:entry colname="col4">prediction</oasis:entry>  
         <oasis:entry colname="col5">ozone prediction</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">scenario</oasis:entry>  
         <oasis:entry colname="col3">– standard emission</oasis:entry>  
         <oasis:entry colname="col4">– standard true</oasis:entry>  
         <oasis:entry colname="col5">– alternative</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">(ppbv)</oasis:entry>  
         <oasis:entry colname="col3">scenario true</oasis:entry>  
         <oasis:entry colname="col4">state (ppbv)</oasis:entry>  
         <oasis:entry colname="col5">true state (ppbv)</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3">state (ppbv)</oasis:entry>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Constant</oasis:entry>  
         <oasis:entry colname="col2">92.5</oasis:entry>  
         <oasis:entry colname="col3">2.8</oasis:entry>  
         <oasis:entry colname="col4">4.0</oasis:entry>  
         <oasis:entry colname="col5">0.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Sine wave</oasis:entry>  
         <oasis:entry colname="col2">97.6</oasis:entry>  
         <oasis:entry colname="col3">7.9</oasis:entry>  
         <oasis:entry colname="col4">8.8</oasis:entry>  
         <oasis:entry colname="col5">0.5</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Saw-tooth</oasis:entry>  
         <oasis:entry colname="col2">100.3</oasis:entry>  
         <oasis:entry colname="col3">10.6</oasis:entry>  
         <oasis:entry colname="col4">9.7</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Offset <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1</oasis:entry>  
         <oasis:entry colname="col2">93.8</oasis:entry>  
         <oasis:entry colname="col3">4.2</oasis:entry>  
         <oasis:entry colname="col4">4.7</oasis:entry>  
         <oasis:entry colname="col5">0.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Offset <inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2</oasis:entry>  
         <oasis:entry colname="col2">98.9</oasis:entry>  
         <oasis:entry colname="col3">9.0</oasis:entry>  
         <oasis:entry colname="col4">9.2</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Offset <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>1</oasis:entry>  
         <oasis:entry colname="col2">86.2</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.5</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>4.9</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.4</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Offset <inline-formula><mml:math display="inline"><mml:mo>+</mml:mo></mml:math></inline-formula>2</oasis:entry>  
         <oasis:entry colname="col2">83.5</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>6.2</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>8.6</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.4</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>Table <xref ref-type="table" rid="Ch1.T9"/> indicates that the forward model shows peak
ozone mixing ratios diverging from the base case run (standard assumed
emission variability with <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>0.75</mml:mn></mml:mrow></mml:math></inline-formula>) by up to 10.6 ppbv and
that the forward-model ozone mixing ratios are sensitive to the assumption of
the diurnal emission variability. In addition, Table <xref ref-type="table" rid="Ch1.T9"/>
shows that the 4D-variational data assimilation is able to achieve a
posteriori peak ozone prediction errors of up to 2.4 ppbv relative to the
true state, as defined by the perturbed scenario, despite using the
unperturbed diurnal emission scenario as its emission variability. Although
we only show the differences in the maximum ozone mixing ratios, this
behaviour is reproduced in the ozone mixing ratios at other times during the
sunlit day. This further confirms our general findings from these tests.
