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<front>
<journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Atmos. Chem. Phys.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/acp-11-11415-2011</article-id>
<title-group>
<article-title>Mass-spectrometric identification of primary biological particle markers and application to pristine submicron aerosol measurements in Amazonia</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Schneider</surname>
<given-names>J.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Freutel</surname>
<given-names>F.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Zorn</surname>
<given-names>S. R.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Chen</surname>
<given-names>Q.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Farmer</surname>
<given-names>D. K.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Jimenez</surname>
<given-names>J. L.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Martin</surname>
<given-names>S. T.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Artaxo</surname>
<given-names>P.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Wiedensohler</surname>
<given-names>A.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Borrmann</surname>
<given-names>S.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>Particle Chemistry Department, Max Planck Institute for Chemistry, Mainz, Germany</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>School of Engineering and Applied Sciences and Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA, USA</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>Dept. of Chem. &amp; Biochem. &amp; CIRES, University of Colorado, Boulder, CO, USA</addr-line>
</aff>
<aff id="aff4">
<label>4</label>
<addr-line>Applied Physics Department, Institute of Physics, University of São Paulo, Brazil</addr-line>
</aff>
<aff id="aff5">
<label>5</label>
<addr-line>Leibniz Institute for Tropospheric Research, Leipzig, Germany</addr-line>
</aff>
<aff id="aff6">
<label>6</label>
<addr-line>Institute for Atmospheric Physics, Johannes Gutenberg University Mainz, Germany</addr-line>
</aff>
<pub-date pub-type="epub">
<day>17</day>
<month>11</month>
<year>2011</year>
</pub-date>
<volume>11</volume>
<issue>22</issue>
<fpage>11415</fpage>
<lpage>11429</lpage>
<permissions>
<copyright-statement>Copyright: &#x000a9; 2011 J. Schneider et al.</copyright-statement>
<copyright-year>2011</copyright-year>
<license license-type="open-access">
<license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri"  xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions>
<self-uri xlink:href="https://acp.copernicus.org/articles/11/11415/2011/acp-11-11415-2011.html">This article is available from https://acp.copernicus.org/articles/11/11415/2011/acp-11-11415-2011.html</self-uri>
<self-uri xlink:href="https://acp.copernicus.org/articles/11/11415/2011/acp-11-11415-2011.pdf">The full text article is available as a PDF file from https://acp.copernicus.org/articles/11/11415/2011/acp-11-11415-2011.pdf</self-uri>
<abstract>
<p>The detection of primary biological material in submicron aerosol by means
of thermal desorption/electron impact ionization aerosol mass spectrometry
was investigated. Mass spectra of amino acids, carbohydrates, small
peptides, and proteins, all of which are key building blocks of biological
particles, were recorded in laboratory experiments. Several characteristic
marker fragments were identified. The intensity of the marker signals
relative to the total organic mass spectrum allows for an estimation of the
content of primary biological material in ambient organic aerosol. The
developed method was applied to mass spectra recorded during AMAZE-08, a
field campaign conducted in the pristine rainforest of the central Amazon
Basin, Brazil, during the wet season of February and March 2008. The low
abundance of identified marker fragments places upper limits of 7.5% for
amino acids and 5.6% for carbohydrates on the contribution of primary
biological aerosol particles (PBAP) to the submicron organic aerosol mass
concentration during this time period. Upper limits for the absolute
submicron concentrations for both compound classes range from 0.01 to
0.1 μg m&lt;sup&gt;−3&lt;/sup&gt;. Carbohydrates and proteins (composed of amino acids)
make up for about two thirds of the dry mass of a biological cell. Thus, our
findings suggest an upper limit for the PBAP mass fraction of about 20%
to the submicron organic aerosol measured in Amazonia during AMAZE-08.</p>
</abstract>
<counts><page-count count="15"/></counts>
</article-meta>
</front>
<body/>
<back>
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