Despite the relative success of the a posteriori peak ozone prediction (only
a maximum ozone prediction error of 2.4 ppbv) under these more challenging
conditions, the assimilation performs poorly in terms of the a posteriori
emission factor error. Errors range up to 0.46 (18–92 %), 0.17 (17 %),
and 7.0 (108 %) for <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">CO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, and
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (relative to true scaling factors of 0.5–5.0, 1.0, and
6.5, respectively), and thus emission inversion success is strongly affected
by errors in the assumed diurnal variability in ozone precursor emissions. In
summary, we demonstrate forward-model ozone sensitivity to perturbations in
the diurnal variability in ozone precursor emissions, relative insensitivity
of the 4D-variational data assimilation a posteriori prediction error to
mismatches in the assumed versus observed diurnal variability in ozone
precursor emissions, and sensitivity of the emissions inversion success to
mismatches in the assumed versus true emissions variability.</p>
</sec>
<sec id="Ch1.S3.SS2.SSS3">
  <title>Emission inversion and ozone predictive skill sensitivity to VOC species
selection</title>
      <p>We conducted a sensitivity test whereby we represent VOC emission
uncertainties with uncertainties in the emission of ethane, which is a less
reactive VOC compared to ethene. We found that the VOC emission inversion is
severely degraded by building the Jacobian by perturbing
<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">ethane</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> as opposed to <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">ethene</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> across the three
scenarios. The a posteriori <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> parameter error relaxes to our
chosen a priori of 1.5 to within one significant figure for most of the
scenarios explored. However, this does not affect ozone prediction error
since the degraded VOC emission uncertainty is mitigated by the lower
reactivity of ethane compared to ethene. As a result, the sensitivity of
ozone to that uncertainty is therefore lower.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Discussion and conclusions</title>
      <p>We addressed a set of key questions to determine how characteristics of
observations of ozone and its precursors affect one's ability to constrain
ozone precursor emissions and consequently to predict ozone when using an
idealised prognostic air quality model coupled to a data assimilation
framework. These questions consisted of which species to observe, how well to
observe them, how often to make observations, when to make them during the
diurnal cycle, and how long to observe before making a prediction. Further to
this, we were interested in how the answers to these questions changed
according to varying photochemical regimes (from NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">x</mml:mi></mml:msub></mml:math></inline-formula>- to
VOC-limited conditions for ozone formation). These questions are relevant
to determining, in a very coarse way, how the various observing platforms
(e.g. LEO and GEO satellites)
and ground monitoring networks are able to support air quality research and forecasting.</p>
      <p>We used a framework consisting of a photochemical box model
using idealised meteorology, its adjoint, and a 4D-variational data assimilation system set-up
to constrain ozone precursor emission uncertainties (NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>, CO, and VOCs). The photochemical
box model used idealised meteorology that represented stagnant summer weather conditions.
Using linear analysis to assess the framework's prediction uncertainties, we carried out a series
of sensitivity analyses to test the performance of the forecasting framework under a range of different
observing scenarios. This consisted of using various sets of pseudo-observations. We examined the effect
of changing which four species were observed (CO, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
and HCHO, CO, and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>), of varying the observation noise, of changing the observing frequency,
and of changing the time during the day when observations are made.</p>
      <p>We were able to demonstrate that the 4D-var framework was able to constrain
ozone precursor emissions and consequently that it was able to reduce ozone
prediction uncertainties and provide an adequate ozone forecast under the
idealised conditions that we used. This therefore demonstrated our
framework's relevance to future air quality forecasting systems that might
utilise state of the art assimilation and observations made using either the
ground station network or from orbiting satellites. Clearly, more
difficulties and challenges remain before such a framework can be used in a
real-world setting, such as how to incorporate averaging kernels of satellite
retrievals into the assimilation system or accounting for representativity
errors. Also, using the linear analysis to estimate the prediction
uncertainties, we were able to derive a series of general conclusions that
are discussed below.</p>
<sec id="Ch1.S4.SS1">
  <title>The effect of changing the observed species</title>
      <p>Our results show that the variability in ozone prediction error with both
photochemical regime and observing species scenario (CN, OCN and HCN) is
complex and no single observed species is ideal for all photochemical
conditions.</p>
      <p>Under NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited conditions ozone prediction error is strongly
controlled by the a posteriori NO emission errors, and therefore observations
of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and ozone would be highly advantageous. Ozone provides a
particularly good constraint upon NO emissions under very NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited
and VOC-limited conditions. The value of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> observations in
constraining NO emissions improves as the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> lifetime increases under
the somewhat less NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited conditions (<inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn>1.0</mml:mn></mml:mrow></mml:math></inline-formula>–1.25). Much of the troposphere is in fact highly NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited
outside of the most polluted areas <xref ref-type="bibr" rid="bib1.bibx12" id="paren.39"/>.</p>
      <p>Under VOC-limited conditions ozone prediction error is sensitive to both a
posteriori <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (due to the anticorrelation of ozone to
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>) and <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">VOC</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> errors, and thus observations of ozone, HCHO
and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> allow significant improvements in ozone prediction error.
Assimilating ozone, therefore, allows constraints to be placed upon VOC and
NO emission uncertainties. HCHO provides an excellent constraint upon
reactive VOC emissions, which due to their reactivity are more relevant to
air quality compared to less reactive VOCs. NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> provides an excellent
constraint upon NO emissions under VOC-limited conditions; more than under
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited conditions due to the longer NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> lifetime. Despite the
fact that large geographical portions of the US are NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited, a
disproportionately large percentage of the population lives within or is
exposed to ozone arising from VOC-limited conditions due to the significant
extent of urbanisation within the US. Large urbanised areas of the south-west
of the US that lack significant native vegetative biomass typically have a
larger VOC-limited regime that extends over the urban as well as suburban
areas. In contrast, US cities in the east are located in regions with often
dense vegetative biomass, e.g. Atlanta, and thus the VOC-limited region is
far more geographically limited to the urban centre itself. Therefore,
improving ozone predictive skill within VOC-limited conditions will not yield
forecasting improvements over a wide geographical area but will yield
improvements within certain regions with large populations.</p>
      <p>Our findings with respect to the utility of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO observations
for constraining NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and VOC emissions, respectively, and in turn for
improving ozone estimation are broadly consistent with the findings of
<xref ref-type="bibr" rid="bib1.bibx69" id="text.40"/>, who used satellite observations of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO in
conjunction with 4D-variational data assimilation to solve for NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and
HCHO emissions and to improve the model's ozone estimation. One should note,
however, that our work goes further by demonstrating how the efficacy of
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and HCHO observations varies according to photochemical regime.
Similar to <xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx14" id="text.41"/>, we demonstrate the use of ozone in
this regard. Our work offers an extension to <xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx14" id="text.42"/> by
considering the photochemical regime and by considering other observations
simultaneously.</p>
      <p>Note that the statements above regarding the need to constrain NO and VOC
emissions under NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>- and VOC-limited conditions, respectively, are
consistent with expectations since ozone is more sensitive to both sets of
emission uncertainties under the respective conditions. Further, the use of
ozone to constrain either NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> or VOC emissions in either of the
respective photochemical regimes is fully consistent with existing theory
relating to ozone control strategies <xref ref-type="bibr" rid="bib1.bibx56" id="paren.43"/> and our
understanding of factors controlling ozone on regional and continental
scales <xref ref-type="bibr" rid="bib1.bibx26" id="paren.44"/>. This was one motivation for us to explore this
problem.</p>
      <p>There is one further advantage to observations of ozone and HCHO made under
VOC-limited conditions. Often, plumes of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-polluted and VOC-limited
air can be exported from regions that are VOC limited into areas that are
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> limited, and this can lead to significant temporal variability in
the photochemical regime in the regions surrounding an urban centre.
Therefore, observations of HCHO and ozone in addition to NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
observations could help to understand such events and in turn reduce ozone
prediction errors.</p>
      <p>We have indirectly performed a sensitivity test to see if CO observations
affect ozone a posteriori prediction errors. We can address their potential
impact within the OCN scenario by examining the Jacobian matrix (see
Fig. <xref ref-type="fig" rid="Ch1.F4"/>). This shows that ozone is relatively insensitive to
perturbations in CO emissions and, therefore, also to a posteriori CO
emission uncertainties. In fact, it appears that only the <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">β</mml:mi><mml:mo>=</mml:mo><mml:mn>5.0</mml:mn></mml:mrow></mml:math></inline-formula> noise
scenario has sufficiently large a posteriori CO emission error to cause
significant a posteriori ozone prediction error (about 5 ppbv). The Jacobian
predicts perturbations in CO associated with such emission error to be over
700 ppbv. Such large changes in CO mixing ratios can occur in reality in
urban areas from the influence of wildfires. For instance, CO mixing ratios
were as high as 10 ppmv during the summer of 2010 as a direct result of the
rare and extreme fire events occurring in Russia that
summer <xref ref-type="bibr" rid="bib1.bibx33 bib1.bibx31" id="paren.45"/>. Episodic perturbations of
only <inline-formula><mml:math display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 700 ppbv are therefore
more likely to result from the more frequent and less severe wildfire events
that occur within Europe on an annual basis.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <title>Observation error</title>
      <p>We now make some broad conclusions regarding the observation uncertainties.
Both the OCN and standard HCN scenarios achieve a posteriori ozone prediction
errors of 2.4–6.1 and 1.9–6.3 ppbv, respectively, when absolute errors
equivalent to 33 % of the average over polluted regions were used. Even
though the OCN and HCN scenarios compared favourably to one another in terms
of their a posteriori ozone prediction errors, when we considered more
realistic observational noise on the HCHO observations, the performance of
the HCN scenario was degraded to 2.2–6.9 ppbv (33 % noise level). In
comparison, for the same noise level, the CN scenario achieved ozone
prediction errors of 2.5–8.4 ppbv. Only when the noise level was reduced to
25 % were the OCN and HCN scenarios able to achieve ozone prediction errors
of 5 ppbv or less. At 10 % noise, ozone prediction errors of less than
2.5 ppbv were consistently attained for both OCN and HCN. This strongly
points towards there being a good payoff in forecast accuracy with reducing
observation error. Further work in a 3-D framework would be required in order
to determine how these ozone forecast errors translate into the context of
real air quality forecasting. For instance, it might be possible to calculate
the probability of detection or false-alarm rate statistics in a similar way
to the work carried out by <xref ref-type="bibr" rid="bib1.bibx22" id="text.46"/>.</p>
      <p>Connecting this to real instrument profiles and real observations, and how
these might perform in a real assimilation system, is beyond the scope of
this study. The furthest we can take this point is to note that the resulting
prediction uncertainties for a particular observation noise scenario are
optimistic and represent the lowest error that could be expected. This is
because of reduced complexity in our model's representation of its spatial
domain and its meteorology and because of the way we represented the errors
in our observations, which in reality would be more complex.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <title>Temporal considerations</title>
      <p>Concerning the temporal sampling of observations, there is a strong
sensitivity of ozone prediction error to observation removal in the daytime,
particularly in the afternoon, and therefore observations made during the day
present greater returns in terms of improved forecasting ability. The
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited regimes favour observations made throughout the day with
increased observing density close to 15:00 LT The VOC-limited regimes favour
a greater concentration of observations within the afternoon even up to
18:00 LT in the most VOC-limited cases. These differing results for the two
different photochemical regimes are consistent with existing knowledge about
photochemistry and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> lifetime. The main underlying factors controlling
this are the changing time at which ozone peaks and the time of day that
emissions occur that contribute to that peak. Under VOC-limited conditions
ozone peaks later in the day due to the reduced ozone lifetime and the slower
recovery of HO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> radicals (suppressed by NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>) that occurs after the
night-time period. The NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited scenarios also show a smaller peak in
the morning. This smaller peak is present due to the observations of ozone
and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> during the morning rush hour that better allow NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>
emissions to be constrained. The presence of the smaller peak also indicates
that peak afternoon ozone concentrations are sensitive to the morning rush
hour emissions of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>; this is possible due to the longer ozone lifetime
present under NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited conditions.</p>
      <p>We demonstrate that the ozone prediction error is sensitive to the frequency
of observation. We show that ozone prediction errors vary between negligible
values and up to 12.5 ppbv as the observing frequency varies between once
per hour to once per day, respectively. The ozone prediction error is
maximised within either the NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">x</mml:mi></mml:msub></mml:math></inline-formula>-limited or VOC-limited regimes.
We find very similar levels of ozone prediction error for the scenarios that
observe once every hour and every 3 h (1.8–3.2 ppbv compared to
2.2–4.8 ppbv, respectively), and we also find that ozone prediction errors
greater than 5 ppbv only emerge for observing scenarios using a frequency of
6 h or more. The fact that our forecasting system performs best using
observations made at a frequency of 3 h or less highlights the temporal
sampling advantage posed by the ground observation network relative to
observing systems with lower observing frequency, i.e. a satellite in LEO
configuration.</p>
      <p>It is likely that there is an effect on ozone prediction error due to the
interaction between observing frequency and observing time.
Figure <xref ref-type="fig" rid="Ch1.F10"/> implies that observing scenarios measuring at
the same frequency could yield different prediction errors due to when they
actually sampled during the diurnal cycle. However, in each test we made at a
particular observing frequency, the observations were made at a fixed
specific set of times, and so our work does not address this issue. We do
think that this is relevant to evaluating different types of observing
scenario, and we would therefore like to explore this problem in a future
paper.</p>
</sec>
<sec id="Ch1.S4.SS4">
  <title>Implications for emission inversion</title>
      <p>Aside from the relevance of these results to air quality forecasting and
research in general, we believe these results are also relevant for emission
and flux estimation via inversion methodologies. Our prototype framework is
very similar to other work using 4D-variational data assimilation
methodologies
<xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx14 bib1.bibx24 bib1.bibx57 bib1.bibx32" id="paren.47"/> and
chemistry transport models that have focused on emission inversion. Much of
the emission inversion performance shown in this study is driven by the
photochemistry, and it is reasonable to suppose that some of our results are
relevant to future work conducted using 4D-variational data assimilation in
emission inversion studies. Note too that Kalman filter methods can also be
used in this application and we should expect that the performance of this
method will be similarly affected by photochemistry. From this premise, we
recommend that emission inversion studies for NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> utilise both
observations of NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and ozone since ozone observations add information
to the <inline-formula><mml:math display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mi mathvariant="normal">NO</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> estimation under both strongly positively and
negatively NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula>-limited conditions and NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> observations constrain
emission parameter uncertainties the most under the more VOC-limited
conditions. Thus, these two observations are complementary to each other.
Likewise, for emission inversions of VOCs, we recommend observations of HCHO
and ozone since HCHO observations can constrain VOC emission uncertainties
under a wide variety of photochemical conditions and ozone can constrain VOC
emission uncertainties under VOC-limited conditions.</p>
      <p>Previous studies have shown that NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
<xref ref-type="bibr" rid="bib1.bibx30 bib1.bibx69 bib1.bibx43" id="paren.48"/> and
HCHO <xref ref-type="bibr" rid="bib1.bibx57 bib1.bibx40 bib1.bibx41 bib1.bibx48 bib1.bibx49 bib1.bibx69" id="paren.49"/>
observations can constrain NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> and VOC emissions, respectively. Although
one could have inferred that combining ozone observations with either
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> or HCHO observations would be beneficial, we have shown that it
could be highly advantageous, which is consistent with <xref ref-type="bibr" rid="bib1.bibx42" id="text.50"/>.</p>
      <p>It should be noted that the conclusions regarding VOC emission inversion are
sensitive to our choice of representing VOC emission uncertainties with
ethene. The success of the VOC emission inversion is significantly limited by
solving for ethane instead of ethene emission uncertainties. This is due to
the lack of impact on secondary
chemical species such as HCHO. This is one reason why previous emission inversion modelling
studies have focused on constraining reactive VOCs like
isoprene <xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx41 bib1.bibx48 bib1.bibx49" id="paren.51"/>.</p>
      <p>Concerning CO, all of the observing scenarios (CN, OCN, and HCN) performed
equally well at constraining CO emission uncertainties since all these
scenarios included observations of CO. The Jacobian for CO with respect to CO
emission perturbations shown in Fig. <xref ref-type="fig" rid="Ch1.F4"/> clearly shows a
strong sensitivity of CO to changes in its own emissions. On the other hand,
Fig. <xref ref-type="fig" rid="Ch1.F4"/> shows much lower sensitivity of CO to the emissions
of NO or VOCs. These results are fully consistent with expectations due to
the relatively low reactivity of CO and its potential to produce ozone on
short timescales and of the lack of a strong chemical connection between
NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> levels and resulting CO concentrations. In the latter case, there is
a link due to the way that NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> can perturb OH, but due to the relative
unreactivity of CO this leads to only weak sensitivity in the Jacobian.
Consistent with this, there have already been several studies that use
observations of CO to constrain CO
emissions <xref ref-type="bibr" rid="bib1.bibx43 bib1.bibx32 bib1.bibx1" id="paren.52"/>.</p>
      <p>In the supporting sensitivity analysis probing emission solution sensitivity
to diurnal emission variability we demonstrate that emission inversions are
potentially highly sensitive to the assumed variability in the emissions and
that even perfect observations would lead to such errors. In our system such
emission inversion errors would be hard to characterise in the absence of any
information regarding the true state of the emissions variability. We
recommend that such uncertainties should be considered and characterised in
emissions inversion studies. Currently diurnal emission variabilities are
determined in the process of building bottom-up emission inventories.
Although our prototype assimilation system can only currently solve for
time-independent scaling factors, it could be modified to solve for
time-dependent scaling factors and the diurnal emissions variability. Future
assimilation forecasting systems should also possess this ability to solve
for time-dependent emission scaling factors. Observations that adequately
capture the diurnal variability in pollutants will be essential to making
this leap from time-independent solutions to time-dependent solutions.</p>
</sec>
<sec id="Ch1.S4.SS5">
  <title>Implications for GEO and LEO satellites</title>
      <p>In the previous sections we have motivated the potential utility of surface
or boundary layer ozone, CO, NO<inline-formula><mml:math display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, and HCHO observations either in the
context of improving ozone forecasting or for emission inversions. Ground
station networks that implicitly sample boundary layer air are already in
place across the American and European continents. However, only one of the
current generation of LEO satellite instruments (MOPITT) possesses a reliable
means of attaining unique instrument sensitivity to the boundary layer for
these gases <xref ref-type="bibr" rid="bib1.bibx66" id="paren.53"/>. If full advantage is to be taken of future
GEO stationary satellite instruments' (GEO-CAPE/TEMPO, GEMS, and Sentinel-4)
simultaneous potential for excellent coverage and temporal sampling, with the
aim of fully contributing to state of the art ozone air quality forecasting,
then attaining sensitivity to the boundary layer is essential and should be a
high-priority aim.</p>
      <p>The heightened importance of observations made during the morning and mid- to
late afternoon raises the question of whether making more targeted
observations, for instance during the morning and evening rush hours, would
be able to support ozone forecasting even further. There are various
observing systems that would be able to provide this capability, such as
several combined LEO missions or ground stations or a GEO mission with
increased temporal sampling capability during those periods. Investigating
these questions in the future would be of interest to us and the broader
scientific community.</p>
      <p>Our forecasting system is better able to improve the ozone prediction using
observations made during the day as opposed to the night. In the context of
satellites, and remembering that our idealised case ignores the effects of
transport, this indicates that instruments capable of observing during the
night, such as those observing in the TIR, do not offer a significant
advantage over instruments restricted to making measurements during the
daytime. Of course, if the effects of transported pollution were to be
considered, such as the night-time mixing of ozone between the boundary layer
and free troposphere, then making observations during the night could offer
additional utility by improving the estimated contribution to the pollution
made by this process. For instance, this could provide advance warning of the
trajectory of a pollution plume. Therefore, a limitation of this work is that
we are not able to explore such effects using a model with only idealised
meteorology.</p>
      <p>Our forecasting system (and the emission inversion) performs best using
observations made at a frequency of 3 h or less. This highlights the
temporal sampling advantage posed by satellites in a GEO configuration as
opposed to those in LEO. Currently, the proposed observing frequencies for
the future GEO missions <xref ref-type="bibr" rid="bib1.bibx35" id="paren.54"/> and the current ground monitoring
network are at least 1 h. LEO satellites, on the other hand, cannot attain
high-frequency sampling without a large number of satellites being
employed <xref ref-type="bibr" rid="bib1.bibx35" id="paren.55"/>. In isolation, a single LEO satellite with a
sampling frequency of between 1 and 16 days is perhaps inadequate for the
purpose of constraining precursor emissions on the regional scale or for
supporting air quality forecasting. Another consideration is that observing
frequencies of 3 h or more might not be adequate for studying the diurnal
cycle of pollutants and for forecasting systems that use 3D-var, for
instance, to update ozone concentrations. Note that the nature of our
framework for performing these tests (i.e. a box model using only idealised
meteorology) places limitations on our conclusions such that the performance
of the higher-frequency observing scenarios (3 h or less) may be too
optimistic. Thus, observing at 3 h may be insufficient to constrain ozone
precursor emissions.</p>
</sec>
</sec>

      
      </body>
    <back><ack><title>Acknowledgements</title><p>The authors thank CNRM-GAME for paying the publication fees. P. D. Hamer
thanks ORAU and the NPP program for funding and support, D. Millet and
D. Jacob for helpful discussion and comments, and A. M. Aghedo for help and
formatting tips. D. K. Henze is supported by NASA Applied Science Program.
The research was carried out at the Jet Propulsion Laboratory, California
Institute of Technology, under a contract with the National Aeronautics and
Space Administration. Government sponsorship acknowledged. This paper is
dedicated to the memory of C. J. Hamer.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: W. Lahoz</p></ack><?xmltex \hack{\newpage}?><?xmltex \hack{\newpage}?><ref-list>
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